AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1188560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188560 MtrunA17_Chr8g0356311 97.816 412 9 0 1 412 1 412 0.0 832
Msa1188560 MtrunA17_Chr2g0309701 65.625 416 121 6 1 412 4 401 0.0 537
Msa1188560 MtrunA17_Chr7g0254941 53.548 155 68 2 5 156 9 162 5.67e-49 169
Msa1188560 MtrunA17_Chr7g0254941 51.807 83 40 0 329 411 231 313 2.92e-22 96.7
Msa1188560 MtrunA17_Chr8g0356911 32.353 170 99 2 3 158 4 171 5.58e-24 100
Msa1188560 MtrunA17_Chr7g0233321 38.000 150 86 4 3 146 74 222 1.52e-23 100
Msa1188560 MtrunA17_Chr1g0175941 35.000 160 98 2 3 156 16 175 5.56e-22 98.6
Msa1188560 MtrunA17_Chr2g0279271 37.584 149 88 3 3 146 116 264 1.15e-20 93.2
Msa1188560 MtrunA17_Chr2g0279251 34.437 151 91 3 3 146 88 237 5.30e-18 85.1
Msa1188560 MtrunA17_Chr4g0050351 34.899 149 91 4 3 146 125 272 1.15e-17 84.3
Msa1188560 MtrunA17_Chr2g0279261 32.450 151 94 5 3 146 110 259 7.18e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188560 AT1G79340.1 66.509 424 124 6 1 412 1 418 0.0 556
Msa1188560 AT1G79330.1 65.714 420 126 6 1 412 1 410 0.0 549
Msa1188560 AT1G79310.1 55.687 422 158 9 1 412 1 403 4.05e-158 452
Msa1188560 AT1G79320.1 57.246 414 129 6 1 412 1 368 1.55e-157 449
Msa1188560 AT1G16420.1 41.570 433 179 10 1 412 1 380 1.07e-97 297
Msa1188560 AT5G04200.1 36.516 419 156 12 1 411 6 322 1.38e-72 231
Msa1188560 AT1G02170.1 38.255 149 86 4 3 146 80 227 1.32e-23 101
Msa1188560 AT4G25110.2 37.162 148 88 3 3 146 116 262 1.17e-22 99.8
Msa1188560 AT4G25110.1 36.913 149 88 4 3 146 116 263 9.71e-22 97.1
Msa1188560 AT5G64240.2 34.228 149 92 3 3 146 90 237 2.56e-18 86.3
Msa1188560 AT5G64240.1 34.228 149 92 3 3 146 90 237 2.71e-18 85.5

Find 123 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGGTTGTTTCAATGATT+TGG 0.268898 8_1:+28887145 None:intergenic
GATATACTTCAGCAGAAAAC+TGG 0.278819 8_1:-28885831 Msa1188560:CDS
ATAAGCATTAGCTGCATTTC+CGG 0.302115 8_1:+28885458 None:intergenic
TTCATAAACTTCTTCACTTT+AGG 0.312797 8_1:+28885741 None:intergenic
AGGGGATTTCATGTCCCTTC+AGG 0.322536 8_1:-28885957 Msa1188560:CDS
GGTGGACAAGGTGGGATATT+GGG 0.325642 8_1:-28885681 Msa1188560:CDS
CTGCTGTTTGTTCATTATAG+TGG 0.327931 8_1:-28886856 Msa1188560:CDS
ATGAAGAAACAAATGAAGAT+AGG 0.350793 8_1:-28885911 Msa1188560:CDS
GGAAATGCAGCTAATGCTTA+TGG 0.373990 8_1:-28885456 Msa1188560:CDS
GAACATTCTGGATCCGGCTT+TGG 0.378094 8_1:-28886026 Msa1188560:CDS
AGGTGGACAAGGTGGGATAT+TGG 0.378468 8_1:-28885682 Msa1188560:CDS
