Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322400 | sp|Q94BZ1|ZIFL1_ARATH | 51.875 | 480 | 187 | 5 | 4 | 443 | 3 | 478 | 1.72e-174 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322400 | A0A072TNX0 | 89.549 | 488 | 12 | 3 | 1 | 450 | 1 | 487 | 0.0 | 873 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138220 | Msa1322400 | 0.800404 | 1.464484e-48 | -8.615850e-47 |
| Msa0183410 | Msa1322400 | 0.815316 | 9.842866e-52 | -8.615850e-47 |
| Msa1241990 | Msa1322400 | 0.939294 | 1.617830e-99 | -8.615850e-47 |
| Msa1283150 | Msa1322400 | 0.936035 | 3.302370e-97 | -8.615850e-47 |
| Msa1187780 | Msa1322400 | 0.920391 | 1.357599e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322400 | MtrunA17_Chr8g0354831 | 89.549 | 488 | 12 | 3 | 1 | 450 | 1 | 487 | 0.0 | 873 |
| Msa1322400 | MtrunA17_Chr8g0354841 | 75.104 | 482 | 78 | 4 | 7 | 450 | 3 | 480 | 0.0 | 741 |
| Msa1322400 | MtrunA17_Chr8g0354851 | 72.255 | 501 | 78 | 5 | 7 | 450 | 3 | 499 | 0.0 | 723 |
| Msa1322400 | MtrunA17_Chr8g0354891 | 73.156 | 488 | 89 | 4 | 1 | 450 | 1 | 484 | 0.0 | 714 |
| Msa1322400 | MtrunA17_Chr3g0080421 | 63.804 | 489 | 136 | 5 | 1 | 450 | 1 | 487 | 0.0 | 642 |
| Msa1322400 | MtrunA17_Chr3g0080431 | 59.119 | 477 | 153 | 3 | 4 | 442 | 2 | 474 | 0.0 | 571 |
| Msa1322400 | MtrunA17_Chr8g0364441 | 51.626 | 492 | 120 | 8 | 1 | 414 | 1 | 452 | 5.52e-167 | 478 |
| Msa1322400 | MtrunA17_Chr8g0354861 | 74.172 | 302 | 53 | 3 | 134 | 414 | 6 | 303 | 1.75e-157 | 448 |
| Msa1322400 | MtrunA17_Chr3g0123421 | 57.895 | 209 | 49 | 3 | 1 | 171 | 1 | 208 | 3.04e-72 | 226 |
| Msa1322400 | MtrunA17_Chr3g0123441 | 71.304 | 115 | 33 | 0 | 304 | 418 | 1 | 115 | 6.84e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322400 | AT5G13750.1 | 51.875 | 480 | 187 | 5 | 4 | 443 | 3 | 478 | 1.75e-175 | 500 |
| Msa1322400 | AT3G43790.1 | 49.375 | 480 | 199 | 5 | 1 | 440 | 1 | 476 | 2.83e-168 | 482 |
| Msa1322400 | AT3G43790.4 | 49.375 | 480 | 199 | 5 | 1 | 440 | 1 | 476 | 2.83e-168 | 482 |
| Msa1322400 | AT3G43790.2 | 48.765 | 486 | 199 | 6 | 1 | 440 | 1 | 482 | 1.95e-165 | 475 |
| Msa1322400 | AT3G43790.3 | 48.765 | 486 | 199 | 6 | 1 | 440 | 1 | 482 | 1.95e-165 | 475 |
| Msa1322400 | AT5G13740.1 | 48.554 | 484 | 205 | 4 | 4 | 443 | 3 | 486 | 1.58e-162 | 468 |
| Msa1322400 | AT5G13740.2 | 48.636 | 440 | 182 | 4 | 4 | 399 | 3 | 442 | 3.18e-146 | 424 |
| Msa1322400 | AT5G13750.2 | 51.646 | 395 | 165 | 3 | 72 | 443 | 1 | 392 | 4.24e-146 | 422 |
| Msa1322400 | AT5G13750.3 | 48.426 | 413 | 169 | 5 | 4 | 376 | 3 | 411 | 8.56e-136 | 397 |
| Msa1322400 | AT5G13750.4 | 48.426 | 413 | 169 | 5 | 4 | 376 | 3 | 411 | 8.56e-136 | 397 |
| Msa1322400 | AT3G43790.5 | 47.677 | 409 | 170 | 5 | 1 | 369 | 1 | 405 | 1.93e-132 | 388 |
Find 119 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGTTAGTCCTCTAAATT+TGG | 0.111977 | 8_4:-29401234 | Msa1322400:CDS |
| GAACCCTTTGGAAAGATATT+TGG | 0.146054 | 8_4:+29401804 | None:intergenic |
| GAACTTTGACATCTGTATTA+TGG | 0.179763 | 8_4:-29403026 | Msa1322400:CDS |
| TGTTATCACAAGATTTCTTT+TGG | 0.235759 | 8_4:-29402769 | Msa1322400:CDS |
| GTATCACAGGGTCATTATTT+AGG | 0.250113 | 8_4:-29399574 | Msa1322400:three_prime_UTR |
| AGCTATTGTGCTTCTCTTAT+TGG | 0.260070 | 8_4:-29399426 | Msa1322400:three_prime_UTR |
| AAATAACTGCATTGTCCTTC+TGG | 0.260368 | 8_4:-29399367 | Msa1322400:three_prime_UTR |
| AAAACTTGTAGTACCTTTAC+TGG | 0.271588 | 8_4:+29402723 | None:intergenic |
| ATCAAATTTATATTAATAGA+AGG | 0.285747 | 8_4:+29399213 | None:intergenic |
| CCACTGCTCGGTTCTGTATA+AGG | 0.292660 | 8_4:+29400650 | None:intergenic |
| CTTAATTTGGTTGAAGGACT+TGG | 0.297066 | 8_4:-29399692 | Msa1322400:CDS |
| GATGCTGAAGCTATAGAAAA+TGG | 0.297671 | 8_4:-29401478 | Msa1322400:CDS |
| ACTTACAATATACCAATATA+TGG | 0.310859 | 8_4:-29401054 | Msa1322400:CDS |
| AACTTTGACATCTGTATTAT+GGG | 0.312954 | 8_4:-29403025 | Msa1322400:CDS |
| TCTGTTAGTCCTCTAAATTT+GGG | 0.313936 | 8_4:-29401233 | Msa1322400:CDS |
| ATGAAAACCTCTTGATGAAT+TGG | 0.315223 | 8_4:-29401417 | Msa1322400:CDS |
| CTGATTTCAGACAACTTTGC+AGG | 0.315730 | 8_4:-29399606 | Msa1322400:exon |
| TTCCATTAGCTGCTCCTCTT+TGG | 0.329427 | 8_4:+29400479 | None:intergenic |
| TTGCCCTGCTTCATAATATC+AGG | 0.334714 | 8_4:-29401663 | Msa1322400:CDS |
| CTATGTAAGTTATAATGTTT+AGG | 0.335174 | 8_4:-29399263 | Msa1322400:three_prime_UTR |
| GGTAATGTTCTTGCAATTAC+AGG | 0.337198 | 8_4:-29401182 | Msa1322400:intron |
| TAGGGACTTATCCTCTAATC+TGG | 0.339960 | 8_4:-29399173 | Msa1322400:three_prime_UTR |
| TCTTTCCAAAGGGTTCCTTT+TGG | 0.343617 | 8_4:-29401797 | Msa1322400:CDS |
| CAAGTCCTTCAACCAAATTA+AGG | 0.346986 | 8_4:+29399693 | None:intergenic |
| TATTGCCTGCTTGTGGATTC+CGG | 0.349430 | 8_4:-29401622 | Msa1322400:intron |
| TTCTTCCTTAATTTGGTTGA+AGG | 0.351724 | 8_4:-29399698 | Msa1322400:CDS |
| GGAACTTTAAATGGCGCAAT+TGG | 0.353752 | 8_4:-29402747 | Msa1322400:CDS |
| AAAACACCAATGACTATAAC+AGG | 0.374710 | 8_4:+29402973 | None:intergenic |
| AGCAATGATAGATGACATAA+AGG | 0.379944 | 8_4:+29401393 | None:intergenic |
| AAGTTGAAACAAATTTATAA+AGG | 0.382132 | 8_4:+29399338 | None:intergenic |
| ATAAACTCACCATGAAATAA+AGG | 0.383235 | 8_4:+29403509 | None:intergenic |
| CAAGGATTGTCCTGGTTGTA+AGG | 0.386628 | 8_4:-29404488 | Msa1322400:CDS |
