Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322990 | XP_013445244.1 | 92.105 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 1.26e-99 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322990 | sp|Q9SSK5|MLP43_ARATH | 34.000 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 3.13e-26 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322990 | A0A072U0G0 | 92.105 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 6.03e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1250660 | Msa1322990 | 0.802087 | 6.625771e-49 | -8.615850e-47 |
| Msa1283980 | Msa1322990 | 0.807203 | 5.667823e-50 | -8.615850e-47 |
| Msa1284020 | Msa1322990 | 0.823990 | 1.028262e-53 | -8.615850e-47 |
| Msa1322980 | Msa1322990 | 0.818395 | 2.004505e-52 | -8.615850e-47 |
| Msa1322990 | Msa1323080 | 0.881688 | 1.949344e-70 | -8.615850e-47 |
| Msa1030320 | Msa1322990 | 0.807018 | 6.204255e-50 | -8.615850e-47 |
| Msa0880910 | Msa1322990 | 0.808929 | 2.432407e-50 | -8.615850e-47 |
| Msa0946310 | Msa1322990 | 0.865509 | 5.609048e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322990 | MtrunA17_Chr8g0355761 | 92.105 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 1.16e-103 | 293 |
| Msa1322990 | MtrunA17_Chr8g0355741 | 72.848 | 151 | 41 | 0 | 1 | 151 | 1 | 151 | 7.59e-85 | 245 |
| Msa1322990 | MtrunA17_Chr8g0355781 | 71.053 | 152 | 44 | 0 | 1 | 152 | 1 | 152 | 6.70e-82 | 238 |
| Msa1322990 | MtrunA17_Chr8g0355721 | 71.711 | 152 | 43 | 0 | 1 | 152 | 1 | 152 | 1.78e-81 | 237 |
| Msa1322990 | MtrunA17_Chr8g0355661 | 69.737 | 152 | 45 | 1 | 1 | 152 | 1 | 151 | 2.47e-78 | 229 |
| Msa1322990 | MtrunA17_Chr8g0355811 | 67.763 | 152 | 48 | 1 | 1 | 152 | 1 | 151 | 5.26e-77 | 226 |
| Msa1322990 | MtrunA17_Chr8g0355641 | 65.563 | 151 | 52 | 0 | 1 | 151 | 1 | 151 | 1.32e-76 | 224 |
| Msa1322990 | MtrunA17_Chr8g0355821 | 65.132 | 152 | 52 | 1 | 1 | 152 | 1 | 151 | 1.06e-73 | 217 |
| Msa1322990 | MtrunA17_Chr8g0355801 | 65.132 | 152 | 52 | 1 | 1 | 152 | 1 | 151 | 3.09e-73 | 216 |
| Msa1322990 | MtrunA17_Chr8g0355791 | 65.132 | 152 | 52 | 1 | 1 | 152 | 1 | 151 | 1.69e-72 | 214 |
| Msa1322990 | MtrunA17_Chr8g0355771 | 63.816 | 152 | 54 | 1 | 1 | 152 | 1 | 151 | 1.90e-70 | 209 |
| Msa1322990 | MtrunA17_Chr1g0160371 | 43.137 | 153 | 84 | 2 | 1 | 151 | 1 | 152 | 2.09e-41 | 135 |
| Msa1322990 | MtrunA17_Chr1g0160381 | 37.255 | 153 | 93 | 2 | 1 | 151 | 5 | 156 | 1.09e-37 | 126 |
| Msa1322990 | MtrunA17_Chr1g0160391 | 39.103 | 156 | 87 | 4 | 1 | 149 | 1 | 155 | 1.02e-32 | 114 |
| Msa1322990 | MtrunA17_Chr1g0160801 | 35.811 | 148 | 86 | 4 | 7 | 152 | 7 | 147 | 8.04e-28 | 100 |
| Msa1322990 | MtrunA17_Chr8g0339261 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 2.74e-26 | 97.1 |
| Msa1322990 | MtrunA17_Chr1g0160351 | 41.935 | 93 | 52 | 1 | 61 | 151 | 1 | 93 | 6.34e-25 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322990 | AT1G70890.1 | 34.000 | 150 | 96 | 3 | 3 | 150 | 7 | 155 | 3.18e-27 | 100 |
| Msa1322990 | AT5G28010.1 | 34.000 | 150 | 96 | 3 | 3 | 150 | 15 | 163 | 1.24e-26 | 98.6 |
| Msa1322990 | AT5G28010.2 | 34.000 | 150 | 96 | 3 | 3 | 150 | 15 | 163 | 1.24e-26 | 98.6 |
