AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1242230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242230 MtrunA17_Chr8g0355641 94.904 157 5 1 1 154 1 157 7.95e-108 303
Msa1242230 MtrunA17_Chr8g0355741 73.718 156 38 1 1 153 1 156 3.86e-82 239
Msa1242230 MtrunA17_Chr8g0355721 69.231 156 44 2 1 153 1 155 5.00e-79 231
Msa1242230 MtrunA17_Chr8g0355781 70.199 151 42 1 1 148 1 151 6.86e-78 228
Msa1242230 MtrunA17_Chr8g0355661 67.949 156 46 2 1 153 1 155 1.27e-75 222
Msa1242230 MtrunA17_Chr8g0355761 67.550 151 46 1 1 148 1 151 4.31e-74 218
Msa1242230 MtrunA17_Chr8g0355811 64.744 156 51 2 1 153 1 155 3.27e-73 216
Msa1242230 MtrunA17_Chr8g0355821 65.161 155 50 2 1 152 1 154 2.99e-71 211
Msa1242230 MtrunA17_Chr8g0355791 61.538 156 56 2 1 153 1 155 6.31e-68 202
Msa1242230 MtrunA17_Chr8g0355801 61.538 156 56 2 1 153 1 155 1.65e-67 201
Msa1242230 MtrunA17_Chr8g0355771 60.897 156 57 2 1 153 1 155 8.64e-67 200
Msa1242230 MtrunA17_Chr1g0160371 41.558 154 84 3 1 149 1 153 1.09e-34 118
Msa1242230 MtrunA17_Chr1g0160381 38.961 154 88 3 1 149 5 157 3.90e-33 114
Msa1242230 MtrunA17_Chr8g0339261 32.667 150 95 4 6 151 8 155 4.62e-23 89.0
Msa1242230 MtrunA17_Chr1g0160801 34.722 144 88 4 7 148 7 146 2.15e-22 87.0
Msa1242230 MtrunA17_Chr1g0160391 32.051 156 95 4 1 146 1 155 3.19e-20 81.6
Msa1242230 MtrunA17_Chr1g0160351 45.652 92 45 2 63 149 3 94 1.06e-19 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1242230 AT5G28010.1 32.237 152 97 4 3 149 15 165 4.80e-20 81.6
Msa1242230 AT5G28010.2 32.237 152 97 4 3 149 15 165 4.80e-20 81.6
Msa1242230 AT1G70830.5 31.579 152 98 4 3 149 22 172 3.68e-19 79.7
Msa1242230 AT1G70890.1 29.605 152 101 3 3 149 7 157 7.17e-19 78.6
Msa1242230 AT1G70840.1 29.605 152 101 3 3 149 20 170 7.76e-19 78.6
Msa1242230 AT1G70830.3 31.579 152 98 4 3 149 22 172 8.88e-19 79.3
Msa1242230 AT1G70830.2 31.579 152 98 4 3 149 22 172 2.04e-18 79.3
Msa1242230 AT1G70830.1 31.579 152 98 4 3 149 22 172 4.53e-18 79.7
Msa1242230 AT1G70830.1 30.263 152 100 4 3 149 184 334 1.32e-16 75.5
Msa1242230 AT1G70830.4 30.263 152 100 4 3 149 137 287 7.01e-17 75.9
Msa1242230 AT1G70850.2 28.667 150 101 3 3 147 9 157 1.89e-16 73.9
Msa1242230 AT1G23120.1 28.105 153 102 4 1 150 1 148 3.33e-16 71.2
Msa1242230 AT1G70850.3 30.000 150 99 4 3 147 9 157 3.87e-16 73.9
Msa1242230 AT1G70850.3 30.282 142 93 4 13 149 175 315 4.90e-15 70.9
Msa1242230 AT1G70850.1 30.000 150 99 4 3 147 9 157 3.87e-16 73.9
Msa1242230 AT1G70850.1 30.282 142 93 4 13 149 175 315 4.90e-15 70.9
Msa1242230 AT1G23120.2 28.758 153 99 5 3 150 51 198 1.60e-15 70.9
Msa1242230 AT1G23130.1 27.152 151 105 3 3 149 10 159 6.13e-15 68.2
Msa1242230 AT1G70870.1 33.113 151 85 5 1 148 1 138 1.27e-14 67.0
Msa1242230 AT1G70880.1 24.342 152 109 3 3 149 8 158 2.69e-14 66.6
Msa1242230 AT5G28000.1 28.289 152 103 4 3 149 13 163 3.04e-14 66.6