| TTATCCCAAAAGGAACCCTT+TGG | 0.400052 | 8_4:+29401792 | None:intergenic |
| CGAAAACCTGTTATAGTCAT+TGG | 0.412171 | 8_4:-29402979 | Msa1322400:CDS |
| GTGATTCGAGCAATGTTAAC+AGG | 0.415919 | 8_4:+29401017 | None:intergenic |
| ATATTTGGATATTTCTCTGC+TGG | 0.421967 | 8_4:+29401819 | None:intergenic |
| ATGTCTCTATTCAAAGCTAT+TGG | 0.422437 | 8_4:-29400442 | Msa1322400:CDS |
| ATGTCCCCAAGCACAATTGT+AGG | 0.422522 | 8_4:-29399192 | Msa1322400:three_prime_UTR |
| TATAGTCCTACCCAGATTAG+AGG | 0.423673 | 8_4:+29399162 | None:intergenic |
| CACCAAAGAGGAGCAGCTAA+TGG | 0.424168 | 8_4:-29400481 | Msa1322400:CDS |
| AAGCAAATGAAAAGCTATAG+AGG | 0.424418 | 8_4:-29399477 | Msa1322400:three_prime_UTR |
| AAGTCCCTACAATTGTGCTT+GGG | 0.446665 | 8_4:+29399187 | None:intergenic |
| TATAGAAAATGGAAGCATAA+AGG | 0.454633 | 8_4:-29401467 | Msa1322400:CDS |
| CCCTTCATAGCAATGTTGTC+AGG | 0.454765 | 8_4:-29400871 | Msa1322400:CDS |
| AACTCCTGATATTATGAAGC+AGG | 0.459270 | 8_4:+29401659 | None:intergenic |
| GTTAACATTGCTCGAATCAC+AGG | 0.464230 | 8_4:-29401014 | Msa1322400:CDS |
| CAGGAGTTATGTAGTATCAC+AGG | 0.464329 | 8_4:-29399587 | Msa1322400:three_prime_UTR |
| GCCTGACAACATTGCTATGA+AGG | 0.464502 | 8_4:+29400870 | None:intergenic |
| AAGGAATAAACCTGTTGTAA+TGG | 0.468522 | 8_4:+29400669 | None:intergenic |
| AGCTACTATGCTGGCTATGT+AGG | 0.471772 | 8_4:-29403155 | Msa1322400:intron |
| ATGATGTTCAAACCATTCCT+TGG | 0.480456 | 8_4:-29399662 | Msa1322400:CDS |
| CGAGAAGAACACCAAGCTCT+AGG | 0.480505 | 8_4:-29402516 | Msa1322400:CDS |
| ATGAAGCAGGGCAAGAAGTA+AGG | 0.481618 | 8_4:+29401672 | None:intergenic |
| GACATCTGTATTATGGGGAA+TGG | 0.486093 | 8_4:-29403019 | Msa1322400:CDS |
| TTTAACTGCAGGCACCCATA+TGG | 0.489334 | 8_4:-29399726 | Msa1322400:intron |
| AGCTTCAGCATCATCTATGA+TGG | 0.493611 | 8_4:+29401489 | None:intergenic |
| CTGTTAGTCCTCTAAATTTG+GGG | 0.496551 | 8_4:-29401232 | Msa1322400:CDS |
| TAAGTCCCTACAATTGTGCT+TGG | 0.496968 | 8_4:+29399186 | None:intergenic |
| GTTGAAAGGAAAGAGAATGC+TGG | 0.498816 | 8_4:-29399450 | Msa1322400:three_prime_UTR |
| TATATTGGTATATTGTAAGT+TGG | 0.500955 | 8_4:+29401057 | None:intergenic |
| AAATATGAGAGAGCCATTGT+TGG | 0.503789 | 8_4:-29404527 | Msa1322400:CDS |
| ACTTAGGTGACCATTACAAC+AGG | 0.504930 | 8_4:-29400679 | Msa1322400:intron |
| TATTGCTTCTTCTCCAACAA+TGG | 0.512437 | 8_4:+29404514 | None:intergenic |
| TAGTAGTTATTGCCTGCTTG+TGG | 0.513431 | 8_4:-29401629 | Msa1322400:CDS |
| GTCCACTTACTTATCCCAAA+AGG | 0.515628 | 8_4:+29401782 | None:intergenic |
| GCAATGATAGATGACATAAA+GGG | 0.520373 | 8_4:+29401394 | None:intergenic |
| TGGCGCAATTGGACCAGTAA+AGG | 0.522697 | 8_4:-29402736 | Msa1322400:intron |
| TATCCAAATATCTTTCCAAA+GGG | 0.526914 | 8_4:-29401807 | Msa1322400:CDS |
| ATGGATGCTTCTTTCCTCCC+AGG | 0.527092 | 8_4:-29399987 | Msa1322400:intron |
| GTCATTATTTAGGACAGTGA+TGG | 0.528954 | 8_4:-29399564 | Msa1322400:three_prime_UTR |
| TCAAATTTATATTAATAGAA+GGG | 0.537660 | 8_4:+29399214 | None:intergenic |
| CTGTTGAGAGTCCTAGAGCT+TGG | 0.540220 | 8_4:+29402505 | None:intergenic |
| GCTATAGAGGGATAGTTGAA+AGG | 0.540327 | 8_4:-29399464 | Msa1322400:three_prime_UTR |
| CCTGACAACATTGCTATGAA+GGG | 0.540798 | 8_4:+29400871 | None:intergenic |
| AAGGGGTAACTTTGCAACAA+TGG | 0.549893 | 8_4:+29400889 | None:intergenic |
| AAAGCTATTGGACCTGCCGC+AGG | 0.553060 | 8_4:-29400430 | Msa1322400:CDS |
| GTAGGATCATCATTCATGCT+TGG | 0.553411 | 8_4:-29403051 | Msa1322400:intron |
| GTTAGTCCTCTAAATTTGGG+GGG | 0.555025 | 8_4:-29401230 | Msa1322400:CDS |
| TGTTAGTCCTCTAAATTTGG+GGG | 0.556819 | 8_4:-29401231 | Msa1322400:CDS |
| CAAGAGAAATGAATCTCAAG+TGG | 0.563545 | 8_4:-29399306 | Msa1322400:three_prime_UTR |
| ATATCCAAATATCTTTCCAA+AGG | 0.563619 | 8_4:-29401808 | Msa1322400:CDS |
| CACATTGTACCACCTGCGGC+AGG | 0.564825 | 8_4:+29400418 | None:intergenic |
| CAATACTACAAGGATTGTCC+TGG | 0.565609 | 8_4:-29404496 | Msa1322400:CDS |
| TTGGTCAATACAGATTAACT+TGG | 0.565896 | 8_4:-29400022 | Msa1322400:intron |
| TAAAGGGCCAATTCATCAAG+AGG | 0.566648 | 8_4:+29401410 | None:intergenic |
| AGCAAATGAAAAGCTATAGA+GGG | 0.567993 | 8_4:-29399476 | Msa1322400:three_prime_UTR |
| ACACACAATATTCATGAGGA+TGG | 0.568497 | 8_4:+29400816 | None:intergenic |
| ATAGTAGCTAATATCAGCCT+CGG | 0.569820 | 8_4:+29403169 | None:intergenic |
| TTAACATTGCTCGAATCACA+GGG | 0.570393 | 8_4:-29401013 | Msa1322400:CDS |
| AACTTGGTCACAAAAGCGTA+TGG | 0.570630 | 8_4:-29400006 | Msa1322400:CDS |
| CTCACCATGAAATAAAGGAA+TGG | 0.574296 | 8_4:+29403514 | None:intergenic |
| TCATGATATTGCTTATCAAG+AGG | 0.581145 | 8_4:-29401353 | Msa1322400:intron |
| TTATAAAGGTTATGACCAGA+AGG | 0.590534 | 8_4:+29399352 | None:intergenic |
| TGAATACACTTACCACTGCT+CGG | 0.594002 | 8_4:+29400638 | None:intergenic |
| AGGGACTTATCCTCTAATCT+GGG | 0.595810 | 8_4:-29399172 | Msa1322400:three_prime_UTR |
| ACTCCTGATATTATGAAGCA+GGG | 0.598947 | 8_4:+29401660 | None:intergenic |
| TTGGAGTCATGATTCTCAAG+TGG | 0.599560 | 8_4:-29399407 | Msa1322400:three_prime_UTR |
| GCTTGGTCAACCTTACAACC+AGG | 0.599602 | 8_4:+29404478 | None:intergenic |
| GCTGATATTAGCTACTATGC+TGG | 0.603154 | 8_4:-29403164 | Msa1322400:CDS |
| AGTCCCTACAATTGTGCTTG+GGG | 0.605996 | 8_4:+29399188 | None:intergenic |