TATTAACATAAATATTCCTT+TGG 0.392500 8_1:+28885077 None:intergenic
TCATATCTGTTGGTACAAAC+TGG 0.407851 8_1:-28885013 Msa1188560:three_prime_UTR
AAGGGAGAAGAGGAACATTC+TGG 0.411416 8_1:-28886038 Msa1188560:CDS
TTTCTTCATCCCTGTGTGTA+TGG 0.414592 8_1:+28885925 None:intergenic
GTCGGAGCTGGTCAGATCTT+CGG 0.416923 8_1:-28886890 Msa1188560:CDS
GGATCCGGCTTTGGATTGTC+AGG 0.420861 8_1:-28886017 Msa1188560:CDS
CCCACTTCCGTCTCCATGGC+AGG 0.428897 8_1:+28885588 None:intergenic
GACAAGCATCTGCTGAAGTC+TGG 0.432339 8_1:+28885484 None:intergenic
CACCTTCACCACCTCCATGC+TGG 0.437332 8_1:+28885700 None:intergenic
GTCGTATGTTAATGTGTGTT+TGG 0.438620 8_1:-28885115 Msa1188560:three_prime_UTR
CAAAACAGTGATGTCATCTT+CGG 0.443836 8_1:+28886969 None:intergenic
AGCTTTCAGCAATGCAATAC+AGG 0.451961 8_1:-28885433 Msa1188560:CDS
ATGAAATCCCCTTGACTCAA+TGG 0.455345 8_1:+28885968 None:intergenic
TATGATTATTAAAATGATAG+TGG 0.457923 8_1:+28885031 None:intergenic
ACTCGTCTTCCTGCTGAAAC+CGG 0.462010 8_1:-28886826 Msa1188560:CDS
TGATGATTTCAAGGAATTTG+TGG 0.462771 8_1:-28886159 Msa1188560:CDS
TCAGCAGATGCTTGTCCTGC+CGG 0.466394 8_1:-28885477 Msa1188560:CDS
ACCGGAGAGGATGATGATAC+TGG 0.478656 8_1:-28886808 Msa1188560:CDS
CAGATAGGAGAGAGCACAAA+GGG 0.484810 8_1:-28886056 Msa1188560:CDS
GATTGTCAGGCTTTCTGCAT+AGG 0.485272 8_1:-28886004 Msa1188560:CDS
GTGAACAGATGATGATTTCA+AGG 0.489198 8_1:-28886168 Msa1188560:intron
GAAGAGGAACATTCTGGATC+CGG 0.491474 8_1:-28886032 Msa1188560:CDS
CGTCTTATGTTCTTTCCTGT+CGG 0.492887 8_1:+28886919 None:intergenic
TGAAGAAACAAATGAAGATA+GGG 0.494506 8_1:-28885910 Msa1188560:CDS
AAAACATATCAGCACAAGAA+AGG 0.502276 8_1:+28885282 None:intergenic
GCCTGCCATGGAGACGGAAG+TGG 0.502627 8_1:-28885589 Msa1188560:CDS
CTCATCAGAATCCCACCGCT+TGG 0.506927 8_1:+28885522 None:intergenic
AGGTGGGATATTGGGAATGG+TGG 0.508525 8_1:-28885673 Msa1188560:CDS
TCATCCTCTCCGGTTTCAGC+AGG 0.511272 8_1:+28886817 None:intergenic
GACGATGAATGTTGCTCCAA+AGG 0.511442 8_1:-28885093 Msa1188560:three_prime_UTR
TTTCAAGGAATTTGTGGATG+GGG 0.511520 8_1:-28886153 Msa1188560:CDS
GAAGAAGCTAAGGAGCAGAT+AGG 0.515777 8_1:-28886071 Msa1188560:CDS
TCATCGTACACGGAGCCGAC+AGG 0.517561 8_1:-28886934 Msa1188560:CDS
GGTGGTGAAGGTGGACAAGG+TGG 0.521742 8_1:-28885690 Msa1188560:CDS
TCCCACATGGAGTGAAGAAT+AGG 0.524773 8_1:-28885878 Msa1188560:CDS
ACCAGTATCATCATCCTCTC+CGG 0.525146 8_1:+28886807 None:intergenic
CTGCTGAAGTATATCAATGA+GGG 0.525441 8_1:+28885839 None:intergenic
