AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572820 MtrunA17_Chr8g0388411 95.714 140 6 0 1 140 1 140 3.93e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572820 AT5G42070.1 78.571 70 15 0 65 134 69 138 4.04e-36 122

Find 62 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAATGTATTCGTAAAAT+AGG 0.190213 4_1:+75778223 Msa0572820:three_prime_UTR
TGTCCTGGATTTGTGGCTTC+TGG 0.277176 4_1:+75776990 Msa0572820:CDS
GGTGGTATTGCAACAGTTCC+TGG 0.294401 4_1:+75776933 Msa0572820:CDS
CATGGCCTGTATGCCTTTAT+AGG 0.312442 4_1:-75776969 None:intergenic
CTTTGGCTGGTGGCCTATAA+AGG 0.340571 4_1:+75776956 Msa0572820:CDS
AAAATATGCTGTAAGGATTC+TGG 0.343912 4_1:+75778186 Msa0572820:three_prime_UTR
ATTGCAACAGTTCCTGGCTT+TGG 0.355448 4_1:+75776939 Msa0572820:CDS
CAGGCCATGTCCTGGATTTG+TGG 0.362074 4_1:+75776983 Msa0572820:CDS
ATCAATGTATTCGTAAAATA+GGG 0.371971 4_1:+75778224 Msa0572820:three_prime_UTR
TGCCCCTCTTCCTTAACCCT+GGG 0.391184 4_1:-75778158 None:intergenic
TTGCCCCTCTTCCTTAACCC+TGG 0.391273 4_1:-75778159 None:intergenic
CAACAGTTCCTGGCTTTGGC+TGG 0.392114 4_1:+75776943 Msa0572820:CDS
AAAGTAATGTTGGAAGTTAA+CGG 0.425034 4_1:-75778323 None:intergenic
CAGTTCCTGGCTTTGGCTGG+TGG 0.448784 4_1:+75776946 Msa0572820:CDS
GCAGAAGAAATGAGTGAAGT+TGG 0.456714 4_1:-75776715 None:intergenic
CAATGGTGAGGGTAGGATGC+AGG 0.456901 4_1:+75776911 Msa0572820:CDS
GGAAGTTAACGGCAAGGAAC+CGG 0.465689 4_1:-75778312 None:intergenic
TGACATAAAACCCAGGGTTA+AGG 0.473157 4_1:+75778148 Msa0572820:three_prime_UTR
GAAACAGCAAGTTCATCATC+TGG 0.480522 4_1:-75776739 None:intergenic
GACGAGGTTGTCTCCGGTAG+TGG 0.489301 4_1:+75777044 Msa0572820:CDS
CCACCAGAAGCCACAAATCC+AGG 0.502695 4_1:-75776993 None:intergenic
TGGATGGTACCTCTGTTTAG+TGG 0.504482 4_1:-75776779 None:intergenic
AAGGCATACAGGCCATGTCC+TGG 0.519447 4_1:+75776975 Msa0572820:CDS
TTGTATCATAAAAGTAATGT+TGG 0.520043 4_1:-75778333 None:intergenic
AAAACCCAGGGTTAAGGAAG+AGG 0.530788 4_1:+75778154 Msa0572820:three_prime_UTR
GGAACAAATATCTTAGTAGC+TGG 0.533811 4_1:-75776676 None:intergenic
TGGTGGTAGGTACAGACGAC+AGG 0.534138 4_1:+75777010 Msa0572820:CDS
GATTTGTGGCTTCTGGTGGT+AGG 0.534194 4_1:+75776997 Msa0572820:CDS
GACTTGGAGTCAGTTGCAGT+TGG 0.535101 4_1:-75777080 None:intergenic
ATAGGCCACCAGCCAAAGCC+AGG 0.536722 4_1:-75776951 None:intergenic
TGAAGAGCTAAGTGTTTGCA+AGG 0.537825 4_1:+75778098 Msa0572820:exon
AGCATGGACGAGGTTGTCTC+CGG 0.542240 4_1:+75777038 Msa0572820:CDS
GAAGTTGGAGAGCATAGTGT+GGG 0.545271 4_1:-75776700 None:intergenic
CACCTCAATGAAGCAGTGGC+TGG 0.545479 4_1:-75778127 None:intergenic
GGAAACGAAGAAATTGAGAA+AGG 0.546629 4_1:+75776885 Msa0572820:CDS
AAACCCAGGGTTAAGGAAGA+GGG 0.548593 4_1:+75778155 Msa0572820:three_prime_UTR
TGAAGTTGGAGAGCATAGTG+TGG 0.558341 4_1:-75776701 None:intergenic
CCTGGATTTGTGGCTTCTGG+TGG 0.563457 4_1:+75776993 Msa0572820:CDS
GAAATTGAGAAAGGATGCAA+TGG 0.563789 4_1:+75776894 Msa0572820:CDS
TGATGATAATGTTGAGGTGT+TGG 0.564881 4_1:-75776622 None:intergenic
AAGGATGCAATGGTGAGGGT+AGG 0.574706 4_1:+75776904 Msa0572820:CDS
AATGGTGAGGGTAGGATGCA+GGG 0.575709 4_1:+75776912 Msa0572820:CDS
CAGACGACAGGGACAAAGCA+TGG 0.576125 4_1:+75777022 Msa0572820:CDS
GGTGGCCTATAAAGGCATAC+AGG 0.580795 4_1:+75776964 Msa0572820:CDS
GAGAAAGGATGCAATGGTGA+GGG 0.581838 4_1:+75776900 Msa0572820:CDS
