AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880910 MtrunA17_Chr1g0213031 94.196 224 12 1 1 224 1 223 1.62e-153 425
Msa0880910 MtrunA17_Chr1g0213021 89.189 222 24 0 5 226 4 225 5.48e-146 406
Msa0880910 MtrunA17_Chr1g0213011 61.538 221 85 0 6 226 2 222 9.05e-96 278
Msa0880910 MtrunA17_Chr1g0213051 51.598 219 104 1 5 221 2 220 7.22e-73 221
Msa0880910 MtrunA17_Chr1g0213041 49.528 212 105 1 9 218 6 217 7.81e-69 210
Msa0880910 MtrunA17_Chr7g0224381 45.238 168 92 0 5 172 2 169 1.11e-49 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880910 AT3G55120.1 49.761 209 105 0 9 217 16 224 4.80e-67 207
Msa0880910 AT5G66230.2 45.205 219 111 2 9 226 6 216 1.68e-52 177
Msa0880910 AT5G66220.1 45.783 166 89 1 62 226 2 167 5.35e-43 143

Find 63 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTTAGAGAAGCCTTTA+AGG 0.168675 6_1:-27760571 Msa0880910:CDS
TTCAGGTATTGTCTCATCTT+TGG 0.255423 6_1:+27760384 None:intergenic
GGTGGAGTTCATTGAATTTC+CGG 0.261011 6_1:-27764831 Msa0880910:CDS
CAAACACCAAATGGAACATT+AGG 0.304549 6_1:-27760510 Msa0880910:CDS
GTTAGAGGGTTAGATATTGA+TGG 0.330562 6_1:-27761269 Msa0880910:CDS
ATGTTCCTTCAGATTTCATA+TGG 0.333432 6_1:+27760622 None:intergenic
TCCTATTTCCTTGGTGGTGC+AGG 0.335100 6_1:-27764779 Msa0880910:intron
GCCTGCTTTGAAAGAGAGTT+TGG 0.339202 6_1:-27760284 Msa0880910:CDS
TCTTTCAAAGCAGGCGAAAC+AGG 0.349240 6_1:+27760292 None:intergenic
TAATGGTATGTAGGGGTTAG+AGG 0.356611 6_1:-27761284 Msa0880910:intron
ACCTGCACCACCAAGGAAAT+AGG 0.361057 6_1:+27764778 None:intergenic
TTTGTGAAGTTCACTGTATT+AGG 0.371421 6_1:-27761242 Msa0880910:CDS
CACTGTATTAGGAGTTTACT+TGG 0.384450 6_1:-27761231 Msa0880910:CDS
ATAACAGCATACTCATGTTC+AGG 0.391503 6_1:+27760367 None:intergenic
AAGATTGACGACTTCAACAT+TGG 0.399504 6_1:-27760238 Msa0880910:CDS
TATAAACAACAAGCCGCTTT+CGG 0.408427 6_1:-27760347 Msa0880910:CDS
AAACACCAAATGGAACATTA+GGG 0.415014 6_1:-27760509 Msa0880910:CDS
CTAACCCCTAATGTTCCATT+TGG 0.420625 6_1:+27760504 None:intergenic
TTCTTCAGACAAACACCAAA+TGG 0.421941 6_1:-27760519 Msa0880910:CDS
CACCTTCACTCCAGTGATCA+TGG 0.422784 6_1:+27764850 None:intergenic
GGCTTCTCTAAGTTCTTGAA+TGG 0.424062 6_1:+27760578 None:intergenic
AGGAGTTTACTTGGAAGAAA+AGG 0.434965 6_1:-27761222 Msa0880910:CDS
ACCAAGTCCTATTTCCTTGG+TGG 0.442954 6_1:-27764785 Msa0880910:CDS
ATGAAATCTGAAGGAACATA+TGG 0.443450 6_1:-27760618 Msa0880910:CDS
TCCACCAAGTCCTATTTCCT+TGG 0.465024 6_1:-27764788 Msa0880910:CDS
GCCGCTTTCGGAGGCAGTGT+TGG 0.468906 6_1:-27760335 Msa0880910:CDS
AAATAGGACTTGGTGGATGA+TGG 0.479938 6_1:+27764794 None:intergenic
GTTCATTGAATTTCCGGCAG+TGG 0.480687 6_1:-27764825 Msa0880910:CDS
GATGGAGGTGTCACCACTGC+CGG 0.484240 6_1:+27764812 None:intergenic
AGGTAGTGAATATGTGAGAA+AGG 0.489997 6_1:-27760664 Msa0880910:CDS
TGATATCTCGGTAGAAATCA+AGG 0.490821 6_1:+27761141 None:intergenic
CATCGAATAAATTTCTCAAA+GGG 0.503134 6_1:+27760708 None:intergenic
AATGGTATGTAGGGGTTAGA+GGG 0.508598 6_1:-27761283 Msa0880910:intron
GCCAAACTCTCTTTCAAAGC+AGG 0.514705 6_1:+27760283 None:intergenic
AACAGGAATTTCTCCGGTCA+TGG 0.514747 6_1:+27760309 None:intergenic
ACAAAGGTGAGAACACTAGA+AGG 0.516764 6_1:-27760684 Msa0880910:CDS
AGGGATTCAAAGAGCTGAGA+TGG 0.521295 6_1:+27761161 None:intergenic
TGTTCCTTCAGATTTCATAT+GGG 0.526558 6_1:+27760623 None:intergenic
TAGCATCACTTACTCCTAAG+TGG 0.528607 6_1:-27761196 Msa0880910:CDS
GCAGCAGCATCCATGATCAC+TGG 0.535344 6_1:-27764860 Msa0880910:CDS