| Msa1322990 | AT1G70840.1 | 32.667 | 150 | 98 | 3 | 3 | 150 | 20 | 168 | 1.51e-26 | 98.6 |
| Msa1322990 | AT1G70830.5 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 2.08e-26 | 98.2 |
| Msa1322990 | AT1G70830.3 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 3.58e-26 | 98.6 |
| Msa1322990 | AT1G70830.2 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 1.33e-25 | 98.2 |
| Msa1322990 | AT1G70830.1 | 34.667 | 150 | 95 | 3 | 3 | 150 | 22 | 170 | 4.34e-25 | 98.6 |
| Msa1322990 | AT1G70830.1 | 33.333 | 150 | 97 | 3 | 3 | 150 | 184 | 332 | 2.17e-23 | 94.0 |
| Msa1322990 | AT1G70850.2 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 4.54e-24 | 94.0 |
| Msa1322990 | AT1G70830.4 | 33.333 | 150 | 97 | 3 | 3 | 150 | 137 | 285 | 8.61e-24 | 94.4 |
| Msa1322990 | AT1G70830.4 | 32.258 | 93 | 62 | 1 | 59 | 150 | 31 | 123 | 5.39e-14 | 67.8 |
| Msa1322990 | AT1G70850.3 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 1.48e-23 | 94.0 |
| Msa1322990 | AT1G70850.3 | 33.571 | 140 | 90 | 3 | 13 | 150 | 175 | 313 | 4.58e-23 | 92.8 |
| Msa1322990 | AT1G70850.1 | 32.667 | 150 | 98 | 3 | 3 | 150 | 9 | 157 | 1.48e-23 | 94.0 |
| Msa1322990 | AT1G70850.1 | 33.571 | 140 | 90 | 3 | 13 | 150 | 175 | 313 | 4.58e-23 | 92.8 |
| Msa1322990 | AT1G23130.1 | 30.201 | 149 | 102 | 2 | 3 | 150 | 10 | 157 | 4.07e-23 | 89.4 |
| Msa1322990 | AT1G70870.1 | 35.099 | 151 | 85 | 4 | 1 | 151 | 1 | 138 | 1.41e-22 | 87.4 |
| Msa1322990 | AT5G28000.1 | 28.000 | 150 | 105 | 3 | 3 | 150 | 13 | 161 | 1.59e-20 | 82.8 |
| Msa1322990 | AT1G23120.1 | 27.083 | 144 | 100 | 3 | 7 | 150 | 7 | 145 | 2.98e-20 | 81.6 |
| Msa1322990 | AT1G70880.1 | 28.000 | 150 | 105 | 3 | 3 | 150 | 8 | 156 | 3.68e-20 | 81.6 |
| Msa1322990 | AT1G23120.2 | 27.083 | 144 | 100 | 3 | 7 | 150 | 57 | 195 | 1.16e-19 | 81.6 |
| Msa1322990 | AT1G14930.1 | 30.968 | 155 | 100 | 4 | 1 | 152 | 1 | 151 | 2.85e-19 | 79.3 |
| Msa1322990 | AT4G23670.1 | 30.968 | 155 | 100 | 4 | 1 | 152 | 1 | 151 | 7.26e-17 | 73.2 |
| Msa1322990 | AT2G01520.1 | 30.323 | 155 | 101 | 4 | 1 | 152 | 1 | 151 | 7.91e-17 | 72.8 |
| Msa1322990 | AT1G24020.1 | 30.065 | 153 | 103 | 3 | 1 | 151 | 1 | 151 | 1.17e-15 | 70.1 |
| Msa1322990 | AT1G24020.2 | 30.065 | 153 | 103 | 3 | 1 | 151 | 1 | 151 | 1.17e-15 | 70.1 |
| Msa1322990 | AT4G14060.1 | 30.323 | 155 | 101 | 4 | 1 | 152 | 1 | 151 | 3.80e-15 | 68.6 |
| Msa1322990 | AT1G35260.1 | 22.517 | 151 | 113 | 3 | 2 | 150 | 1 | 149 | 4.65e-15 | 68.6 |
| Msa1322990 | AT1G14940.1 | 28.477 | 151 | 105 | 3 | 1 | 150 | 1 | 149 | 7.11e-15 | 67.8 |
| Msa1322990 | AT4G23680.1 | 29.032 | 155 | 103 | 4 | 1 | 152 | 1 | 151 | 1.53e-14 | 67.0 |
| Msa1322990 | AT2G01530.1 | 29.032 | 155 | 103 | 4 | 1 | 152 | 1 | 151 | 1.73e-14 | 67.0 |
| Msa1322990 | AT1G14950.1 | 28.758 | 153 | 104 | 4 | 1 | 151 | 1 | 150 | 1.85e-13 | 64.3 |
| Msa1322990 | AT1G30990.1 | 25.828 | 151 | 108 | 4 | 1 | 150 | 1 | 148 | 1.21e-11 | 59.3 |
| Msa1322990 | AT1G14960.1 | 26.316 | 152 | 109 | 3 | 1 | 151 | 1 | 150 | 8.71e-11 | 57.0 |
| Msa1322990 | AT3G26450.1 | 26.282 | 156 | 107 | 5 | 1 | 152 | 1 | 152 | 9.01e-11 | 57.0 |