TACCAGCCACTGCTTCATTG+AGG 0.593729 4_1:+75778125 Msa0572820:three_prime_UTR
AGACAATAGATACCTTGACT+TGG 0.607021 4_1:-75777096 None:intergenic
ATGTCACCTCAATGAAGCAG+TGG 0.616278 4_1:-75778131 None:intergenic
TGAGAAAGGATGCAATGGTG+AGG 0.617666 4_1:+75776899 Msa0572820:CDS
TTGAGGTGACATAAAACCCA+GGG 0.626355 4_1:+75778142 Msa0572820:three_prime_UTR
GTTGGAGAGCATAGTGTGGG+AGG 0.638611 4_1:-75776697 None:intergenic
AATGTTGGAAGTTAACGGCA+AGG 0.641620 4_1:-75778318 None:intergenic
AACAGCGGTTGCAAAGCATG+TGG 0.642827 4_1:+75776864 Msa0572820:intron
AACCCAGGGTTAAGGAAGAG+GGG 0.643408 4_1:+75778156 Msa0572820:three_prime_UTR
ACAGGGACAAAGCATGGACG+AGG 0.654227 4_1:+75777028 Msa0572820:CDS
CTGCAACTGACTCCAAGTCA+AGG 0.664830 4_1:+75777084 Msa0572820:CDS
ATTGAGGTGACATAAAACCC+AGG 0.671779 4_1:+75778141 Msa0572820:three_prime_UTR
TGAACGTGATGATAATGTTG+AGG 0.683199 4_1:-75776628 None:intergenic
GAAGCCACAAATCCAGGACA+TGG 0.686791 4_1:-75776987 None:intergenic
GGTGGTAGGTACAGACGACA+GGG 0.692150 4_1:+75777011 Msa0572820:CDS
CAGAATTCTCCACTAAACAG+AGG 0.708713 4_1:+75776770 Msa0572820:CDS
GGTGAGGGTAGGATGCAGGG+TGG 0.740434 4_1:+75776915 Msa0572820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAATAAAAAATA+GGG - chr4_1:75777301-75777320 None:intergenic 0.0%
!! AAAATAAAAAATAAAAAATA+GGG - chr4_1:75777301-75777320 None:intergenic 0.0%
!!! AAAGATTTTTATTTAATGAA+GGG - chr4_1:75776810-75776829 None:intergenic 10.0%
!!! TAAAGATTTTTATTTAATGA+AGG - chr4_1:75776811-75776830 None:intergenic 10.0%
!! AAGATTTATCTATAAATAAA+TGG - chr4_1:75777152-75777171 None:intergenic 10.0%
!!! AAAGATTTTTATTTAATGAA+GGG - chr4_1:75776810-75776829 None:intergenic 10.0%
!!! TAAAGATTTTTATTTAATGA+AGG - chr4_1:75776811-75776830 None:intergenic 10.0%
!! AAGATTTATCTATAAATAAA+TGG - chr4_1:75777152-75777171 None:intergenic 10.0%
!!! AAGATTTTTATTTAATGAAG+GGG - chr4_1:75776809-75776828 None:intergenic 15.0%
!! CTATGGAATTATATAATAAA+AGG - chr4_1:75777592-75777611 None:intergenic 15.0%
!!! CTTTTATTATATAATTCCAT+AGG + chr4_1:75777590-75777609 Msa0572820:intron 15.0%
!!! TGATAATAACTCTTTTTTTT+TGG + chr4_1:75777859-75777878 Msa0572820:intron 15.0%
!!! AAGATTTTTATTTAATGAAG+GGG - chr4_1:75776809-75776828 None:intergenic 15.0%
!! CTATGGAATTATATAATAAA+AGG - chr4_1:75777592-75777611 None:intergenic 15.0%
!!! CTTTTATTATATAATTCCAT+AGG + chr4_1:75777590-75777609 Msa0572820:intron 15.0%
!!! TGATAATAACTCTTTTTTTT+TGG + chr4_1:75777859-75777878 Msa0572820:intron 15.0%
!! TCTATAAATAAATGGTAAAC+TGG - chr4_1:75777144-75777163 None:intergenic 20.0%
!!! ATTTTGTTTATGTTGATAGA+AGG + chr4_1:75777262-75777281 Msa0572820:intron 20.0%
!!! TTTTGTTTATGTTGATAGAA+GGG + chr4_1:75777263-75777282 Msa0572820:intron 20.0%
!! AATTGTGTGAATTGTTATAT+AGG + chr4_1:75777914-75777933 Msa0572820:intron 20.0%
!! CTAATCAGTATAATATATCA+TGG + chr4_1:75778034-75778053 Msa0572820:intron 20.0%
!! TATCAATGTATTCGTAAAAT+AGG + chr4_1:75778223-75778242 Msa0572820:three_prime_UTR 20.0%
!! ATCAATGTATTCGTAAAATA+GGG + chr4_1:75778224-75778243 Msa0572820:three_prime_UTR 20.0%
!!! TTTTTTTTTTCATTGATCAC+CGG + chr4_1:75778293-75778312 Msa0572820:three_prime_UTR 20.0%
!! TTGTATCATAAAAGTAATGT+TGG - chr4_1:75778336-75778355 None:intergenic 20.0%
!! TCTATAAATAAATGGTAAAC+TGG - chr4_1:75777144-75777163 None:intergenic 20.0%
