Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395390 | XP_003626394.1 | 95.023 | 442 | 14 | 4 | 1 | 435 | 1 | 441 | 0.0 | 850 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395390 | sp|F4K5T4|STKLU_ARATH | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.50e-86 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395390 | G7L0U1 | 95.023 | 442 | 14 | 4 | 1 | 435 | 1 | 441 | 0.0 | 850 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1395390 | TF | GeBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1394370 | Msa1395390 | 0.801435 | 9.015523e-49 | -8.615850e-47 |
| Msa1395390 | Msa1408580 | 0.819697 | 1.013414e-52 | -8.615850e-47 |
| Msa0706450 | Msa1395390 | -0.807984 | 3.868937e-50 | -8.615850e-47 |
| Msa1331980 | Msa1395390 | 0.802498 | 5.451943e-49 | -8.615850e-47 |
| Msa0378910 | Msa1395390 | 0.816608 | 5.065954e-52 | -8.615850e-47 |
| Msa0474860 | Msa1395390 | 0.808088 | 3.677974e-50 | -8.615850e-47 |
| Msa0481770 | Msa1395390 | 0.800303 | 1.535365e-48 | -8.615850e-47 |
| Msa1172980 | Msa1395390 | 0.949722 | 7.143210e-108 | -8.615850e-47 |
| Msa1215030 | Msa1395390 | 0.818977 | 1.478920e-52 | -8.615850e-47 |
| Msa0503220 | Msa1395390 | 0.800736 | 1.252886e-48 | -8.615850e-47 |
| Msa0564090 | Msa1395390 | 0.815729 | 7.963763e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395390 | MtrunA17_Chr7g0273821 | 95.023 | 442 | 14 | 4 | 1 | 435 | 1 | 441 | 0.0 | 850 |
| Msa1395390 | MtrunA17_Chr1g0191021 | 43.377 | 385 | 140 | 13 | 54 | 427 | 53 | 370 | 3.79e-76 | 242 |
| Msa1395390 | MtrunA17_Chr1g0191011 | 50.000 | 106 | 45 | 3 | 101 | 201 | 127 | 229 | 7.20e-25 | 105 |
| Msa1395390 | MtrunA17_Chr1g0191011 | 39.815 | 108 | 46 | 4 | 323 | 428 | 282 | 372 | 4.09e-13 | 70.5 |
| Msa1395390 | MtrunA17_Chr3g0113131 | 33.929 | 112 | 66 | 2 | 106 | 217 | 153 | 256 | 2.17e-14 | 74.3 |
| Msa1395390 | MtrunA17_Chr2g0280431 | 34.615 | 104 | 58 | 2 | 100 | 203 | 198 | 291 | 6.78e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395390 | AT5G28040.2 | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.61e-87 | 271 |
| Msa1395390 | AT5G28040.1 | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.61e-87 | 271 |
| Msa1395390 | AT3G04930.2 | 63.030 | 165 | 50 | 5 | 45 | 207 | 86 | 241 | 6.41e-60 | 201 |
| Msa1395390 | AT3G04930.1 | 63.030 | 165 | 50 | 5 | 45 | 207 | 86 | 241 | 4.50e-59 | 200 |
| Msa1395390 | AT3G04930.1 | 37.584 | 149 | 60 | 6 | 305 | 429 | 313 | 452 | 1.10e-15 | 79.3 |
| Msa1395390 | AT4G00390.1 | 36.420 | 162 | 80 | 5 | 40 | 200 | 108 | 247 | 1.38e-19 | 90.1 |
| Msa1395390 | AT1G61730.1 | 36.486 | 148 | 78 | 4 | 53 | 200 | 114 | 245 | 1.49e-19 | 90.1 |
| Msa1395390 | AT4G01260.1 | 36.181 | 199 | 102 | 8 | 39 | 215 | 36 | 231 | 4.28e-19 | 88.2 |
| Msa1395390 | AT1G11510.1 | 39.535 | 129 | 71 | 3 | 78 | 202 | 106 | 231 | 9.26e-19 | 87.8 |
| Msa1395390 | AT1G11510.2 | 40.777 | 103 | 58 | 1 | 100 | 202 | 103 | 202 | 1.20e-18 | 87.0 |
| Msa1395390 | AT4G25210.1 | 36.641 | 131 | 69 | 4 | 84 | 201 | 110 | 239 | 2.91e-17 | 83.6 |
| Msa1395390 | AT1G44810.1 | 36.066 | 122 | 68 | 2 | 91 | 208 | 107 | 222 | 1.04e-15 | 77.8 |
| Msa1395390 | AT2G01370.1 | 38.614 | 101 | 57 | 3 | 101 | 199 | 74 | 171 | 1.42e-14 | 73.9 |
| Msa1395390 | AT4G00610.1 | 32.520 | 123 | 71 | 3 | 80 | 199 | 120 | 233 | 5.31e-13 | 70.1 |
| Msa1395390 | AT2G25650.1 | 33.684 | 95 | 63 | 0 | 105 | 199 | 64 | 158 | 2.19e-11 | 65.9 |
| Msa1395390 | AT5G14280.1 | 30.526 | 95 | 66 | 0 | 108 | 202 | 63 | 157 | 7.59e-11 | 63.5 |