ACCAAGGAAATAGGACTTGG+TGG 0.536120 6_1:+27764787 None:intergenic
ATCACTTACTCCTAAGTGGA+AGG 0.541188 6_1:-27761192 Msa0880910:CDS
ACATCGAATAAATTTCTCAA+AGG 0.541800 6_1:+27760707 None:intergenic
ATCCATGATCACTGGAGTGA+AGG 0.543867 6_1:-27764852 Msa0880910:CDS
GGAGTCTTGCCCTTCCACTT+AGG 0.546270 6_1:+27761182 None:intergenic
TGGTACCTTTGATGATATCT+CGG 0.556629 6_1:+27761129 None:intergenic
CTGAAGAAAACACCAGCCCC+TGG 0.557559 6_1:+27760534 None:intergenic
CATGATCACTGGAGTGAAGG+TGG 0.559960 6_1:-27764849 Msa0880910:CDS
GCAGTGTTGGAGACCATGAC+CGG 0.572482 6_1:-27760322 Msa0880910:CDS
AGGCGAAACAGGAATTTCTC+CGG 0.576812 6_1:+27760303 None:intergenic
GAAATTTATTCGATGTACAA+AGG 0.580122 6_1:-27760700 Msa0880910:CDS
TCCAACACTGCCTCCGAAAG+CGG 0.582725 6_1:+27760334 None:intergenic
ACCACCAAGGAAATAGGACT+TGG 0.610116 6_1:+27764784 None:intergenic
TTCTACCGAGATATCATCAA+AGG 0.610658 6_1:-27761134 Msa0880910:intron
ATTGCCCATATGAAATCTGA+AGG 0.611017 6_1:-27760627 Msa0880910:CDS
AAACAACAAGCCGCTTTCGG+AGG 0.621155 6_1:-27760344 Msa0880910:CDS
TAGGACTTGGTGGATGATGG+AGG 0.628115 6_1:+27764797 None:intergenic
GATATCTCGGTAGAAATCAA+GGG 0.631456 6_1:+27761142 None:intergenic
AAGAAAACACCAGCCCCTGG+TGG 0.637698 6_1:+27760537 None:intergenic
TCACTTACTCCTAAGTGGAA+GGG 0.638389 6_1:-27761191 Msa0880910:CDS
AAGAAATACCTGCACCACCA+AGG 0.648491 6_1:+27764771 None:intergenic
ATAGCTATAAGCTATGGCAA+AGG 0.662193 6_1:-27764882 None:intergenic
AACACCAAATGGAACATTAG+GGG 0.677472 6_1:-27760508 Msa0880910:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTATTATTTTTT+GGG + chr6_1:27763049-27763068 None:intergenic 0.0%
!!! TTTTTATTATTATTATTTTT+TGG + chr6_1:27763050-27763069 None:intergenic 0.0%
!! TCTAATAATTAATATATAAC+AGG - chr6_1:27760966-27760985 Msa0880910:intron 10.0%
!!! AAAAATAAATCTTTTTTATG+AGG + chr6_1:27761148-27761167 None:intergenic 10.0%
!!! AAAAAAAAAAAAAGTCTTTT+TGG + chr6_1:27761737-27761756 None:intergenic 10.0%
!! ATCAAAACTTTATAAAAAAA+AGG - chr6_1:27762385-27762404 Msa0880910:intron 10.0%
!! TCAAAACTTTATAAAAAAAA+GGG - chr6_1:27762386-27762405 Msa0880910:intron 10.0%
!! AATTACAGATATAAAAAATA+AGG - chr6_1:27762843-27762862 Msa0880910:intron 10.0%
!! ATTACAGATATAAAAAATAA+GGG - chr6_1:27762844-27762863 Msa0880910:intron 10.0%
!!! TTTTATTGATCATTCTTTTT+AGG + chr6_1:27760895-27760914 None:intergenic 15.0%
!! TTATACATTAACAATCTAAT+AGG - chr6_1:27761257-27761276 Msa0880910:CDS 15.0%
!! TATCAAAATATAATGTAATG+TGG + chr6_1:27761287-27761306 None:intergenic 15.0%
!!! AAACATTTTCTTCTTTTTTA+TGG + chr6_1:27761438-27761457 None:intergenic 15.0%
!! TCAAATATAAATATAAGTAG+CGG + chr6_1:27761904-27761923 None:intergenic 15.0%
!!! AGAACCTTTTTTTTTTTTTT+AGG - chr6_1:27761965-27761984 Msa0880910:intron 15.0%
!! CTTACCTAAAAAAAAAAAAA+AGG + chr6_1:27761972-27761991 None:intergenic 15.0%
!! CATCTTACATTATTATATAA+AGG + chr6_1:27762026-27762045 None:intergenic 15.0%
!!! ACAATAGTTTTTATTGATAT+GGG + chr6_1:27762283-27762302 None:intergenic 15.0%
!!! AACAATAGTTTTTATTGATA+TGG + chr6_1:27762284-27762303 None:intergenic 15.0%
!!! AAAAGAATATTTCTATTTCT+GGG + chr6_1:27762908-27762927 None:intergenic 15.0%
!!! TAAAAGAATATTTCTATTTC+TGG + chr6_1:27762909-27762928 None:intergenic 15.0%
!! TATGTCTAATTAAAAAATTG+AGG - chr6_1:27763265-27763284 Msa0880910:intron 15.0%
!! ATGTCTAATTAAAAAATTGA+GGG - chr6_1:27763266-27763285 Msa0880910:intron 15.0%