AGAGAGAAGCTACAGAAAGA+TGG 0.525591 8_1:-28885354 Msa1188560:CDS
CTCCAGCATGGAGGTGGTGA+AGG 0.526322 8_1:-28885702 Msa1188560:CDS
ACTTCCCACTTCCGTCTCCA+TGG 0.527397 8_1:+28885584 None:intergenic
GGGAAAGAAAATATAGATGT+TGG 0.529307 8_1:-28885810 Msa1188560:CDS
ATTTCAAGGAATTTGTGGAT+GGG 0.534026 8_1:-28886154 Msa1188560:CDS
CTGGTCAGATCTTCGGAGGA+TGG 0.535257 8_1:-28886883 Msa1188560:CDS
GCATTAGCTGCATTTCCGGC+AGG 0.539676 8_1:+28885462 None:intergenic
GGAGGTGGTGAAGGTGGACA+AGG 0.539731 8_1:-28885693 Msa1188560:CDS
AAATGCTTGATCGAACGTTA+CGG 0.540516 8_1:-28886997 Msa1188560:CDS
AACAAGCTCCAGCATGGAGG+TGG 0.540605 8_1:-28885708 Msa1188560:CDS
TGAGGATGCCATTGAGTCAA+GGG 0.541659 8_1:-28885976 Msa1188560:CDS
AGTAAGCATGAAGTATATGC+TGG 0.543669 8_1:-28885564 Msa1188560:CDS
TGCAATACAGGCTATAATTG+AGG 0.544373 8_1:-28885421 Msa1188560:CDS
CGTCTGTGTGTGTTTCTCCA+TGG 0.546679 8_1:-28885142 Msa1188560:three_prime_UTR
GATTTCAAGGAATTTGTGGA+TGG 0.550385 8_1:-28886155 Msa1188560:CDS
TCTGATATGAATCTCATCAC+TGG 0.553185 8_1:-28886763 Msa1188560:intron
AAGACGTGTTCTGTCGGAGC+TGG 0.553482 8_1:-28886902 Msa1188560:CDS
TGCAAAGCCTGCCATGGAGA+CGG 0.557128 8_1:-28885595 Msa1188560:CDS
AGAGAGCACAAAGGGAGAAG+AGG 0.560245 8_1:-28886048 Msa1188560:CDS
TGATCACTGCAATAGAGTCC+TGG 0.562515 8_1:+28885318 None:intergenic
TTTGTCATTCTATCATGTTG+TGG 0.562645 8_1:+28887189 None:intergenic
ATATACTTCAGCAGAAAACT+GGG 0.563796 8_1:-28885830 Msa1188560:CDS
CAGCATGGAGGTGGTGAAGG+TGG 0.564016 8_1:-28885699 Msa1188560:CDS
TTGAGGATGCCATTGAGTCA+AGG 0.570714 8_1:-28885977 Msa1188560:CDS
GATGGATTCACTCAAAAGCC+AGG 0.574901 8_1:-28885336 Msa1188560:CDS
ATGGGGTTCCTAGAGGATGT+AGG 0.576033 8_1:-28886136 Msa1188560:CDS
TGGCTTGATTGAAGAAGCTA+AGG 0.577289 8_1:-28886081 Msa1188560:CDS
ATACTCGGAGCTTATTCTCA+AGG 0.577748 8_1:-28885379 Msa1188560:CDS
GTGGTGAAGGTGGACAAGGT+GGG 0.577935 8_1:-28885689 Msa1188560:CDS
AAGCTGAATGATAATGATGA+GGG 0.577946 8_1:-28885621 Msa1188560:CDS
GGTGGGATATTGGGAATGGT+GGG 0.579754 8_1:-28885672 Msa1188560:CDS
GTGATGAGATTCATATCAGA+AGG 0.580568 8_1:+28886766 None:intergenic
TGATGGTGCAATTACATACT+CGG 0.584306 8_1:-28885394 Msa1188560:CDS
AAAGCCTGACAATCCAAAGC+CGG 0.589166 8_1:+28886013 None:intergenic
AAAGCTGAATGATAATGATG+AGG 0.590743 8_1:-28885622 Msa1188560:CDS
ATGGTCAGCCTACATCCTCT+AGG 0.591604 8_1:+28886128 None:intergenic
ATCTTGAACAAGCTCCAGCA+TGG 0.591703 8_1:-28885714 Msa1188560:CDS
GGGATATGCAAAGCCTGCCA+TGG 0.591792 8_1:-28885601 Msa1188560:CDS