Find 89 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGGAAGCAACAGATTT+TGG | 0.165742 | tig0021940:-24584 | Msa1395390:CDS |
| CCGTTTCAGACGATGAATTT+AGG | 0.215452 | tig0021940:-24637 | Msa1395390:CDS |
| GAGTTGTTTATCGCCGTTTA+AGG | 0.229902 | tig0021940:-24728 | Msa1395390:CDS |
| TCCGTCACCGTCGCCGTTCC+CGG | 0.291496 | tig0021940:-25615 | Msa1395390:CDS |
| CAGACGATGAATTTAGGTTT+TGG | 0.306437 | tig0021940:-24631 | Msa1395390:CDS |
| GTAGCATAAGCATTAGGATT+AGG | 0.338681 | tig0021940:+24898 | None:intergenic |
| TTGATCCAAACGTTGACGTT+TGG | 0.362708 | tig0021940:+25524 | None:intergenic |
| GCAGTTGTAGCATAAGCATT+AGG | 0.365701 | tig0021940:+24892 | None:intergenic |
| ACGGGAGTGAAATTGAGGTT+AGG | 0.366561 | tig0021940:+25102 | None:intergenic |
| GCAGCATTAGTATTAACATT+AGG | 0.376257 | tig0021940:+24832 | None:intergenic |
| CGATTCCAAACGTCAACGTT+TGG | 0.378466 | tig0021940:-25529 | Msa1395390:CDS |
| AGTAATAATTGTAGTACTGC+TGG | 0.385802 | tig0021940:-24787 | Msa1395390:CDS |
| TTGTGATTAGGATAGGGATT+AGG | 0.391090 | tig0021940:+24934 | None:intergenic |
| CAAACGTTGACGTTTGGAAT+CGG | 0.393384 | tig0021940:+25530 | None:intergenic |
| GGAAGTGTATTCAAAGAGAT+TGG | 0.394682 | tig0021940:-24557 | Msa1395390:CDS |
| ACATTAGGAGTAGTAATTGT+AGG | 0.395915 | tig0021940:+24847 | None:intergenic |
| CGGGAGTGAAATTGAGGTTA+GGG | 0.396355 | tig0021940:+25103 | None:intergenic |
| TTGAAATCTCTCGCAAGATC+TGG | 0.402112 | tig0021940:-25197 | Msa1395390:CDS |
| TGGAGGTCTGAGAGCTCCTC+CGG | 0.404026 | tig0021940:+25596 | None:intergenic |
| GCAATGGGAGGAGGACTGTT+TGG | 0.407072 | tig0021940:-24691 | Msa1395390:CDS |
| ATCGCCGTTTAAGGAATTGA+TGG | 0.410493 | tig0021940:-24719 | Msa1395390:CDS |
| TTGTGATTGTGATTGTGATT+AGG | 0.420049 | tig0021940:+24922 | None:intergenic |
| GTAATTGTAGGTGTTATTGC+AGG | 0.422477 | tig0021940:+24859 | None:intergenic |
| GTTGCGGTTGGTGTTAGAAT+TGG | 0.424821 | tig0021940:+25576 | None:intergenic |
| CCAGCCATCAATTCCTTAAA+CGG | 0.436526 | tig0021940:+24715 | None:intergenic |
| GAGAATTGGTGGATGAGAAA+TGG | 0.440436 | tig0021940:-24603 | Msa1395390:CDS |
| TTGAGGTTAGGGTTAGGACT+TGG | 0.440851 | tig0021940:+25114 | None:intergenic |
| GATGTCTTCTTCAGCGAAAA+CGG | 0.442070 | tig0021940:+25749 | None:intergenic |
| GTGAAATTGAGGTTAGGGTT+AGG | 0.470406 | tig0021940:+25108 | None:intergenic |
| GATGAATTGCGTTCAGTTGG+TGG | 0.477018 | tig0021940:-24502 | Msa1395390:CDS |
| GAATTGATGGCTGGTGCAAT+GGG | 0.477602 | tig0021940:-24706 | Msa1395390:CDS |
| GATAGGGATTAGGATTATTG+AGG | 0.478564 | tig0021940:+24944 | None:intergenic |
| CAACCACGCGGAAGCGTTCA+CGG | 0.479940 | tig0021940:-25056 | Msa1395390:CDS |
| GTCGTGTTGCTGTGAAGCCA+TGG | 0.481747 | tig0021940:+25773 | None:intergenic |
| GCGGTTGGTGTTAGAATTGG+AGG | 0.483246 | tig0021940:+25579 | None:intergenic |
| GTTGAAATCGAGTTGAAGCT+TGG | 0.492100 | tig0021940:+25335 | None:intergenic |
| CCTAAATTCATCGTCTGAAA+CGG | 0.495889 | tig0021940:+24637 | None:intergenic |
| GGCGAAGATGATCGTGGTTG+CGG | 0.497664 | tig0021940:+25560 | None:intergenic |
| CTCAAAGCTTCTGATAGAAA+CGG | 0.498357 | tig0021940:+25026 | None:intergenic |
| TCCGGGAACGGCGACGGTGA+CGG | 0.500148 | tig0021940:+25614 | None:intergenic |
| GAATTACGGGAGTGAAATTG+AGG | 0.501359 | tig0021940:+25097 | None:intergenic |
| AGCTCCTCCGGGAACGGCGA+CGG | 0.517162 | tig0021940:+25608 | None:intergenic |
| TCAACGTTTGGATCAAATTG+AGG | 0.517701 | tig0021940:-25517 | Msa1395390:CDS |
| TGCGGATCTTCTCAACGAGC+TGG | 0.526099 | tig0021940:+25307 | None:intergenic |