Find 29 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTCTTCGGTGGAGATAT+TGG | 0.245046 | 8_4:-30554729 | Msa1322990:CDS |
| AGCTCTTCGGTGGAGATATT+GGG | 0.329670 | 8_4:-30554728 | Msa1322990:CDS |
| ATATTCAATTGTCCATTTGA+TGG | 0.352752 | 8_4:+30554644 | None:intergenic |
| GTCATCCCCTTGATGTAGCT+TGG | 0.401893 | 8_4:+30556240 | None:intergenic |
| AAACATTGGACTTATGTCAT+AGG | 0.403651 | 8_4:-30556196 | Msa1322990:intron |
| TAGAGATATTGATGCTCATC+TGG | 0.421031 | 8_4:-30554559 | Msa1322990:CDS |
| ATTCAAATAATTGATAATAG+TGG | 0.432059 | 8_4:-30554678 | Msa1322990:CDS |
| ACGTAGTCCATCCAGCCATT+AGG | 0.444330 | 8_4:+30554594 | None:intergenic |
| AGATATTGGGGAGAACTATA+AGG | 0.448937 | 8_4:-30554715 | Msa1322990:CDS |
| AGCTACATCAAGGGGATGAC+TGG | 0.453220 | 8_4:-30556237 | Msa1322990:CDS |
| GAGGATATTGACCCTCCTAA+TGG | 0.460289 | 8_4:-30554609 | Msa1322990:CDS |
| GCAGCAGTGCTGCCATCAAA+TGG | 0.475803 | 8_4:-30554656 | Msa1322990:CDS |
| GGTAAACTTAGTACTGAACT+TGG | 0.476618 | 8_4:-30556349 | Msa1322990:CDS |
| CTTCCAAGGATGGTGCTCAA+TGG | 0.508173 | 8_4:-30556370 | None:intergenic |
| AAACTCACTTACAAGCTCTT+CGG | 0.512951 | 8_4:-30554741 | Msa1322990:CDS |
| CATGAAACCAAGCTACATCA+AGG | 0.525025 | 8_4:-30556247 | Msa1322990:CDS |
| ATATTGACCCTCCTAATGGC+TGG | 0.525673 | 8_4:-30554605 | Msa1322990:CDS |
| TTTCATGAACTCTTTCACAA+TGG | 0.533960 | 8_4:+30556263 | None:intergenic |
| TAGTCCATCCAGCCATTAGG+AGG | 0.553714 | 8_4:+30554597 | None:intergenic |
| TGACCCTCCTAATGGCTGGA+TGG | 0.577019 | 8_4:-30554601 | Msa1322990:CDS |
| TGACTGGCATCACACTGATA+CGG | 0.601188 | 8_4:-30556221 | Msa1322990:CDS |
| GTAAACTTAGTACTGAACTT+GGG | 0.605653 | 8_4:-30556348 | Msa1322990:CDS |
| ACACTGATACGGTTAAACAT+TGG | 0.605669 | 8_4:-30556210 | Msa1322990:CDS |
| GCTCTTCGGTGGAGATATTG+GGG | 0.615379 | 8_4:-30554727 | Msa1322990:CDS |
| CTCACTTACAAGCTCTTCGG+TGG | 0.619750 | 8_4:-30554738 | Msa1322990:CDS |
| ATGAAACCAAGCTACATCAA+GGG | 0.623559 | 8_4:-30556246 | Msa1322990:CDS |
| TGAAACCAAGCTACATCAAG+GGG | 0.635241 | 8_4:-30556245 | Msa1322990:CDS |
| AGTCCATCCAGCCATTAGGA+GGG | 0.659406 | 8_4:+30554598 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.677949 | 8_4:-30554628 | Msa1322990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTCTAATTTTATCATTTT+GGG | + | chr8_4:30554994-30555013 | None:intergenic | 15.0% |
| !! | ACGTAAATTGTTAAAATAAA+AGG | + | chr8_4:30555068-30555087 | None:intergenic | 15.0% |
| !!! | TAAAATTACTTTAAAACAAC+TGG | - | chr8_4:30555899-30555918 | Msa1322990:intron | 15.0% |
| !! | AATTTAAGAACAATATTTGT+AGG | + | chr8_4:30555985-30556004 | None:intergenic | 15.0% |
| !!! | ATTCAAATAATTGATAATAG+TGG | - | chr8_4:30556231-30556250 | Msa1322990:CDS | 15.0% |
| !!! | CTTTCTAATTTTATCATTTT+GGG | + | chr8_4:30554994-30555013 | None:intergenic | 15.0% |
| !! | ACGTAAATTGTTAAAATAAA+AGG | + | chr8_4:30555068-30555087 | None:intergenic | 15.0% |
| !!! | TAAAATTACTTTAAAACAAC+TGG | - | chr8_4:30555899-30555918 | Msa1322990:intron | 15.0% |
| !! | AATTTAAGAACAATATTTGT+AGG | + | chr8_4:30555985-30556004 | None:intergenic | 15.0% |