!!! ATTTTGTTTATGTTGATAGA+AGG + chr4_1:75777262-75777281 Msa0572820:intron 20.0%
!!! TTTTGTTTATGTTGATAGAA+GGG + chr4_1:75777263-75777282 Msa0572820:intron 20.0%
!! AATTGTGTGAATTGTTATAT+AGG + chr4_1:75777914-75777933 Msa0572820:intron 20.0%
!! CTAATCAGTATAATATATCA+TGG + chr4_1:75778034-75778053 Msa0572820:intron 20.0%
!! TATCAATGTATTCGTAAAAT+AGG + chr4_1:75778223-75778242 Msa0572820:three_prime_UTR 20.0%
!! ATCAATGTATTCGTAAAATA+GGG + chr4_1:75778224-75778243 Msa0572820:three_prime_UTR 20.0%
!!! TTTTTTTTTTCATTGATCAC+CGG + chr4_1:75778293-75778312 Msa0572820:three_prime_UTR 20.0%
!! TTGTATCATAAAAGTAATGT+TGG - chr4_1:75778336-75778355 None:intergenic 20.0%
! TGTACAAACCAAAAAAATCA+TGG + chr4_1:75776653-75776672 Msa0572820:CDS 25.0%
! TTATTTAATGAAGGGGAAAA+TGG - chr4_1:75776802-75776821 None:intergenic 25.0%
!!! CAAATGAGAAGGATTTTAAT+AGG + chr4_1:75777230-75777249 Msa0572820:intron 25.0%
!! TTTGTTTATGTTGATAGAAG+GGG + chr4_1:75777264-75777283 Msa0572820:intron 25.0%
!!! ATTTTTTATTTTGGTTCGCA+AGG + chr4_1:75777309-75777328 Msa0572820:intron 25.0%
!!! TTTTTTATTTTGGTTCGCAA+GGG + chr4_1:75777310-75777329 Msa0572820:intron 25.0%
! AAAGATAAGATCAAGAGTTA+AGG - chr4_1:75777499-75777518 None:intergenic 25.0%
!!! AGGTGTTATTTAAGATAGAA+AGG - chr4_1:75777765-75777784 None:intergenic 25.0%
! ATAAAGTGAGATGTATTTCA+TGG - chr4_1:75777822-75777841 None:intergenic 25.0%
! TGAATTGTTATATAGGATGA+TGG + chr4_1:75777921-75777940 Msa0572820:intron 25.0%
!! CTTTTTGTTACTGCAAAATT+TGG - chr4_1:75778062-75778081 None:intergenic 25.0%
!! CAAATTTTGCAGTAACAAAA+AGG + chr4_1:75778060-75778079 Msa0572820:intron 25.0%
! CAAAAACAAAATATGCTGTA+AGG + chr4_1:75778179-75778198 Msa0572820:three_prime_UTR 25.0%
! AAAGTAATGTTGGAAGTTAA+CGG - chr4_1:75778326-75778345 None:intergenic 25.0%
! TGTACAAACCAAAAAAATCA+TGG + chr4_1:75776653-75776672 Msa0572820:CDS 25.0%
! TTATTTAATGAAGGGGAAAA+TGG - chr4_1:75776802-75776821 None:intergenic 25.0%
!!! CAAATGAGAAGGATTTTAAT+AGG + chr4_1:75777230-75777249 Msa0572820:intron 25.0%
!! TTTGTTTATGTTGATAGAAG+GGG + chr4_1:75777264-75777283 Msa0572820:intron 25.0%
!!! ATTTTTTATTTTGGTTCGCA+AGG + chr4_1:75777309-75777328 Msa0572820:intron 25.0%
!!! TTTTTTATTTTGGTTCGCAA+GGG + chr4_1:75777310-75777329 Msa0572820:intron 25.0%
! AAAGATAAGATCAAGAGTTA+AGG - chr4_1:75777499-75777518 None:intergenic 25.0%
!!! AGGTGTTATTTAAGATAGAA+AGG - chr4_1:75777765-75777784 None:intergenic 25.0%
! ATAAAGTGAGATGTATTTCA+TGG - chr4_1:75777822-75777841 None:intergenic 25.0%
! TGAATTGTTATATAGGATGA+TGG + chr4_1:75777921-75777940 Msa0572820:intron 25.0%
!! CTTTTTGTTACTGCAAAATT+TGG - chr4_1:75778062-75778081 None:intergenic 25.0%
!! CAAATTTTGCAGTAACAAAA+AGG + chr4_1:75778060-75778079 Msa0572820:intron 25.0%
! CAAAAACAAAATATGCTGTA+AGG + chr4_1:75778179-75778198 Msa0572820:three_prime_UTR 25.0%
! AAAGTAATGTTGGAAGTTAA+CGG - chr4_1:75778326-75778345 None:intergenic 25.0%
!!! TGTTTTAATTTTGCCACTAC+CGG - chr4_1:75777060-75777079 None:intergenic 30.0%
TTGTCTCTTTCTCATGTATA+TGG + chr4_1:75777113-75777132 Msa0572820:intron 30.0%
TGTCTCTTTCTCATGTATAT+GGG + chr4_1:75777114-75777133 Msa0572820:intron 30.0%
TCTAGTTAGTTCAAATGAGA+AGG + chr4_1:75777219-75777238 Msa0572820:intron 30.0%
!!! TTTTTATTTTGGTTCGCAAG+GGG + chr4_1:75777311-75777330 Msa0572820:intron 30.0%