CTTTCTGCATAGGAAAGTTG+AGG 0.592352 8_1:-28885994 Msa1188560:CDS
GACCTATTCTTCACTCCATG+TGG 0.610109 8_1:+28885876 None:intergenic
CCTGCCATGGAGACGGAAGT+GGG 0.610405 8_1:-28885588 Msa1188560:CDS
ACAAGGTGGGATATTGGGAA+TGG 0.615477 8_1:-28885676 Msa1188560:CDS
GAACATAAGACGTGTTCTGT+CGG 0.616617 8_1:-28886908 Msa1188560:CDS
TCTGCTGAAGTATATCAATG+AGG 0.620784 8_1:+28885838 None:intergenic
GATGCGTAAACGACGTGTGG+AGG 0.622173 8_1:-28887026 Msa1188560:CDS
TTTGTTCATTATAGTGGACA+CGG 0.624924 8_1:-28886850 Msa1188560:CDS
AGCGGTGGGATTCTGATGAG+CGG 0.625209 8_1:-28885519 Msa1188560:CDS
ATATCAATGAGGGTTGAAAG+TGG 0.625536 8_1:+28885849 None:intergenic
TTGTTCATTATAGTGGACAC+GGG 0.633684 8_1:-28886849 Msa1188560:CDS
TCTGATTCATGCCACAGTGG+TGG 0.633718 8_1:-28886101 Msa1188560:CDS
GATTGCGTCGCCATACACAC+AGG 0.633924 8_1:-28885935 Msa1188560:CDS
TATGGCGACGCAATCCTGAA+GGG 0.638425 8_1:+28885943 None:intergenic
GCAGATAGGAGAGAGCACAA+AGG 0.640959 8_1:-28886057 Msa1188560:CDS
GAGGATGCGTAAACGACGTG+TGG 0.642474 8_1:-28887029 Msa1188560:CDS
ACCTATTCTTCACTCCATGT+GGG 0.644192 8_1:+28885877 None:intergenic
GTGGCATGAATCAGATACAA+TGG 0.644776 8_1:+28886109 None:intergenic
ATATAGATGTTGGTCAACTG+AGG 0.645754 8_1:-28885800 Msa1188560:CDS
GCTATAATTGAGGAGACTGA+TGG 0.648617 8_1:-28885411 Msa1188560:CDS
GGAGCTGGTCAGATCTTCGG+AGG 0.651252 8_1:-28886887 Msa1188560:CDS
TTTGTGGATGGGGTTCCTAG+AGG 0.655242 8_1:-28886143 Msa1188560:CDS
GAGGATGCCATTGAGTCAAG+GGG 0.656525 8_1:-28885975 Msa1188560:CDS
ATTAACATACGACTATACCA+TGG 0.661282 8_1:+28885125 None:intergenic
GGAACAAAAGCAGAGTTACG+AGG 0.662090 8_1:-28887048 Msa1188560:CDS
AGGGATATCGAACTCCCACA+TGG 0.666782 8_1:-28885891 Msa1188560:CDS
TTGATCGGAATCAACTACCC+AGG 0.668541 8_1:-28887069 Msa1188560:CDS
ATTGCGTCGCCATACACACA+GGG 0.681076 8_1:-28885934 Msa1188560:CDS
CATGGAGAAACACACACAGA+CGG 0.685044 8_1:+28885143 None:intergenic
CGACACGGATTCATCGTACA+CGG 0.691286 8_1:-28886944 Msa1188560:CDS
TCTTCCTGCTGAAACCGGAG+AGG 0.694590 8_1:-28886821 Msa1188560:CDS
TCAAAGCGCGGTCTTCCAAG+CGG 0.707343 8_1:-28885537 Msa1188560:CDS
ACAAGAAAGGATCATCAACA+TGG 0.709272 8_1:+28885295 None:intergenic
TTGAACAAGCTCCAGCATGG+AGG 0.724624 8_1:-28885711 Msa1188560:CDS
TATGCTGGATCGTCAAAGCG+CGG 0.728471 8_1:-28885549 Msa1188560:CDS
CTTCAATCAAGCCACCACTG+TGG 0.744555 8_1:+28886090 None:intergenic
GTATCTGATTCATGCCACAG+TGG 0.772525 8_1:-28886104 Msa1188560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTACTATTTTTTAG+AGG + chr8_1:28887174-28887193 None:intergenic 10.0%