| !!! | ATTCAAATAATTGATAATAG+TGG | - | chr8_4:30556231-30556250 | Msa1322990:CDS | 15.0% |
| !! | TATTCTAATTAAGGTCTTTA+AGG | - | chr8_4:30554940-30554959 | Msa1322990:intron | 20.0% |
| !!! | TAATTTTATCATTTTGGGAT+AGG | + | chr8_4:30554989-30555008 | None:intergenic | 20.0% |
| !!! | GCTTTCTAATTTTATCATTT+TGG | + | chr8_4:30554995-30555014 | None:intergenic | 20.0% |
| !! | ATTATTGAAAACGAAAGATA+AGG | + | chr8_4:30556033-30556052 | None:intergenic | 20.0% |
| !! | CATATGAAAATAAAATTGTG+TGG | + | chr8_4:30556065-30556084 | None:intergenic | 20.0% |
| !!! | CACACAATTTTATTTTCATA+TGG | - | chr8_4:30556063-30556082 | Msa1322990:intron | 20.0% |
| !! | TATTCTAATTAAGGTCTTTA+AGG | - | chr8_4:30554940-30554959 | Msa1322990:intron | 20.0% |
| !!! | TAATTTTATCATTTTGGGAT+AGG | + | chr8_4:30554989-30555008 | None:intergenic | 20.0% |
| !!! | GCTTTCTAATTTTATCATTT+TGG | + | chr8_4:30554995-30555014 | None:intergenic | 20.0% |
| !! | ATTATTGAAAACGAAAGATA+AGG | + | chr8_4:30556033-30556052 | None:intergenic | 20.0% |
| !! | CATATGAAAATAAAATTGTG+TGG | + | chr8_4:30556065-30556084 | None:intergenic | 20.0% |
| !!! | CACACAATTTTATTTTCATA+TGG | - | chr8_4:30556063-30556082 | Msa1322990:intron | 20.0% |
| !! | TACATGTACTATTTTATCGT+TGG | + | chr8_4:30555547-30555566 | None:intergenic | 25.0% |
| ! | CTTAAACTAGAAATCTGAAA+AGG | - | chr8_4:30555942-30555961 | Msa1322990:intron | 25.0% |
| ! | ATATTCAATTGTCCATTTGA+TGG | + | chr8_4:30556268-30556287 | None:intergenic | 25.0% |
| !! | TACATGTACTATTTTATCGT+TGG | + | chr8_4:30555547-30555566 | None:intergenic | 25.0% |
| ! | CTTAAACTAGAAATCTGAAA+AGG | - | chr8_4:30555942-30555961 | Msa1322990:intron | 25.0% |
| ! | ATATTCAATTGTCCATTTGA+TGG | + | chr8_4:30556268-30556287 | None:intergenic | 25.0% |
| ! | GTAAACTTAGTACTGAACTT+GGG | - | chr8_4:30554561-30554580 | Msa1322990:CDS | 30.0% |
| TTTCATGAACTCTTTCACAA+TGG | + | chr8_4:30554649-30554668 | None:intergenic | 30.0% | |
| AAACATTGGACTTATGTCAT+AGG | - | chr8_4:30554713-30554732 | Msa1322990:CDS | 30.0% | |
| ! | TTGATAGTAAGTAAACGTAG+AGG | + | chr8_4:30555039-30555058 | None:intergenic | 30.0% |
| !! | AGTGTTAACTTGTGTCTTTA+GGG | - | chr8_4:30555101-30555120 | Msa1322990:intron | 30.0% |
| ACAAGTTAACATTTCCCTTA+GGG | - | chr8_4:30555263-30555282 | Msa1322990:intron | 30.0% | |
| !!! | AGTCATGAGAATGACTTTTT+TGG | - | chr8_4:30555301-30555320 | Msa1322990:intron | 30.0% |
| ! | GATGAATTGATGATACTATG+AGG | + | chr8_4:30555402-30555421 | None:intergenic | 30.0% |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr8_4:30555482-30555501 | None:intergenic | 30.0% | |
| AAACTTAGAGATCCAACTAA+GGG | + | chr8_4:30555716-30555735 | None:intergenic | 30.0% | |
| TAAACTTAGAGATCCAACTA+AGG | + | chr8_4:30555717-30555736 | None:intergenic | 30.0% | |
| !!! | GATTCTAGTGTGTTTTTTGA+AGG | - | chr8_4:30555833-30555852 | Msa1322990:intron | 30.0% |
| GTGAATAAGATTTGCAGAAT+CGG | - | chr8_4:30555862-30555881 | Msa1322990:intron | 30.0% | |
| AAAACAACTGGTACAAAACT+TGG | - | chr8_4:30555911-30555930 | Msa1322990:intron | 30.0% | |
