AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1284020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284020 MtrunA17_Chr8g0355811 96.154 156 6 0 1 156 1 156 2.62e-110 310
Msa1284020 MtrunA17_Chr8g0355821 87.662 154 19 0 1 154 1 154 2.17e-101 287
Msa1284020 MtrunA17_Chr8g0355801 85.897 156 22 0 1 156 1 156 2.76e-99 282
Msa1284020 MtrunA17_Chr8g0355791 85.256 156 23 0 1 156 1 156 1.84e-97 277
Msa1284020 MtrunA17_Chr8g0355771 84.615 156 24 0 1 156 1 156 2.83e-96 275
Msa1284020 MtrunA17_Chr8g0355741 78.981 157 32 1 1 156 1 157 2.21e-89 257
Msa1284020 MtrunA17_Chr8g0355721 75.159 157 37 2 1 156 1 156 1.26e-85 248
Msa1284020 MtrunA17_Chr8g0355661 73.885 157 39 2 1 156 1 156 9.61e-84 243
Msa1284020 MtrunA17_Chr8g0355781 71.711 152 42 1 1 151 1 152 4.44e-80 233
Msa1284020 MtrunA17_Chr8g0355761 71.711 152 42 1 1 151 1 152 4.59e-80 233
Msa1284020 MtrunA17_Chr8g0355641 68.590 156 48 1 1 155 1 156 2.23e-79 232
Msa1284020 MtrunA17_Chr1g0160371 43.791 153 82 3 1 150 1 152 8.53e-40 131
Msa1284020 MtrunA17_Chr1g0160381 39.216 153 89 3 1 150 5 156 8.70e-38 126
Msa1284020 MtrunA17_Chr1g0160391 39.103 156 86 5 1 148 1 155 2.84e-29 105
Msa1284020 MtrunA17_Chr8g0339261 33.333 150 96 4 6 153 8 155 1.72e-26 97.8
Msa1284020 MtrunA17_Chr1g0160801 37.838 148 82 6 7 151 7 147 4.56e-22 86.3
Msa1284020 MtrunA17_Chr1g0160351 41.935 93 51 2 61 150 1 93 8.48e-21 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284020 AT5G28010.1 35.294 153 95 4 3 152 15 166 1.61e-25 95.9
Msa1284020 AT5G28010.2 35.294 153 95 4 3 152 15 166 1.61e-25 95.9
Msa1284020 AT1G70840.1 34.641 153 96 4 3 152 20 171 2.01e-24 93.2
Msa1284020 AT1G70830.5 35.948 153 94 4 3 152 22 173 5.04e-24 92.4
Msa1284020 AT1G70830.3 35.714 154 95 4 3 153 22 174 5.45e-24 92.8
Msa1284020 AT1G70890.1 35.294 153 95 4 3 152 7 158 1.30e-23 90.9
Msa1284020 AT1G70830.2 35.714 154 95 4 3 153 22 174 3.53e-23 92.0
Msa1284020 AT1G70830.1 35.714 154 95 4 3 153 22 174 7.29e-23 92.8
Msa1284020 AT1G70830.1 34.641 153 96 4 3 152 184 335 2.49e-21 88.6
Msa1284020 AT1G70830.4 34.641 153 96 4 3 152 137 288 7.38e-22 89.4
Msa1284020 AT1G70830.4 31.959 97 64 2 59 153 31 127 5.21e-11 59.7
Msa1284020 AT4G23670.1 33.333 153 98 4 1 151 1 151 1.38e-21 85.5
Msa1284020 AT1G70850.2 34.000 150 95 4 3 149 9 157 1.89e-21 87.0
Msa1284020 AT1G70850.3 34.000 150 95 4 3 149 9 157 4.85e-21 87.4
Msa1284020 AT1G70850.3 35.664 143 88 4 13 152 175 316 5.33e-21 87.4
Msa1284020 AT1G70850.1 34.000 150 95 4 3 149 9 157 4.85e-21 87.4
Msa1284020 AT1G70850.1 35.664 143 88 4 13 152 175 316 5.33e-21 87.4
Msa1284020 AT5G28000.1 31.373 153 101 4 3 152 13 164 6.66e-21 84.0
Msa1284020 AT1G14930.1 29.299 157 107 4 1 155 1 155 1.34e-19 80.5