!!! TATTTTTTACTATTTTTTAG+AGG + chr8_1:28887174-28887193 None:intergenic 10.0%
!!! AATGTTTAATTTTGTGATTT+TGG - chr8_1:28885511-28885530 Msa1188560:CDS 15.0%
!! TTTAGTATACATGAATATAA+AGG - chr8_1:28885806-28885825 Msa1188560:CDS 15.0%
!! TATTAACATAAATATTCCTT+TGG + chr8_1:28887084-28887103 None:intergenic 15.0%
!! TATGATTATTAAAATGATAG+TGG + chr8_1:28887130-28887149 None:intergenic 15.0%
!!! ATTTTAATAATCATATCTGT+TGG - chr8_1:28887135-28887154 Msa1188560:five_prime_UTR 15.0%
!!! AATGTTTAATTTTGTGATTT+TGG - chr8_1:28885511-28885530 Msa1188560:CDS 15.0%
!! TTTAGTATACATGAATATAA+AGG - chr8_1:28885806-28885825 Msa1188560:CDS 15.0%
!! TATTAACATAAATATTCCTT+TGG + chr8_1:28887084-28887103 None:intergenic 15.0%
!! TATGATTATTAAAATGATAG+TGG + chr8_1:28887130-28887149 None:intergenic 15.0%
!!! ATTTTAATAATCATATCTGT+TGG - chr8_1:28887135-28887154 Msa1188560:five_prime_UTR 15.0%
!! AGAGAAAAAGGTAAATAAAA+AGG + chr8_1:28885447-28885466 None:intergenic 20.0%
!! AAATAAAAACAGAGAGAAAA+AGG + chr8_1:28885459-28885478 None:intergenic 20.0%
!!! TTTGATTTGATTTGATGATA+AGG - chr8_1:28885625-28885644 Msa1188560:CDS 20.0%
!! TCATTCAAAAAGAGAATAAT+GGG - chr8_1:28886903-28886922 Msa1188560:CDS 20.0%
!! AGAGAAAAAGGTAAATAAAA+AGG + chr8_1:28885447-28885466 None:intergenic 20.0%
!! AAATAAAAACAGAGAGAAAA+AGG + chr8_1:28885459-28885478 None:intergenic 20.0%
!!! TTTGATTTGATTTGATGATA+AGG - chr8_1:28885625-28885644 Msa1188560:CDS 20.0%
!! TCATTCAAAAAGAGAATAAT+GGG - chr8_1:28886903-28886922 Msa1188560:CDS 20.0%
!! AAAAGGTTGTTTCAATGATT+TGG + chr8_1:28885016-28885035 None:intergenic 25.0%
! GAAGATGAAGAAAAAGAAAA+AGG + chr8_1:28885033-28885052 None:intergenic 25.0%
!!! AGGAGTAGTTTTTTTTTTCT+TGG + chr8_1:28885427-28885446 None:intergenic 25.0%
! CTCAATTAAAATTCGAACAT+TGG + chr8_1:28885773-28885792 None:intergenic 25.0%
! ATGAATATAAAGGAACAGAA+GGG - chr8_1:28885816-28885835 Msa1188560:CDS 25.0%
!! ATGTCTGGAATCTTTATATA+GGG - chr8_1:28885898-28885917 Msa1188560:CDS 25.0%
! ATGTTATTAGTGAGTAGTAA+TGG - chr8_1:28885929-28885948 Msa1188560:CDS 25.0%
! ATGAAGAAACAAATGAAGAT+AGG - chr8_1:28886247-28886266 Msa1188560:intron 25.0%
! TGAAGAAACAAATGAAGATA+GGG - chr8_1:28886248-28886267 Msa1188560:intron 25.0%
!!! CTACACTTTTTGATGTTTTT+GGG - chr8_1:28886382-28886401 Msa1188560:intron 25.0%
!!! TACACTTTTTGATGTTTTTG+GGG - chr8_1:28886383-28886402 Msa1188560:intron 25.0%
! TTCATAAACTTCTTCACTTT+AGG + chr8_1:28886420-28886439 None:intergenic 25.0%