| TGAATATGAGAAGATCAATG+AGG | - | chr8_4:30556281-30556300 | Msa1322990:CDS | 30.0% | |
| ! | GTAAACTTAGTACTGAACTT+GGG | - | chr8_4:30554561-30554580 | Msa1322990:CDS | 30.0% |
| TTTCATGAACTCTTTCACAA+TGG | + | chr8_4:30554649-30554668 | None:intergenic | 30.0% | |
| AAACATTGGACTTATGTCAT+AGG | - | chr8_4:30554713-30554732 | Msa1322990:CDS | 30.0% | |
| ! | TTGATAGTAAGTAAACGTAG+AGG | + | chr8_4:30555039-30555058 | None:intergenic | 30.0% |
| !! | AGTGTTAACTTGTGTCTTTA+GGG | - | chr8_4:30555101-30555120 | Msa1322990:intron | 30.0% |
| ACAAGTTAACATTTCCCTTA+GGG | - | chr8_4:30555263-30555282 | Msa1322990:intron | 30.0% | |
| !!! | AGTCATGAGAATGACTTTTT+TGG | - | chr8_4:30555301-30555320 | Msa1322990:intron | 30.0% |
| ! | GATGAATTGATGATACTATG+AGG | + | chr8_4:30555402-30555421 | None:intergenic | 30.0% |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr8_4:30555482-30555501 | None:intergenic | 30.0% | |
| AAACTTAGAGATCCAACTAA+GGG | + | chr8_4:30555716-30555735 | None:intergenic | 30.0% | |
| TAAACTTAGAGATCCAACTA+AGG | + | chr8_4:30555717-30555736 | None:intergenic | 30.0% | |
| !!! | GATTCTAGTGTGTTTTTTGA+AGG | - | chr8_4:30555833-30555852 | Msa1322990:intron | 30.0% |
| GTGAATAAGATTTGCAGAAT+CGG | - | chr8_4:30555862-30555881 | Msa1322990:intron | 30.0% | |
| AAAACAACTGGTACAAAACT+TGG | - | chr8_4:30555911-30555930 | Msa1322990:intron | 30.0% | |
| TGAATATGAGAAGATCAATG+AGG | - | chr8_4:30556281-30556300 | Msa1322990:CDS | 30.0% | |
| ! | GGTAAACTTAGTACTGAACT+TGG | - | chr8_4:30554560-30554579 | Msa1322990:CDS | 35.0% |
| ATGAAACCAAGCTACATCAA+GGG | - | chr8_4:30554663-30554682 | Msa1322990:CDS | 35.0% | |
| ACACTGATACGGTTAAACAT+TGG | - | chr8_4:30554699-30554718 | Msa1322990:CDS | 35.0% | |
| ! | GCTTTTACATGTTCTCTTGT+TGG | - | chr8_4:30555013-30555032 | Msa1322990:intron | 35.0% |
| !! | CAGTGTTAACTTGTGTCTTT+AGG | - | chr8_4:30555100-30555119 | Msa1322990:intron | 35.0% |
| AATCATTACCTTGTGTCTTG+AGG | - | chr8_4:30555238-30555257 | Msa1322990:intron | 35.0% | |
| ATCATTACCTTGTGTCTTGA+GGG | - | chr8_4:30555239-30555258 | Msa1322990:intron | 35.0% | |
| GACAAGTTAACATTTCCCTT+AGG | - | chr8_4:30555262-30555281 | Msa1322990:intron | 35.0% | |
| TTCCCTTAGGGAAAATTCTA+TGG | - | chr8_4:30555275-30555294 | Msa1322990:intron | 35.0% | |
| ! | CACCATAGAATTTTCCCTAA+GGG | + | chr8_4:30555280-30555299 | None:intergenic | 35.0% |
| ! | TCACCATAGAATTTTCCCTA+AGG | + | chr8_4:30555281-30555300 | None:intergenic | 35.0% |
| ATGCCATTGTACAAATAGTG+GGG | + | chr8_4:30555367-30555386 | None:intergenic | 35.0% | |
| GATGCCATTGTACAAATAGT+GGG | + | chr8_4:30555368-30555387 | None:intergenic | 35.0% | |
| TGATGCCATTGTACAAATAG+TGG | + | chr8_4:30555369-30555388 | None:intergenic | 35.0% | |
| GTACAATGGCATCAAAAGTT+TGG | - | chr8_4:30555375-30555394 | Msa1322990:intron | 35.0% | |
| TGTTACGCTTATAACAAGGT+TGG | + | chr8_4:30555458-30555477 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr8_4:30555481-30555500 | None:intergenic | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr8_4:30555483-30555502 | None:intergenic | 35.0% | |
| AGTAATGCTTTGCAACATCT+TGG | + | chr8_4:30555573-30555592 | None:intergenic | 35.0% | |