| TGTCCCCAAGCACAATTGTA+GGG | 0.606014 | 8_4:-29399191 | Msa1322400:three_prime_UTR |
| GGAATGGTTTCTGATCGCTA+TGG | 0.618861 | 8_4:-29403003 | Msa1322400:CDS |
| TAGAAGGGTAATAATGCAAG+TGG | 0.619140 | 8_4:+29399229 | None:intergenic |
| ACTTATCCTCTAATCTGGGT+AGG | 0.621846 | 8_4:-29399168 | Msa1322400:three_prime_UTR |
| GCTATTGGACCTGCCGCAGG+TGG | 0.624900 | 8_4:-29400427 | Msa1322400:CDS |
| AACTCACATTGTACCACCTG+CGG | 0.630586 | 8_4:+29400414 | None:intergenic |
| AAACAGGAACAACACCAAAG+AGG | 0.630869 | 8_4:-29400493 | Msa1322400:intron |
| ACTTTGACATCTGTATTATG+GGG | 0.630925 | 8_4:-29403024 | Msa1322400:CDS |
| AAGAGAAATGAATCTCAAGT+GGG | 0.631914 | 8_4:-29399305 | Msa1322400:three_prime_UTR |
| AACTTCACAACTGATGATGT+CGG | 0.634201 | 8_4:-29401203 | Msa1322400:CDS |
| GGAGAAGAAGCAATACTACA+AGG | 0.641228 | 8_4:-29404506 | Msa1322400:CDS |
| ACATACCGGAATCCACAAGC+AGG | 0.647969 | 8_4:+29401617 | None:intergenic |
| CTGACAACATTGCTATGAAG+GGG | 0.657130 | 8_4:+29400872 | None:intergenic |
| TTACACACACAATATTCATG+AGG | 0.676661 | 8_4:+29400812 | None:intergenic |
| AGGAGTTATGTAGTATCACA+GGG | 0.681228 | 8_4:-29399586 | Msa1322400:three_prime_UTR |
| CCTTATACAGAACCGAGCAG+TGG | 0.682906 | 8_4:-29400650 | Msa1322400:intron |
| GAAACACTTCACAAACACAA+TGG | 0.696564 | 8_4:-29401523 | Msa1322400:CDS |
| CAAGCAAAAGAGCTTAACCA+AGG | 0.710227 | 8_4:-29404460 | Msa1322400:intron |
| TAACATTGCTCGAATCACAG+GGG | 0.777198 | 8_4:-29401012 | Msa1322400:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATGAAAATGAAAT+TGG | + | chr8_4:29400196-29400215 | None:intergenic | 10.0% |
| !!! | AATATTAAGAATACAATTTT+TGG | - | chr8_4:29400398-29400417 | Msa1322400:intron | 10.0% |
| !!! | TAAGAAAATATTCTTTTTTT+AGG | - | chr8_4:29401416-29401435 | Msa1322400:CDS | 10.0% |
| !!! | CTTATTATATATATGTTTTT+TGG | - | chr8_4:29402377-29402396 | Msa1322400:intron | 10.0% |
| !!! | ATTTTTTATTTTGAAGAAAA+TGG | + | chr8_4:29403074-29403093 | None:intergenic | 10.0% |
| !! | TCAAATTTATATTAATAGAA+GGG | + | chr8_4:29404464-29404483 | None:intergenic | 10.0% |
| !! | ATCAAATTTATATTAATAGA+AGG | + | chr8_4:29404465-29404484 | None:intergenic | 10.0% |
| !! | TTATTCATATACATACAAAA+AGG | + | chr8_4:29400293-29400312 | None:intergenic | 15.0% |
| !! | TTTGTATGTATATGAATAAT+TGG | - | chr8_4:29400294-29400313 | Msa1322400:intron | 15.0% |
| !!! | TATATCATAGTTATTTTCTA+CGG | + | chr8_4:29400776-29400795 | None:intergenic | 15.0% |
| !!! | ATTAACATCTTTTTTTTTTG+AGG | - | chr8_4:29400977-29400996 | Msa1322400:intron | 15.0% |
| !!! | CACAATTTTAATTATTATGA+TGG | + | chr8_4:29401372-29401391 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGATTCTTTTTTT+AGG | + | chr8_4:29401505-29401524 | None:intergenic | 15.0% |
| !!! | GGTAAATTTTTTAATCAATA+AGG | - | chr8_4:29402343-29402362 | Msa1322400:intron | 15.0% |
| !!! | AGAGTTTAAGATATATTAAA+TGG | - | chr8_4:29402931-29402950 | Msa1322400:intron | 15.0% |
| !!! | GAAATCATTTTTTTTTTGAA+AGG | + | chr8_4:29403581-29403600 | None:intergenic | 15.0% |
| !! | AAGTTGAAACAAATTTATAA+AGG | + | chr8_4:29404340-29404359 | None:intergenic | 15.0% |
| !!! | TATGACGAAAAGATTTTTAA+TGG | + | chr8_4:29399246-29399265 | None:intergenic | 20.0% |
| !!! | TTAAAAATCTTTTCGTCATA+TGG | - | chr8_4:29399246-29399265 | Msa1322400:three_prime_UTR | 20.0% |
| !! | TTGTAAAAAGAGAAAAAATG+TGG | - | chr8_4:29399637-29399656 | Msa1322400:CDS | 20.0% |
| !! | TGTAAAAAGAGAAAAAATGT+GGG | - | chr8_4:29399638-29399657 | Msa1322400:CDS | 20.0% |
| !!! | TAAGAATACAATTTTTGGTT+AGG | - | chr8_4:29400403-29400422 | Msa1322400:intron | 20.0% |
| !!! | AACATTTATTTTTCAGGTAA+GGG | - | chr8_4:29400465-29400484 | Msa1322400:CDS | 20.0% |
| !! | TGTATTGTTAAAACTAAAAG+GGG | + | chr8_4:29401344-29401363 | None:intergenic | 20.0% |
| !! | CTGTATTGTTAAAACTAAAA+GGG | + | chr8_4:29401345-29401364 | None:intergenic | 20.0% |
| !! | TATTCAATTGAAAAGTTTGA+AGG | - | chr8_4:29401658-29401677 | Msa1322400:CDS | 20.0% |
| !! | ATTTCAAAAGACCATTTATT+TGG | + | chr8_4:29401718-29401737 | None:intergenic | 20.0% |
| !! | ATTAATCTCTCTAATACTTT+GGG | - | chr8_4:29401817-29401836 | Msa1322400:CDS | 20.0% |
| !!! | AAATGATTTGTTGTGAAAAA+TGG | + | chr8_4:29401974-29401993 | None:intergenic | 20.0% |
| !! | TATATTGGTATATTGTAAGT+TGG | + | chr8_4:29402621-29402640 | None:intergenic | 20.0% |
| !! | ACTTACAATATACCAATATA+TGG | - | chr8_4:29402621-29402640 | Msa1322400:intron | 20.0% |
| !!! | ACTGATTATATCCTTTTTTA+TGG | - | chr8_4:29402973-29402992 | Msa1322400:CDS | 20.0% |
| !!! | TTTTGTTTTCTTACAAAGTT+TGG | - | chr8_4:29403121-29403140 | Msa1322400:intron | 20.0% |
| !!! | TTGAATGTACATTTCTAAAA+AGG | - | chr8_4:29403314-29403333 | Msa1322400:intron | 20.0% |
| !!! | TTACAGTTAATTTAGGTTTA+TGG | + | chr8_4:29403850-29403869 | None:intergenic | 20.0% |
| !! | AGGTTATTTACAGTTAATTT+AGG | + | chr8_4:29403857-29403876 | None:intergenic | 20.0% |
| !! | CTATGTAAGTTATAATGTTT+AGG | - | chr8_4:29404412-29404431 | Msa1322400:intron | 20.0% |
| !! | CTTTCCAATTTTTGTTCATT+AGG | - | chr8_4:29399345-29399364 | Msa1322400:three_prime_UTR | 25.0% |
| ! | AAGTCCTAATGAACAAAAAT+TGG | + | chr8_4:29399352-29399371 | None:intergenic | 25.0% |
| !! | CATTTGAGTTTCCTTTATTT+AGG | - | chr8_4:29399607-29399626 | Msa1322400:exon | 25.0% |