CTTGATTCTAAGTCTTTCTT+AGG + chr4_1:75777385-75777404 Msa0572820:intron 30.0%
GATCAAGAGTTAAGGTAATT+TGG - chr4_1:75777491-75777510 None:intergenic 30.0%
!! AAGAGTGTGTTTTGCAAATA+GGG + chr4_1:75777661-75777680 Msa0572820:intron 30.0%
ATGAAATATTGGAACACTTG+AGG - chr4_1:75777785-75777804 None:intergenic 30.0%
TAGTTCGGTAGATGAAATAT+TGG - chr4_1:75777796-75777815 None:intergenic 30.0%
!! TGTATTTCATGGTTCTAGTT+CGG - chr4_1:75777811-75777830 None:intergenic 30.0%
! TACTGATTAGAAGCTAAAGA+CGG - chr4_1:75778024-75778043 None:intergenic 30.0%
! TTTTGCAGTAACAAAAAGGA+TGG + chr4_1:75778064-75778083 Msa0572820:intron 30.0%
AAAATATGCTGTAAGGATTC+TGG + chr4_1:75778186-75778205 Msa0572820:three_prime_UTR 30.0%
!!! TGTTTTAATTTTGCCACTAC+CGG - chr4_1:75777060-75777079 None:intergenic 30.0%
TTGTCTCTTTCTCATGTATA+TGG + chr4_1:75777113-75777132 Msa0572820:intron 30.0%
TGTCTCTTTCTCATGTATAT+GGG + chr4_1:75777114-75777133 Msa0572820:intron 30.0%
TCTAGTTAGTTCAAATGAGA+AGG + chr4_1:75777219-75777238 Msa0572820:intron 30.0%
!!! TTTTTATTTTGGTTCGCAAG+GGG + chr4_1:75777311-75777330 Msa0572820:intron 30.0%
CTTGATTCTAAGTCTTTCTT+AGG + chr4_1:75777385-75777404 Msa0572820:intron 30.0%
GATCAAGAGTTAAGGTAATT+TGG - chr4_1:75777491-75777510 None:intergenic 30.0%
!! AAGAGTGTGTTTTGCAAATA+GGG + chr4_1:75777661-75777680 Msa0572820:intron 30.0%
ATGAAATATTGGAACACTTG+AGG - chr4_1:75777785-75777804 None:intergenic 30.0%
TAGTTCGGTAGATGAAATAT+TGG - chr4_1:75777796-75777815 None:intergenic 30.0%
!! TGTATTTCATGGTTCTAGTT+CGG - chr4_1:75777811-75777830 None:intergenic 30.0%
! TACTGATTAGAAGCTAAAGA+CGG - chr4_1:75778024-75778043 None:intergenic 30.0%
! TTTTGCAGTAACAAAAAGGA+TGG + chr4_1:75778064-75778083 Msa0572820:intron 30.0%
AAAATATGCTGTAAGGATTC+TGG + chr4_1:75778186-75778205 Msa0572820:three_prime_UTR 30.0%
! TGATGATAATGTTGAGGTGT+TGG - chr4_1:75776625-75776644 None:intergenic 35.0%
! TGAACGTGATGATAATGTTG+AGG - chr4_1:75776631-75776650 None:intergenic 35.0%
GGAACAAATATCTTAGTAGC+TGG - chr4_1:75776679-75776698 None:intergenic 35.0%
TTAATGAAGGGGAAAATGGA+TGG - chr4_1:75776798-75776817 None:intergenic 35.0%
GGAAACGAAGAAATTGAGAA+AGG + chr4_1:75776885-75776904 Msa0572820:CDS 35.0%
GAAATTGAGAAAGGATGCAA+TGG + chr4_1:75776894-75776913 Msa0572820:CDS 35.0%
AGACAATAGATACCTTGACT+TGG - chr4_1:75777099-75777118 None:intergenic 35.0%
! AAGCTGCATCAAGACTTTTA+AGG + chr4_1:75777195-75777214 Msa0572820:intron 35.0%
! AGCTGCATCAAGACTTTTAA+GGG + chr4_1:75777196-75777215 Msa0572820:intron 35.0%
TCACCTCTACGTTCAATTAA+AGG + chr4_1:75777408-75777427 Msa0572820:intron 35.0%
CACCTCTACGTTCAATTAAA+GGG + chr4_1:75777409-75777428 Msa0572820:intron 35.0%
ATTAAAGGGCTATGACTATG+AGG + chr4_1:75777423-75777442 Msa0572820:intron 35.0%
TGCTGTCTGTGTTAAATGAT+TGG - chr4_1:75777531-75777550 None:intergenic 35.0%
!! CATAAAGCACTGTGAATTAG+TGG + chr4_1:75777613-75777632 Msa0572820:intron 35.0%
!! GAAGAGTGTGTTTTGCAAAT+AGG + chr4_1:75777660-75777679 Msa0572820:intron 35.0%
AGGTGTTTCTTAAGCTAGAA+AGG - chr4_1:75777745-75777764 None:intergenic 35.0%
!! TTGGTTTGGAGGAGAAAAAT+TGG - chr4_1:75777947-75777966 None:intergenic 35.0%
ATCAAGATTTGAGCTAGCAT+TGG - chr4_1:75777966-75777985 None:intergenic 35.0%
! TGATGATAATGTTGAGGTGT+TGG - chr4_1:75776625-75776644 None:intergenic 35.0%
! TGAACGTGATGATAATGTTG+AGG - chr4_1:75776631-75776650 None:intergenic 35.0%