| !!! | GTGTGTTTTTTGAAGGACTA+AGG | - | chr8_4:30555840-30555859 | Msa1322990:intron | 35.0% |
| AAACTCACTTACAAGCTCTT+CGG | - | chr8_4:30556168-30556187 | Msa1322990:intron | 35.0% | |
| AGATATTGGGGAGAACTATA+AGG | - | chr8_4:30556194-30556213 | Msa1322990:intron | 35.0% | |
| TAGAGATATTGATGCTCATC+TGG | - | chr8_4:30556350-30556369 | Msa1322990:CDS | 35.0% | |
| ! | GGTAAACTTAGTACTGAACT+TGG | - | chr8_4:30554560-30554579 | Msa1322990:CDS | 35.0% |
| ATGAAACCAAGCTACATCAA+GGG | - | chr8_4:30554663-30554682 | Msa1322990:CDS | 35.0% | |
| ACACTGATACGGTTAAACAT+TGG | - | chr8_4:30554699-30554718 | Msa1322990:CDS | 35.0% | |
| ! | GCTTTTACATGTTCTCTTGT+TGG | - | chr8_4:30555013-30555032 | Msa1322990:intron | 35.0% |
| !! | CAGTGTTAACTTGTGTCTTT+AGG | - | chr8_4:30555100-30555119 | Msa1322990:intron | 35.0% |
| AATCATTACCTTGTGTCTTG+AGG | - | chr8_4:30555238-30555257 | Msa1322990:intron | 35.0% | |
| ATCATTACCTTGTGTCTTGA+GGG | - | chr8_4:30555239-30555258 | Msa1322990:intron | 35.0% | |
| GACAAGTTAACATTTCCCTT+AGG | - | chr8_4:30555262-30555281 | Msa1322990:intron | 35.0% | |
| TTCCCTTAGGGAAAATTCTA+TGG | - | chr8_4:30555275-30555294 | Msa1322990:intron | 35.0% | |
| ! | CACCATAGAATTTTCCCTAA+GGG | + | chr8_4:30555280-30555299 | None:intergenic | 35.0% |
| ! | TCACCATAGAATTTTCCCTA+AGG | + | chr8_4:30555281-30555300 | None:intergenic | 35.0% |
| ATGCCATTGTACAAATAGTG+GGG | + | chr8_4:30555367-30555386 | None:intergenic | 35.0% | |
| GATGCCATTGTACAAATAGT+GGG | + | chr8_4:30555368-30555387 | None:intergenic | 35.0% | |
| TGATGCCATTGTACAAATAG+TGG | + | chr8_4:30555369-30555388 | None:intergenic | 35.0% | |
| GTACAATGGCATCAAAAGTT+TGG | - | chr8_4:30555375-30555394 | Msa1322990:intron | 35.0% | |
| TGTTACGCTTATAACAAGGT+TGG | + | chr8_4:30555458-30555477 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr8_4:30555481-30555500 | None:intergenic | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr8_4:30555483-30555502 | None:intergenic | 35.0% | |
| AGTAATGCTTTGCAACATCT+TGG | + | chr8_4:30555573-30555592 | None:intergenic | 35.0% | |
| !!! | GTGTGTTTTTTGAAGGACTA+AGG | - | chr8_4:30555840-30555859 | Msa1322990:intron | 35.0% |
| AAACTCACTTACAAGCTCTT+CGG | - | chr8_4:30556168-30556187 | Msa1322990:intron | 35.0% | |
| AGATATTGGGGAGAACTATA+AGG | - | chr8_4:30556194-30556213 | Msa1322990:intron | 35.0% | |
| TAGAGATATTGATGCTCATC+TGG | - | chr8_4:30556350-30556369 | Msa1322990:CDS | 35.0% | |
| CATGAAACCAAGCTACATCA+AGG | - | chr8_4:30554662-30554681 | Msa1322990:CDS | 40.0% | |
| TGAAACCAAGCTACATCAAG+GGG | - | chr8_4:30554664-30554683 | Msa1322990:CDS | 40.0% | |
| !! | GTCTTTAAGGAGTACTCAAG+AGG | - | chr8_4:30554953-30554972 | Msa1322990:intron | 40.0% |
| TCATTACCTTGTGTCTTGAG+GGG | - | chr8_4:30555240-30555259 | Msa1322990:intron | 40.0% | |
| ACACCCCACTATTTGTACAA+TGG | - | chr8_4:30555361-30555380 | Msa1322990:intron | 40.0% | |
| TAGAGATCCAACTAAGGGAA+GGG | + | chr8_4:30555711-30555730 | None:intergenic | 40.0% | |
| TTAGAGATCCAACTAAGGGA+AGG | + | chr8_4:30555712-30555731 | None:intergenic | 40.0% | |