| GGCGACGGTGACGGAGGGAA+CGG | 0.527528 | tig0021940:+25623 | None:intergenic |
| TCGTGTTGCTGTGAAGCCAT+GGG | 0.528982 | tig0021940:+25774 | None:intergenic |
| ATAGTAACATCACCGGCGAT+TGG | 0.530842 | tig0021940:+25162 | None:intergenic |
| ACTGCTGGGAATGGTGTAGC+TGG | 0.532760 | tig0021940:-24772 | Msa1395390:CDS |
| CCGTTTAAGGAATTGATGGC+TGG | 0.533833 | tig0021940:-24715 | Msa1395390:CDS |
| ATGGCTGGTGCAATGGGAGG+AGG | 0.535572 | tig0021940:-24700 | Msa1395390:CDS |
| GAGCAAAATGAGCTCTGGTA+AGG | 0.538676 | tig0021940:-25256 | Msa1395390:CDS |
| CGTGAATCTTCAACCATAGG+TGG | 0.540544 | tig0021940:+25486 | None:intergenic |
| CTTGATGAATTGCGTTCAGT+TGG | 0.542946 | tig0021940:-24505 | Msa1395390:CDS |
| ACGTTTGGAATCGGTTGAGT+CGG | 0.547440 | tig0021940:+25539 | None:intergenic |
| GTTGTGAGCAAAATGAGCTC+TGG | 0.549041 | tig0021940:-25261 | Msa1395390:CDS |
| ATGGACCGACGAAGACGAGA+TGG | 0.549218 | tig0021940:-25445 | Msa1395390:CDS |
| GGAATTGATGGCTGGTGCAA+TGG | 0.550630 | tig0021940:-24707 | Msa1395390:CDS |
| GTAATAATTGTAGTACTGCT+GGG | 0.552619 | tig0021940:-24786 | Msa1395390:CDS |
| ATTGTGATTGTGATTAGGAT+AGG | 0.560354 | tig0021940:+24927 | None:intergenic |
| TTGCGTGAATCTTCAACCAT+AGG | 0.563271 | tig0021940:+25483 | None:intergenic |
| CTTGCGAGAGATTTCAAACG+TGG | 0.563273 | tig0021940:+25203 | None:intergenic |
| GACGAGATGGAACTGTTACA+AGG | 0.568392 | tig0021940:-25432 | Msa1395390:CDS |
| TTGTGATTGTGATTAGGATA+GGG | 0.568508 | tig0021940:+24928 | None:intergenic |
| TCTGAGAGCTCCTCCGGGAA+CGG | 0.571875 | tig0021940:+25602 | None:intergenic |
| AGCTCGTTGAGAAGATCCGC+AGG | 0.575154 | tig0021940:-25305 | Msa1395390:CDS |
| GGAACGGCGACGGTGACGGA+GGG | 0.575721 | tig0021940:+25618 | None:intergenic |
| CGAATACGAAGAAGAAGATG+AGG | 0.576730 | tig0021940:-25703 | Msa1395390:CDS |
| AACAACGTAGCGCCAATCGC+CGG | 0.577047 | tig0021940:-25174 | Msa1395390:CDS |
| GGAGGTCTGAGAGCTCCTCC+GGG | 0.580886 | tig0021940:+25597 | None:intergenic |
| GGAGGACTGTTTGGATCGCG+TGG | 0.584367 | tig0021940:-24682 | Msa1395390:CDS |
| TGTATTTCTTCTTCAACCTG+CGG | 0.587483 | tig0021940:+25289 | None:intergenic |
| AATTGGTGGATGAGAAATGG+AGG | 0.596698 | tig0021940:-24600 | Msa1395390:CDS |
| AAGATGATCGTGGTTGCGGT+TGG | 0.598224 | tig0021940:+25564 | None:intergenic |
| GGGAACGGCGACGGTGACGG+AGG | 0.599600 | tig0021940:+25617 | None:intergenic |
| CAGTTCCATCTCGTCTTCGT+CGG | 0.601304 | tig0021940:+25440 | None:intergenic |
| AATTGTAGTACTGCTGGGAA+TGG | 0.606803 | tig0021940:-24781 | Msa1395390:CDS |
| TTCATCGTCTGAAACGGTAG+CGG | 0.613739 | tig0021940:+24643 | None:intergenic |
| GGAACGGAGATAGAAGCAGA+TGG | 0.620359 | tig0021940:+25639 | None:intergenic |
| GTCGTCTATAGTAACATCAC+CGG | 0.620625 | tig0021940:+25155 | None:intergenic |
| TTGATGGCTGGTGCAATGGG+AGG | 0.622136 | tig0021940:-24703 | Msa1395390:CDS |
| CTCGATTACACAACACAGAG+AGG | 0.638279 | tig0021940:-25405 | Msa1395390:CDS |
| TCCCGTAATTCTCAAAAGCG+AGG | 0.641190 | tig0021940:-25085 | Msa1395390:CDS |
| GATTTGATCGTAGAATTGAG+CGG | 0.644134 | tig0021940:+25362 | None:intergenic |
| CTTCTGATAGAAACGGATCG+AGG | 0.677211 | tig0021940:+25033 | None:intergenic |
| TGAGTCGGCGAAGATGATCG+TGG | 0.687674 | tig0021940:+25554 | None:intergenic |
| GAAGCGTGAATCAAATGATG+CGG | 0.695426 | tig0021940:-25004 | Msa1395390:CDS |
| GTCACCGTCGCCGTTCCCGG+AGG | 0.698715 | tig0021940:-25612 | Msa1395390:CDS |
| GTGTGATTGAAGAGACAGTG+AGG | 0.762218 | tig0021940:-24750 | Msa1395390:CDS |