GGAACAAATATCTTAGTAGC+TGG - chr4_1:75776679-75776698 None:intergenic 35.0%
TTAATGAAGGGGAAAATGGA+TGG - chr4_1:75776798-75776817 None:intergenic 35.0%
GGAAACGAAGAAATTGAGAA+AGG + chr4_1:75776885-75776904 Msa0572820:CDS 35.0%
GAAATTGAGAAAGGATGCAA+TGG + chr4_1:75776894-75776913 Msa0572820:CDS 35.0%
AGACAATAGATACCTTGACT+TGG - chr4_1:75777099-75777118 None:intergenic 35.0%
! AAGCTGCATCAAGACTTTTA+AGG + chr4_1:75777195-75777214 Msa0572820:intron 35.0%
! AGCTGCATCAAGACTTTTAA+GGG + chr4_1:75777196-75777215 Msa0572820:intron 35.0%
TCACCTCTACGTTCAATTAA+AGG + chr4_1:75777408-75777427 Msa0572820:intron 35.0%
CACCTCTACGTTCAATTAAA+GGG + chr4_1:75777409-75777428 Msa0572820:intron 35.0%
ATTAAAGGGCTATGACTATG+AGG + chr4_1:75777423-75777442 Msa0572820:intron 35.0%
TGCTGTCTGTGTTAAATGAT+TGG - chr4_1:75777531-75777550 None:intergenic 35.0%
!! CATAAAGCACTGTGAATTAG+TGG + chr4_1:75777613-75777632 Msa0572820:intron 35.0%
!! GAAGAGTGTGTTTTGCAAAT+AGG + chr4_1:75777660-75777679 Msa0572820:intron 35.0%
AGGTGTTTCTTAAGCTAGAA+AGG - chr4_1:75777745-75777764 None:intergenic 35.0%
!! TTGGTTTGGAGGAGAAAAAT+TGG - chr4_1:75777947-75777966 None:intergenic 35.0%
ATCAAGATTTGAGCTAGCAT+TGG - chr4_1:75777966-75777985 None:intergenic 35.0%
!!! GTAGCTGGCCATGATTTTTT+TGG - chr4_1:75776664-75776683 None:intergenic 40.0%
GCAGAAGAAATGAGTGAAGT+TGG - chr4_1:75776718-75776737 None:intergenic 40.0%
GAAACAGCAAGTTCATCATC+TGG - chr4_1:75776742-75776761 None:intergenic 40.0%
CAGAATTCTCCACTAAACAG+AGG + chr4_1:75776770-75776789 Msa0572820:CDS 40.0%
TTTGAGTAGTTGCTGAACAG+CGG + chr4_1:75776849-75776868 Msa0572820:intron 40.0%
AGCCCTTTAATTGAACGTAG+AGG - chr4_1:75777414-75777433 None:intergenic 40.0%
TTCACAGTGCTTTATGCCTA+TGG - chr4_1:75777609-75777628 None:intergenic 40.0%
!! GATTTGAGCTAGCATTGGTT+TGG - chr4_1:75777961-75777980 None:intergenic 40.0%
TGAAGAGCTAAGTGTTTGCA+AGG + chr4_1:75778098-75778117 Msa0572820:exon 40.0%
ATTGAGGTGACATAAAACCC+AGG + chr4_1:75778141-75778160 Msa0572820:three_prime_UTR 40.0%
TTGAGGTGACATAAAACCCA+GGG + chr4_1:75778142-75778161 Msa0572820:three_prime_UTR 40.0%
TGACATAAAACCCAGGGTTA+AGG + chr4_1:75778148-75778167 Msa0572820:three_prime_UTR 40.0%
AATGTTGGAAGTTAACGGCA+AGG - chr4_1:75778321-75778340 None:intergenic 40.0%
!!! GTAGCTGGCCATGATTTTTT+TGG - chr4_1:75776664-75776683 None:intergenic 40.0%
GCAGAAGAAATGAGTGAAGT+TGG - chr4_1:75776718-75776737 None:intergenic 40.0%
GAAACAGCAAGTTCATCATC+TGG - chr4_1:75776742-75776761 None:intergenic 40.0%
CAGAATTCTCCACTAAACAG+AGG + chr4_1:75776770-75776789 Msa0572820:CDS 40.0%
TTTGAGTAGTTGCTGAACAG+CGG + chr4_1:75776849-75776868 Msa0572820:intron 40.0%
AGCCCTTTAATTGAACGTAG+AGG - chr4_1:75777414-75777433 None:intergenic 40.0%
TTCACAGTGCTTTATGCCTA+TGG - chr4_1:75777609-75777628 None:intergenic 40.0%
!! GATTTGAGCTAGCATTGGTT+TGG - chr4_1:75777961-75777980 None:intergenic 40.0%
TGAAGAGCTAAGTGTTTGCA+AGG + chr4_1:75778098-75778117 Msa0572820:exon 40.0%
ATTGAGGTGACATAAAACCC+AGG + chr4_1:75778141-75778160 Msa0572820:three_prime_UTR 40.0%
TTGAGGTGACATAAAACCCA+GGG + chr4_1:75778142-75778161 Msa0572820:three_prime_UTR 40.0%
TGACATAAAACCCAGGGTTA+AGG + chr4_1:75778148-75778167 Msa0572820:three_prime_UTR 40.0%
AATGTTGGAAGTTAACGGCA+AGG - chr4_1:75778321-75778340 None:intergenic 40.0%