!!! TGATATTTTAATAAACCTTA+AGG - chr6_1:27763297-27763316 Msa0880910:intron 15.0%
!!! GATATTTTAATAAACCTTAA+GGG - chr6_1:27763298-27763317 Msa0880910:intron 15.0%
!!! AATTTTGATGGTTTTTTTTA+GGG + chr6_1:27763340-27763359 None:intergenic 15.0%
!! AATGTATACTCATTTATATA+TGG - chr6_1:27764357-27764376 Msa0880910:intron 15.0%
!! ATGTATACTCATTTATATAT+GGG - chr6_1:27764358-27764377 Msa0880910:intron 15.0%
!!! TTAAAATGTGTTGATTAAAT+TGG + chr6_1:27764658-27764677 None:intergenic 15.0%
!! AATCTTTAACAAATGTCATA+TGG - chr6_1:27760847-27760866 Msa0880910:intron 20.0%
!! ATCTTTAACAAATGTCATAT+GGG - chr6_1:27760848-27760867 Msa0880910:intron 20.0%
!! AAATCTTACTTTCATAAGTT+TGG + chr6_1:27760997-27761016 None:intergenic 20.0%
!! ATTATAGATAATTACAACGA+GGG - chr6_1:27761075-27761094 Msa0880910:intron 20.0%
!!! ATAAATCTTTTTTATGAGGT+CGG + chr6_1:27761144-27761163 None:intergenic 20.0%
!! AAACATACTTAAAGTAAGTT+TGG - chr6_1:27761707-27761726 Msa0880910:intron 20.0%
!!! ATGGATATTTTAAAAAGTCA+CGG - chr6_1:27761788-27761807 Msa0880910:intron 20.0%
!! ACTCTATTGATATTAATATG+AGG + chr6_1:27762080-27762099 None:intergenic 20.0%
!!! ACTGTTTTTTTAAAACTAGA+GGG + chr6_1:27762460-27762479 None:intergenic 20.0%
!! TTTACCTTAAATTCCTTTAA+CGG - chr6_1:27762590-27762609 Msa0880910:intron 20.0%
!! ATAGATATACAATCAAAAAC+TGG + chr6_1:27762816-27762835 None:intergenic 20.0%
!! TGTCTAATTAAAAAATTGAG+GGG - chr6_1:27763267-27763286 Msa0880910:intron 20.0%
!!! CAATTTTGATGGTTTTTTTT+AGG + chr6_1:27763341-27763360 None:intergenic 20.0%
!! ATAACCATGATTTATCTAAA+AGG - chr6_1:27763516-27763535 Msa0880910:intron 20.0%
!!! TTTTCCATGATTTTCATTTT+CGG + chr6_1:27763673-27763692 None:intergenic 20.0%
!! TGAAAATCATGGAAAAATAT+TGG - chr6_1:27763677-27763696 Msa0880910:intron 20.0%
!! GAAAATCATGGAAAAATATT+GGG - chr6_1:27763678-27763697 Msa0880910:intron 20.0%
!!! GATGTTTTTTTTATTGCTAA+TGG - chr6_1:27763799-27763818 Msa0880910:intron 20.0%
!! TATCATTATGTAGTATATGT+TGG + chr6_1:27763994-27764013 None:intergenic 20.0%
!! GATATTTAGATACATGAAAT+AGG + chr6_1:27764636-27764655 None:intergenic 20.0%
! TCTTTAACAAATGTCATATG+GGG - chr6_1:27760849-27760868 Msa0880910:intron 25.0%
! AAGTTCATCTATTAGTTAGA+GGG + chr6_1:27760941-27760960 None:intergenic 25.0%
! AAAGTTCATCTATTAGTTAG+AGG + chr6_1:27760942-27760961 None:intergenic 25.0%
! GATTATAGATAATTACAACG+AGG - chr6_1:27761074-27761093 Msa0880910:intron 25.0%
! TTAAGTATGTTTGATCTCAT+CGG + chr6_1:27761699-27761718 None:intergenic 25.0%
! CAATCCAATGCAAAATTTAA+CGG - chr6_1:27762200-27762219 Msa0880910:intron 25.0%
! TATTTACAGTCACATACAAT+AGG + chr6_1:27762323-27762342 None:intergenic 25.0%
! GTTGTTTAATAAAACCTCAA+GGG + chr6_1:27762428-27762447 None:intergenic 25.0%
!! TGTTGTTTAATAAAACCTCA+AGG + chr6_1:27762429-27762448 None:intergenic 25.0%
!!! TGTTTTTTTAAAACTAGAGG+GGG + chr6_1:27762458-27762477 None:intergenic 25.0%
!!! CTGTTTTTTTAAAACTAGAG+GGG + chr6_1:27762459-27762478 None:intergenic 25.0%
!!! GACTGTTTTTTTAAAACTAG+AGG + chr6_1:27762461-27762480 None:intergenic 25.0%
! TTACCTTAAATTCCTTTAAC+GGG - chr6_1:27762591-27762610 Msa0880910:intron 25.0%
! TTGAAATGAAAGTTACGTAA+TGG + chr6_1:27762620-27762639 None:intergenic 25.0%
!! CAAATGTAGAAAGTTTTTGT+TGG + chr6_1:27762987-27763006 None:intergenic 25.0%
! AAAAAAAAGAGGACATAACA+AGG - chr6_1:27763065-27763084 Msa0880910:intron 25.0%