| GCGAGGTAAATTCAACCACG+CGG | 0.795949 | tig0021940:-25068 | Msa1395390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTGTGATTGTGATTAGGATA+GGG | + | tig0021940:25332-25351 | None:intergenic | 30.0% | |
| ATTGTGATTGTGATTAGGAT+AGG | + | tig0021940:25333-25352 | None:intergenic | 30.0% | |
| TTGTGATTGTGATTGTGATT+AGG | + | tig0021940:25338-25357 | None:intergenic | 30.0% | |
| ACATTAGGAGTAGTAATTGT+AGG | + | tig0021940:25413-25432 | None:intergenic | 30.0% | |
| GCAGCATTAGTATTAACATT+AGG | + | tig0021940:25428-25447 | None:intergenic | 30.0% | |
| AGTAATAATTGTAGTACTGC+TGG | - | tig0021940:25470-25489 | Msa1395390:CDS | 30.0% | |
| GTAATAATTGTAGTACTGCT+GGG | - | tig0021940:25471-25490 | Msa1395390:CDS | 30.0% | |
| TTGTGATTGTGATTAGGATA+GGG | + | tig0021940:25332-25351 | None:intergenic | 30.0% | |
| ATTGTGATTGTGATTAGGAT+AGG | + | tig0021940:25333-25352 | None:intergenic | 30.0% | |
| TTGTGATTGTGATTGTGATT+AGG | + | tig0021940:25338-25357 | None:intergenic | 30.0% | |
| ACATTAGGAGTAGTAATTGT+AGG | + | tig0021940:25413-25432 | None:intergenic | 30.0% | |
| GCAGCATTAGTATTAACATT+AGG | + | tig0021940:25428-25447 | None:intergenic | 30.0% | |
| AGTAATAATTGTAGTACTGC+TGG | - | tig0021940:25470-25489 | Msa1395390:CDS | 30.0% | |
| GTAATAATTGTAGTACTGCT+GGG | - | tig0021940:25471-25490 | Msa1395390:CDS | 30.0% | |
| TCAACGTTTGGATCAAATTG+AGG | - | tig0021940:24740-24759 | Msa1395390:CDS | 35.0% | |
| GATTTGATCGTAGAATTGAG+CGG | + | tig0021940:24898-24917 | None:intergenic | 35.0% | |
| TGTATTTCTTCTTCAACCTG+CGG | + | tig0021940:24971-24990 | None:intergenic | 35.0% | |
| !! | TACCTCGCTTTTGAGAATTA+CGG | + | tig0021940:25177-25196 | None:intergenic | 35.0% |
| CTCAAAGCTTCTGATAGAAA+CGG | + | tig0021940:25234-25253 | None:intergenic | 35.0% | |
| GATAGGGATTAGGATTATTG+AGG | + | tig0021940:25316-25335 | None:intergenic | 35.0% | |
| TTGTGATTAGGATAGGGATT+AGG | + | tig0021940:25326-25345 | None:intergenic | 35.0% | |
| GTAGCATAAGCATTAGGATT+AGG | + | tig0021940:25362-25381 | None:intergenic | 35.0% | |
| !! | GTAATTGTAGGTGTTATTGC+AGG | + | tig0021940:25401-25420 | None:intergenic | 35.0% |
| CCTAAATTCATCGTCTGAAA+CGG | + | tig0021940:25623-25642 | None:intergenic | 35.0% | |
| !! | CAGACGATGAATTTAGGTTT+TGG | - | tig0021940:25626-25645 | Msa1395390:CDS | 35.0% |
| !! | ACGATGAATTTAGGTTTTGG+AGG | - | tig0021940:25629-25648 | Msa1395390:CDS | 35.0% |
| !!! | ATGAATTTAGGTTTTGGAGG+TGG | - | tig0021940:25632-25651 | Msa1395390:CDS | 35.0% |
| !!! | GAAGCAACAGATTTTGGAAT+TGG | - | tig0021940:25679-25698 | Msa1395390:CDS | 35.0% |
| ! | GGAAGTGTATTCAAAGAGAT+TGG | - | tig0021940:25700-25719 | Msa1395390:CDS | 35.0% |
| TCAACGTTTGGATCAAATTG+AGG | - | tig0021940:24740-24759 | Msa1395390:CDS | 35.0% | |
| GATTTGATCGTAGAATTGAG+CGG | + | tig0021940:24898-24917 | None:intergenic | 35.0% | |
| TGTATTTCTTCTTCAACCTG+CGG | + | tig0021940:24971-24990 | None:intergenic | 35.0% | |
| !! | TACCTCGCTTTTGAGAATTA+CGG | + | tig0021940:25177-25196 | None:intergenic | 35.0% |
| CTCAAAGCTTCTGATAGAAA+CGG | + | tig0021940:25234-25253 | None:intergenic | 35.0% | |
| GATAGGGATTAGGATTATTG+AGG | + | tig0021940:25316-25335 | None:intergenic | 35.0% | |
| TTGTGATTAGGATAGGGATT+AGG | + | tig0021940:25326-25345 | None:intergenic | 35.0% | |
| GTAGCATAAGCATTAGGATT+AGG | + | tig0021940:25362-25381 | None:intergenic | 35.0% | |
| !! | GTAATTGTAGGTGTTATTGC+AGG | + | tig0021940:25401-25420 | None:intergenic | 35.0% |
| CCTAAATTCATCGTCTGAAA+CGG | + | tig0021940:25623-25642 | None:intergenic | 35.0% | |