! CTCATTCAAAAAGAGAATAA+TGG - chr8_1:28886902-28886921 Msa1188560:CDS 25.0%
!! AAAAGGTTGTTTCAATGATT+TGG + chr8_1:28885016-28885035 None:intergenic 25.0%
! GAAGATGAAGAAAAAGAAAA+AGG + chr8_1:28885033-28885052 None:intergenic 25.0%
!!! AGGAGTAGTTTTTTTTTTCT+TGG + chr8_1:28885427-28885446 None:intergenic 25.0%
! CTCAATTAAAATTCGAACAT+TGG + chr8_1:28885773-28885792 None:intergenic 25.0%
! ATGAATATAAAGGAACAGAA+GGG - chr8_1:28885816-28885835 Msa1188560:CDS 25.0%
!! ATGTCTGGAATCTTTATATA+GGG - chr8_1:28885898-28885917 Msa1188560:CDS 25.0%
! ATGTTATTAGTGAGTAGTAA+TGG - chr8_1:28885929-28885948 Msa1188560:CDS 25.0%
! ATGAAGAAACAAATGAAGAT+AGG - chr8_1:28886247-28886266 Msa1188560:intron 25.0%
! TGAAGAAACAAATGAAGATA+GGG - chr8_1:28886248-28886267 Msa1188560:intron 25.0%
!!! CTACACTTTTTGATGTTTTT+GGG - chr8_1:28886382-28886401 Msa1188560:intron 25.0%
!!! TACACTTTTTGATGTTTTTG+GGG - chr8_1:28886383-28886402 Msa1188560:intron 25.0%
! TTCATAAACTTCTTCACTTT+AGG + chr8_1:28886420-28886439 None:intergenic 25.0%
! CTCATTCAAAAAGAGAATAA+TGG - chr8_1:28886902-28886921 Msa1188560:CDS 25.0%
! ACGAAAAAAGCTGTATTGAT+CGG - chr8_1:28885074-28885093 Msa1188560:three_prime_UTR 30.0%
!! TTTGTTCATTATAGTGGACA+CGG - chr8_1:28885308-28885327 Msa1188560:CDS 30.0%
!! TAAAATTCGAACATTGGTTC+CGG + chr8_1:28885767-28885786 None:intergenic 30.0%
CATGAATATAAAGGAACAGA+AGG - chr8_1:28885815-28885834 Msa1188560:CDS 30.0%
! CATGTCTGGAATCTTTATAT+AGG - chr8_1:28885897-28885916 Msa1188560:CDS 30.0%
TGATGATTTCAAGGAATTTG+TGG - chr8_1:28885999-28886018 Msa1188560:CDS 30.0%
ATTTCAAGGAATTTGTGGAT+GGG - chr8_1:28886004-28886023 Msa1188560:CDS 30.0%
ATATACTTCAGCAGAAAACT+GGG - chr8_1:28886328-28886347 Msa1188560:intron 30.0%
GGGAAAGAAAATATAGATGT+TGG - chr8_1:28886348-28886367 Msa1188560:intron 30.0%
! CCAAAAACATCAAAAAGTGT+AGG + chr8_1:28886384-28886403 None:intergenic 30.0%
!! CCTACACTTTTTGATGTTTT+TGG - chr8_1:28886381-28886400 Msa1188560:intron 30.0%
! CTTTTGCTTAAGAAACTCTT+GGG + chr8_1:28886520-28886539 None:intergenic 30.0%
! AAAGCTGAATGATAATGATG+AGG - chr8_1:28886536-28886555 Msa1188560:intron 30.0%
! AAGCTGAATGATAATGATGA+GGG - chr8_1:28886537-28886556 Msa1188560:intron 30.0%
AAAACATATCAGCACAAGAA+AGG + chr8_1:28886879-28886898 None:intergenic 30.0%
! TTTTGTAACAAACTTGACGA+TGG - chr8_1:28886972-28886991 Msa1188560:CDS 30.0%
ATTAACATACGACTATACCA+TGG + chr8_1:28887036-28887055 None:intergenic 30.0%
! ACGAAAAAAGCTGTATTGAT+CGG - chr8_1:28885074-28885093 Msa1188560:three_prime_UTR 30.0%