| !! | ACAAACTTTTGCCTAAATAA+AGG | + | chr8_4:29399621-29399640 | None:intergenic | 25.0% |
| ! | TGTAATCAATAAGAGAGAAT+AGG | - | chr8_4:29399767-29399786 | Msa1322400:intron | 25.0% |
| ! | AATAATTAGCTATCCAATGT+GGG | + | chr8_4:29399846-29399865 | None:intergenic | 25.0% |
| ! | AAATAATTAGCTATCCAATG+TGG | + | chr8_4:29399847-29399866 | None:intergenic | 25.0% |
| !!! | TTTTCCATTCCTTTATTTCA+TGG | - | chr8_4:29400157-29400176 | Msa1322400:intron | 25.0% |
| ! | ATAAACTCACCATGAAATAA+AGG | + | chr8_4:29400169-29400188 | None:intergenic | 25.0% |
| !!! | TGATGCAACATTTATTTTTC+AGG | - | chr8_4:29400459-29400478 | Msa1322400:CDS | 25.0% |
| !!! | CAACATTTATTTTTCAGGTA+AGG | - | chr8_4:29400464-29400483 | Msa1322400:CDS | 25.0% |
| !!! | TTTTAAAATTGCAAAATCCG+AGG | - | chr8_4:29400489-29400508 | Msa1322400:CDS | 25.0% |
| ! | ATGATGATTGAAAATGTTGT+AGG | - | chr8_4:29400606-29400625 | Msa1322400:intron | 25.0% |
| ! | AACTTTGACATCTGTATTAT+GGG | - | chr8_4:29400650-29400669 | Msa1322400:intron | 25.0% |
| !! | TGTTATCACAAGATTTCTTT+TGG | - | chr8_4:29400906-29400925 | Msa1322400:intron | 25.0% |
| !! | GTTATCACAAGATTTCTTTT+GGG | - | chr8_4:29400907-29400926 | Msa1322400:intron | 25.0% |
| !!! | TTTCTTTTGGGAACTTTAAA+TGG | - | chr8_4:29400919-29400938 | Msa1322400:intron | 25.0% |
| ! | GCTGTATTGTTAAAACTAAA+AGG | + | chr8_4:29401346-29401365 | None:intergenic | 25.0% |
| !!! | TATTTTCTTACATTTGAGAC+CGG | + | chr8_4:29401406-29401425 | None:intergenic | 25.0% |
| ! | TCAATTGAATACAAAGTTTC+AGG | + | chr8_4:29401649-29401668 | None:intergenic | 25.0% |
| !! | ATTTTCCATGACCAAATAAA+TGG | - | chr8_4:29401704-29401723 | Msa1322400:intron | 25.0% |
| ! | CATTAATCTCTCTAATACTT+TGG | - | chr8_4:29401816-29401835 | Msa1322400:CDS | 25.0% |
| ! | ATATCCAAATATCTTTCCAA+AGG | - | chr8_4:29401867-29401886 | Msa1322400:intron | 25.0% |
| ! | TATCCAAATATCTTTCCAAA+GGG | - | chr8_4:29401868-29401887 | Msa1322400:intron | 25.0% |
| !!! | CGGTTTTATCATATGTTTTA+TGG | - | chr8_4:29402086-29402105 | Msa1322400:intron | 25.0% |
| ! | TAATTGTTTAAACTACATGC+AGG | - | chr8_4:29402130-29402149 | Msa1322400:intron | 25.0% |
| !! | TATAGAAAATGGAAGCATAA+AGG | - | chr8_4:29402208-29402227 | Msa1322400:intron | 25.0% |
| !!! | TACTAACTTGTGAAATTTTC+AGG | - | chr8_4:29402577-29402596 | Msa1322400:intron | 25.0% |
| ! | CTCTCAATATTAGTCATAAA+TGG | + | chr8_4:29402915-29402934 | None:intergenic | 25.0% |
| ! | AGGATATAATCAGTCAAATT+TGG | + | chr8_4:29402967-29402986 | None:intergenic | 25.0% |
| !!! | ATATCCTTTTTTATGGACTT+AGG | - | chr8_4:29402980-29402999 | Msa1322400:CDS | 25.0% |
| !! | AGTTTGGTATTAGATTTTGA+TGG | - | chr8_4:29403137-29403156 | Msa1322400:intron | 25.0% |
| !!! | GGAATTTTGACATATTGATT+TGG | - | chr8_4:29403158-29403177 | Msa1322400:CDS | 25.0% |
| ! | TACCAATCTTCTTTATGATA+TGG | - | chr8_4:29403410-29403429 | Msa1322400:intron | 25.0% |
| ! | AAAAAACAATCAAGTTTCAG+AGG | + | chr8_4:29403437-29403456 | None:intergenic | 25.0% |
| ! | AAAAACTTGTCAATTGCAAA+TGG | + | chr8_4:29403519-29403538 | None:intergenic | 25.0% |
| ! | TATCATGAGAAGAAAGTTAA+AGG | + | chr8_4:29403633-29403652 | None:intergenic | 25.0% |
| ! | TAACTTTCTTCTCATGATAT+TGG | - | chr8_4:29403634-29403653 | Msa1322400:intron | 25.0% |
| ! | TAAGCACTTATAAACCATTT+AGG | - | chr8_4:29403745-29403764 | Msa1322400:intron | 25.0% |
| ! | AAGCACTTATAAACCATTTA+GGG | - | chr8_4:29403746-29403765 | Msa1322400:intron | 25.0% |
| !! | GATTTTTAATGGATACACCT+TGG | + | chr8_4:29399235-29399254 | None:intergenic | 30.0% |
| ! | AAATCTTTTCGTCATATGGA+TGG | - | chr8_4:29399250-29399269 | Msa1322400:three_prime_UTR | 30.0% |
| ACAACAAAAGATTCAATCTG+TGG | + | chr8_4:29399716-29399735 | None:intergenic | 30.0% | |
| AATCCCTGTATTTCTTACTA+GGG | + | chr8_4:29400007-29400026 | None:intergenic | 30.0% | |
| AAATCCCTGTATTTCTTACT+AGG | + | chr8_4:29400008-29400027 | None:intergenic | 30.0% | |
| AAAAAGAGACATATCAGAGA+AGG | + | chr8_4:29400102-29400121 | None:intergenic | 30.0% | |
| CAAAAAGGATACTCAAAAAC+TGG | + | chr8_4:29400278-29400297 | None:intergenic | 30.0% | |
| TGTTAAATGACTTCAAAGAG+TGG | + | chr8_4:29400566-29400585 | None:intergenic | 30.0% | |
| GAACTTTGACATCTGTATTA+TGG | - | chr8_4:29400649-29400668 | Msa1322400:intron | 30.0% | |
| ACTTTGACATCTGTATTATG+GGG | - | chr8_4:29400651-29400670 | Msa1322400:CDS | 30.0% | |
| AAAACACCAATGACTATAAC+AGG | + | chr8_4:29400705-29400724 | None:intergenic | 30.0% | |
| AAAACTTGTAGTACCTTTAC+TGG | + | chr8_4:29400955-29400974 | None:intergenic | 30.0% | |
| ! | AATTTTTCATCTATTGCGCT+AGG | - | chr8_4:29401013-29401032 | Msa1322400:CDS | 30.0% |
| AGAAAACTCCTCTATTTAAC+AGG | - | chr8_4:29401116-29401135 | Msa1322400:intron | 30.0% | |
| !! | TTTTCAACTTCGGTTTGAAA+GGG | + | chr8_4:29401315-29401334 | None:intergenic | 30.0% |
| ! | TCTTTTCTTACATATGAGAC+CGG | - | chr8_4:29401515-29401534 | Msa1322400:CDS | 30.0% |
| !!! | GAGTATGGTTTTATGGTTTT+AGG | - | chr8_4:29401541-29401560 | Msa1322400:intron | 30.0% |
| AAAGACCATTTATTTGGTCA+TGG | + | chr8_4:29401712-29401731 | None:intergenic | 30.0% | |
| ATATTTGGATATTTCTCTGC+TGG | + | chr8_4:29401859-29401878 | None:intergenic | 30.0% | |
| TTGAATACTTAGTGTCTGTT+TGG | + | chr8_4:29401929-29401948 | None:intergenic | 30.0% | |