! AATTTCAAGGGAAATATAGT+GGG - chr6_1:27763088-27763107 Msa0880910:intron 25.0%
!!! TTCTTCCTCAATTTTTGAAA+CGG + chr6_1:27763152-27763171 None:intergenic 25.0%
! GTCTAATTAAAAAATTGAGG+GGG - chr6_1:27763268-27763287 Msa0880910:intron 25.0%
!!! ATTTTAATAAACCTTAAGGG+AGG - chr6_1:27763301-27763320 Msa0880910:intron 25.0%
!! TCAACCTTTTAGATAAATCA+TGG + chr6_1:27763523-27763542 None:intergenic 25.0%
!! TTTTATTGCTAATGGTATGT+AGG - chr6_1:27763807-27763826 Msa0880910:intron 25.0%
! TTTATTGCTAATGGTATGTA+GGG - chr6_1:27763808-27763827 Msa0880910:intron 25.0%
! TTCCATAACATTATTGATGT+AGG - chr6_1:27764056-27764075 Msa0880910:intron 25.0%
! TTCCTACATCAATAATGTTA+TGG + chr6_1:27764061-27764080 None:intergenic 25.0%
! TTTATTGTCGACAAAAACTA+CGG - chr6_1:27764216-27764235 Msa0880910:intron 25.0%
! ACATGCTAACTATAATTCAT+TGG + chr6_1:27764258-27764277 None:intergenic 25.0%
! ATTTATATATGGGTGTGTTT+AGG - chr6_1:27764368-27764387 Msa0880910:intron 25.0%
! CATCGAATAAATTTCTCAAA+GGG + chr6_1:27764395-27764414 None:intergenic 25.0%
! ACATCGAATAAATTTCTCAA+AGG + chr6_1:27764396-27764415 None:intergenic 25.0%
! GAAATTTATTCGATGTACAA+AGG - chr6_1:27764400-27764419 Msa0880910:intron 25.0%
! TGGAAAAAATTGAACCTTAA+AGG + chr6_1:27764546-27764565 None:intergenic 25.0%
! CTTATAATGTTTTCACTGCT+AGG - chr6_1:27760384-27760403 Msa0880910:CDS 30.0%
CTGAACAATTCATAGTTCTT+TGG - chr6_1:27760671-27760690 Msa0880910:CDS 30.0%
!! TGAATACACAGTTCTAAAGA+TGG + chr6_1:27760764-27760783 None:intergenic 30.0%
AACTCATATGGTGTTTAATC+TGG - chr6_1:27761039-27761058 Msa0880910:intron 30.0%
TTTAATCTGGTAAGTATGGT+GGG - chr6_1:27761052-27761071 Msa0880910:intron 30.0%
GTTTCGTGAGGAAATAATTT+GGG + chr6_1:27761586-27761605 None:intergenic 30.0%
TGTTTCGTGAGGAAATAATT+TGG + chr6_1:27761587-27761606 None:intergenic 30.0%
AAACTTACCTATCACTATCA+TGG - chr6_1:27761618-27761637 Msa0880910:intron 30.0%
!!! GCATGACTTTTTTAGTTGAA+TGG - chr6_1:27761769-27761788 Msa0880910:intron 30.0%
TAATATGAGGAAGATTTGTG+CGG + chr6_1:27762067-27762086 None:intergenic 30.0%
TCGTGAATGTTTCATGAATA+TGG - chr6_1:27762234-27762253 Msa0880910:intron 30.0%
AGGTAAAAATGCAAAAGCTA+CGG + chr6_1:27762577-27762596 None:intergenic 30.0%
AAACCCGTTAAAGGAATTTA+AGG + chr6_1:27762597-27762616 None:intergenic 30.0%
GACATAACAAGGAATTTCAA+GGG - chr6_1:27763076-27763095 Msa0880910:intron 30.0%
GAATTTCAAGGGAAATATAG+TGG - chr6_1:27763087-27763106 Msa0880910:intron 30.0%
! TCTTTCTTTTCTTTCTTCCA+CGG + chr6_1:27763119-27763138 None:intergenic 30.0%
ACAAGTGATTGAGTAGTATT+AGG + chr6_1:27763457-27763476 None:intergenic 30.0%
AGAGATCAATAAGTCATTAG+AGG + chr6_1:27763492-27763511 None:intergenic 30.0%
AACCCCTAAATCAAATATTG+AGG - chr6_1:27763587-27763606 Msa0880910:intron 30.0%
ACCCCTAAATCAAATATTGA+GGG - chr6_1:27763588-27763607 Msa0880910:intron 30.0%
! TCCCTCAATATTTGATTTAG+GGG + chr6_1:27763592-27763611 None:intergenic 30.0%
! GTCCCTCAATATTTGATTTA+GGG + chr6_1:27763593-27763612 None:intergenic 30.0%
! AGTCCCTCAATATTTGATTT+AGG + chr6_1:27763594-27763613 None:intergenic 30.0%
!!! TGATTGAAGCATTGCTTTTA+TGG - chr6_1:27763748-27763767 Msa0880910:intron 30.0%
TTATTGCTAATGGTATGTAG+GGG - chr6_1:27763809-27763828 Msa0880910:intron 30.0%
TTTGTGAAGTTCACTGTATT+AGG - chr6_1:27763858-27763877 Msa0880910:intron 30.0%
ACAACTGCAAATGCAATTTA+AGG - chr6_1:27764298-27764317 Msa0880910:intron 30.0%
TGTTCCTTCAGATTTCATAT+GGG + chr6_1:27764480-27764499 None:intergenic 30.0%