! GAAGTTGGAGAGCATAGTGT+GGG - chr4_1:75776703-75776722 None:intergenic 45.0%
! TGAAGTTGGAGAGCATAGTG+TGG - chr4_1:75776704-75776723 None:intergenic 45.0%
TGGATGGTACCTCTGTTTAG+TGG - chr4_1:75776782-75776801 None:intergenic 45.0%
TGAGAAAGGATGCAATGGTG+AGG + chr4_1:75776899-75776918 Msa0572820:CDS 45.0%
GAGAAAGGATGCAATGGTGA+GGG + chr4_1:75776900-75776919 Msa0572820:CDS 45.0%
ATTGCAACAGTTCCTGGCTT+TGG + chr4_1:75776939-75776958 Msa0572820:CDS 45.0%
CATGGCCTGTATGCCTTTAT+AGG - chr4_1:75776972-75776991 None:intergenic 45.0%
TAAAAGGCCTGCAAGTGTGT+AGG - chr4_1:75777576-75777595 None:intergenic 45.0%
! GGTGTTAGAGAGTGTGTTGT+CGG + chr4_1:75777682-75777701 Msa0572820:intron 45.0%
!! TTGAGCTAGCATTGGTTTGG+AGG - chr4_1:75777958-75777977 None:intergenic 45.0%
ATGTCACCTCAATGAAGCAG+TGG - chr4_1:75778134-75778153 None:intergenic 45.0%
AAAACCCAGGGTTAAGGAAG+AGG + chr4_1:75778154-75778173 Msa0572820:three_prime_UTR 45.0%
AAACCCAGGGTTAAGGAAGA+GGG + chr4_1:75778155-75778174 Msa0572820:three_prime_UTR 45.0%
! GAAGTTGGAGAGCATAGTGT+GGG - chr4_1:75776703-75776722 None:intergenic 45.0%
! TGAAGTTGGAGAGCATAGTG+TGG - chr4_1:75776704-75776723 None:intergenic 45.0%
TGGATGGTACCTCTGTTTAG+TGG - chr4_1:75776782-75776801 None:intergenic 45.0%
TGAGAAAGGATGCAATGGTG+AGG + chr4_1:75776899-75776918 Msa0572820:CDS 45.0%
GAGAAAGGATGCAATGGTGA+GGG + chr4_1:75776900-75776919 Msa0572820:CDS 45.0%
ATTGCAACAGTTCCTGGCTT+TGG + chr4_1:75776939-75776958 Msa0572820:CDS 45.0%
CATGGCCTGTATGCCTTTAT+AGG - chr4_1:75776972-75776991 None:intergenic 45.0%
TAAAAGGCCTGCAAGTGTGT+AGG - chr4_1:75777576-75777595 None:intergenic 45.0%
! GGTGTTAGAGAGTGTGTTGT+CGG + chr4_1:75777682-75777701 Msa0572820:intron 45.0%
!! TTGAGCTAGCATTGGTTTGG+AGG - chr4_1:75777958-75777977 None:intergenic 45.0%
ATGTCACCTCAATGAAGCAG+TGG - chr4_1:75778134-75778153 None:intergenic 45.0%
AAAACCCAGGGTTAAGGAAG+AGG + chr4_1:75778154-75778173 Msa0572820:three_prime_UTR 45.0%
AAACCCAGGGTTAAGGAAGA+GGG + chr4_1:75778155-75778174 Msa0572820:three_prime_UTR 45.0%
!! CAAAATAAAAAATAAAAAAT+AGG - chr4_1:75777302-75777321 None:intergenic 5.0%
!!! CTATTTTTTATTTTTTATTT+TGG + chr4_1:75777300-75777319 Msa0572820:intron 5.0%
!! CAAAATAAAAAATAAAAAAT+AGG - chr4_1:75777302-75777321 None:intergenic 5.0%
!!! CTATTTTTTATTTTTTATTT+TGG + chr4_1:75777300-75777319 Msa0572820:intron 5.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr4_1:75776564-75776583 Msa0572820:five_prime_UTR 50.0%
AACAGCGGTTGCAAAGCATG+TGG + chr4_1:75776864-75776883 Msa0572820:intron 50.0%
AAGGATGCAATGGTGAGGGT+AGG + chr4_1:75776904-75776923 Msa0572820:CDS 50.0%
AATGGTGAGGGTAGGATGCA+GGG + chr4_1:75776912-75776931 Msa0572820:CDS 50.0%
GGTGGTATTGCAACAGTTCC+TGG + chr4_1:75776933-75776952 Msa0572820:CDS 50.0%
CTTTGGCTGGTGGCCTATAA+AGG + chr4_1:75776956-75776975 Msa0572820:CDS 50.0%
! GGTGGCCTATAAAGGCATAC+AGG + chr4_1:75776964-75776983 Msa0572820:CDS 50.0%
GAAGCCACAAATCCAGGACA+TGG - chr4_1:75776990-75777009 None:intergenic 50.0%
TGTCCTGGATTTGTGGCTTC+TGG + chr4_1:75776990-75777009 Msa0572820:CDS 50.0%
GATTTGTGGCTTCTGGTGGT+AGG + chr4_1:75776997-75777016 Msa0572820:CDS 50.0%
GACTTGGAGTCAGTTGCAGT+TGG - chr4_1:75777083-75777102 None:intergenic 50.0%
! CTGCAACTGACTCCAAGTCA+AGG + chr4_1:75777084-75777103 Msa0572820:CDS 50.0%