| CATGAAACCAAGCTACATCA+AGG | - | chr8_4:30554662-30554681 | Msa1322990:CDS | 40.0% | |
| TGAAACCAAGCTACATCAAG+GGG | - | chr8_4:30554664-30554683 | Msa1322990:CDS | 40.0% | |
| !! | GTCTTTAAGGAGTACTCAAG+AGG | - | chr8_4:30554953-30554972 | Msa1322990:intron | 40.0% |
| TCATTACCTTGTGTCTTGAG+GGG | - | chr8_4:30555240-30555259 | Msa1322990:intron | 40.0% | |
| ACACCCCACTATTTGTACAA+TGG | - | chr8_4:30555361-30555380 | Msa1322990:intron | 40.0% | |
| TAGAGATCCAACTAAGGGAA+GGG | + | chr8_4:30555711-30555730 | None:intergenic | 40.0% | |
| TTAGAGATCCAACTAAGGGA+AGG | + | chr8_4:30555712-30555731 | None:intergenic | 40.0% | |
| TGACTGGCATCACACTGATA+CGG | - | chr8_4:30554688-30554707 | Msa1322990:CDS | 45.0% | |
| ! | GGGGTGTTACGCTTATAACA+AGG | + | chr8_4:30555462-30555481 | None:intergenic | 45.0% |
| ! | CTACTAGTTTCTCCTCCTGA+AGG | - | chr8_4:30555738-30555757 | Msa1322990:intron | 45.0% |
| TGCCATCTGTTGTCATGTGA+CGG | + | chr8_4:30556098-30556117 | None:intergenic | 45.0% | |
| AAGCTCTTCGGTGGAGATAT+TGG | - | chr8_4:30556180-30556199 | Msa1322990:intron | 45.0% | |
| AGCTCTTCGGTGGAGATATT+GGG | - | chr8_4:30556181-30556200 | Msa1322990:intron | 45.0% | |
| GAGGATATTGACCCTCCTAA+TGG | - | chr8_4:30556300-30556319 | Msa1322990:CDS | 45.0% | |
| ATATTGACCCTCCTAATGGC+TGG | - | chr8_4:30556304-30556323 | Msa1322990:CDS | 45.0% | |
| TGACTGGCATCACACTGATA+CGG | - | chr8_4:30554688-30554707 | Msa1322990:CDS | 45.0% | |
| ! | GGGGTGTTACGCTTATAACA+AGG | + | chr8_4:30555462-30555481 | None:intergenic | 45.0% |
| ! | CTACTAGTTTCTCCTCCTGA+AGG | - | chr8_4:30555738-30555757 | Msa1322990:intron | 45.0% |
| TGCCATCTGTTGTCATGTGA+CGG | + | chr8_4:30556098-30556117 | None:intergenic | 45.0% | |
| AAGCTCTTCGGTGGAGATAT+TGG | - | chr8_4:30556180-30556199 | Msa1322990:intron | 45.0% | |
| AGCTCTTCGGTGGAGATATT+GGG | - | chr8_4:30556181-30556200 | Msa1322990:intron | 45.0% | |
| GAGGATATTGACCCTCCTAA+TGG | - | chr8_4:30556300-30556319 | Msa1322990:CDS | 45.0% | |
| ATATTGACCCTCCTAATGGC+TGG | - | chr8_4:30556304-30556323 | Msa1322990:CDS | 45.0% | |
| !!! | AATTGAATTTAAAAATTTTT+AGG | + | chr8_4:30554817-30554836 | None:intergenic | 5.0% |
| !! | TATAAAAAATATTCTAATTA+AGG | - | chr8_4:30554931-30554950 | Msa1322990:intron | 5.0% |
| !!! | AATTGAATTTAAAAATTTTT+AGG | + | chr8_4:30554817-30554836 | None:intergenic | 5.0% |
| !! | TATAAAAAATATTCTAATTA+AGG | - | chr8_4:30554931-30554950 | Msa1322990:intron | 5.0% |
| GTCATCCCCTTGATGTAGCT+TGG | + | chr8_4:30554672-30554691 | None:intergenic | 50.0% | |
| AGCTACATCAAGGGGATGAC+TGG | - | chr8_4:30554672-30554691 | Msa1322990:CDS | 50.0% | |
| ACTTGTCCCCTCAAGACACA+AGG | + | chr8_4:30555249-30555268 | None:intergenic | 50.0% | |
| AGAAGCTCCCTTCCCTTAGT+TGG | - | chr8_4:30555701-30555720 | Msa1322990:intron | 50.0% | |
| TTTCTCCTCCTGAAGGTCTC+AGG | - | chr8_4:30555745-30555764 | Msa1322990:intron | 50.0% | |
| GAATCGAACCTGAGACCTTC+AGG | + | chr8_4:30555756-30555775 | None:intergenic | 50.0% | |
| TCCCGTCACATGACAACAGA+TGG | - | chr8_4:30556093-30556112 | Msa1322990:intron | 50.0% | |
| GCCATCTGTTGTCATGTGAC+GGG | + | chr8_4:30556097-30556116 | None:intergenic | 50.0% | |