Msa1242230 AT4G23670.1 28.947 152 102 4 1 148 1 150 1.62e-13 64.3
Msa1242230 AT1G24020.1 27.451 153 106 3 1 149 1 152 4.38e-13 63.2
Msa1242230 AT1G24020.2 27.451 153 106 3 1 149 1 152 4.38e-13 63.2
Msa1242230 AT2G01520.1 27.632 152 104 4 1 148 1 150 2.56e-12 61.2
Msa1242230 AT1G35260.1 28.188 149 94 5 7 147 6 149 3.97e-12 60.8
Msa1242230 AT2G01530.1 28.289 152 103 4 1 148 1 150 1.31e-11 59.3
Msa1242230 AT1G14930.1 26.974 152 105 4 1 148 1 150 2.08e-11 58.9
Msa1242230 AT1G35310.1 25.352 142 100 3 13 150 12 151 6.31e-11 57.4

Find 43 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATGTTTCTTGGAAATT+TGG 0.163222 8_2:+26376423 Msa1242230:three_prime_UTR
TACTTATTTCTTATGACTTA+TGG 0.173467 8_2:-26376151 None:intergenic
ATTTAAAGGTCGCTCATATT+TGG 0.220038 8_2:+26376487 Msa1242230:three_prime_UTR
GGTAAACTTAGCACTGAAAT+TGG 0.239596 8_2:+26374684 Msa1242230:CDS
TCATGTTTGATTATGTTTCT+TGG 0.260153 8_2:+26376415 Msa1242230:three_prime_UTR
AGGTATTCCATCCAACTATT+TGG 0.260874 8_2:-26376073 None:intergenic
GTGTTTGTGTCTTCAATAAA+TGG 0.262059 8_2:+26376309 Msa1242230:three_prime_UTR
ACTCCCCTATATCTATTTAA+AGG 0.290742 8_2:+26376473 Msa1242230:three_prime_UTR
ATGGCACTACTGCAGTTAAA+TGG 0.307509 8_2:+26376011 Msa1242230:CDS
GGCATATTGCATATGCATAT+TGG 0.310006 8_2:+26376239 Msa1242230:three_prime_UTR
GAATGTTATATTCATAGTTT+TGG 0.318064 8_2:+26376387 Msa1242230:three_prime_UTR
GCGACCTTTAAATAGATATA+GGG 0.340264 8_2:-26376477 None:intergenic
GAAAGAGAAGAAAGAAAGAA+AGG 0.382578 8_2:-26374625 None:intergenic
AGCGACCTTTAAATAGATAT+AGG 0.386450 8_2:-26376478 None:intergenic
ATTCGCTCATGAATATTCAT+TGG 0.397354 8_2:-26376601 None:intergenic
TTGGCAACAGATGAAGTAAT+CGG 0.408439 8_2:+26376442 Msa1242230:three_prime_UTR
CTTTAAGCTCATCATTGATA+AGG 0.432392 8_2:+26375985 Msa1242230:CDS
TTCATCACCTTGATGCAGCT+TGG 0.437287 8_2:-26374793 None:intergenic
GTAAACTTAGCACTGAAATT+GGG 0.446714 8_2:+26374685 Msa1242230:CDS
AAAGAGAAGAAAGAAAGAAA+GGG 0.450377 8_2:-26374624 None:intergenic
AGAAATTGATGAGCACTATA+AGG 0.468901 8_2:+26375961 Msa1242230:CDS
AAAATCGTCCACAAGATCTT+CGG 0.479675 8_2:+26375935 Msa1242230:CDS
AACGACTTATAGTGAAATAG+AGG 0.480422 8_2:-26376718 None:intergenic
TATTCCATCCAACTATTTGG+AGG 0.505271 8_2:-26376070 None:intergenic
AGCTGCATCAAGGTGATGAA+TGG 0.510022 8_2:+26374796 Msa1242230:CDS
TTTCTTCACCGAAGATCTTG+TGG 0.512241 8_2:-26375943 None:intergenic
TCATAAGAAATAAGTAGTAA+TGG 0.515556 8_2:+26376158 Msa1242230:three_prime_UTR
TAATGGAATGGCTTAATGCA+TGG 0.530715 8_2:+26376175 Msa1242230:three_prime_UTR
AGAAATAAGTAGTAATGGAA+TGG 0.530981 8_2:+26376163 Msa1242230:three_prime_UTR
ATGTTGAACCTCCAAATAGT+TGG 0.544310 8_2:+26376062 Msa1242230:CDS
ACTCTGATTCAGTTAAACAT+TGG 0.550009 8_2:+26374823 Msa1242230:CDS
CGATTTCACAACAGAGGGCA+AGG 0.552186 8_2:+26375865 Msa1242230:intron
