AlfalfaGEDB | Msa1321020

M. sativa cultivar zhongmu-4 / Msa1321020

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321020	XP_039684667.1	73.128	681	119	5	1	628	127	796	0.0	1012

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321020	sp\|Q9SXB8\|Y1133_ARATH	38.407	703	310	20	4	597	136	824	2.45e-132	411

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321020	G7L990	73.128	681	119	5	1	628	127	796	0.0	1012

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa1321020	0.809086	2.251301e-50	-8.615850e-47
Msa0157290	Msa1321020	0.809256	2.069913e-50	-8.615850e-47
Msa0880140	Msa1321020	0.805433	1.338226e-49	-8.615850e-47
Msa1242230	Msa1321020	0.809529	1.809135e-50	-8.615850e-47
Msa1271290	Msa1321020	0.805034	1.622343e-49	-8.615850e-47
Msa1321020	Msa1438250	0.832161	1.106674e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1321020	MtrunA17_Chr8g0357881	72.394	681	120	7	1	628	134	799	980
Msa1321020	MtrunA17_Chr8g0358071	70.571	683	135	7	1	628	127	798	972
Msa1321020	MtrunA17_Chr8g0358031	71.865	654	126	6	1	597	128	780	959
Msa1321020	MtrunA17_Chr8g0357991	68.661	702	129	8	1	627	122	807	952
Msa1321020	MtrunA17_Chr8g0357961	68.331	701	131	8	1	627	123	806	949
Msa1321020	MtrunA17_Chr8g0358101	69.883	684	126	10	1	628	127	786	938
Msa1321020	MtrunA17_Chr8g0358121	70.631	681	123	11	1	628	129	785	924
Msa1321020	MtrunA17_Chr8g0358081	68.421	684	133	11	1	628	127	783	924
Msa1321020	MtrunA17_Chr8g0357981	70.625	640	124	7	40	628	1	627	894
Msa1321020	MtrunA17_Chr8g0357691	55.124	644	222	11	1	586	134	768	677

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321020	AT1G67520.3	39.617	679	292	20	4	584	128	786	1.15e-141	432
Msa1321020	AT1G67520.6	39.617	679	292	20	4	584	135	793	1.20e-141	432
Msa1321020	AT1G67520.4	41.471	639	293	21	4	584	128	743	9.46e-141	428
Msa1321020	AT1G11330.1	38.516	701	310	19	4	597	136	822	6.30e-134	413
Msa1321020	AT1G11330.2	38.407	703	310	20	4	597	136	824	2.49e-133	411
Msa1321020	AT1G65790.1	36.827	706	324	18	2	596	128	822	4.34e-126	392
Msa1321020	AT4G21390.1	36.895	702	316	19	1	587	129	818	1.33e-123	386
Msa1321020	AT1G11350.1	36.767	699	331	17	2	597	122	812	4.15e-123	384
Msa1321020	AT1G11300.2	36.246	698	338	17	1	612	126	802	8.17e-123	383
Msa1321020	AT1G65800.1	37.053	699	318	18	2	587	128	817	1.63e-122	383