| AGACACTAAGTATTCAACTA+TGG | - | chr8_4:29401932-29401951 | Msa1322400:intron | 30.0% | |
| GAAAAATGGAAATCCACATA+TGG | + | chr8_4:29401960-29401979 | None:intergenic | 30.0% | |
| ! | TTCACAACAAATCATTTTGC+AGG | - | chr8_4:29401977-29401996 | Msa1322400:intron | 30.0% |
| ATAAAACCGATGATACATAC+CGG | + | chr8_4:29402075-29402094 | None:intergenic | 30.0% | |
| ATGAAAACCTCTTGATGAAT+TGG | - | chr8_4:29402258-29402277 | Msa1322400:intron | 30.0% | |
| GCAATGATAGATGACATAAA+GGG | + | chr8_4:29402284-29402303 | None:intergenic | 30.0% | |
| AGCAATGATAGATGACATAA+AGG | + | chr8_4:29402285-29402304 | None:intergenic | 30.0% | |
| TCATGATATTGCTTATCAAG+AGG | - | chr8_4:29402322-29402341 | Msa1322400:intron | 30.0% | |
| ACAAAGAGAAAACCTAAAGA+AGG | + | chr8_4:29402420-29402439 | None:intergenic | 30.0% | |
| !! | TTCTTTAGGTTTTCTCTTTG+TGG | - | chr8_4:29402419-29402438 | Msa1322400:intron | 30.0% |
| TCTGTTAGTCCTCTAAATTT+GGG | - | chr8_4:29402442-29402461 | Msa1322400:intron | 30.0% | |
| !! | CACAAGCTTTTTCCATATAT+TGG | + | chr8_4:29402636-29402655 | None:intergenic | 30.0% |
| CAATATATGGAAAAAGCTTG+TGG | - | chr8_4:29402634-29402653 | Msa1322400:intron | 30.0% | |
| GTTTCATCTGATTATGGTAA+TGG | - | chr8_4:29402689-29402708 | Msa1322400:intron | 30.0% | |
| GTATAGAAAAAATCTGCACA+TGG | + | chr8_4:29402767-29402786 | None:intergenic | 30.0% | |
| TTACACACACAATATTCATG+AGG | + | chr8_4:29402866-29402885 | None:intergenic | 30.0% | |
| AAGGAATAAACCTGTTGTAA+TGG | + | chr8_4:29403009-29403028 | None:intergenic | 30.0% | |
| !! | GACATATTGATTTGGAAAAC+AGG | - | chr8_4:29403166-29403185 | Msa1322400:CDS | 30.0% |
| ATGTCTCTATTCAAAGCTAT+TGG | - | chr8_4:29403233-29403252 | Msa1322400:intron | 30.0% | |
| AAACTTGCACATTAATGTAC+AGG | - | chr8_4:29403364-29403383 | Msa1322400:intron | 30.0% | |
| GACCATATCATAAAGAAGAT+TGG | + | chr8_4:29403415-29403434 | None:intergenic | 30.0% | |
| CAATTGCAAATGGATCAAAA+AGG | + | chr8_4:29403509-29403528 | None:intergenic | 30.0% | |
| TTGGTCAATACAGATTAACT+TGG | - | chr8_4:29403653-29403672 | Msa1322400:intron | 30.0% | |
| TATAAACCATTTAGGGAATG+TGG | - | chr8_4:29403753-29403772 | Msa1322400:intron | 30.0% | |
| AAGGAAGAAAAAGACCATAT+GGG | + | chr8_4:29403966-29403985 | None:intergenic | 30.0% | |
| TAAGGAAGAAAAAGACCATA+TGG | + | chr8_4:29403967-29403986 | None:intergenic | 30.0% | |
| ! | GGTCTTTTTCTTCCTTAATT+TGG | - | chr8_4:29403970-29403989 | Msa1322400:intron | 30.0% |
| ! | TTCTTCCTTAATTTGGTTGA+AGG | - | chr8_4:29403977-29403996 | Msa1322400:intron | 30.0% |
| AAGCAAATGAAAAGCTATAG+AGG | - | chr8_4:29404198-29404217 | Msa1322400:intron | 30.0% | |
| AGCAAATGAAAAGCTATAGA+GGG | - | chr8_4:29404199-29404218 | Msa1322400:intron | 30.0% | |
| TTATAAAGGTTATGACCAGA+AGG | + | chr8_4:29404326-29404345 | None:intergenic | 30.0% | |
| AAGAGAAATGAATCTCAAGT+GGG | - | chr8_4:29404370-29404389 | Msa1322400:intron | 30.0% | |
| AAATATGAGAGAGCCATTGT+TGG | - | chr8_4:29399148-29399167 | Msa1322400:three_prime_UTR | 35.0% | |
| TATTGCTTCTTCTCCAACAA+TGG | + | chr8_4:29399164-29399183 | None:intergenic | 35.0% | |
| AGATCTTGAAAAAGTTCGTG+CGG | - | chr8_4:29399558-29399577 | Msa1322400:three_prime_UTR | 35.0% | |
| AAAAAATGTGGGTGTGTATG+TGG | - | chr8_4:29399649-29399668 | Msa1322400:CDS | 35.0% | |
| GTTAATTGCTAATCCCACAT+TGG | - | chr8_4:29399830-29399849 | Msa1322400:intron | 35.0% | |
| AGTACCCTAGTAAGAAATAC+AGG | - | chr8_4:29400000-29400019 | Msa1322400:CDS | 35.0% | |
| GTACCCTAGTAAGAAATACA+GGG | - | chr8_4:29400001-29400020 | Msa1322400:CDS | 35.0% | |
| ! | AATGGAAAAAGTGATGATGC+AGG | + | chr8_4:29400146-29400165 | None:intergenic | 35.0% |
| CTCACCATGAAATAAAGGAA+TGG | + | chr8_4:29400164-29400183 | None:intergenic | 35.0% | |
| ATAATTGGTCCTGTAAGTGT+TGG | - | chr8_4:29400309-29400328 | Msa1322400:intron | 35.0% | |
| ATAGTAGCTAATATCAGCCT+CGG | + | chr8_4:29400509-29400528 | None:intergenic | 35.0% | |
| CGAAAACCTGTTATAGTCAT+TGG | - | chr8_4:29400696-29400715 | Msa1322400:intron | 35.0% | |
| !!! | TTGGCCTTAGTACAAGTTTT+TGG | - | chr8_4:29400878-29400897 | Msa1322400:CDS | 35.0% |
| CCATCCAAAAACTTGTACTA+AGG | + | chr8_4:29400885-29400904 | None:intergenic | 35.0% | |
| !! | CCTTAGTACAAGTTTTTGGA+TGG | - | chr8_4:29400882-29400901 | Msa1322400:CDS | 35.0% |
| ATTGAACCAGTTATGTATCC+AGG | + | chr8_4:29401056-29401075 | None:intergenic | 35.0% | |
| AGCATAAGCCTGTTAAATAG+AGG | + | chr8_4:29401127-29401146 | None:intergenic | 35.0% | |
| !! | GTTTTCAACTTCGGTTTGAA+AGG | + | chr8_4:29401316-29401335 | None:intergenic | 35.0% |
| GTTAAAACTAAAAGGGGACA+CGG | + | chr8_4:29401338-29401357 | None:intergenic | 35.0% | |
| AAATTGTGATATACTCCCTC+CGG | - | chr8_4:29401384-29401403 | Msa1322400:CDS | 35.0% | |
| TTTAATCATTGGACCAGCAT+TGG | - | chr8_4:29401586-29401605 | Msa1322400:intron | 35.0% | |
| TTAATCATTGGACCAGCATT+GGG | - | chr8_4:29401587-29401606 | Msa1322400:intron | 35.0% | |
| ! | GAACCCTTTGGAAAGATATT+TGG | + | chr8_4:29401874-29401893 | None:intergenic | 35.0% |
| !!! | TTCCTTTTGGGATAAGTAAG+TGG | - | chr8_4:29401891-29401910 | Msa1322400:intron | 35.0% |
| TTCAACTATGGTTCCATATG+TGG | - | chr8_4:29401944-29401963 | Msa1322400:intron | 35.0% | |