AATGGAATGGCTTAATGCAT+GGG 0.552317 8_2:+26376176 Msa1242230:three_prime_UTR
CTCATCATTGATAAGGCTGA+TGG 0.558442 8_2:+26375992 Msa1242230:CDS
CATGAAACCAAGCTGCATCA+AGG 0.562710 8_2:+26374786 Msa1242230:CDS
GAAAAGTGATGACGACTCAA+AGG 0.581488 8_2:+26376632 Msa1242230:three_prime_UTR
CGACCTTTAAATAGATATAG+GGG 0.601199 8_2:-26376476 None:intergenic
TGAACCTCCAAATAGTTGGA+TGG 0.602941 8_2:+26376066 Msa1242230:CDS
TGTCTCGAGTGCATTTGCTA+AGG 0.617854 8_2:-26376093 None:intergenic
TAGTTTGAAGAACTTGTCAG+AGG 0.640528 8_2:-26374718 None:intergenic
TCATCTTGTCAAGCAAGCAA+AGG 0.651550 8_2:+26376123 Msa1242230:CDS
ATGGAATGGCTTAATGCATG+GGG 0.652110 8_2:+26376177 Msa1242230:three_prime_UTR
AAACATTGGACTCATGTCCG+AGG 0.703337 8_2:+26374837 Msa1242230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTACAATTTTTTTTT+TGG + chr8_2:26375669-26375688 Msa1242230:intron 10.0%
!!! TTGTTTACAATTTTTTTTTT+GGG + chr8_2:26375670-26375689 Msa1242230:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG - chr8_2:26375836-26375855 None:intergenic 10.0%
!!! TTTGTTTACAATTTTTTTTT+TGG + chr8_2:26375669-26375688 Msa1242230:intron 10.0%
!!! TTGTTTACAATTTTTTTTTT+GGG + chr8_2:26375670-26375689 Msa1242230:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG - chr8_2:26375836-26375855 None:intergenic 10.0%
!!! TTAGTTTTTCTTTTCAAAAA+TGG + chr8_2:26374653-26374672 Msa1242230:exon 15.0%
!! ATTAGAAATATAATTTACCT+CGG - chr8_2:26374857-26374876 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG + chr8_2:26375077-26375096 Msa1242230:intron 15.0%
!! ACCATTAAATTAAAATTAGA+TGG + chr8_2:26375347-26375366 Msa1242230:intron 15.0%
!!! AGATGAATATTTTAATTGAA+CGG + chr8_2:26375440-26375459 Msa1242230:intron 15.0%
!! ATCATCATGATATATAAAAT+TGG + chr8_2:26375557-26375576 Msa1242230:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG - chr8_2:26375629-26375648 None:intergenic 15.0%
!!! TGTTTACAATTTTTTTTTTG+GGG + chr8_2:26375671-26375690 Msa1242230:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG - chr8_2:26375769-26375788 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG + chr8_2:26375829-26375848 Msa1242230:intron 15.0%
!!! TTAGTTTTTCTTTTCAAAAA+TGG + chr8_2:26374653-26374672 Msa1242230:exon 15.0%
!! ATTAGAAATATAATTTACCT+CGG - chr8_2:26374857-26374876 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG + chr8_2:26375077-26375096 Msa1242230:intron 15.0%
!! ACCATTAAATTAAAATTAGA+TGG + chr8_2:26375347-26375366 Msa1242230:intron 15.0%
!!! AGATGAATATTTTAATTGAA+CGG + chr8_2:26375440-26375459 Msa1242230:intron 15.0%
!! ATCATCATGATATATAAAAT+TGG + chr8_2:26375557-26375576 Msa1242230:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG - chr8_2:26375629-26375648 None:intergenic 15.0%
!!! TGTTTACAATTTTTTTTTTG+GGG + chr8_2:26375671-26375690 Msa1242230:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG - chr8_2:26375769-26375788 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG + chr8_2:26375829-26375848 Msa1242230:intron 15.0%