ATGTTCCTTCAGATTTCATA+TGG + chr6_1:27764481-27764500 None:intergenic 30.0%
ATGAAATCTGAAGGAACATA+TGG - chr6_1:27764482-27764501 Msa0880910:intron 30.0%
AAACACCAAATGGAACATTA+GGG - chr6_1:27764591-27764610 Msa0880910:intron 30.0%
! CTTCAGTATCGAATTTAGTG+AGG - chr6_1:27760471-27760490 Msa0880910:intron 35.0%
! TGAGGTACCAAAATCCTTAA+CGG - chr6_1:27760489-27760508 Msa0880910:intron 35.0%
! CAAAATCCTTAACGGCTTTT+CGG - chr6_1:27760497-27760516 Msa0880910:intron 35.0%
TTTCGGCCTTACAAAATGTT+AGG - chr6_1:27760514-27760533 Msa0880910:CDS 35.0%
TTCGGCCTTACAAAATGTTA+GGG - chr6_1:27760515-27760534 Msa0880910:CDS 35.0%
GAAATAGTGTTCCATCACAA+CGG - chr6_1:27760541-27760560 Msa0880910:CDS 35.0%
AAATAGTGTTCCATCACAAC+GGG - chr6_1:27760542-27760561 Msa0880910:CDS 35.0%
TATTCTATATCCCGTTGTGA+TGG + chr6_1:27760555-27760574 None:intergenic 35.0%
! CTTCCTTTGAAGAACTCATA+TGG - chr6_1:27761027-27761046 Msa0880910:intron 35.0%
ACACCATATGAGTTCTTCAA+AGG + chr6_1:27761033-27761052 None:intergenic 35.0%
GGTGTTTAATCTGGTAAGTA+TGG - chr6_1:27761048-27761067 Msa0880910:intron 35.0%
GTTTAATCTGGTAAGTATGG+TGG - chr6_1:27761051-27761070 Msa0880910:intron 35.0%
TGAAGACGTAAGCATGAAAT+AGG + chr6_1:27761220-27761239 None:intergenic 35.0%
TTATTTCCTCACGAAACATC+AGG - chr6_1:27761589-27761608 Msa0880910:intron 35.0%
AGTAGCGGTGAAAATAAGTT+CGG + chr6_1:27761889-27761908 None:intergenic 35.0%
! ACACACAAGTGTATTTGTTG+CGG - chr6_1:27762144-27762163 Msa0880910:intron 35.0%
TGAGCGGATCATGATAAAAA+GGG + chr6_1:27762174-27762193 None:intergenic 35.0%
ATGAGCGGATCATGATAAAA+AGG + chr6_1:27762175-27762194 None:intergenic 35.0%
CATTGGATTGAATACATGAG+CGG + chr6_1:27762190-27762209 None:intergenic 35.0%
! GAAGCCGTTAAATTTTGCAT+TGG + chr6_1:27762207-27762226 None:intergenic 35.0%
AATTATATTGACCTCCCTTG+AGG - chr6_1:27762411-27762430 Msa0880910:intron 35.0%
GTTTAATAAAACCTCAAGGG+AGG + chr6_1:27762425-27762444 None:intergenic 35.0%
CTAACACCGTTAACTTTGAA+GGG + chr6_1:27762488-27762507 None:intergenic 35.0%
ACTAACACCGTTAACTTTGA+AGG + chr6_1:27762489-27762508 None:intergenic 35.0%
TCATGTGCTAAGAAGTTAAG+AGG + chr6_1:27762554-27762573 None:intergenic 35.0%
!! GCTTACACAAACTTGTTGAA+AGG + chr6_1:27762683-27762702 None:intergenic 35.0%
TCATGTTATCTTATGCCCTA+AGG - chr6_1:27762867-27762886 Msa0880910:intron 35.0%
CATGTTATCTTATGCCCTAA+GGG - chr6_1:27762868-27762887 Msa0880910:intron 35.0%
!! ACACATTAACTTGTGCCTTA+AGG - chr6_1:27763007-27763026 Msa0880910:intron 35.0%
!! CACATTAACTTGTGCCTTAA+GGG - chr6_1:27763008-27763027 Msa0880910:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + chr6_1:27763025-27763044 None:intergenic 35.0%
GGACATAACAAGGAATTTCA+AGG - chr6_1:27763075-27763094 Msa0880910:intron 35.0%
TGCAAACAATGTAAACCAAG+AGG - chr6_1:27763203-27763222 Msa0880910:intron 35.0%
GCAAACAATGTAAACCAAGA+GGG - chr6_1:27763204-27763223 Msa0880910:intron 35.0%
CAAACAATGTAAACCAAGAG+GGG - chr6_1:27763205-27763224 Msa0880910:intron 35.0%
TATCACATTGAGGATTGAGT+AGG - chr6_1:27763235-27763254 Msa0880910:intron 35.0%
ATCACATTGAGGATTGAGTA+GGG - chr6_1:27763236-27763255 Msa0880910:intron 35.0%
!! TGTGGCTCTATCAATTTTGA+TGG + chr6_1:27763352-27763371 None:intergenic 35.0%
ACTGCCGAAAATGAAAATCA+TGG - chr6_1:27763666-27763685 Msa0880910:intron 35.0%
GTTAGAGGGTTAGATATTGA+TGG - chr6_1:27763831-27763850 Msa0880910:intron 35.0%