Msa1284020 AT2G01520.1 29.412 153 104 4 1 151 1 151 1.13e-18 77.8
Msa1284020 AT1G70870.1 34.416 154 81 5 1 150 1 138 1.40e-18 77.4
Msa1284020 AT2G01530.1 30.719 153 102 4 1 151 1 151 9.05e-18 75.5
Msa1284020 AT1G14940.1 28.662 157 108 4 1 155 1 155 3.49e-17 73.9
Msa1284020 AT4G23680.1 28.947 152 104 4 1 150 1 150 5.15e-17 73.6
Msa1284020 AT1G70880.1 28.758 153 105 4 3 152 8 159 5.77e-17 73.6
Msa1284020 AT4G14060.1 28.758 153 105 4 1 151 1 151 2.52e-16 71.6
Msa1284020 AT1G35260.1 29.932 147 92 5 9 149 8 149 4.20e-16 71.2
Msa1284020 AT1G24020.1 31.613 155 97 4 1 150 1 151 4.29e-16 71.2
Msa1284020 AT1G24020.2 31.613 155 97 4 1 150 1 151 4.29e-16 71.2
Msa1284020 AT1G14950.1 28.025 157 109 4 1 155 1 155 6.03e-16 70.9
Msa1284020 AT1G23130.1 27.517 149 105 3 3 149 10 157 1.04e-15 70.5
Msa1284020 AT1G23120.1 28.000 150 100 5 3 149 1 145 2.08e-15 69.3
Msa1284020 AT1G23120.2 26.950 141 97 4 10 149 60 195 6.32e-15 69.3
Msa1284020 AT1G30990.1 27.815 151 104 5 1 149 1 148 4.18e-14 65.9
Msa1284020 AT1G14960.1 26.452 155 110 4 1 153 1 153 3.45e-13 63.5
Msa1284020 AT1G35310.1 27.338 139 97 4 13 149 12 148 1.08e-12 62.4
Msa1284020 AT3G26460.1 26.797 153 109 3 1 151 1 152 1.09e-12 62.4
Msa1284020 AT3G26450.1 24.675 154 111 5 1 151 1 152 2.09e-11 58.9

Find 39 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAGAAAGAAACAAATA+AGG 0.211300 8_3:+25921951 None:intergenic
TCATAAAGATATTTGAATTA+TGG 0.240516 8_3:-25919666 Msa1284020:three_prime_UTR
TTATGTGTGATTCAAATAAA+TGG 0.242544 8_3:-25919493 Msa1284020:three_prime_UTR
AATTATGGTTCAATGGGGTT+TGG 0.343641 8_3:-25919651 Msa1284020:three_prime_UTR
CTAGTGTGATGTTTGTATTT+TGG 0.350117 8_3:-25919589 Msa1284020:three_prime_UTR
TGGAGATATTGAAAACTATA+AGG 0.391039 8_3:-25919872 Msa1284020:CDS
TATTTGAATTATGGTTCAAT+GGG 0.403324 8_3:-25919657 Msa1284020:three_prime_UTR
ATGGAAGTTCTGCTGTTAGA+TGG 0.407851 8_3:-25919813 Msa1284020:CDS
GGTAAACTTATTACTGAACT+TGG 0.415223 8_3:-25921885 Msa1284020:CDS
AAAATCACATACAAGCTGTT+TGG 0.429054 8_3:-25919895 Msa1284020:CDS
GAGAAGAAAGAAACAAATAA+GGG 0.430065 8_3:+25921952 None:intergenic
ATATTTGAATTATGGTTCAA+TGG 0.435694 8_3:-25919658 Msa1284020:three_prime_UTR
AATAAGGGATTTATGATATG+AGG 0.444321 8_3:+25921967 None:intergenic
TGATTCAAATAAATGGATAT+TGG 0.465235 8_3:-25919486 Msa1284020:three_prime_UTR
AAACACTGGACTTATGTCAT+AGG 0.470664 8_3:-25921732 Msa1284020:intron
AAAAGCACTAGAGATATTGA+TGG 0.477335 8_3:-25919724 Msa1284020:CDS
AGGTAGTCCATCCATCCATT+TGG 0.478602 8_3:+25919751 None:intergenic
AGCTTCATGAGGGTGAAGAT+TGG 0.493681 8_3:-25921773 Msa1284020:CDS
AGATTGGCATCATGCTGATT+CGG 0.494195 8_3:-25921757 Msa1284020:CDS