| !! | CAGACGATGAATTTAGGTTT+TGG | - | tig0021940:25626-25645 | Msa1395390:CDS | 35.0% |
| !! | ACGATGAATTTAGGTTTTGG+AGG | - | tig0021940:25629-25648 | Msa1395390:CDS | 35.0% |
| !!! | ATGAATTTAGGTTTTGGAGG+TGG | - | tig0021940:25632-25651 | Msa1395390:CDS | 35.0% |
| !!! | GAAGCAACAGATTTTGGAAT+TGG | - | tig0021940:25679-25698 | Msa1395390:CDS | 35.0% |
| ! | GGAAGTGTATTCAAAGAGAT+TGG | - | tig0021940:25700-25719 | Msa1395390:CDS | 35.0% |
| GATGTCTTCTTCAGCGAAAA+CGG | + | tig0021940:24511-24530 | None:intergenic | 40.0% | |
| CGAATACGAAGAAGAAGATG+AGG | - | tig0021940:24554-24573 | Msa1395390:CDS | 40.0% | |
| ! | CAAACGTTGACGTTTGGAAT+CGG | + | tig0021940:24730-24749 | None:intergenic | 40.0% |
| TTGATCCAAACGTTGACGTT+TGG | + | tig0021940:24736-24755 | None:intergenic | 40.0% | |
| TGAGGAGAAAAAACCACCTA+TGG | - | tig0021940:24758-24777 | Msa1395390:CDS | 40.0% | |
| TTGCGTGAATCTTCAACCAT+AGG | + | tig0021940:24777-24796 | None:intergenic | 40.0% | |
| !!! | GCAAGCTTTTTCAACGTCTA+TGG | - | tig0021940:24793-24812 | Msa1395390:CDS | 40.0% |
| !! | GTTGAAATCGAGTTGAAGCT+TGG | + | tig0021940:24925-24944 | None:intergenic | 40.0% |
| TTGAAATCTCTCGCAAGATC+TGG | - | tig0021940:25060-25079 | Msa1395390:CDS | 40.0% | |
| GTCGTCTATAGTAACATCAC+CGG | + | tig0021940:25105-25124 | None:intergenic | 40.0% | |
| GTGAAATTGAGGTTAGGGTT+AGG | + | tig0021940:25152-25171 | None:intergenic | 40.0% | |
| GAATTACGGGAGTGAAATTG+AGG | + | tig0021940:25163-25182 | None:intergenic | 40.0% | |
| !! | ACCTCGCTTTTGAGAATTAC+GGG | + | tig0021940:25176-25195 | None:intergenic | 40.0% |
| GAAGCGTGAATCAAATGATG+CGG | - | tig0021940:25253-25272 | Msa1395390:CDS | 40.0% | |
| GCAGTTGTAGCATAAGCATT+AGG | + | tig0021940:25368-25387 | None:intergenic | 40.0% | |
| AATTGTAGTACTGCTGGGAA+TGG | - | tig0021940:25476-25495 | Msa1395390:CDS | 40.0% | |
| GAGTTGTTTATCGCCGTTTA+AGG | - | tig0021940:25529-25548 | Msa1395390:CDS | 40.0% | |
| ATCGCCGTTTAAGGAATTGA+TGG | - | tig0021940:25538-25557 | Msa1395390:CDS | 40.0% | |
| CCAGCCATCAATTCCTTAAA+CGG | + | tig0021940:25545-25564 | None:intergenic | 40.0% | |
| CCGTTTCAGACGATGAATTT+AGG | - | tig0021940:25620-25639 | Msa1395390:CDS | 40.0% | |
| ! | GAGAATTGGTGGATGAGAAA+TGG | - | tig0021940:25654-25673 | Msa1395390:CDS | 40.0% |
| ! | AATTGGTGGATGAGAAATGG+AGG | - | tig0021940:25657-25676 | Msa1395390:CDS | 40.0% |
| ! | ATGGAGGAAGCAACAGATTT+TGG | - | tig0021940:25673-25692 | Msa1395390:CDS | 40.0% |
| CTTGATGAATTGCGTTCAGT+TGG | - | tig0021940:25752-25771 | Msa1395390:CDS | 40.0% | |
| GATGTCTTCTTCAGCGAAAA+CGG | + | tig0021940:24511-24530 | None:intergenic | 40.0% | |
| CGAATACGAAGAAGAAGATG+AGG | - | tig0021940:24554-24573 | Msa1395390:CDS | 40.0% | |
| ! | CAAACGTTGACGTTTGGAAT+CGG | + | tig0021940:24730-24749 | None:intergenic | 40.0% |
| TTGATCCAAACGTTGACGTT+TGG | + | tig0021940:24736-24755 | None:intergenic | 40.0% | |
| TGAGGAGAAAAAACCACCTA+TGG | - | tig0021940:24758-24777 | Msa1395390:CDS | 40.0% | |
| TTGCGTGAATCTTCAACCAT+AGG | + | tig0021940:24777-24796 | None:intergenic | 40.0% | |
| !!! | GCAAGCTTTTTCAACGTCTA+TGG | - | tig0021940:24793-24812 | Msa1395390:CDS | 40.0% |
| !! | GTTGAAATCGAGTTGAAGCT+TGG | + | tig0021940:24925-24944 | None:intergenic | 40.0% |
| TTGAAATCTCTCGCAAGATC+TGG | - | tig0021940:25060-25079 | Msa1395390:CDS | 40.0% | |
| GTCGTCTATAGTAACATCAC+CGG | + | tig0021940:25105-25124 | None:intergenic | 40.0% | |
| GTGAAATTGAGGTTAGGGTT+AGG | + | tig0021940:25152-25171 | None:intergenic | 40.0% | |