| CTCACTTACAAGCTCTTCGG+TGG | - | chr8_4:30556171-30556190 | Msa1322990:intron | 50.0% | |
| GCTCTTCGGTGGAGATATTG+GGG | - | chr8_4:30556182-30556201 | Msa1322990:intron | 50.0% | |
| AGTCCATCCAGCCATTAGGA+GGG | + | chr8_4:30556314-30556333 | None:intergenic | 50.0% | |
| TAGTCCATCCAGCCATTAGG+AGG | + | chr8_4:30556315-30556334 | None:intergenic | 50.0% | |
| ACGTAGTCCATCCAGCCATT+AGG | + | chr8_4:30556318-30556337 | None:intergenic | 50.0% | |
| GTCATCCCCTTGATGTAGCT+TGG | + | chr8_4:30554672-30554691 | None:intergenic | 50.0% | |
| AGCTACATCAAGGGGATGAC+TGG | - | chr8_4:30554672-30554691 | Msa1322990:CDS | 50.0% | |
| ACTTGTCCCCTCAAGACACA+AGG | + | chr8_4:30555249-30555268 | None:intergenic | 50.0% | |
| AGAAGCTCCCTTCCCTTAGT+TGG | - | chr8_4:30555701-30555720 | Msa1322990:intron | 50.0% | |
| TTTCTCCTCCTGAAGGTCTC+AGG | - | chr8_4:30555745-30555764 | Msa1322990:intron | 50.0% | |
| GAATCGAACCTGAGACCTTC+AGG | + | chr8_4:30555756-30555775 | None:intergenic | 50.0% | |
| TCCCGTCACATGACAACAGA+TGG | - | chr8_4:30556093-30556112 | Msa1322990:intron | 50.0% | |
| GCCATCTGTTGTCATGTGAC+GGG | + | chr8_4:30556097-30556116 | None:intergenic | 50.0% | |
| CTCACTTACAAGCTCTTCGG+TGG | - | chr8_4:30556171-30556190 | Msa1322990:intron | 50.0% | |
| GCTCTTCGGTGGAGATATTG+GGG | - | chr8_4:30556182-30556201 | Msa1322990:intron | 50.0% | |
| AGTCCATCCAGCCATTAGGA+GGG | + | chr8_4:30556314-30556333 | None:intergenic | 50.0% | |
| TAGTCCATCCAGCCATTAGG+AGG | + | chr8_4:30556315-30556334 | None:intergenic | 50.0% | |
| ACGTAGTCCATCCAGCCATT+AGG | + | chr8_4:30556318-30556337 | None:intergenic | 50.0% | |
| GGAGCTTCTACAGTGCAGTC+AGG | + | chr8_4:30555690-30555709 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTTCAGG+AGG | + | chr8_4:30555753-30555772 | None:intergenic | 55.0% | |
| GCAGCAGTGCTGCCATCAAA+TGG | - | chr8_4:30556253-30556272 | Msa1322990:CDS | 55.0% | |
| TGACCCTCCTAATGGCTGGA+TGG | - | chr8_4:30556308-30556327 | Msa1322990:CDS | 55.0% | |
| GGAGCTTCTACAGTGCAGTC+AGG | + | chr8_4:30555690-30555709 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTTCAGG+AGG | + | chr8_4:30555753-30555772 | None:intergenic | 55.0% | |
| GCAGCAGTGCTGCCATCAAA+TGG | - | chr8_4:30556253-30556272 | Msa1322990:CDS | 55.0% | |
| TGACCCTCCTAATGGCTGGA+TGG | - | chr8_4:30556308-30556327 | Msa1322990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 30554548 | 30556383 | 30554548 | ID=Msa1322990;Name=Msa1322990 |
| chr8_4 | mRNA | 30554548 | 30556383 | 30554548 | ID=Msa1322990-mRNA-1;Parent=Msa1322990;Name=Msa1322990-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|152 |
| chr8_4 | exon | 30556197 | 30556383 | 30556197 | ID=Msa1322990-mRNA-1:exon:10147;Parent=Msa1322990-mRNA-1 |
| chr8_4 | exon | 30554548 | 30554819 | 30554548 | ID=Msa1322990-mRNA-1:exon:10146;Parent=Msa1322990-mRNA-1 |
| chr8_4 | CDS | 30556197 | 30556383 | 30556197 | ID=Msa1322990-mRNA-1:cds;Parent=Msa1322990-mRNA-1 |
| chr8_4 | CDS | 30554548 | 30554819 | 30554548 | ID=Msa1322990-mRNA-1:cds;Parent=Msa1322990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