TCATCTTGTCAAAGGGGAAA+AGG 0.504175 8_3:-25919701 Msa1284020:CDS
CAAACGAAATATGCATGCTT+AGG 0.504337 8_3:+25919559 None:intergenic
TTGATGGTCATCTTGTCAAA+GGG 0.506740 8_3:-25919708 Msa1284020:CDS
GAGGATATCGATACTCCAAA+TGG 0.506796 8_3:-25919766 Msa1284020:CDS
ATCACATACAAGCTGTTTGG+TGG 0.517987 8_3:-25919892 Msa1284020:CDS
ATCTTCACCCTCATGAAGCT+TGG 0.519812 8_3:+25921776 None:intergenic
GTAAACTTATTACTGAACTT+GGG 0.542207 8_3:-25921884 Msa1284020:CDS
ATTGATGGTCATCTTGTCAA+AGG 0.543582 8_3:-25919709 Msa1284020:CDS
CGATACTCCAAATGGATGGA+TGG 0.544299 8_3:-25919758 Msa1284020:CDS
AGTTTGTAGAACTTGTCAGC+TGG 0.569465 8_3:+25921852 None:intergenic
CGTTTGTATCGAATATATGT+CGG 0.575216 8_3:-25919542 Msa1284020:three_prime_UTR
GAAGTGCTTAACAAGGCTGA+TGG 0.580204 8_3:-25919832 Msa1284020:CDS
ATATCGATACTCCAAATGGA+TGG 0.593139 8_3:-25919762 Msa1284020:CDS
ATGCTGATTCGGTTAAACAC+TGG 0.602503 8_3:-25921746 Msa1284020:CDS
TCATCATACCAAGCTTCATG+AGG 0.610699 8_3:-25921784 Msa1284020:CDS
ATTTGAATTATGGTTCAATG+GGG 0.632915 8_3:-25919656 Msa1284020:three_prime_UTR
CATCATACCAAGCTTCATGA+GGG 0.642119 8_3:-25921783 Msa1284020:CDS
CATCTTAGAAGTGCTTAACA+AGG 0.644958 8_3:-25919839 Msa1284020:CDS
TGATGGTCATCTTGTCAAAG+GGG 0.652198 8_3:-25919707 Msa1284020:CDS
TGACGTAATAACAGATGGCG+AGG 0.668621 8_3:-25919965 Msa1284020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATAATTTTTTTAAT+TGG - chr8_3:25919906-25919925 Msa1284020:CDS 0.0%
!! AAATTATAAATTAAGTCAAT+AGG + chr8_3:25919899-25919918 None:intergenic 10.0%
!! TTAATTAATCAAAAAAATCA+TGG + chr8_3:25920069-25920088 None:intergenic 10.0%
!!! TTATTTTACTAAAAACATTA+AGG + chr8_3:25921065-25921084 None:intergenic 10.0%
!! TTATAATAAGATAATGATAA+AGG + chr8_3:25921332-25921351 None:intergenic 10.0%
!!! TATCTTATTATAATATTTTC+TGG - chr8_3:25921339-25921358 Msa1284020:intron 10.0%
!!! ATTTAGTATCTTTTCAAAAA+TGG - chr8_3:25919488-25919507 Msa1284020:three_prime_UTR 15.0%
!! TATAGTAATAAAAAGAAGAT+TGG - chr8_3:25919785-25919804 Msa1284020:CDS 15.0%
!! GAATAATATATATTATGAGT+TGG + chr8_3:25920107-25920126 None:intergenic 15.0%
!!! ATAATTTTTTTTGGTTACAA+AGG - chr8_3:25920301-25920320 Msa1284020:intron 15.0%
!! TCATAAAGATATTTGAATTA+TGG - chr8_3:25921738-25921757 Msa1284020:CDS 15.0%
!! TCTTCATTATAGAATTCATT+TGG + chr8_3:25919825-25919844 None:intergenic 20.0%
!!! GTATAATTTTTTCTTTACGA+TGG - chr8_3:25920226-25920245 Msa1284020:intron 20.0%
!! TCTTGAGATAATTAAAAAGT+AGG - chr8_3:25920272-25920291 Msa1284020:intron 20.0%
!! CTTGAGATAATTAAAAAGTA+GGG - chr8_3:25920273-25920292 Msa1284020:intron 20.0%
!!! AGGGTTTGTATAATTTTTTT+TGG - chr8_3:25920292-25920311 Msa1284020:intron 20.0%
!! AACACATTATATCATCTTTA+TGG + chr8_3:25920554-25920573 None:intergenic 20.0%