| GAATTACGGGAGTGAAATTG+AGG | + | tig0021940:25163-25182 | None:intergenic | 40.0% | |
| !! | ACCTCGCTTTTGAGAATTAC+GGG | + | tig0021940:25176-25195 | None:intergenic | 40.0% |
| GAAGCGTGAATCAAATGATG+CGG | - | tig0021940:25253-25272 | Msa1395390:CDS | 40.0% | |
| GCAGTTGTAGCATAAGCATT+AGG | + | tig0021940:25368-25387 | None:intergenic | 40.0% | |
| AATTGTAGTACTGCTGGGAA+TGG | - | tig0021940:25476-25495 | Msa1395390:CDS | 40.0% | |
| GAGTTGTTTATCGCCGTTTA+AGG | - | tig0021940:25529-25548 | Msa1395390:CDS | 40.0% | |
| ATCGCCGTTTAAGGAATTGA+TGG | - | tig0021940:25538-25557 | Msa1395390:CDS | 40.0% | |
| CCAGCCATCAATTCCTTAAA+CGG | + | tig0021940:25545-25564 | None:intergenic | 40.0% | |
| CCGTTTCAGACGATGAATTT+AGG | - | tig0021940:25620-25639 | Msa1395390:CDS | 40.0% | |
| ! | GAGAATTGGTGGATGAGAAA+TGG | - | tig0021940:25654-25673 | Msa1395390:CDS | 40.0% |
| ! | AATTGGTGGATGAGAAATGG+AGG | - | tig0021940:25657-25676 | Msa1395390:CDS | 40.0% |
| ! | ATGGAGGAAGCAACAGATTT+TGG | - | tig0021940:25673-25692 | Msa1395390:CDS | 40.0% |
| CTTGATGAATTGCGTTCAGT+TGG | - | tig0021940:25752-25771 | Msa1395390:CDS | 40.0% | |
| !! | GTTGCGGTTGGTGTTAGAAT+TGG | + | tig0021940:24684-24703 | None:intergenic | 45.0% |
| ! | ACGTTTGGAATCGGTTGAGT+CGG | + | tig0021940:24721-24740 | None:intergenic | 45.0% |
| CGATTCCAAACGTCAACGTT+TGG | - | tig0021940:24728-24747 | Msa1395390:CDS | 45.0% | |
| CGTGAATCTTCAACCATAGG+TGG | + | tig0021940:24774-24793 | None:intergenic | 45.0% | |
| GACGAGATGGAACTGTTACA+AGG | - | tig0021940:24825-24844 | Msa1395390:CDS | 45.0% | |
| CTCGATTACACAACACAGAG+AGG | - | tig0021940:24852-24871 | Msa1395390:CDS | 45.0% | |
| GTTGTGAGCAAAATGAGCTC+TGG | - | tig0021940:24996-25015 | Msa1395390:CDS | 45.0% | |
| ! | GAGCAAAATGAGCTCTGGTA+AGG | - | tig0021940:25001-25020 | Msa1395390:CDS | 45.0% |
| CTTGCGAGAGATTTCAAACG+TGG | + | tig0021940:25057-25076 | None:intergenic | 45.0% | |
| ATAGTAACATCACCGGCGAT+TGG | + | tig0021940:25098-25117 | None:intergenic | 45.0% | |
| TTGAGGTTAGGGTTAGGACT+TGG | + | tig0021940:25146-25165 | None:intergenic | 45.0% | |
| CGGGAGTGAAATTGAGGTTA+GGG | + | tig0021940:25157-25176 | None:intergenic | 45.0% | |
| ACGGGAGTGAAATTGAGGTT+AGG | + | tig0021940:25158-25177 | None:intergenic | 45.0% | |
| TCCCGTAATTCTCAAAAGCG+AGG | - | tig0021940:25172-25191 | Msa1395390:CDS | 45.0% | |
| CTTCTGATAGAAACGGATCG+AGG | + | tig0021940:25227-25246 | None:intergenic | 45.0% | |
| GTGTGATTGAAGAGACAGTG+AGG | - | tig0021940:25507-25526 | Msa1395390:CDS | 45.0% | |
| ! | CCGTTTAAGGAATTGATGGC+TGG | - | tig0021940:25542-25561 | Msa1395390:CDS | 45.0% |
| ! | GAATTGATGGCTGGTGCAAT+GGG | - | tig0021940:25551-25570 | Msa1395390:CDS | 45.0% |
| ! | TTCATCGTCTGAAACGGTAG+CGG | + | tig0021940:25617-25636 | None:intergenic | 45.0% |
| !!! | AGGTTTTGGAGGTGGAGAAT+TGG | - | tig0021940:25640-25659 | Msa1395390:CDS | 45.0% |
| !! | TTTTGGAGGTGGAGAATTGG+TGG | - | tig0021940:25643-25662 | Msa1395390:CDS | 45.0% |
| GATGAATTGCGTTCAGTTGG+TGG | - | tig0021940:25755-25774 | Msa1395390:CDS | 45.0% | |
| !! | GTTGCGGTTGGTGTTAGAAT+TGG | + | tig0021940:24684-24703 | None:intergenic | 45.0% |
| ! | ACGTTTGGAATCGGTTGAGT+CGG | + | tig0021940:24721-24740 | None:intergenic | 45.0% |
| CGATTCCAAACGTCAACGTT+TGG | - | tig0021940:24728-24747 | Msa1395390:CDS | 45.0% | |
| CGTGAATCTTCAACCATAGG+TGG | + | tig0021940:24774-24793 | None:intergenic | 45.0% | |
| GACGAGATGGAACTGTTACA+AGG | - | tig0021940:24825-24844 | Msa1395390:CDS | 45.0% | |
| CTCGATTACACAACACAGAG+AGG | - | tig0021940:24852-24871 | Msa1395390:CDS | 45.0% | |