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Find 114 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTAGCATTGTTCAAAT+TGG	0.223267	8_4:+26203028	None:intergenic
AAATGATACATTTGTTCCTG+AGG	0.592071	8_4:-26200291	Msa1321020:CDS
AAATTGAATATTAAGAAACA+CGG	0.694917	8_4:-26203371	Msa1321020:CDS
AACCAAAGATGTTAATGTTG+GGG	0.531367	8_4:-26202883	Msa1321020:CDS
AACTAGTAAAGGCCGAAACT+AGG	0.436084	8_4:+26203444	None:intergenic
AACTTCTAAAGTGTTTGAAG+GGG	0.616888	8_4:-26200102	Msa1321020:CDS
AACTTCTAGACAAGGAATTG+TGG	0.585059	8_4:-26201273	Msa1321020:CDS
AAGCGCTTCAACATAATAGA+AGG	0.425771	8_4:-26200869	Msa1321020:CDS
AAGGTAGCATTGTTCAAATT+GGG	0.399231	8_4:+26203029	None:intergenic
AAGTCTGATGTTTATAGCTT+TGG	0.343013	8_4:-26200531	Msa1321020:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAACAACTTCATCCAAAT+GGG	-	chr8_4:26200028-26200047	Msa1321020:CDS	30.0%
TTAGGTGTTAATCGAAAAAC+AGG	-	chr8_4:26200117-26200136	Msa1321020:CDS	30.0%
CGAGAGTTATATAAAGTTTC+CGG	-	chr8_4:26200383-26200402	Msa1321020:intron	30.0%
GAGAGTTATATAAAGTTTCC+GGG	-	chr8_4:26200384-26200403	Msa1321020:intron	30.0%
AAGGTAGCATTGTTCAAATT+GGG	+	chr8_4:26200570-26200589	None:intergenic	30.0%
AAAGGTAGCATTGTTCAAAT+TGG	+	chr8_4:26200571-26200590	None:intergenic	30.0%
GTATAGTTACAGTGATTGTA+AGG	-	chr8_4:26200605-26200624	Msa1321020:intron	30.0%
CTGGATGTATATTCTATTCA+TGG	-	chr8_4:26200685-26200704	Msa1321020:intron	30.0%
TCAACCAAAGATGTTAATGT+TGG	-	chr8_4:26200711-26200730	Msa1321020:intron	30.0%
CAACCAAAGATGTTAATGTT+GGG	-	chr8_4:26200712-26200731	Msa1321020:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	26199994	26203624	26199994	ID=Msa1321020;Name=Msa1321020
chr8_4	mRNA	26199994	26203624	26199994	ID=Msa1321020-mRNA-1;Parent=Msa1321020;Name=Msa1321020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.2\|0.16\|1\|1\|1\|6\|25\|628
chr8_4	exon	26199994	26200366	26199994	ID=Msa1321020-mRNA-1:exon:8988;Parent=Msa1321020-mRNA-1
chr8_4	exon	26200449	26200599	26200449	ID=Msa1321020-mRNA-1:exon:8987;Parent=Msa1321020-mRNA-1
chr8_4	exon	26200737	26200923	26200737	ID=Msa1321020-mRNA-1:exon:8986;Parent=Msa1321020-mRNA-1
chr8_4	exon	26201132	26201342	26201132	ID=Msa1321020-mRNA-1:exon:8985;Parent=Msa1321020-mRNA-1
chr8_4	exon	26201818	26202014	26201818	ID=Msa1321020-mRNA-1:exon:8984;Parent=Msa1321020-mRNA-1
chr8_4	exon	26202832	26203624	26202832	ID=Msa1321020-mRNA-1:exon:8983;Parent=Msa1321020-mRNA-1
chr8_4	CDS	26202832	26203624	26202832	ID=Msa1321020-mRNA-1:cds;Parent=Msa1321020-mRNA-1
chr8_4	CDS	26201818	26202014	26201818	ID=Msa1321020-mRNA-1:cds;Parent=Msa1321020-mRNA-1
chr8_4	CDS	26201132	26201342	26201132	ID=Msa1321020-mRNA-1:cds;Parent=Msa1321020-mRNA-1
chr8_4	CDS	26200737	26200923	26200737	ID=Msa1321020-mRNA-1:cds;Parent=Msa1321020-mRNA-1
chr8_4	CDS	26200449	26200599	26200449	ID=Msa1321020-mRNA-1:cds;Parent=Msa1321020-mRNA-1
chr8_4	CDS	26200019	26200366	26200019	ID=Msa1321020-mRNA-1:cds;Parent=Msa1321020-mRNA-1
chr8_4	three_prime_UTR	26199994	26200018	26199994	ID=Msa1321020-mRNA-1:three_prime_utr;Parent=Msa1321020-mRNA-1