!! GAAAAAGAGATTAAACATTA+AGG - chr8_3:25921137-25921156 Msa1284020:intron 20.0%
!! TTAGTATACTGAAAATTGAA+GGG + chr8_3:25921201-25921220 None:intergenic 20.0%
!! TTTAGTATACTGAAAATTGA+AGG + chr8_3:25921202-25921221 None:intergenic 20.0%
!!! GTAATATATTGTTTTTCATG+CGG - chr8_3:25921292-25921311 Msa1284020:intron 20.0%
!!! CAATAAAATACGTTTTTCAA+AGG + chr8_3:25921399-25921418 None:intergenic 20.0%
!! ATATTTGAATTATGGTTCAA+TGG - chr8_3:25921746-25921765 Msa1284020:CDS 20.0%
!! TATTTGAATTATGGTTCAAT+GGG - chr8_3:25921747-25921766 Msa1284020:CDS 20.0%
!! TTATGTGTGATTCAAATAAA+TGG - chr8_3:25921911-25921930 Msa1284020:exon 20.0%
!! TGATTCAAATAAATGGATAT+TGG - chr8_3:25921918-25921937 Msa1284020:exon 20.0%
! AATAAGGGATTTATGATATG+AGG + chr8_3:25919440-25919459 None:intergenic 25.0%
! GAGAAGAAAGAAACAAATAA+GGG + chr8_3:25919455-25919474 None:intergenic 25.0%
! AGAGAAGAAAGAAACAAATA+AGG + chr8_3:25919456-25919475 None:intergenic 25.0%
! GTAAACTTATTACTGAACTT+GGG - chr8_3:25919520-25919539 Msa1284020:three_prime_UTR 25.0%
! AGTATCATTTGTTTCCTTTA+AGG + chr8_3:25920177-25920196 None:intergenic 25.0%
! TTATCTCAAGACAAAAAATC+TGG + chr8_3:25920263-25920282 None:intergenic 25.0%
!!! TTTTTGGTTACAAAGGAAAA+AGG - chr8_3:25920308-25920327 Msa1284020:intron 25.0%
! GAAAAAGGAAAGAAAAACTA+AGG - chr8_3:25920323-25920342 Msa1284020:intron 25.0%
! ATTAGCATCAGCAATTAAAA+GGG - chr8_3:25920364-25920383 Msa1284020:intron 25.0%
!! ATATCATCTTTATGGTAATG+AGG + chr8_3:25920546-25920565 None:intergenic 25.0%
! AACTATTAGACTACTTAATG+AGG + chr8_3:25920579-25920598 None:intergenic 25.0%
! TATTATACAAACCCTACTTT+GGG + chr8_3:25920892-25920911 None:intergenic 25.0%
! ATATTATACAAACCCTACTT+TGG + chr8_3:25920893-25920912 None:intergenic 25.0%
! GAAAATGCATAATATATGCA+AGG + chr8_3:25921010-25921029 None:intergenic 25.0%
!!! TGAAGGGTTTGATTTTTTTA+AGG + chr8_3:25921185-25921204 None:intergenic 25.0%
! TGGAGATATTGAAAACTATA+AGG - chr8_3:25921532-25921551 Msa1284020:intron 25.0%
! TGATTATGAGAAGAAAAATG+AGG - chr8_3:25921619-25921638 Msa1284020:intron 25.0%
! ATTTGAATTATGGTTCAATG+GGG - chr8_3:25921748-25921767 Msa1284020:CDS 25.0%
GGTAAACTTATTACTGAACT+TGG - chr8_3:25919519-25919538 Msa1284020:three_prime_UTR 30.0%
AAAGCAACAAATGACCTTAA+AGG - chr8_3:25920160-25920179 Msa1284020:intron 30.0%
!! CTTTTAATTGCTGATGCTAA+TGG + chr8_3:25920365-25920384 None:intergenic 30.0%
CATTAGCATCAGCAATTAAA+AGG - chr8_3:25920363-25920382 Msa1284020:intron 30.0%
TTAGCATCAGCAATTAAAAG+GGG - chr8_3:25920365-25920384 Msa1284020:intron 30.0%
AAGTAGTCTAATAGTTTCCA+AGG - chr8_3:25920583-25920602 Msa1284020:intron 30.0%
TCTAATAGTTTCCAAGGAAT+CGG - chr8_3:25920589-25920608 Msa1284020:intron 30.0%