!!! GACATCTTTAAATTTCATTT+TGG + chr8_2:26375007-26375026 Msa1242230:intron 20.0%
!! CAATAACATATTGCAAAATT+TGG + chr8_2:26375076-26375095 Msa1242230:intron 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG - chr8_2:26375129-26375148 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG + chr8_2:26375128-26375147 Msa1242230:intron 20.0%
!! GATCTAAGTATAAGATATAA+AGG + chr8_2:26375164-26375183 Msa1242230:intron 20.0%
!! ATTCAAGATCAATATCAATA+TGG - chr8_2:26375209-26375228 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG + chr8_2:26375267-26375286 Msa1242230:intron 20.0%
!! TTCCATTATTAATTGTTGAT+TGG - chr8_2:26375272-26375291 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG - chr8_2:26375351-26375370 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG + chr8_2:26375569-26375588 Msa1242230:intron 20.0%
!!! TACTTATTTCTTATGACTTA+TGG - chr8_2:26376154-26376173 None:intergenic 20.0%
!! TCATAAGAAATAAGTAGTAA+TGG + chr8_2:26376158-26376177 Msa1242230:three_prime_UTR 20.0%
!!! TTTTTATGGAATAAATGTGT+CGG + chr8_2:26376279-26376298 Msa1242230:three_prime_UTR 20.0%
!!! GAATGTTATATTCATAGTTT+TGG + chr8_2:26376387-26376406 Msa1242230:three_prime_UTR 20.0%
!!! GACATCTTTAAATTTCATTT+TGG + chr8_2:26375007-26375026 Msa1242230:intron 20.0%
!! CAATAACATATTGCAAAATT+TGG + chr8_2:26375076-26375095 Msa1242230:intron 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG - chr8_2:26375129-26375148 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG + chr8_2:26375128-26375147 Msa1242230:intron 20.0%
!! GATCTAAGTATAAGATATAA+AGG + chr8_2:26375164-26375183 Msa1242230:intron 20.0%
!! ATTCAAGATCAATATCAATA+TGG - chr8_2:26375209-26375228 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG + chr8_2:26375267-26375286 Msa1242230:intron 20.0%
!! TTCCATTATTAATTGTTGAT+TGG - chr8_2:26375272-26375291 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG - chr8_2:26375351-26375370 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG + chr8_2:26375569-26375588 Msa1242230:intron 20.0%
!!! TACTTATTTCTTATGACTTA+TGG - chr8_2:26376154-26376173 None:intergenic 20.0%
!! TCATAAGAAATAAGTAGTAA+TGG + chr8_2:26376158-26376177 Msa1242230:three_prime_UTR 20.0%
!!! TTTTTATGGAATAAATGTGT+CGG + chr8_2:26376279-26376298 Msa1242230:three_prime_UTR 20.0%
!!! GAATGTTATATTCATAGTTT+TGG + chr8_2:26376387-26376406 Msa1242230:three_prime_UTR 20.0%
! AAAGAGAAGAAAGAAAGAAA+GGG - chr8_2:26374627-26374646 None:intergenic 25.0%
! ATTTCTAATAACACTAACAC+TGG + chr8_2:26374868-26374887 Msa1242230:intron 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG + chr8_2:26374933-26374952 Msa1242230:intron 25.0%
! ATGTACAAGTACAACTATAA+AGG + chr8_2:26375469-26375488 Msa1242230:intron 25.0%