!! TTTGTTCATTATAGTGGACA+CGG - chr8_1:28885308-28885327 Msa1188560:CDS 30.0%
!! TAAAATTCGAACATTGGTTC+CGG + chr8_1:28885767-28885786 None:intergenic 30.0%
CATGAATATAAAGGAACAGA+AGG - chr8_1:28885815-28885834 Msa1188560:CDS 30.0%
! CATGTCTGGAATCTTTATAT+AGG - chr8_1:28885897-28885916 Msa1188560:CDS 30.0%
TGATGATTTCAAGGAATTTG+TGG - chr8_1:28885999-28886018 Msa1188560:CDS 30.0%
ATTTCAAGGAATTTGTGGAT+GGG - chr8_1:28886004-28886023 Msa1188560:CDS 30.0%
ATATACTTCAGCAGAAAACT+GGG - chr8_1:28886328-28886347 Msa1188560:intron 30.0%
GGGAAAGAAAATATAGATGT+TGG - chr8_1:28886348-28886367 Msa1188560:intron 30.0%
! CCAAAAACATCAAAAAGTGT+AGG + chr8_1:28886384-28886403 None:intergenic 30.0%
!! CCTACACTTTTTGATGTTTT+TGG - chr8_1:28886381-28886400 Msa1188560:intron 30.0%
! CTTTTGCTTAAGAAACTCTT+GGG + chr8_1:28886520-28886539 None:intergenic 30.0%
! AAAGCTGAATGATAATGATG+AGG - chr8_1:28886536-28886555 Msa1188560:intron 30.0%
! AAGCTGAATGATAATGATGA+GGG - chr8_1:28886537-28886556 Msa1188560:intron 30.0%
AAAACATATCAGCACAAGAA+AGG + chr8_1:28886879-28886898 None:intergenic 30.0%
! TTTTGTAACAAACTTGACGA+TGG - chr8_1:28886972-28886991 Msa1188560:CDS 30.0%
ATTAACATACGACTATACCA+TGG + chr8_1:28887036-28887055 None:intergenic 30.0%
!!! ACAGCTTTTTTCGTCATTGT+TGG + chr8_1:28885068-28885087 None:intergenic 35.0%
AAATGCTTGATCGAACGTTA+CGG - chr8_1:28885161-28885180 Msa1188560:three_prime_UTR 35.0%
CAAAACAGTGATGTCATCTT+CGG + chr8_1:28885192-28885211 None:intergenic 35.0%
! CTGCTGTTTGTTCATTATAG+TGG - chr8_1:28885302-28885321 Msa1188560:CDS 35.0%
!! TTGTTCATTATAGTGGACAC+GGG - chr8_1:28885309-28885328 Msa1188560:CDS 35.0%
GTGATGAGATTCATATCAGA+AGG + chr8_1:28885395-28885414 None:intergenic 35.0%
TCTGATATGAATCTCATCAC+TGG - chr8_1:28885395-28885414 Msa1188560:CDS 35.0%
! TTTTGTGATTTTGGATCCTG+TGG - chr8_1:28885520-28885539 Msa1188560:CDS 35.0%
! TTTGATGATAAGGAATCTCC+AGG - chr8_1:28885635-28885654 Msa1188560:CDS 35.0%
! TTGATGATAAGGAATCTCCA+GGG - chr8_1:28885636-28885655 Msa1188560:CDS 35.0%
AGTTAAGATTGTCTCCATAG+TGG - chr8_1:28885718-28885737 Msa1188560:CDS 35.0%
GTGAACAGATGATGATTTCA+AGG - chr8_1:28885990-28886009 Msa1188560:CDS 35.0%
GATTTCAAGGAATTTGTGGA+TGG - chr8_1:28886003-28886022 Msa1188560:CDS 35.0%
TTTCAAGGAATTTGTGGATG+GGG - chr8_1:28886005-28886024 Msa1188560:CDS 35.0%
ATATCAATGAGGGTTGAAAG+TGG + chr8_1:28886312-28886331 None:intergenic 35.0%
CTGCTGAAGTATATCAATGA+GGG + chr8_1:28886322-28886341 None:intergenic 35.0%