! CGGTAAAACATTGAACTTTT+CGG - chr8_3:25920609-25920628 Msa1284020:intron 30.0%
! TAAAGGTATGTTGTTGTGTT+GGG + chr8_3:25920645-25920664 None:intergenic 30.0%
! TTAAAGGTATGTTGTTGTGT+TGG + chr8_3:25920646-25920665 None:intergenic 30.0%
AAAATCACATACAAGCTGTT+TGG - chr8_3:25921509-25921528 Msa1284020:intron 30.0%
!! AAAAGCACTAGAGATATTGA+TGG - chr8_3:25921680-25921699 Msa1284020:intron 30.0%
! CTAGTGTGATGTTTGTATTT+TGG - chr8_3:25921815-25921834 Msa1284020:CDS 30.0%
CGTTTGTATCGAATATATGT+CGG - chr8_3:25921862-25921881 Msa1284020:CDS 30.0%
! TTTTCAAAAATGGTGCTTGC+TGG - chr8_3:25919498-25919517 Msa1284020:three_prime_UTR 35.0%
AAACACTGGACTTATGTCAT+AGG - chr8_3:25919672-25919691 Msa1284020:exon 35.0%
AAATGATACTCGACCATCTT+TGG - chr8_3:25920187-25920206 Msa1284020:intron 35.0%
! TACCAAGTTGAATCCAAAGA+TGG + chr8_3:25920203-25920222 None:intergenic 35.0%
!!! TCAATGTTTTACCGATTCCT+TGG + chr8_3:25920603-25920622 None:intergenic 35.0%
!! ATCTTGTATGCTGAGTTGAT+GGG + chr8_3:25920674-25920693 None:intergenic 35.0%
! TATCTTGTATGCTGAGTTGA+TGG + chr8_3:25920675-25920694 None:intergenic 35.0%
! GGATTGCTTTGAATGTTGAT+GGG + chr8_3:25920799-25920818 None:intergenic 35.0%
! TGGATTGCTTTGAATGTTGA+TGG + chr8_3:25920800-25920819 None:intergenic 35.0%
AACATTCAAAGCAATCCATC+CGG - chr8_3:25920802-25920821 Msa1284020:intron 35.0%
CTTCCGAAAATGTCTAAAGA+CGG - chr8_3:25920917-25920936 Msa1284020:intron 35.0%
!!! ACGGACCTGAAAGTTTTTTT+TGG - chr8_3:25920936-25920955 Msa1284020:intron 35.0%
!!! GACCTGAAAGTTTTTTTTGG+TGG - chr8_3:25920939-25920958 Msa1284020:intron 35.0%
CACCACCAAAAAAAACTTTC+AGG + chr8_3:25920944-25920963 None:intergenic 35.0%
!!! CTGAAAGTTTTTTTTGGTGG+TGG - chr8_3:25920942-25920961 Msa1284020:intron 35.0%
CATAATATATGCAAGGTCTG+TGG + chr8_3:25921003-25921022 None:intergenic 35.0%
!! CATCTTAGAAGTGCTTAACA+AGG - chr8_3:25921565-25921584 Msa1284020:intron 35.0%
ATATCGATACTCCAAATGGA+TGG - chr8_3:25921642-25921661 Msa1284020:intron 35.0%
! TATCTCTAGTGCTTTTGCTA+AGG + chr8_3:25921676-25921695 None:intergenic 35.0%
! ATTGATGGTCATCTTGTCAA+AGG - chr8_3:25921695-25921714 Msa1284020:intron 35.0%
! TTGATGGTCATCTTGTCAAA+GGG - chr8_3:25921696-25921715 Msa1284020:intron 35.0%
AATTATGGTTCAATGGGGTT+TGG - chr8_3:25921753-25921772 Msa1284020:CDS 35.0%
CAAACGAAATATGCATGCTT+AGG + chr8_3:25921848-25921867 None:intergenic 35.0%
AGTTTGTAGAACTTGTCAGC+TGG + chr8_3:25919555-25919574 None:intergenic 40.0%
TCATCATACCAAGCTTCATG+AGG - chr8_3:25919620-25919639 Msa1284020:three_prime_UTR 40.0%
CATCATACCAAGCTTCATGA+GGG - chr8_3:25919621-25919640 Msa1284020:three_prime_UTR 40.0%
! AGATTGGCATCATGCTGATT+CGG - chr8_3:25919647-25919666 Msa1284020:three_prime_UTR 40.0%
!! ATGCTGATTCGGTTAAACAC+TGG - chr8_3:25919658-25919677 Msa1284020:three_prime_UTR 40.0%