CACTGTATTAGGAGTTTACT+TGG - chr6_1:27763869-27763888 Msa0880910:intron 35.0%
AGGAGTTTACTTGGAAGAAA+AGG - chr6_1:27763878-27763897 Msa0880910:intron 35.0%
GATATCTCGGTAGAAATCAA+GGG + chr6_1:27763961-27763980 None:intergenic 35.0%
TGATATCTCGGTAGAAATCA+AGG + chr6_1:27763962-27763981 None:intergenic 35.0%
TTCTACCGAGATATCATCAA+AGG - chr6_1:27763966-27763985 Msa0880910:intron 35.0%
! TGGTACCTTTGATGATATCT+CGG + chr6_1:27763974-27763993 None:intergenic 35.0%
CTTGCACATATACTGTTGAA+TGG - chr6_1:27764185-27764204 Msa0880910:intron 35.0%
AGGTAGTGAATATGTGAGAA+AGG - chr6_1:27764436-27764455 Msa0880910:intron 35.0%
ATTGCCCATATGAAATCTGA+AGG - chr6_1:27764473-27764492 Msa0880910:intron 35.0%
AGAACTTAGAGAAGCCTTTA+AGG - chr6_1:27764529-27764548 Msa0880910:intron 35.0%
!!! AAGGTTCAATTTTTTCCACC+AGG - chr6_1:27764548-27764567 Msa0880910:intron 35.0%
!!! AGGTTCAATTTTTTCCACCA+GGG - chr6_1:27764549-27764568 Msa0880910:intron 35.0%
TTCTTCAGACAAACACCAAA+TGG - chr6_1:27764581-27764600 Msa0880910:intron 35.0%
CAAACACCAAATGGAACATT+AGG - chr6_1:27764590-27764609 Msa0880910:intron 35.0%
AACACCAAATGGAACATTAG+GGG - chr6_1:27764592-27764611 Msa0880910:intron 35.0%
! TTCAGGTATTGTCTCATCTT+TGG + chr6_1:27764719-27764738 None:intergenic 35.0%
ATAACAGCATACTCATGTTC+AGG + chr6_1:27764736-27764755 None:intergenic 35.0%
! TATAAACAACAAGCCGCTTT+CGG - chr6_1:27764753-27764772 Msa0880910:intron 35.0%
AAGATTGACGACTTCAACAT+TGG - chr6_1:27764862-27764881 Msa0880910:CDS 35.0%
GGTGGAGTTCATTGAATTTC+CGG - chr6_1:27760269-27760288 Msa0880910:CDS 40.0%
!! AAATAGGACTTGGTGGATGA+TGG + chr6_1:27760309-27760328 None:intergenic 40.0%
TGACAGAATTTATGTGCGTC+GGG + chr6_1:27760442-27760461 None:intergenic 40.0%
GTGACAGAATTTATGTGCGT+CGG + chr6_1:27760443-27760462 None:intergenic 40.0%
! CGAAAAGCCGTTAAGGATTT+TGG + chr6_1:27760499-27760518 None:intergenic 40.0%
GCCTTACAAAATGTTAGGGA+GGG - chr6_1:27760519-27760538 Msa0880910:CDS 40.0%
! TCCCTCCCTAACATTTTGTA+AGG + chr6_1:27760523-27760542 None:intergenic 40.0%
! AGAGGGAGTCAGTGAATTTT+AGG + chr6_1:27760924-27760943 None:intergenic 40.0%
! CACACAAGTGTATTTGTTGC+GGG - chr6_1:27762145-27762164 Msa0880910:intron 40.0%
GAGCGGATCATGATAAAAAG+GGG + chr6_1:27762173-27762192 None:intergenic 40.0%
TCACCTCCCTTCAAAGTTAA+CGG - chr6_1:27762479-27762498 Msa0880910:intron 40.0%
! ACGTAATGGAAACCCGTTAA+AGG + chr6_1:27762606-27762625 None:intergenic 40.0%
AGAGGGGAAATGAATTCGTT+TGG + chr6_1:27762735-27762754 None:intergenic 40.0%
GCAAAACTATGGTACTAGAG+GGG + chr6_1:27762751-27762770 None:intergenic 40.0%
GGCAAAACTATGGTACTAGA+GGG + chr6_1:27762752-27762771 None:intergenic 40.0%
TGGCAAAACTATGGTACTAG+AGG + chr6_1:27762753-27762772 None:intergenic 40.0%
!! CAAAGTGTTGTCACTACAGA+AGG + chr6_1:27762783-27762802 None:intergenic 40.0%
CTTCTGTAGTGACAACACTT+TGG - chr6_1:27762781-27762800 Msa0880910:intron 40.0%
TTGCTTAACATGTGCCCTTA+GGG + chr6_1:27762885-27762904 None:intergenic 40.0%
! TTCAAGGGAAATATAGTGGG+TGG - chr6_1:27763091-27763110 Msa0880910:intron 40.0%
! TGCTGCCGTTTCAAAAATTG+AGG - chr6_1:27763144-27763163 Msa0880910:intron 40.0%
TCACATTGAGGATTGAGTAG+GGG - chr6_1:27763237-27763256 Msa0880910:intron 40.0%
! AATTGCATTGACCTCCCTTA+AGG + chr6_1:27763315-27763334 None:intergenic 40.0%
TAATGGTATGTAGGGGTTAG+AGG - chr6_1:27763816-27763835 Msa0880910:intron 40.0%
AATGGTATGTAGGGGTTAGA+GGG - chr6_1:27763817-27763836 Msa0880910:intron 40.0%