| GTTGTGAGCAAAATGAGCTC+TGG | - | tig0021940:24996-25015 | Msa1395390:CDS | 45.0% | |
| ! | GAGCAAAATGAGCTCTGGTA+AGG | - | tig0021940:25001-25020 | Msa1395390:CDS | 45.0% |
| CTTGCGAGAGATTTCAAACG+TGG | + | tig0021940:25057-25076 | None:intergenic | 45.0% | |
| ATAGTAACATCACCGGCGAT+TGG | + | tig0021940:25098-25117 | None:intergenic | 45.0% | |
| TTGAGGTTAGGGTTAGGACT+TGG | + | tig0021940:25146-25165 | None:intergenic | 45.0% | |
| CGGGAGTGAAATTGAGGTTA+GGG | + | tig0021940:25157-25176 | None:intergenic | 45.0% | |
| ACGGGAGTGAAATTGAGGTT+AGG | + | tig0021940:25158-25177 | None:intergenic | 45.0% | |
| TCCCGTAATTCTCAAAAGCG+AGG | - | tig0021940:25172-25191 | Msa1395390:CDS | 45.0% | |
| CTTCTGATAGAAACGGATCG+AGG | + | tig0021940:25227-25246 | None:intergenic | 45.0% | |
| GTGTGATTGAAGAGACAGTG+AGG | - | tig0021940:25507-25526 | Msa1395390:CDS | 45.0% | |
| ! | CCGTTTAAGGAATTGATGGC+TGG | - | tig0021940:25542-25561 | Msa1395390:CDS | 45.0% |
| ! | GAATTGATGGCTGGTGCAAT+GGG | - | tig0021940:25551-25570 | Msa1395390:CDS | 45.0% |
| ! | TTCATCGTCTGAAACGGTAG+CGG | + | tig0021940:25617-25636 | None:intergenic | 45.0% |
| !!! | AGGTTTTGGAGGTGGAGAAT+TGG | - | tig0021940:25640-25659 | Msa1395390:CDS | 45.0% |
| !! | TTTTGGAGGTGGAGAATTGG+TGG | - | tig0021940:25643-25662 | Msa1395390:CDS | 45.0% |
| GATGAATTGCGTTCAGTTGG+TGG | - | tig0021940:25755-25774 | Msa1395390:CDS | 45.0% | |
| GGAACGGAGATAGAAGCAGA+TGG | + | tig0021940:24621-24640 | None:intergenic | 50.0% | |
| !! | GCGGTTGGTGTTAGAATTGG+AGG | + | tig0021940:24681-24700 | None:intergenic | 50.0% |
| AAGATGATCGTGGTTGCGGT+TGG | + | tig0021940:24696-24715 | None:intergenic | 50.0% | |
| CAGTTCCATCTCGTCTTCGT+CGG | + | tig0021940:24820-24839 | None:intergenic | 50.0% | |
| GCGAGGTAAATTCAACCACG+CGG | - | tig0021940:25189-25208 | Msa1395390:CDS | 50.0% | |
| ! | GGAATTGATGGCTGGTGCAA+TGG | - | tig0021940:25550-25569 | Msa1395390:CDS | 50.0% |
| GGAACGGAGATAGAAGCAGA+TGG | + | tig0021940:24621-24640 | None:intergenic | 50.0% | |
| !! | GCGGTTGGTGTTAGAATTGG+AGG | + | tig0021940:24681-24700 | None:intergenic | 50.0% |
| AAGATGATCGTGGTTGCGGT+TGG | + | tig0021940:24696-24715 | None:intergenic | 50.0% | |
| CAGTTCCATCTCGTCTTCGT+CGG | + | tig0021940:24820-24839 | None:intergenic | 50.0% | |
| GCGAGGTAAATTCAACCACG+CGG | - | tig0021940:25189-25208 | Msa1395390:CDS | 50.0% | |
| ! | GGAATTGATGGCTGGTGCAA+TGG | - | tig0021940:25550-25569 | Msa1395390:CDS | 50.0% |
| GGCGAAGATGATCGTGGTTG+CGG | + | tig0021940:24700-24719 | None:intergenic | 55.0% | |
| TGAGTCGGCGAAGATGATCG+TGG | + | tig0021940:24706-24725 | None:intergenic | 55.0% | |
| ATGGACCGACGAAGACGAGA+TGG | - | tig0021940:24812-24831 | Msa1395390:CDS | 55.0% | |
| TGCGGATCTTCTCAACGAGC+TGG | + | tig0021940:24953-24972 | None:intergenic | 55.0% | |
| AGCTCGTTGAGAAGATCCGC+AGG | - | tig0021940:24952-24971 | Msa1395390:CDS | 55.0% | |
| AACAACGTAGCGCCAATCGC+CGG | - | tig0021940:25083-25102 | Msa1395390:CDS | 55.0% | |
| ACTGCTGGGAATGGTGTAGC+TGG | - | tig0021940:25485-25504 | Msa1395390:CDS | 55.0% | |
| ! | TTGATGGCTGGTGCAATGGG+AGG | - | tig0021940:25554-25573 | Msa1395390:CDS | 55.0% |
| GCAATGGGAGGAGGACTGTT+TGG | - | tig0021940:25566-25585 | Msa1395390:CDS | 55.0% | |
| GGCGAAGATGATCGTGGTTG+CGG | + | tig0021940:24700-24719 | None:intergenic | 55.0% | |
| TGAGTCGGCGAAGATGATCG+TGG | + | tig0021940:24706-24725 | None:intergenic | 55.0% | |
| ATGGACCGACGAAGACGAGA+TGG | - | tig0021940:24812-24831 | Msa1395390:CDS | 55.0% | |