TATCGAAATCATTGCACACG+AGG - chr8_3:25920003-25920022 Msa1284020:intron 40.0%
GACCATCTTTGGATTCAACT+TGG - chr8_3:25920198-25920217 Msa1284020:intron 40.0%
TTGCTGATGCTAATGGTACT+CGG + chr8_3:25920358-25920377 None:intergenic 40.0%
ATGTTGTTGTGTTGGGAAGA+GGG + chr8_3:25920638-25920657 None:intergenic 40.0%
TATGTTGTTGTGTTGGGAAG+AGG + chr8_3:25920639-25920658 None:intergenic 40.0%
!! GAGTTGATGGGTTTGCTTAA+AGG + chr8_3:25920662-25920681 None:intergenic 40.0%
! ATGAAGGTCGATTCATGCTT+GGG + chr8_3:25920724-25920743 None:intergenic 40.0%
! GGCATCATCTGAAATCATGA+AGG + chr8_3:25920740-25920759 None:intergenic 40.0%
!! ACAAACCCTACTTTGGGATT+GGG + chr8_3:25920886-25920905 None:intergenic 40.0%
!! TACAAACCCTACTTTGGGAT+TGG + chr8_3:25920887-25920906 None:intergenic 40.0%
! CGTCTTTAGACATTTTCGGA+AGG + chr8_3:25920919-25920938 None:intergenic 40.0%
! GGTCCGTCTTTAGACATTTT+CGG + chr8_3:25920923-25920942 None:intergenic 40.0%
!!! AGTTTTTTTTGGTGGTGGTC+AGG - chr8_3:25920947-25920966 Msa1284020:intron 40.0%
!!! GTTTTTTTTGGTGGTGGTCA+GGG - chr8_3:25920948-25920967 Msa1284020:intron 40.0%
TGAGCATAACTCAGTTGGTT+TGG + chr8_3:25921032-25921051 None:intergenic 40.0%
ATCACATACAAGCTGTTTGG+TGG - chr8_3:25921512-25921531 Msa1284020:intron 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG - chr8_3:25921591-25921610 Msa1284020:intron 40.0%
GAGGATATCGATACTCCAAA+TGG - chr8_3:25921638-25921657 Msa1284020:intron 40.0%
TGATGGTCATCTTGTCAAAG+GGG - chr8_3:25921697-25921716 Msa1284020:intron 40.0%
TCATCTTGTCAAAGGGGAAA+AGG - chr8_3:25921703-25921722 Msa1284020:intron 40.0%
!!! TCAATGGGGTTTGGCTTTTA+TGG - chr8_3:25921762-25921781 Msa1284020:CDS 40.0%
ATCTTCACCCTCATGAAGCT+TGG + chr8_3:25919631-25919650 None:intergenic 45.0%
AGCTTCATGAGGGTGAAGAT+TGG - chr8_3:25919631-25919650 Msa1284020:three_prime_UTR 45.0%
AAAAGGGGCCCTAAATCTGT+AGG - chr8_3:25920380-25920399 Msa1284020:intron 45.0%
AAAGGGGCCCTAAATCTGTA+GGG - chr8_3:25920381-25920400 Msa1284020:intron 45.0%
GAAACCCCCCTACAGATTTA+GGG + chr8_3:25920391-25920410 None:intergenic 45.0%
AGAAACCCCCCTACAGATTT+AGG + chr8_3:25920392-25920411 None:intergenic 45.0%
ATATCTCACATCTACCGCGA+AGG + chr8_3:25920479-25920498 None:intergenic 45.0%
GTAAGCTGCTGCAACGTAAT+TGG + chr8_3:25920511-25920530 None:intergenic 45.0%
TGTTGTTGTGTTGGGAAGAG+GGG + chr8_3:25920637-25920656 None:intergenic 45.0%
! CATGCTTGGGTTTAGTGGAT+CGG + chr8_3:25920711-25920730 None:intergenic 45.0%
CGATTCATGCTTGGGTTTAG+TGG + chr8_3:25920716-25920735 None:intergenic 45.0%
! CATGAAGGTCGATTCATGCT+TGG + chr8_3:25920725-25920744 None:intergenic 45.0%
!! AAACCCTACTTTGGGATTGG+GGG + chr8_3:25920884-25920903 None:intergenic 45.0%