!! AGAAATAAGTAGTAATGGAA+TGG + chr8_2:26376163-26376182 Msa1242230:three_prime_UTR 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG + chr8_2:26376218-26376237 Msa1242230:three_prime_UTR 25.0%
!!! GTTTTCATCTTTCGTTTTTA+TGG + chr8_2:26376265-26376284 Msa1242230:three_prime_UTR 25.0%
!!! AAATGGTTTTTTGTGCTTTT+TGG + chr8_2:26376326-26376345 Msa1242230:three_prime_UTR 25.0%
! TCATGTTTGATTATGTTTCT+TGG + chr8_2:26376415-26376434 Msa1242230:three_prime_UTR 25.0%
! GATTATGTTTCTTGGAAATT+TGG + chr8_2:26376423-26376442 Msa1242230:three_prime_UTR 25.0%
! AAAGAGAAGAAAGAAAGAAA+GGG - chr8_2:26374627-26374646 None:intergenic 25.0%
! ATTTCTAATAACACTAACAC+TGG + chr8_2:26374868-26374887 Msa1242230:intron 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG + chr8_2:26374933-26374952 Msa1242230:intron 25.0%
! ATGTACAAGTACAACTATAA+AGG + chr8_2:26375469-26375488 Msa1242230:intron 25.0%
!! AGAAATAAGTAGTAATGGAA+TGG + chr8_2:26376163-26376182 Msa1242230:three_prime_UTR 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG + chr8_2:26376218-26376237 Msa1242230:three_prime_UTR 25.0%
!!! GTTTTCATCTTTCGTTTTTA+TGG + chr8_2:26376265-26376284 Msa1242230:three_prime_UTR 25.0%
!!! AAATGGTTTTTTGTGCTTTT+TGG + chr8_2:26376326-26376345 Msa1242230:three_prime_UTR 25.0%
! TCATGTTTGATTATGTTTCT+TGG + chr8_2:26376415-26376434 Msa1242230:three_prime_UTR 25.0%
! GATTATGTTTCTTGGAAATT+TGG + chr8_2:26376423-26376442 Msa1242230:three_prime_UTR 25.0%
GAAAGAGAAGAAAGAAAGAA+AGG - chr8_2:26374628-26374647 None:intergenic 30.0%
! GTAAACTTAGCACTGAAATT+GGG + chr8_2:26374685-26374704 Msa1242230:CDS 30.0%
ACTCTGATTCAGTTAAACAT+TGG + chr8_2:26374823-26374842 Msa1242230:CDS 30.0%
!! ACTGGATTTATGTGCTATTT+CGG + chr8_2:26374886-26374905 Msa1242230:intron 30.0%
GATATATATAGCAAGAGTGA+TGG + chr8_2:26375295-26375314 Msa1242230:intron 30.0%
!! AAATTGGTTGATTTGATGGT+TGG + chr8_2:26375573-26375592 Msa1242230:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG + chr8_2:26375580-26375599 Msa1242230:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG - chr8_2:26375607-26375626 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG - chr8_2:26375621-26375640 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG + chr8_2:26375961-26375980 Msa1242230:CDS 30.0%
CTTTAAGCTCATCATTGATA+AGG + chr8_2:26375985-26376004 Msa1242230:CDS 30.0%
GTGTTTGTGTCTTCAATAAA+TGG + chr8_2:26376309-26376328 Msa1242230:three_prime_UTR 30.0%
ACTCCCCTATATCTATTTAA+AGG + chr8_2:26376473-26376492 Msa1242230:three_prime_UTR 30.0%
CGACCTTTAAATAGATATAG+GGG - chr8_2:26376479-26376498 None:intergenic 30.0%
GCGACCTTTAAATAGATATA+GGG - chr8_2:26376480-26376499 None:intergenic 30.0%
AGCGACCTTTAAATAGATAT+AGG - chr8_2:26376481-26376500 None:intergenic 30.0%
ATTTAAAGGTCGCTCATATT+TGG + chr8_2:26376487-26376506 Msa1242230:three_prime_UTR 30.0%
ATTCGCTCATGAATATTCAT+TGG - chr8_2:26376604-26376623 None:intergenic 30.0%