Gene Sequence

>Msa1321020

ATGGCCACTATGCTAGACACAGGTAACTTTGTGCTTCAACAACTTCATCCAAATGGGACCAAGAGTCATGTACTTTGGCAGAGTTTTGATTATCCCACAAACACTTTGTTCCCAACGATGAAGTTAGGTGTTAATCGAAAAACAGGACGTAACTGGTCCCTAGTTTCGGCCTTTACTAGTTCAGTCGCGAGTTCAGGTGAATTTAGTCTTGAATGGGATCCGATAGAAGTCAAATTGAATATTAAGAAACACGGCAAAGTGTATTGGAAAAGCGGAAAACTTGGAAGGAACGGATTATTCGAGAACATTCCAGAGGACATCCAACGTGCGTATCGATACACGATTGTCTCTAACAAGGATGAAGACTCCTTCACTTTCGAAATGAAAGACGAGAGTTATATAAAGTTTCCGGGATGGAAACTATTCTCAACAGGGCGGTTGACGACTAATGAAGGAGATATTGGAAATGCAGATATGTGTTATGGATATAATAGTGATAGTGGATGCCAAAAATGGGAGGAAATACCAATTTGTAGGGATCAAGGTGAAGTGTTTCAGAAAAAGAGTGGTAGTCCCAATTTGAACAATGCTACCTTTCAAGAAAATGTGATGTATAGTTACAGTGATTGTAAGGCAAGTTGTTGGAGAAACTGTAATTGCAGTGGGTTCAGAAAATTTTATGATAATGGTACTGGATGTATATTCTATTCATGGAATTCAACCAAAGATGTTAATGTTGGGGGCGATGGTAACTATCATGTCTTGGTAAAGCCAATAAAGCTAACACCCCATGGGAAGAAAAGAAAAAGAAAGGAGAGTGAGATGCAAGATTTGGCAGCATCTAATGAATCTTATGGTACCAAAGATTTTGAAGACGACTTCAAGGGACATGATATAAAAGTTTTTACCTATACATCAATTTTAGAAGCAACTATGGACTTTTCCCTTGAAAACAAGTTAGGGCAGGGAGGCTATGGACCCGTTTATAAGGGAATCTTCGCAACAGGGCAAGAAGTTGCTGTAAAAAGACTTTCGAAAACTTCTAGACAAGGAATTGTGGAATTCAAAAATGAATTAGTATTGATATGTGAACTTCAGCACACAAATCTTGTACAACTACTTGGTTGTTGTATTCATCAAGAAGAAAGGATTCTAGTTTATGAATATATGCCAAACAAAAGCTTGGATTTCTATCTTTTTGATTGTACAAGAAGGAAGTTACTAGATTGGAAGAAGCGCTTCAACATAATAGAAGGAATTTCTCAAGGACTACTCTATCTTCATAAGTACTCAAGACTCAAAATCATTCATAGAGACTTGAAAGCAAGCAATATACTTCTTGATGAGAATATGAACCCAAAAATTTCTGATTTCGGTATGGCAAGAATTGGATACATGTCTCCAGAATATGCCATGGAAGGAATTTGTTCAACAAAGTCTGATGTTTATAGCTTTGGAGTGTTGCTTCTTGAAATTATTTGTGGCAGAAGAAACAATAGTTTCTATGACGTTGATCGCCCACTAAATCTAATAGGACATGCATGGGAGCTATGGAATGATGGTGGGTATCTAAAGCTAATGGATCAAACATTAAATGATACATTTGTTCCTGAGGAAGTGCAAAGATGCATTCATGTTGGTCTCTTATGTGTAGAACAATATGCAAATGATCGACCTACAATGTCCGATGTTATATCAATGTTAACAAGCAAATATGTACCCACAACCTTACCAAGAAGACCAGCATTCTATGTTAGAAGAGAGATCTTTGAAGAGGAAACAACTTCTAAAGTGTTTGAAGGGGAAACAACTTCTAAAGTGTTGGACACTGACACCTATTCTACGAGAGCAATTTCTATCTCATGTGAAGTAGAAGGGAAAATATAA

Protein sequence

>Msa1321020

MATMLDTGNFVLQQLHPNGTKSHVLWQSFDYPTNTLFPTMKLGVNRKTGRNWSLVSAFTSSVASSGEFSLEWDPIEVKLNIKKHGKVYWKSGKLGRNGLFENIPEDIQRAYRYTIVSNKDEDSFTFEMKDESYIKFPGWKLFSTGRLTTNEGDIGNADMCYGYNSDSGCQKWEEIPICRDQGEVFQKKSGSPNLNNATFQENVMYSYSDCKASCWRNCNCSGFRKFYDNGTGCIFYSWNSTKDVNVGGDGNYHVLVKPIKLTPHGKKRKRKESEMQDLAASNESYGTKDFEDDFKGHDIKVFTYTSILEATMDFSLENKLGQGGYGPVYKGIFATGQEVAVKRLSKTSRQGIVEFKNELVLICELQHTNLVQLLGCCIHQEERILVYEYMPNKSLDFYLFDCTRRKLLDWKKRFNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARIGYMSPEYAMEGICSTKSDVYSFGVLLLEIICGRRNNSFYDVDRPLNLIGHAWELWNDGGYLKLMDQTLNDTFVPEEVQRCIHVGLLCVEQYANDRPTMSDVISMLTSKYVPTTLPRRPAFYVRREIFEEETTSKVFEGETTSKVLDTDTYSTRAISISCEVEGKI*