TAGCATCACTTACTCCTAAG+TGG - chr6_1:27763904-27763923 Msa0880910:intron 40.0%
ATCACTTACTCCTAAGTGGA+AGG - chr6_1:27763908-27763927 Msa0880910:intron 40.0%
TCACTTACTCCTAAGTGGAA+GGG - chr6_1:27763909-27763928 Msa0880910:intron 40.0%
ACAAAGGTGAGAACACTAGA+AGG - chr6_1:27764416-27764435 Msa0880910:intron 40.0%
GGCTTCTCTAAGTTCTTGAA+TGG + chr6_1:27764525-27764544 None:intergenic 40.0%
!!! GGTTCAATTTTTTCCACCAG+GGG - chr6_1:27764550-27764569 Msa0880910:intron 40.0%
CTAACCCCTAATGTTCCATT+TGG + chr6_1:27764599-27764618 None:intergenic 40.0%
ATCCATGATCACTGGAGTGA+AGG - chr6_1:27760248-27760267 Msa0880910:CDS 45.0%
GTTCATTGAATTTCCGGCAG+TGG - chr6_1:27760275-27760294 Msa0880910:CDS 45.0%
TCCACCAAGTCCTATTTCCT+TGG - chr6_1:27760312-27760331 Msa0880910:CDS 45.0%
ACCAAGGAAATAGGACTTGG+TGG + chr6_1:27760316-27760335 None:intergenic 45.0%
ACCAAGTCCTATTTCCTTGG+TGG - chr6_1:27760315-27760334 Msa0880910:CDS 45.0%
ACCACCAAGGAAATAGGACT+TGG + chr6_1:27760319-27760338 None:intergenic 45.0%
AAGAAATACCTGCACCACCA+AGG + chr6_1:27760332-27760351 None:intergenic 45.0%
GACAGAATTTATGTGCGTCG+GGG + chr6_1:27760441-27760460 None:intergenic 45.0%
GGCCTTACAAAATGTTAGGG+AGG - chr6_1:27760518-27760537 Msa0880910:CDS 45.0%
! CCACACACCATGATAGTGAT+AGG + chr6_1:27761628-27761647 None:intergenic 45.0%
CCTATCACTATCATGGTGTG+TGG - chr6_1:27761625-27761644 Msa0880910:intron 45.0%
!!! TTGTGCGGTGCTACAGTTTT+GGG + chr6_1:27762052-27762071 None:intergenic 45.0%
!!! TTTGTGCGGTGCTACAGTTT+TGG + chr6_1:27762053-27762072 None:intergenic 45.0%
! ACACCGTTAACTTTGAAGGG+AGG + chr6_1:27762485-27762504 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG + chr6_1:27762886-27762905 None:intergenic 45.0%
!! AAATATAGTGGGTGGAACCG+TGG - chr6_1:27763099-27763118 Msa0880910:intron 45.0%
ACAATGTAAACCAAGAGGGG+AGG - chr6_1:27763208-27763227 Msa0880910:intron 45.0%
!! GGGAGGTGTTTATCACATTG+AGG - chr6_1:27763225-27763244 Msa0880910:intron 45.0%
CCACTGCATATGCACTTATG+TGG + chr6_1:27763370-27763389 None:intergenic 45.0%
CCACATAAGTGCATATGCAG+TGG - chr6_1:27763367-27763386 Msa0880910:intron 45.0%
AGGGATTCAAAGAGCTGAGA+TGG + chr6_1:27763942-27763961 None:intergenic 45.0%
AACAGGAATTTCTCCGGTCA+TGG + chr6_1:27764794-27764813 None:intergenic 45.0%
AGGCGAAACAGGAATTTCTC+CGG + chr6_1:27764800-27764819 None:intergenic 45.0%
TCTTTCAAAGCAGGCGAAAC+AGG + chr6_1:27764811-27764830 None:intergenic 45.0%
!! GCCTGCTTTGAAAGAGAGTT+TGG - chr6_1:27764816-27764835 Msa0880910:CDS 45.0%
GCCAAACTCTCTTTCAAAGC+AGG + chr6_1:27764820-27764839 None:intergenic 45.0%
!! TAAAAATATATAATTGAAAT+AGG + chr6_1:27761349-27761368 None:intergenic 5.0%
!!! TTTATTTTTTAAAAAAAACA+TGG - chr6_1:27761824-27761843 Msa0880910:intron 5.0%
!! ATAATAATAATAAAAAAAAG+AGG - chr6_1:27763054-27763073 Msa0880910:intron 5.0%
!!! GATTTTTTTATTTTTTTTTT+AGG + chr6_1:27763415-27763434 None:intergenic 5.0%
!! AAAAAATAAAACAAATTATT+AGG + chr6_1:27764024-27764043 None:intergenic 5.0%
CACCTTCACTCCAGTGATCA+TGG + chr6_1:27760253-27760272 None:intergenic 50.0%
CATGATCACTGGAGTGAAGG+TGG - chr6_1:27760251-27760270 Msa0880910:CDS 50.0%
!! TAGGACTTGGTGGATGATGG+AGG + chr6_1:27760306-27760325 None:intergenic 50.0%
!! TCCTATTTCCTTGGTGGTGC+AGG - chr6_1:27760321-27760340 Msa0880910:CDS 50.0%
ACCTGCACCACCAAGGAAAT+AGG + chr6_1:27760325-27760344 None:intergenic 50.0%
GTAAGGCCGAAAAGCCGTTA+AGG + chr6_1:27760506-27760525 None:intergenic 50.0%