!! CAAACCCTACTTTGGGATTG+GGG + chr8_3:25920885-25920904 None:intergenic 45.0%
GCCTCTGACGTAATAACAGA+TGG - chr8_3:25921434-25921453 Msa1284020:intron 45.0%
GCCATCTGTTATTACGTCAG+AGG + chr8_3:25921438-25921457 None:intergenic 45.0%
TGACGTAATAACAGATGGCG+AGG - chr8_3:25921439-25921458 Msa1284020:intron 45.0%
! GAAGTGCTTAACAAGGCTGA+TGG - chr8_3:25921572-25921591 Msa1284020:intron 45.0%
CGATACTCCAAATGGATGGA+TGG - chr8_3:25921646-25921665 Msa1284020:intron 45.0%
AGGTAGTCCATCCATCCATT+TGG + chr8_3:25921656-25921675 None:intergenic 45.0%
!! TATATTATTCAAAAAAAAAA+AGG - chr8_3:25920117-25920136 Msa1284020:intron 5.0%
TTGCACACGAGGTGAAGTAC+TGG - chr8_3:25920014-25920033 Msa1284020:intron 50.0%
AAGGGGCCCTAAATCTGTAG+GGG - chr8_3:25920382-25920401 Msa1284020:intron 50.0%
AAGGTAACTCTTGTGCGGAC+TGG + chr8_3:25920460-25920479 None:intergenic 50.0%
! GGTTTAGTGGATCGGTTGGT+TGG + chr8_3:25920703-25920722 None:intergenic 50.0%
! CTTGGGTTTAGTGGATCGGT+TGG + chr8_3:25920707-25920726 None:intergenic 50.0%
AAAGCAATCCATCCGGTGTC+TGG - chr8_3:25920809-25920828 Msa1284020:intron 50.0%
TGTTGGAAGAGACCAGACAC+CGG + chr8_3:25920824-25920843 None:intergenic 50.0%
CCAACTGAGTTATGCTCACG+CGG - chr8_3:25921034-25921053 Msa1284020:intron 50.0%
AGGGGCCCTAAATCTGTAGG+GGG - chr8_3:25920383-25920402 Msa1284020:intron 55.0%
!! TGCGGACTGGTTTGCGAAGA+CGG + chr8_3:25920447-25920466 None:intergenic 55.0%
CCGCGAAGGTAACTCTTGTG+CGG + chr8_3:25920465-25920484 None:intergenic 55.0%
CCGCACAAGAGTTACCTTCG+CGG - chr8_3:25920462-25920481 Msa1284020:intron 55.0%
GCTGCTGCAACGTAATTGGC+AGG + chr8_3:25920507-25920526 None:intergenic 55.0%
TCTCACTAACCCAGGTGCAG+CGG + chr8_3:25920771-25920790 None:intergenic 55.0%
!! TACTTTGGGATTGGGGGCAC+AGG + chr8_3:25920878-25920897 None:intergenic 55.0%
TGTGCCCCCAATCCCAAAGT+AGG - chr8_3:25920877-25920896 Msa1284020:intron 55.0%
GTGCCCCCAATCCCAAAGTA+GGG - chr8_3:25920878-25920897 Msa1284020:intron 55.0%
CCGCGTGAGCATAACTCAGT+TGG + chr8_3:25921037-25921056 None:intergenic 55.0%
CTGAGTTATGCTCACGCGGA+CGG - chr8_3:25921038-25921057 Msa1284020:intron 55.0%
GGGGCCCTAAATCTGTAGGG+GGG - chr8_3:25920384-25920403 Msa1284020:intron 60.0%
!! GCGGACTGGTTTGCGAAGAC+GGG + chr8_3:25920446-25920465 None:intergenic 60.0%
TCACTAACCCAGGTGCAGCG+GGG + chr8_3:25920769-25920788 None:intergenic 60.0%
CTCACTAACCCAGGTGCAGC+GGG + chr8_3:25920770-25920789 None:intergenic 60.0%
GGAAGAGACCAGACACCGGA+TGG + chr8_3:25920820-25920839 None:intergenic 60.0%
GGGTTGCGCGTGAGGTTTGT+TGG + chr8_3:25920841-25920860 None:intergenic 60.0%
CACAGGTGCTCGTGGAAGTG+GGG + chr8_3:25920861-25920880 None:intergenic 60.0%
GCACAGGTGCTCGTGGAAGT+GGG + chr8_3:25920862-25920881 None:intergenic 60.0%