CCTGCAAGTGTGTAGGCTAA+GGG - chr4_1:75777569-75777588 None:intergenic 50.0%
TGTCGGCACTCAAGCACTAT+TGG + chr4_1:75777699-75777718 Msa0572820:intron 50.0%
TACCAGCCACTGCTTCATTG+AGG + chr4_1:75778125-75778144 Msa0572820:three_prime_UTR 50.0%
AACCCAGGGTTAAGGAAGAG+GGG + chr4_1:75778156-75778175 Msa0572820:three_prime_UTR 50.0%
GGAAGTTAACGGCAAGGAAC+CGG - chr4_1:75778315-75778334 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr4_1:75776564-75776583 Msa0572820:five_prime_UTR 50.0%
AACAGCGGTTGCAAAGCATG+TGG + chr4_1:75776864-75776883 Msa0572820:intron 50.0%
AAGGATGCAATGGTGAGGGT+AGG + chr4_1:75776904-75776923 Msa0572820:CDS 50.0%
AATGGTGAGGGTAGGATGCA+GGG + chr4_1:75776912-75776931 Msa0572820:CDS 50.0%
GGTGGTATTGCAACAGTTCC+TGG + chr4_1:75776933-75776952 Msa0572820:CDS 50.0%
CTTTGGCTGGTGGCCTATAA+AGG + chr4_1:75776956-75776975 Msa0572820:CDS 50.0%
! GGTGGCCTATAAAGGCATAC+AGG + chr4_1:75776964-75776983 Msa0572820:CDS 50.0%
GAAGCCACAAATCCAGGACA+TGG - chr4_1:75776990-75777009 None:intergenic 50.0%
TGTCCTGGATTTGTGGCTTC+TGG + chr4_1:75776990-75777009 Msa0572820:CDS 50.0%
GATTTGTGGCTTCTGGTGGT+AGG + chr4_1:75776997-75777016 Msa0572820:CDS 50.0%
GACTTGGAGTCAGTTGCAGT+TGG - chr4_1:75777083-75777102 None:intergenic 50.0%
! CTGCAACTGACTCCAAGTCA+AGG + chr4_1:75777084-75777103 Msa0572820:CDS 50.0%
CCTGCAAGTGTGTAGGCTAA+GGG - chr4_1:75777569-75777588 None:intergenic 50.0%
TGTCGGCACTCAAGCACTAT+TGG + chr4_1:75777699-75777718 Msa0572820:intron 50.0%
TACCAGCCACTGCTTCATTG+AGG + chr4_1:75778125-75778144 Msa0572820:three_prime_UTR 50.0%
AACCCAGGGTTAAGGAAGAG+GGG + chr4_1:75778156-75778175 Msa0572820:three_prime_UTR 50.0%
GGAAGTTAACGGCAAGGAAC+CGG - chr4_1:75778315-75778334 None:intergenic 50.0%
! GTTGGAGAGCATAGTGTGGG+AGG - chr4_1:75776700-75776719 None:intergenic 55.0%
CAATGGTGAGGGTAGGATGC+AGG + chr4_1:75776911-75776930 Msa0572820:CDS 55.0%
!! CAACAGTTCCTGGCTTTGGC+TGG + chr4_1:75776943-75776962 Msa0572820:CDS 55.0%
AAGGCATACAGGCCATGTCC+TGG + chr4_1:75776975-75776994 Msa0572820:CDS 55.0%
CAGGCCATGTCCTGGATTTG+TGG + chr4_1:75776983-75777002 Msa0572820:CDS 55.0%
CCACCAGAAGCCACAAATCC+AGG - chr4_1:75776996-75777015 None:intergenic 55.0%
CCTGGATTTGTGGCTTCTGG+TGG + chr4_1:75776993-75777012 Msa0572820:CDS 55.0%
TGGTGGTAGGTACAGACGAC+AGG + chr4_1:75777010-75777029 Msa0572820:CDS 55.0%
GGTGGTAGGTACAGACGACA+GGG + chr4_1:75777011-75777030 Msa0572820:CDS 55.0%
CAGACGACAGGGACAAAGCA+TGG + chr4_1:75777022-75777041 Msa0572820:CDS 55.0%
ACAGGGACAAAGCATGGACG+AGG + chr4_1:75777028-75777047 Msa0572820:CDS 55.0%
AGCATGGACGAGGTTGTCTC+CGG + chr4_1:75777038-75777057 Msa0572820:CDS 55.0%
CCCTTAGCCTACACACTTGC+AGG + chr4_1:75777566-75777585 Msa0572820:intron 55.0%
GCCTGCAAGTGTGTAGGCTA+AGG - chr4_1:75777570-75777589 None:intergenic 55.0%
CACCTCAATGAAGCAGTGGC+TGG - chr4_1:75778130-75778149 None:intergenic 55.0%
TGCCCCTCTTCCTTAACCCT+GGG - chr4_1:75778161-75778180 None:intergenic 55.0%
TTGCCCCTCTTCCTTAACCC+TGG - chr4_1:75778162-75778181 None:intergenic 55.0%
! GTTGGAGAGCATAGTGTGGG+AGG - chr4_1:75776700-75776719 None:intergenic 55.0%
CAATGGTGAGGGTAGGATGC+AGG + chr4_1:75776911-75776930 Msa0572820:CDS 55.0%
!! CAACAGTTCCTGGCTTTGGC+TGG + chr4_1:75776943-75776962 Msa0572820:CDS 55.0%
AAGGCATACAGGCCATGTCC+TGG + chr4_1:75776975-75776994 Msa0572820:CDS 55.0%