GAAAGAGAAGAAAGAAAGAA+AGG - chr8_2:26374628-26374647 None:intergenic 30.0%
! GTAAACTTAGCACTGAAATT+GGG + chr8_2:26374685-26374704 Msa1242230:CDS 30.0%
ACTCTGATTCAGTTAAACAT+TGG + chr8_2:26374823-26374842 Msa1242230:CDS 30.0%
!! ACTGGATTTATGTGCTATTT+CGG + chr8_2:26374886-26374905 Msa1242230:intron 30.0%
GATATATATAGCAAGAGTGA+TGG + chr8_2:26375295-26375314 Msa1242230:intron 30.0%
!! AAATTGGTTGATTTGATGGT+TGG + chr8_2:26375573-26375592 Msa1242230:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG + chr8_2:26375580-26375599 Msa1242230:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG - chr8_2:26375607-26375626 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG - chr8_2:26375621-26375640 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG + chr8_2:26375961-26375980 Msa1242230:CDS 30.0%
CTTTAAGCTCATCATTGATA+AGG + chr8_2:26375985-26376004 Msa1242230:CDS 30.0%
GTGTTTGTGTCTTCAATAAA+TGG + chr8_2:26376309-26376328 Msa1242230:three_prime_UTR 30.0%
ACTCCCCTATATCTATTTAA+AGG + chr8_2:26376473-26376492 Msa1242230:three_prime_UTR 30.0%
CGACCTTTAAATAGATATAG+GGG - chr8_2:26376479-26376498 None:intergenic 30.0%
GCGACCTTTAAATAGATATA+GGG - chr8_2:26376480-26376499 None:intergenic 30.0%
AGCGACCTTTAAATAGATAT+AGG - chr8_2:26376481-26376500 None:intergenic 30.0%
ATTTAAAGGTCGCTCATATT+TGG + chr8_2:26376487-26376506 Msa1242230:three_prime_UTR 30.0%
ATTCGCTCATGAATATTCAT+TGG - chr8_2:26376604-26376623 None:intergenic 30.0%
! TTTTCAAAAATGGTGCTTGC+TGG + chr8_2:26374663-26374682 Msa1242230:exon 35.0%
! GGTAAACTTAGCACTGAAAT+TGG + chr8_2:26374684-26374703 Msa1242230:CDS 35.0%
TAGTTTGAAGAACTTGTCAG+AGG - chr8_2:26374721-26374740 None:intergenic 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG + chr8_2:26375302-26375321 Msa1242230:intron 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG + chr8_2:26375579-26375598 Msa1242230:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG + chr8_2:26375581-26375600 Msa1242230:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG + chr8_2:26375935-26375954 Msa1242230:CDS 35.0%
ATGTTGAACCTCCAAATAGT+TGG + chr8_2:26376062-26376081 Msa1242230:CDS 35.0%
TATTCCATCCAACTATTTGG+AGG - chr8_2:26376073-26376092 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG - chr8_2:26376076-26376095 None:intergenic 35.0%
TAATGGAATGGCTTAATGCA+TGG + chr8_2:26376175-26376194 Msa1242230:three_prime_UTR 35.0%
AATGGAATGGCTTAATGCAT+GGG + chr8_2:26376176-26376195 Msa1242230:three_prime_UTR 35.0%
GGCATATTGCATATGCATAT+TGG + chr8_2:26376239-26376258 Msa1242230:three_prime_UTR 35.0%
TTGGCAACAGATGAAGTAAT+CGG + chr8_2:26376442-26376461 Msa1242230:three_prime_UTR 35.0%
! TTTTCAAAAATGGTGCTTGC+TGG + chr8_2:26374663-26374682 Msa1242230:exon 35.0%
! GGTAAACTTAGCACTGAAAT+TGG + chr8_2:26374684-26374703 Msa1242230:CDS 35.0%