| ACTCCTGATATTATGAAGCA+GGG | + | chr8_4:29402018-29402037 | None:intergenic | 35.0% | |
| AACTCCTGATATTATGAAGC+AGG | + | chr8_4:29402019-29402038 | None:intergenic | 35.0% | |
| GAAACACTTCACAAACACAA+TGG | - | chr8_4:29402152-29402171 | Msa1322400:intron | 35.0% | |
| GATGCTGAAGCTATAGAAAA+TGG | - | chr8_4:29402197-29402216 | Msa1322400:intron | 35.0% | |
| CATGCTTGTTTACCTTCTTT+AGG | - | chr8_4:29402405-29402424 | Msa1322400:intron | 35.0% | |
| GTCTGTTAGTCCTCTAAATT+TGG | - | chr8_4:29402441-29402460 | Msa1322400:intron | 35.0% | |
| CTGTTAGTCCTCTAAATTTG+GGG | - | chr8_4:29402443-29402462 | Msa1322400:intron | 35.0% | |
| TGTTAGTCCTCTAAATTTGG+GGG | - | chr8_4:29402444-29402463 | Msa1322400:intron | 35.0% | |
| ! | AACTTCACAACTGATGATGT+CGG | - | chr8_4:29402472-29402491 | Msa1322400:intron | 35.0% |
| GGTAATGTTCTTGCAATTAC+AGG | - | chr8_4:29402493-29402512 | Msa1322400:intron | 35.0% | |
| TGCAATTACAGGTGCATATT+CGG | - | chr8_4:29402504-29402523 | Msa1322400:intron | 35.0% | |
| TTAACATTGCTCGAATCACA+GGG | - | chr8_4:29402662-29402681 | Msa1322400:intron | 35.0% | |
| !! | GGGTTAGTTTCATCTGATTA+TGG | - | chr8_4:29402683-29402702 | Msa1322400:intron | 35.0% |
| ACACACAATATTCATGAGGA+TGG | + | chr8_4:29402862-29402881 | None:intergenic | 35.0% | |
| GTCACCTAAGTCCATAAAAA+AGG | + | chr8_4:29402987-29403006 | None:intergenic | 35.0% | |
| GTTTAACCACATTCCCTAAA+TGG | + | chr8_4:29403762-29403781 | None:intergenic | 35.0% | |
| AAGTGGTTGTTTGAGTGTTA+AGG | + | chr8_4:29403819-29403838 | None:intergenic | 35.0% | |
| TTATTATACGCGTTTGGAAG+AGG | + | chr8_4:29403877-29403896 | None:intergenic | 35.0% | |
| TTCCAAACGCGTATAATAAG+AGG | - | chr8_4:29403878-29403897 | Msa1322400:intron | 35.0% | |
| ACTATTGTGCATTTAACTGC+AGG | - | chr8_4:29403938-29403957 | Msa1322400:intron | 35.0% | |
| CAAGTCCTTCAACCAAATTA+AGG | + | chr8_4:29403985-29404004 | None:intergenic | 35.0% | |
| ! | CTTAATTTGGTTGAAGGACT+TGG | - | chr8_4:29403983-29404002 | Msa1322400:intron | 35.0% |
| ATGATGTTCAAACCATTCCT+TGG | - | chr8_4:29404013-29404032 | Msa1322400:intron | 35.0% | |
| ! | TTCTTCTTTTCACCAAGGAA+TGG | + | chr8_4:29404028-29404047 | None:intergenic | 35.0% |
| ! | GTGTTTTCTTCTTTTCACCA+AGG | + | chr8_4:29404033-29404052 | None:intergenic | 35.0% |
| AGGAGTTATGTAGTATCACA+GGG | - | chr8_4:29404089-29404108 | Msa1322400:intron | 35.0% | |
| GTATCACAGGGTCATTATTT+AGG | - | chr8_4:29404101-29404120 | Msa1322400:intron | 35.0% | |
| ! | GTCATTATTTAGGACAGTGA+TGG | - | chr8_4:29404111-29404130 | Msa1322400:intron | 35.0% |
| AGCTATTGTGCTTCTCTTAT+TGG | - | chr8_4:29404249-29404268 | Msa1322400:intron | 35.0% | |
| AAATAACTGCATTGTCCTTC+TGG | - | chr8_4:29404308-29404327 | Msa1322400:intron | 35.0% | |
| CAAGAGAAATGAATCTCAAG+TGG | - | chr8_4:29404369-29404388 | Msa1322400:intron | 35.0% | |
| TAGAAGGGTAATAATGCAAG+TGG | + | chr8_4:29404449-29404468 | None:intergenic | 35.0% | |
| GGAGAAGAAGCAATACTACA+AGG | - | chr8_4:29399169-29399188 | Msa1322400:three_prime_UTR | 40.0% | |
| CAATACTACAAGGATTGTCC+TGG | - | chr8_4:29399179-29399198 | Msa1322400:three_prime_UTR | 40.0% | |
| ! | CTTGGTTAAGCTCTTTTGCT+TGG | + | chr8_4:29399217-29399236 | None:intergenic | 40.0% |
| CAAGCAAAAGAGCTTAACCA+AGG | - | chr8_4:29399215-29399234 | Msa1322400:three_prime_UTR | 40.0% | |
| GCTGATTAATACTCCGAGAT+TGG | + | chr8_4:29399471-29399490 | None:intergenic | 40.0% | |
| ATGCAACTATGCAAGTTAGG+TGG | + | chr8_4:29399927-29399946 | None:intergenic | 40.0% | |
| GCAATGCAACTATGCAAGTT+AGG | + | chr8_4:29399930-29399949 | None:intergenic | 40.0% | |
| TACAACAGACCAACACTTAC+AGG | + | chr8_4:29400321-29400340 | None:intergenic | 40.0% | |
| GCTGATATTAGCTACTATGC+TGG | - | chr8_4:29400511-29400530 | Msa1322400:intron | 40.0% | |
| GTAGGATCATCATTCATGCT+TGG | - | chr8_4:29400624-29400643 | Msa1322400:intron | 40.0% | |
| GACATCTGTATTATGGGGAA+TGG | - | chr8_4:29400656-29400675 | Msa1322400:CDS | 40.0% | |
| ! | GTCGTTCTCAACACACTTTT+TGG | - | chr8_4:29400859-29400878 | Msa1322400:CDS | 40.0% |
| GGAACTTTAAATGGCGCAAT+TGG | - | chr8_4:29400928-29400947 | Msa1322400:intron | 40.0% | |
| ! | GACTTTTGAATGTGTACACC+TGG | - | chr8_4:29401035-29401054 | Msa1322400:CDS | 40.0% |
| TGTACACCTGGATACATAAC+TGG | - | chr8_4:29401047-29401066 | Msa1322400:CDS | 40.0% | |
| ! | TATGCATTTGAAGCTGCATC+AGG | - | chr8_4:29401277-29401296 | Msa1322400:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr8_4:29401402-29401421 | None:intergenic | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr8_4:29401403-29401422 | None:intergenic | 40.0% |
| TTTCTTACATATGAGACCGG+AGG | - | chr8_4:29401518-29401537 | Msa1322400:CDS | 40.0% | |
| TTCTTACATATGAGACCGGA+GGG | - | chr8_4:29401519-29401538 | Msa1322400:CDS | 40.0% | |
| !! | GTTTTAGGTAAGTGCAGCTT+GGG | - | chr8_4:29401556-29401575 | Msa1322400:intron | 40.0% |
| !! | TTTTAGGTAAGTGCAGCTTG+GGG | - | chr8_4:29401557-29401576 | Msa1322400:intron | 40.0% |
| TGGGGAACAGGTTTAATCAT+TGG | - | chr8_4:29401575-29401594 | Msa1322400:intron | 40.0% | |
| !! | GCTGATAGTGGCAAAAACTT+AGG | - | chr8_4:29401782-29401801 | Msa1322400:intron | 40.0% |
| ! | TCTTTCCAAAGGGTTCCTTT+TGG | - | chr8_4:29401878-29401897 | Msa1322400:intron | 40.0% |
| ! | CTTTCCAAAGGGTTCCTTTT+GGG | - | chr8_4:29401879-29401898 | Msa1322400:intron | 40.0% |