CAGGCCATGTCCTGGATTTG+TGG + chr4_1:75776983-75777002 Msa0572820:CDS 55.0%
CCACCAGAAGCCACAAATCC+AGG - chr4_1:75776996-75777015 None:intergenic 55.0%
CCTGGATTTGTGGCTTCTGG+TGG + chr4_1:75776993-75777012 Msa0572820:CDS 55.0%
TGGTGGTAGGTACAGACGAC+AGG + chr4_1:75777010-75777029 Msa0572820:CDS 55.0%
GGTGGTAGGTACAGACGACA+GGG + chr4_1:75777011-75777030 Msa0572820:CDS 55.0%
CAGACGACAGGGACAAAGCA+TGG + chr4_1:75777022-75777041 Msa0572820:CDS 55.0%
ACAGGGACAAAGCATGGACG+AGG + chr4_1:75777028-75777047 Msa0572820:CDS 55.0%
AGCATGGACGAGGTTGTCTC+CGG + chr4_1:75777038-75777057 Msa0572820:CDS 55.0%
CCCTTAGCCTACACACTTGC+AGG + chr4_1:75777566-75777585 Msa0572820:intron 55.0%
GCCTGCAAGTGTGTAGGCTA+AGG - chr4_1:75777570-75777589 None:intergenic 55.0%
CACCTCAATGAAGCAGTGGC+TGG - chr4_1:75778130-75778149 None:intergenic 55.0%
TGCCCCTCTTCCTTAACCCT+GGG - chr4_1:75778161-75778180 None:intergenic 55.0%
TTGCCCCTCTTCCTTAACCC+TGG - chr4_1:75778162-75778181 None:intergenic 55.0%
!! CAGTTCCTGGCTTTGGCTGG+TGG + chr4_1:75776946-75776965 Msa0572820:CDS 60.0%
ATAGGCCACCAGCCAAAGCC+AGG - chr4_1:75776954-75776973 None:intergenic 60.0%
GACGAGGTTGTCTCCGGTAG+TGG + chr4_1:75777044-75777063 Msa0572820:CDS 60.0%
!! CAGTTCCTGGCTTTGGCTGG+TGG + chr4_1:75776946-75776965 Msa0572820:CDS 60.0%
ATAGGCCACCAGCCAAAGCC+AGG - chr4_1:75776954-75776973 None:intergenic 60.0%
GACGAGGTTGTCTCCGGTAG+TGG + chr4_1:75777044-75777063 Msa0572820:CDS 60.0%
GGTGAGGGTAGGATGCAGGG+TGG + chr4_1:75776915-75776934 Msa0572820:CDS 65.0%
GGTGAGGGTAGGATGCAGGG+TGG + chr4_1:75776915-75776934 Msa0572820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75776563 75778360 75776563 ID=Msa0572820;Name=Msa0572820
chr4_1 mRNA 75776563 75778360 75776563 ID=Msa0572820-mRNA-1;Parent=Msa0572820;Name=Msa0572820-mRNA-1;_AED=0.37;_eAED=0.37;_QI=35|1|1|1|0.5|0.33|3|252|155
chr4_1 exon 75776563 75776791 75776563 ID=Msa0572820-mRNA-1:exon:26289;Parent=Msa0572820-mRNA-1
chr4_1 exon 75776869 75777105 75776869 ID=Msa0572820-mRNA-1:exon:26290;Parent=Msa0572820-mRNA-1
chr4_1 exon 75778072 75778360 75778072 ID=Msa0572820-mRNA-1:exon:26291;Parent=Msa0572820-mRNA-1
chr4_1 five_prime_UTR 75776563 75776597 75776563 ID=Msa0572820-mRNA-1:five_prime_utr;Parent=Msa0572820-mRNA-1
chr4_1 CDS 75776598 75776791 75776598 ID=Msa0572820-mRNA-1:cds;Parent=Msa0572820-mRNA-1
chr4_1 CDS 75776869 75777105 75776869 ID=Msa0572820-mRNA-1:cds;Parent=Msa0572820-mRNA-1
chr4_1 CDS 75778072 75778108 75778072 ID=Msa0572820-mRNA-1:cds;Parent=Msa0572820-mRNA-1
chr4_1 three_prime_UTR 75778109 75778360 75778109 ID=Msa0572820-mRNA-1:three_prime_utr;Parent=Msa0572820-mRNA-1
Gene Sequence

>Msa0572820

ATGACAACAGCTTTCTTCACAGTTCCAACACCTCAACATTATCATCACGTTCAATTGTACAAACCAAAAAAATCATGGCCAGCTACTAAGATATTTGTTCCTCCCACACTATGCTCTCCAACTTCACTCATTTCTTCTGCACCAGATGATGAACTTGCTGTTTCTGATCAATCAGAATTCTCCACTAAACAGAGCGGTTGCAAAGCATGTGGAAACGAAGAAATTGAGAAAGGATGCAATGGTGAGGGTAGGATGCAGGGTGGTATTGCAACAGTTCCTGGCTTTGGCTGGTGGCCTATAAAGGCATACAGGCCATGTCCTGGATTTGTGGCTTCTGGTGGTAGGTACAGACGACAGGGACAAAGCATGGACGAGGTTGTCTCCGGTAGTGGCAAAATTAAAACACCAACTGCAACTGACTCCAAGTCAAGTAACAAAAAGGATGGATCGAACAAATTGAAGAGCTAA

Protein sequence

>Msa0572820

MTTAFFTVPTPQHYHHVQLYKPKKSWPATKIFVPPTLCSPTSLISSAPDDELAVSDQSEFSTKQSGCKACGNEEIEKGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDEVVSGSGKIKTPTATDSKSSNKKDGSNKLKS*