TAGTTTGAAGAACTTGTCAG+AGG - chr8_2:26374721-26374740 None:intergenic 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG + chr8_2:26375302-26375321 Msa1242230:intron 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG + chr8_2:26375579-26375598 Msa1242230:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG + chr8_2:26375581-26375600 Msa1242230:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG + chr8_2:26375935-26375954 Msa1242230:CDS 35.0%
ATGTTGAACCTCCAAATAGT+TGG + chr8_2:26376062-26376081 Msa1242230:CDS 35.0%
TATTCCATCCAACTATTTGG+AGG - chr8_2:26376073-26376092 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG - chr8_2:26376076-26376095 None:intergenic 35.0%
TAATGGAATGGCTTAATGCA+TGG + chr8_2:26376175-26376194 Msa1242230:three_prime_UTR 35.0%
AATGGAATGGCTTAATGCAT+GGG + chr8_2:26376176-26376195 Msa1242230:three_prime_UTR 35.0%
GGCATATTGCATATGCATAT+TGG + chr8_2:26376239-26376258 Msa1242230:three_prime_UTR 35.0%
TTGGCAACAGATGAAGTAAT+CGG + chr8_2:26376442-26376461 Msa1242230:three_prime_UTR 35.0%
TACCTTCGATTTCACAACAG+AGG + chr8_2:26375859-26375878 Msa1242230:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG + chr8_2:26375860-26375879 Msa1242230:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG - chr8_2:26375946-26375965 None:intergenic 40.0%
CTCATCATTGATAAGGCTGA+TGG + chr8_2:26375992-26376011 Msa1242230:CDS 40.0%
ATGGCACTACTGCAGTTAAA+TGG + chr8_2:26376011-26376030 Msa1242230:CDS 40.0%
TGAACCTCCAAATAGTTGGA+TGG + chr8_2:26376066-26376085 Msa1242230:CDS 40.0%
TCATCTTGTCAAGCAAGCAA+AGG + chr8_2:26376123-26376142 Msa1242230:CDS 40.0%
ATGGAATGGCTTAATGCATG+GGG + chr8_2:26376177-26376196 Msa1242230:three_prime_UTR 40.0%
! GAAAAGTGATGACGACTCAA+AGG + chr8_2:26376632-26376651 Msa1242230:three_prime_UTR 40.0%
TACCTTCGATTTCACAACAG+AGG + chr8_2:26375859-26375878 Msa1242230:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG + chr8_2:26375860-26375879 Msa1242230:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG - chr8_2:26375946-26375965 None:intergenic 40.0%
CTCATCATTGATAAGGCTGA+TGG + chr8_2:26375992-26376011 Msa1242230:CDS 40.0%
ATGGCACTACTGCAGTTAAA+TGG + chr8_2:26376011-26376030 Msa1242230:CDS 40.0%
TGAACCTCCAAATAGTTGGA+TGG + chr8_2:26376066-26376085 Msa1242230:CDS 40.0%
TCATCTTGTCAAGCAAGCAA+AGG + chr8_2:26376123-26376142 Msa1242230:CDS 40.0%
ATGGAATGGCTTAATGCATG+GGG + chr8_2:26376177-26376196 Msa1242230:three_prime_UTR 40.0%
! GAAAAGTGATGACGACTCAA+AGG + chr8_2:26376632-26376651 Msa1242230:three_prime_UTR 40.0%
CATGAAACCAAGCTGCATCA+AGG + chr8_2:26374786-26374805 Msa1242230:CDS 45.0%
TTCATCACCTTGATGCAGCT+TGG - chr8_2:26374796-26374815 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG + chr8_2:26374796-26374815 Msa1242230:CDS 45.0%
AAACATTGGACTCATGTCCG+AGG + chr8_2:26374837-26374856 Msa1242230:CDS 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG - chr8_2:26376096-26376115 None:intergenic 45.0%