| TTATCCCAAAAGGAACCCTT+TGG | + | chr8_4:29401886-29401905 | None:intergenic | 40.0% | |
| GTCCACTTACTTATCCCAAA+AGG | + | chr8_4:29401896-29401915 | None:intergenic | 40.0% | |
| TTGCCCTGCTTCATAATATC+AGG | - | chr8_4:29402012-29402031 | Msa1322400:intron | 40.0% | |
| TAGTAGTTATTGCCTGCTTG+TGG | - | chr8_4:29402046-29402065 | Msa1322400:intron | 40.0% | |
| TGGATTCCGGTATGTATCAT+CGG | - | chr8_4:29402066-29402085 | Msa1322400:intron | 40.0% | |
| AGCTTCAGCATCATCTATGA+TGG | + | chr8_4:29402189-29402208 | None:intergenic | 40.0% | |
| TAAAGGGCCAATTCATCAAG+AGG | + | chr8_4:29402268-29402287 | None:intergenic | 40.0% | |
| GTTAGTCCTCTAAATTTGGG+GGG | - | chr8_4:29402445-29402464 | Msa1322400:intron | 40.0% | |
| TTCAATCCCCCCAAATTTAG+AGG | + | chr8_4:29402454-29402473 | None:intergenic | 40.0% | |
| GTGATTCGAGCAATGTTAAC+AGG | + | chr8_4:29402661-29402680 | None:intergenic | 40.0% | |
| GTTAACATTGCTCGAATCAC+AGG | - | chr8_4:29402661-29402680 | Msa1322400:intron | 40.0% | |
| TAACATTGCTCGAATCACAG+GGG | - | chr8_4:29402663-29402682 | Msa1322400:intron | 40.0% | |
| AAGGGGTAACTTTGCAACAA+TGG | + | chr8_4:29402789-29402808 | None:intergenic | 40.0% | |
| CTGACAACATTGCTATGAAG+GGG | + | chr8_4:29402806-29402825 | None:intergenic | 40.0% | |
| CCTGACAACATTGCTATGAA+GGG | + | chr8_4:29402807-29402826 | None:intergenic | 40.0% | |
| ACTTAGGTGACCATTACAAC+AGG | - | chr8_4:29402996-29403015 | Msa1322400:CDS | 40.0% | |
| TGAATACACTTACCACTGCT+CGG | + | chr8_4:29403040-29403059 | None:intergenic | 40.0% | |
| AAACAGGAACAACACCAAAG+AGG | - | chr8_4:29403182-29403201 | Msa1322400:CDS | 40.0% | |
| ! | AACTTGGTCACAAAAGCGTA+TGG | - | chr8_4:29403669-29403688 | Msa1322400:intron | 40.0% |
| GGTTTATGGTACGACATAAG+TGG | + | chr8_4:29403836-29403855 | None:intergenic | 40.0% | |
| GACCTCTTATTATACGCGTT+TGG | + | chr8_4:29403883-29403902 | None:intergenic | 40.0% | |
| CTGATTTCAGACAACTTTGC+AGG | - | chr8_4:29404069-29404088 | Msa1322400:intron | 40.0% | |
| CAGGAGTTATGTAGTATCAC+AGG | - | chr8_4:29404088-29404107 | Msa1322400:intron | 40.0% | |
| GCTATAGAGGGATAGTTGAA+AGG | - | chr8_4:29404211-29404230 | Msa1322400:intron | 40.0% | |
| GTTGAAAGGAAAGAGAATGC+TGG | - | chr8_4:29404225-29404244 | Msa1322400:intron | 40.0% | |
| TTGGAGTCATGATTCTCAAG+TGG | - | chr8_4:29404268-29404287 | Msa1322400:intron | 40.0% | |
| AAGTCCCTACAATTGTGCTT+GGG | + | chr8_4:29404491-29404510 | None:intergenic | 40.0% | |
| TAAGTCCCTACAATTGTGCT+TGG | + | chr8_4:29404492-29404511 | None:intergenic | 40.0% | |
| TAGGGACTTATCCTCTAATC+TGG | - | chr8_4:29404502-29404521 | Msa1322400:CDS | 40.0% | |
| AGGGACTTATCCTCTAATCT+GGG | - | chr8_4:29404503-29404522 | Msa1322400:CDS | 40.0% | |
| ACTTATCCTCTAATCTGGGT+AGG | - | chr8_4:29404507-29404526 | Msa1322400:CDS | 40.0% | |
| TATAGTCCTACCCAGATTAG+AGG | + | chr8_4:29404516-29404535 | None:intergenic | 40.0% | |
| CAAGGATTGTCCTGGTTGTA+AGG | - | chr8_4:29399187-29399206 | Msa1322400:three_prime_UTR | 45.0% | |
| ! | TGTTTTCGCTCGCAACGTAT+AGG | - | chr8_4:29399733-29399752 | Msa1322400:intron | 45.0% |
| ! | AGCTACTATGCTGGCTATGT+AGG | - | chr8_4:29400520-29400539 | Msa1322400:intron | 45.0% |
| GGAATGGTTTCTGATCGCTA+TGG | - | chr8_4:29400672-29400691 | Msa1322400:CDS | 45.0% | |
| CCATAAAACCATACTCCCTC+CGG | + | chr8_4:29401537-29401556 | None:intergenic | 45.0% | |
| !!! | GGTTTTAGGTAAGTGCAGCT+TGG | - | chr8_4:29401555-29401574 | Msa1322400:intron | 45.0% |
| ATGAAGCAGGGCAAGAAGTA+AGG | + | chr8_4:29402006-29402025 | None:intergenic | 45.0% | |
| TATTGCCTGCTTGTGGATTC+CGG | - | chr8_4:29402053-29402072 | Msa1322400:intron | 45.0% | |
| CCCTTCATAGCAATGTTGTC+AGG | - | chr8_4:29402804-29402823 | Msa1322400:CDS | 45.0% | |
| GCCTGACAACATTGCTATGA+AGG | + | chr8_4:29402808-29402827 | None:intergenic | 45.0% | |
| TTCCATTAGCTGCTCCTCTT+TGG | + | chr8_4:29403199-29403218 | None:intergenic | 45.0% | |
| AACTCACATTGTACCACCTG+CGG | + | chr8_4:29403264-29403283 | None:intergenic | 45.0% | |
| ! | TGCTTTTGAGCATCCTACCT+GGG | + | chr8_4:29403708-29403727 | None:intergenic | 45.0% |
| !! | TTGCTTTTGAGCATCCTACC+TGG | + | chr8_4:29403709-29403728 | None:intergenic | 45.0% |
| TTTAACTGCAGGCACCCATA+TGG | - | chr8_4:29403949-29403968 | Msa1322400:intron | 45.0% | |
| ATGTCCCCAAGCACAATTGT+AGG | - | chr8_4:29404483-29404502 | Msa1322400:CDS | 45.0% | |
| TGTCCCCAAGCACAATTGTA+GGG | - | chr8_4:29404484-29404503 | Msa1322400:CDS | 45.0% | |
| AGTCCCTACAATTGTGCTTG+GGG | + | chr8_4:29404490-29404509 | None:intergenic | 45.0% | |
| GCTTGGTCAACCTTACAACC+AGG | + | chr8_4:29399200-29399219 | None:intergenic | 50.0% | |
| GCATGTAGCGAGTCCAATCT+CGG | - | chr8_4:29399455-29399474 | Msa1322400:three_prime_UTR | 50.0% | |
| TGGCGCAATTGGACCAGTAA+AGG | - | chr8_4:29400939-29400958 | Msa1322400:intron | 50.0% | |
| CGAGAAGAACACCAAGCTCT+AGG | - | chr8_4:29401159-29401178 | Msa1322400:intron | 50.0% | |
| CTGTTGAGAGTCCTAGAGCT+TGG | + | chr8_4:29401173-29401192 | None:intergenic | 50.0% | |
| ! | GGGGACACGGTTTTCAACTT+CGG | + | chr8_4:29401325-29401344 | None:intergenic | 50.0% |
| ATATGAGACCGGAGGGAGTA+TGG | - | chr8_4:29401526-29401545 | Msa1322400:CDS | 50.0% | |
| !! | CCGGAGGGAGTATGGTTTTA+TGG | - | chr8_4:29401534-29401553 | Msa1322400:intron | 50.0% |