TCAGGGTTCGAACCCCAGAG+TGG - chr8_3:25920965-25920984 Msa1284020:intron 60.0%
TTCGAACCCCAGAGTGGCCA+GGG - chr8_3:25920971-25920990 Msa1284020:intron 60.0%
AAGGTCTGTGGTTCGAGCCC+TGG + chr8_3:25920991-25921010 None:intergenic 60.0%
CTCCAAACCCCGCTGCACCT+GGG - chr8_3:25920759-25920778 Msa1284020:intron 65.0%
AACCCAGGTGCAGCGGGGTT+TGG + chr8_3:25920764-25920783 None:intergenic 65.0%
!! GGGAGCGCTCTCACTAACCC+AGG + chr8_3:25920779-25920798 None:intergenic 65.0%
TGGAAGTGGGGTTGCGCGTG+AGG + chr8_3:25920849-25920868 None:intergenic 65.0%
GGCACAGGTGCTCGTGGAAG+TGG + chr8_3:25920863-25920882 None:intergenic 65.0%
! ATTGGGGGCACAGGTGCTCG+TGG + chr8_3:25920869-25920888 None:intergenic 65.0%
GTTCGAACCCCAGAGTGGCC+AGG - chr8_3:25920970-25920989 Msa1284020:intron 65.0%
TTCGAGCCCTGGCCACTCTG+GGG + chr8_3:25920980-25920999 None:intergenic 65.0%
GTTCGAGCCCTGGCCACTCT+GGG + chr8_3:25920981-25921000 None:intergenic 65.0%
CCAGGTGCAGCGGGGTTTGG+AGG + chr8_3:25920761-25920780 None:intergenic 70.0%
CCTCCAAACCCCGCTGCACC+TGG - chr8_3:25920758-25920777 Msa1284020:intron 70.0%
GGTTCGAGCCCTGGCCACTC+TGG + chr8_3:25920982-25921001 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 25919420 25922006 25919420 ID=Msa1284020;Name=Msa1284020
chr8_3 mRNA 25919420 25922006 25919420 ID=Msa1284020-mRNA-1;Parent=Msa1284020;Name=Msa1284020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=87|1|1|1|1|1|2|270|156
chr8_3 exon 25919420 25919973 25919420 ID=Msa1284020-mRNA-1:exon:9074;Parent=Msa1284020-mRNA-1
chr8_3 exon 25921733 25922006 25921733 ID=Msa1284020-mRNA-1:exon:9073;Parent=Msa1284020-mRNA-1
chr8_3 five_prime_UTR 25921920 25922006 25921920 ID=Msa1284020-mRNA-1:five_prime_utr;Parent=Msa1284020-mRNA-1
chr8_3 CDS 25921733 25921919 25921733 ID=Msa1284020-mRNA-1:cds;Parent=Msa1284020-mRNA-1
chr8_3 CDS 25919690 25919973 25919690 ID=Msa1284020-mRNA-1:cds;Parent=Msa1284020-mRNA-1
chr8_3 three_prime_UTR 25919420 25919689 25919420 ID=Msa1284020-mRNA-1:three_prime_utr;Parent=Msa1284020-mRNA-1
Gene Sequence

>Msa1284020

ATGGTGCTTGCTGGTAAACTTATTACTGAACTTGGGATAAAAACACCAGCTGACAAGTTCTACAAACTATTTGCATCAGAACTTCACGAAGTGCAAAATGTTTGTGAAAGAGTTCATCATACCAAGCTTCATGAGGGTGAAGATTGGCATCATGCTGATTCGGTTAAACACTGGACTTATGTCATAGATGGCGAGGTACACACATGCAATGAGAGTGTTGAAGAAGTTGATGATCAGAACAAAAAAATCACATACAAGCTGTTTGGTGGAGATATTGAAAACTATAAGGTATTTAAGCTCATCTTAGAAGTGCTTAACAAGGCTGATGGAAGTTCTGCTGTTAGATGGACTATTGATTATGAGAAGAAAAATGAGGATATCGATACTCCAAATGGATGGATGGACTACCTTAGCAAAAGCACTAGAGATATTGATGGTCATCTTGTCAAAGGGGAAAAGGTAGCTCTATAA

Protein sequence

>Msa1284020

MVLAGKLITELGIKTPADKFYKLFASELHEVQNVCERVHHTKLHEGEDWHHADSVKHWTYVIDGEVHTCNESVEEVDDQNKKITYKLFGGDIENYKVFKLILEVLNKADGSSAVRWTIDYEKKNEDIDTPNGWMDYLSKSTRDIDGHLVKGEKVAL*