CATGAAACCAAGCTGCATCA+AGG + chr8_2:26374786-26374805 Msa1242230:CDS 45.0%
TTCATCACCTTGATGCAGCT+TGG - chr8_2:26374796-26374815 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG + chr8_2:26374796-26374815 Msa1242230:CDS 45.0%
AAACATTGGACTCATGTCCG+AGG + chr8_2:26374837-26374856 Msa1242230:CDS 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG - chr8_2:26376096-26376115 None:intergenic 45.0%
!!! AATAATAATTTAAAACTATT+TGG - chr8_2:26375633-26375652 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG + chr8_2:26375740-26375759 Msa1242230:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG + chr8_2:26375741-26375760 Msa1242230:intron 5.0%
!!! AATAATAATTTAAAACTATT+TGG - chr8_2:26375633-26375652 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG + chr8_2:26375740-26375759 Msa1242230:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG + chr8_2:26375741-26375760 Msa1242230:intron 5.0%
GCCCTCTGTTGTGAAATCGA+AGG - chr8_2:26375864-26375883 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG + chr8_2:26375865-26375884 Msa1242230:intron 50.0%
GCCCTCTGTTGTGAAATCGA+AGG - chr8_2:26375864-26375883 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG + chr8_2:26375865-26375884 Msa1242230:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 26374617 26376729 26374617 ID=Msa1242230;Name=Msa1242230
chr8_2 mRNA 26374617 26376729 26374617 ID=Msa1242230-mRNA-1;Parent=Msa1242230;Name=Msa1242230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|573|154
chr8_2 exon 26374617 26374858 26374617 ID=Msa1242230-mRNA-1:exon:9267;Parent=Msa1242230-mRNA-1
chr8_2 exon 26375879 26376729 26375879 ID=Msa1242230-mRNA-1:exon:9268;Parent=Msa1242230-mRNA-1
chr8_2 five_prime_UTR 26374617 26374671 26374617 ID=Msa1242230-mRNA-1:five_prime_utr;Parent=Msa1242230-mRNA-1
chr8_2 CDS 26374672 26374858 26374672 ID=Msa1242230-mRNA-1:cds;Parent=Msa1242230-mRNA-1
chr8_2 CDS 26375879 26376156 26375879 ID=Msa1242230-mRNA-1:cds;Parent=Msa1242230-mRNA-1
chr8_2 three_prime_UTR 26376157 26376729 26376157 ID=Msa1242230-mRNA-1:three_prime_utr;Parent=Msa1242230-mRNA-1
Gene Sequence

>Msa1242230

ATGGTGCTTGCTGGTAAACTTAGCACTGAAATTGGGATCAAAGCATCCTCTGACAAGTTCTTCAAACTATTCGCATCAAATATTCACGAACTGCAAAACATTTGTGAAAGTGTTCATGAAACCAAGCTGCATCAAGGTGATGAATGGCATCACTCTGATTCAGTTAAACATTGGACTCATGTCCGAGAGGGCAAGGTATACACATGTCATGAGAGTTTCGAAGAAATTGATGAAAAGAACAAAAAAATCGTCCACAAGATCTTCGGTGAAGAAATTGATGAGCACTATAAGGTCTTTAAGCTCATCATTGATAAGGCTGATGGCACTACTGCAGTTAAATGGACTGTTGAATATGAGAAGATCAATGAAGATGTTGAACCTCCAAATAGTTGGATGGAATACCTTAGCAAATGCACTCGAGACATTGATGCTCATCTTGTCAAGCAAGCAAAGGTTGCTCCATAA

Protein sequence

>Msa1242230

MVLAGKLSTEIGIKASSDKFFKLFASNIHELQNICESVHETKLHQGDEWHHSDSVKHWTHVREGKVYTCHESFEEIDEKNKKIVHKIFGEEIDEHYKVFKLIIDKADGTTAVKWTVEYEKINEDVEPPNSWMEYLSKCTRDIDAHLVKQAKVAP*