| TGCGGATCTTCTCAACGAGC+TGG | + | tig0021940:24953-24972 | None:intergenic | 55.0% | |
| AGCTCGTTGAGAAGATCCGC+AGG | - | tig0021940:24952-24971 | Msa1395390:CDS | 55.0% | |
| AACAACGTAGCGCCAATCGC+CGG | - | tig0021940:25083-25102 | Msa1395390:CDS | 55.0% | |
| ACTGCTGGGAATGGTGTAGC+TGG | - | tig0021940:25485-25504 | Msa1395390:CDS | 55.0% | |
| ! | TTGATGGCTGGTGCAATGGG+AGG | - | tig0021940:25554-25573 | Msa1395390:CDS | 55.0% |
| GCAATGGGAGGAGGACTGTT+TGG | - | tig0021940:25566-25585 | Msa1395390:CDS | 55.0% | |
| TCTGAGAGCTCCTCCGGGAA+CGG | + | tig0021940:24658-24677 | None:intergenic | 60.0% | |
| TGGAGGTCTGAGAGCTCCTC+CGG | + | tig0021940:24664-24683 | None:intergenic | 60.0% | |
| !! | CAACCACGCGGAAGCGTTCA+CGG | - | tig0021940:25201-25220 | Msa1395390:CDS | 60.0% |
| ATGGCTGGTGCAATGGGAGG+AGG | - | tig0021940:25557-25576 | Msa1395390:CDS | 60.0% | |
| GGAGGACTGTTTGGATCGCG+TGG | - | tig0021940:25575-25594 | Msa1395390:CDS | 60.0% | |
| TCTGAGAGCTCCTCCGGGAA+CGG | + | tig0021940:24658-24677 | None:intergenic | 60.0% | |
| TGGAGGTCTGAGAGCTCCTC+CGG | + | tig0021940:24664-24683 | None:intergenic | 60.0% | |
| !! | CAACCACGCGGAAGCGTTCA+CGG | - | tig0021940:25201-25220 | Msa1395390:CDS | 60.0% |
| ATGGCTGGTGCAATGGGAGG+AGG | - | tig0021940:25557-25576 | Msa1395390:CDS | 60.0% | |
| GGAGGACTGTTTGGATCGCG+TGG | - | tig0021940:25575-25594 | Msa1395390:CDS | 60.0% | |
| GGAGGTCTGAGAGCTCCTCC+GGG | + | tig0021940:24663-24682 | None:intergenic | 65.0% | |
| GGAGGTCTGAGAGCTCCTCC+GGG | + | tig0021940:24663-24682 | None:intergenic | 65.0% | |
| !! | GGCGACGGTGACGGAGGGAA+CGG | + | tig0021940:24637-24656 | None:intergenic | 70.0% |
| !! | GGAACGGCGACGGTGACGGA+GGG | + | tig0021940:24642-24661 | None:intergenic | 70.0% |
| TCCGTCACCGTCGCCGTTCC+CGG | - | tig0021940:24642-24661 | Msa1395390:CDS | 70.0% | |
| TCCGGGAACGGCGACGGTGA+CGG | + | tig0021940:24646-24665 | None:intergenic | 70.0% | |
| AGCTCCTCCGGGAACGGCGA+CGG | + | tig0021940:24652-24671 | None:intergenic | 70.0% | |
| AGGCCGTGAACGCTTCCGCG+TGG | + | tig0021940:25207-25226 | None:intergenic | 70.0% | |
| !! | GGCGACGGTGACGGAGGGAA+CGG | + | tig0021940:24637-24656 | None:intergenic | 70.0% |
| !! | GGAACGGCGACGGTGACGGA+GGG | + | tig0021940:24642-24661 | None:intergenic | 70.0% |
| TCCGTCACCGTCGCCGTTCC+CGG | - | tig0021940:24642-24661 | Msa1395390:CDS | 70.0% | |
| TCCGGGAACGGCGACGGTGA+CGG | + | tig0021940:24646-24665 | None:intergenic | 70.0% | |
| AGCTCCTCCGGGAACGGCGA+CGG | + | tig0021940:24652-24671 | None:intergenic | 70.0% | |
| AGGCCGTGAACGCTTCCGCG+TGG | + | tig0021940:25207-25226 | None:intergenic | 70.0% | |
| ! | GGGAACGGCGACGGTGACGG+AGG | + | tig0021940:24643-24662 | None:intergenic | 75.0% |
| GTCACCGTCGCCGTTCCCGG+AGG | - | tig0021940:24645-24664 | Msa1395390:CDS | 75.0% | |
| ! | GGGAACGGCGACGGTGACGG+AGG | + | tig0021940:24643-24662 | None:intergenic | 75.0% |
| GTCACCGTCGCCGTTCCCGG+AGG | - | tig0021940:24645-24664 | Msa1395390:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021940 | gene | 24486 | 25793 | 24486 | ID=Msa1395390;Name=Msa1395390 |
| tig0021940 | mRNA | 24486 | 25793 | 24486 | ID=Msa1395390-mRNA-1;Parent=Msa1395390;Name=Msa1395390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|435 |
| tig0021940 | exon | 24486 | 25793 | 24486 | ID=Msa1395390-mRNA-1:exon:14892;Parent=Msa1395390-mRNA-1 |
| tig0021940 | CDS | 24486 | 25793 | 24486 | ID=Msa1395390-mRNA-1:cds;Parent=Msa1395390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