TCGAGTCCTGATGTTTCGTG+AGG + chr6_1:27761598-27761617 None:intergenic 50.0%
TACTCTCCTGAGAGAGGTTG+TGG + chr6_1:27762117-27762136 None:intergenic 50.0%
TCGTGATACTCTCCTGAGAG+AGG + chr6_1:27762123-27762142 None:intergenic 50.0%
GGCGCATGATGGCAAAACTA+TGG + chr6_1:27762762-27762781 None:intergenic 50.0%
! TCACTACAGAAGGCGCATGA+TGG + chr6_1:27762773-27762792 None:intergenic 50.0%
GTGATAAACACCTCCCCTCT+TGG + chr6_1:27763221-27763240 None:intergenic 50.0%
CATTGAGGATTGAGTAGGGG+AGG - chr6_1:27763240-27763259 Msa0880910:intron 50.0%
!!! CAATTTTTTCCACCAGGGGC+TGG - chr6_1:27764554-27764573 Msa0880910:intron 50.0%
! AAACAACAAGCCGCTTTCGG+AGG - chr6_1:27764756-27764775 Msa0880910:intron 50.0%
GCAGCAGCATCCATGATCAC+TGG - chr6_1:27760240-27760259 Msa0880910:CDS 55.0%
ATGTCGCCACAACCTCTCTC+AGG - chr6_1:27762108-27762127 Msa0880910:intron 55.0%
GGAGTCTTGCCCTTCCACTT+AGG + chr6_1:27763921-27763940 None:intergenic 55.0%
AAGAAAACACCAGCCCCTGG+TGG + chr6_1:27764566-27764585 None:intergenic 55.0%
CTGAAGAAAACACCAGCCCC+TGG + chr6_1:27764569-27764588 None:intergenic 55.0%
TCCAACACTGCCTCCGAAAG+CGG + chr6_1:27764769-27764788 None:intergenic 55.0%
! GCAGTGTTGGAGACCATGAC+CGG - chr6_1:27764778-27764797 Msa0880910:intron 55.0%
!! GATGGAGGTGTCACCACTGC+CGG + chr6_1:27760291-27760310 None:intergenic 60.0%
! GCCGCTTTCGGAGGCAGTGT+TGG - chr6_1:27764765-27764784 Msa0880910:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 27760231 27764891 27760231 ID=Msa0880910;Name=Msa0880910
chr6_1 mRNA 27760231 27764891 27760231 ID=Msa0880910-mRNA-1;Parent=Msa0880910;Name=Msa0880910-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|226
chr6_1 exon 27764780 27764891 27764780 ID=Msa0880910-mRNA-1:exon:6880;Parent=Msa0880910-mRNA-1
chr6_1 exon 27761135 27761293 27761135 ID=Msa0880910-mRNA-1:exon:6879;Parent=Msa0880910-mRNA-1
chr6_1 exon 27760509 27760732 27760509 ID=Msa0880910-mRNA-1:exon:6878;Parent=Msa0880910-mRNA-1
chr6_1 exon 27760231 27760416 27760231 ID=Msa0880910-mRNA-1:exon:6877;Parent=Msa0880910-mRNA-1
chr6_1 CDS 27764780 27764891 27764780 ID=Msa0880910-mRNA-1:cds;Parent=Msa0880910-mRNA-1
chr6_1 CDS 27761135 27761293 27761135 ID=Msa0880910-mRNA-1:cds;Parent=Msa0880910-mRNA-1
chr6_1 CDS 27760509 27760732 27760509 ID=Msa0880910-mRNA-1:cds;Parent=Msa0880910-mRNA-1
chr6_1 CDS 27760231 27760416 27760231 ID=Msa0880910-mRNA-1:cds;Parent=Msa0880910-mRNA-1
Gene Sequence

>Msa0880910

ATGGCAAAGGCAGCAGCATCCATGATCACTGGAGTGAAGGTGGAGTTCATTGAATTTCCGGCAGTGGTGACACCTCCATCATCCACCAAGTCCTATTTCCTTGGTGGTGCAGGGGTTAGAGGGTTAGATATTGATGGAGAGTTTGTGAAGTTCACTGTATTAGGAGTTTACTTGGAAGAAAAGGCTATAGCATCACTTACTCCTAAGTGGAAGGGCAAGACTCCATCTCAGCTCTTTGAATCCCTTGATTTCTACCGAGATATCATCAAAGGTCCCTTTGAGAAATTTATTCGATGTACAAAGGTGAGAACACTAGAAGGTAGTGAATATGTGAGAAAGGTATCAGAAAATTGCATTGCCCATATGAAATCTGAAGGAACATATGGCGATGCAGAAGAAAAAGCCATTCAAGAACTTAGAGAAGCCTTTAAGGTTCAATTTTTTCCACCAGGGGCTGGTGTTTTCTTCAGACAAACACCAAATGGAACATTAGGGCTTAGATTCTCCAAAGATGAGACAATACCTGAACATGAGTATGCTGTTATAAACAACAAGCCGCTTTCGGAGGCAGTGTTGGAGACCATGACCGGAGAAATTCCTGTTTCGCCTGCTTTGAAAGAGAGTTTGGCTACAAGATTTTGTGAGTTTATGAAGATTGACGACTTCAACATTGGAAACTGA

Protein sequence

>Msa0880910

MAKAAASMITGVKVEFIEFPAVVTPPSSTKSYFLGGAGVRGLDIDGEFVKFTVLGVYLEEKAIASLTPKWKGKTPSQLFESLDFYRDIIKGPFEKFIRCTKVRTLEGSEYVRKVSENCIAHMKSEGTYGDAEEKAIQELREAFKVQFFPPGAGVFFRQTPNGTLGLRFSKDETIPEHEYAVINNKPLSEAVLETMTGEIPVSPALKESLATRFCEFMKIDDFNIGN*