| ! | ATCATTGGACCAGCATTGGG+AGG | - | chr8_4:29401590-29401609 | Msa1322400:intron | 50.0% |
| ! | ACCAGCATTGGGAGGCTATT+TGG | - | chr8_4:29401598-29401617 | Msa1322400:intron | 50.0% |
| ! | ATTGGGAGGCTATTTGGCTC+AGG | - | chr8_4:29401604-29401623 | Msa1322400:intron | 50.0% |
| ! | GTCAGTGTGTGTGCTGATAG+TGG | - | chr8_4:29401770-29401789 | Msa1322400:intron | 50.0% |
| ACATACCGGAATCCACAAGC+AGG | + | chr8_4:29402061-29402080 | None:intergenic | 50.0% | |
| CCACTGCTCGGTTCTGTATA+AGG | + | chr8_4:29403028-29403047 | None:intergenic | 50.0% | |
| CCTTATACAGAACCGAGCAG+TGG | - | chr8_4:29403025-29403044 | Msa1322400:CDS | 50.0% | |
| CACCAAAGAGGAGCAGCTAA+TGG | - | chr8_4:29403194-29403213 | Msa1322400:CDS | 50.0% | |
| ATGGATGCTTCTTTCCTCCC+AGG | - | chr8_4:29403688-29403707 | Msa1322400:intron | 50.0% | |
| ATGCTTCTTTCCTCCCAGGT+AGG | - | chr8_4:29403692-29403711 | Msa1322400:intron | 50.0% | |
| ! | TTTTGAGCATCCTACCTGGG+AGG | + | chr8_4:29403705-29403724 | None:intergenic | 50.0% |
| GTAAGTGCAGCTTGGGGAAC+AGG | - | chr8_4:29401563-29401582 | Msa1322400:intron | 55.0% | |
| GCCAAATAGCCTCCCAATGC+TGG | + | chr8_4:29401602-29401621 | None:intergenic | 55.0% | |
| AAAGCTATTGGACCTGCCGC+AGG | - | chr8_4:29403245-29403264 | Msa1322400:intron | 55.0% | |
| CACATTGTACCACCTGCGGC+AGG | + | chr8_4:29403260-29403279 | None:intergenic | 60.0% | |
| GCTATTGGACCTGCCGCAGG+TGG | - | chr8_4:29403248-29403267 | Msa1322400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 29399137 | 29404560 | 29399137 | ID=Msa1322400;Name=Msa1322400 |
| chr8_4 | mRNA | 29399137 | 29404560 | 29399137 | ID=Msa1322400-mRNA-1;Parent=Msa1322400;Name=Msa1322400-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.93|0.93|1|0.93|0.93|16|488|450 |
| chr8_4 | exon | 29399137 | 29399737 | 29399137 | ID=Msa1322400-mRNA-1:exon:9843;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29399988 | 29400031 | 29399988 | ID=Msa1322400-mRNA-1:exon:9842;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29400421 | 29400509 | 29400421 | ID=Msa1322400-mRNA-1:exon:9841;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29400651 | 29400695 | 29400651 | ID=Msa1322400-mRNA-1:exon:9840;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29400816 | 29400923 | 29400816 | ID=Msa1322400-mRNA-1:exon:9839;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29401013 | 29401098 | 29401013 | ID=Msa1322400-mRNA-1:exon:9838;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29401183 | 29401270 | 29401183 | ID=Msa1322400-mRNA-1:exon:9837;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29401354 | 29401545 | 29401354 | ID=Msa1322400-mRNA-1:exon:9836;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29401623 | 29401698 | 29401623 | ID=Msa1322400-mRNA-1:exon:9835;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29401792 | 29401841 | 29401792 | ID=Msa1322400-mRNA-1:exon:9834;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29402506 | 29402559 | 29402506 | ID=Msa1322400-mRNA-1:exon:9833;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29402737 | 29402839 | 29402737 | ID=Msa1322400-mRNA-1:exon:9832;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29402967 | 29403069 | 29402967 | ID=Msa1322400-mRNA-1:exon:9831;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29403156 | 29403216 | 29403156 | ID=Msa1322400-mRNA-1:exon:9830;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29403519 | 29403559 | 29403519 | ID=Msa1322400-mRNA-1:exon:9829;Parent=Msa1322400-mRNA-1 |
| chr8_4 | exon | 29404461 | 29404560 | 29404461 | ID=Msa1322400-mRNA-1:exon:9828;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29404461 | 29404560 | 29404461 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29403519 | 29403559 | 29403519 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29403156 | 29403216 | 29403156 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29402967 | 29403069 | 29402967 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29402737 | 29402839 | 29402737 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29402506 | 29402559 | 29402506 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29401792 | 29401841 | 29401792 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29401623 | 29401698 | 29401623 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29401354 | 29401545 | 29401354 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29401183 | 29401270 | 29401183 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29401013 | 29401098 | 29401013 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29400816 | 29400923 | 29400816 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29400651 | 29400695 | 29400651 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29400421 | 29400509 | 29400421 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29399988 | 29400031 | 29399988 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | CDS | 29399625 | 29399737 | 29399625 | ID=Msa1322400-mRNA-1:cds;Parent=Msa1322400-mRNA-1 |
| chr8_4 | three_prime_UTR | 29399137 | 29399624 | 29399137 | ID=Msa1322400-mRNA-1:three_prime_utr;Parent=Msa1322400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