TCTGCTGAAGTATATCAATG+AGG + chr8_1:28886323-28886342 None:intergenic 35.0%
GATATACTTCAGCAGAAAAC+TGG - chr8_1:28886327-28886346 Msa1188560:intron 35.0%
ATATAGATGTTGGTCAACTG+AGG - chr8_1:28886358-28886377 Msa1188560:intron 35.0%
! GCTTTTGCTTAAGAAACTCT+TGG + chr8_1:28886521-28886540 None:intergenic 35.0%
AGTAAGCATGAAGTATATGC+TGG - chr8_1:28886594-28886613 Msa1188560:intron 35.0%
ATAAGCATTAGCTGCATTTC+CGG + chr8_1:28886703-28886722 None:intergenic 35.0%
TGCAATACAGGCTATAATTG+AGG - chr8_1:28886737-28886756 Msa1188560:intron 35.0%
! TGATGGTGCAATTACATACT+CGG - chr8_1:28886764-28886783 Msa1188560:CDS 35.0%
ACAAGAAAGGATCATCAACA+TGG + chr8_1:28886866-28886885 None:intergenic 35.0%
GTCGTATGTTAATGTGTGTT+TGG - chr8_1:28887043-28887062 Msa1188560:CDS 35.0%
TCATATCTGTTGGTACAAAC+TGG - chr8_1:28887145-28887164 Msa1188560:five_prime_UTR 35.0%
!!! ACAGCTTTTTTCGTCATTGT+TGG + chr8_1:28885068-28885087 None:intergenic 35.0%
AAATGCTTGATCGAACGTTA+CGG - chr8_1:28885161-28885180 Msa1188560:three_prime_UTR 35.0%
CAAAACAGTGATGTCATCTT+CGG + chr8_1:28885192-28885211 None:intergenic 35.0%
! CTGCTGTTTGTTCATTATAG+TGG - chr8_1:28885302-28885321 Msa1188560:CDS 35.0%
!! TTGTTCATTATAGTGGACAC+GGG - chr8_1:28885309-28885328 Msa1188560:CDS 35.0%
GTGATGAGATTCATATCAGA+AGG + chr8_1:28885395-28885414 None:intergenic 35.0%
TCTGATATGAATCTCATCAC+TGG - chr8_1:28885395-28885414 Msa1188560:CDS 35.0%
! TTTTGTGATTTTGGATCCTG+TGG - chr8_1:28885520-28885539 Msa1188560:CDS 35.0%
! TTTGATGATAAGGAATCTCC+AGG - chr8_1:28885635-28885654 Msa1188560:CDS 35.0%
! TTGATGATAAGGAATCTCCA+GGG - chr8_1:28885636-28885655 Msa1188560:CDS 35.0%
AGTTAAGATTGTCTCCATAG+TGG - chr8_1:28885718-28885737 Msa1188560:CDS 35.0%
GTGAACAGATGATGATTTCA+AGG - chr8_1:28885990-28886009 Msa1188560:CDS 35.0%
GATTTCAAGGAATTTGTGGA+TGG - chr8_1:28886003-28886022 Msa1188560:CDS 35.0%
TTTCAAGGAATTTGTGGATG+GGG - chr8_1:28886005-28886024 Msa1188560:CDS 35.0%
ATATCAATGAGGGTTGAAAG+TGG + chr8_1:28886312-28886331 None:intergenic 35.0%
CTGCTGAAGTATATCAATGA+GGG + chr8_1:28886322-28886341 None:intergenic 35.0%
TCTGCTGAAGTATATCAATG+AGG + chr8_1:28886323-28886342 None:intergenic 35.0%
GATATACTTCAGCAGAAAAC+TGG - chr8_1:28886327-28886346 Msa1188560:intron 35.0%
ATATAGATGTTGGTCAACTG+AGG - chr8_1:28886358-28886377 Msa1188560:intron 35.0%
! GCTTTTGCTTAAGAAACTCT+TGG + chr8_1:28886521-28886540 None:intergenic 35.0%
AGTAAGCATGAAGTATATGC+TGG - chr8_1:28886594-28886613 Msa1188560:intron 35.0%
ATAAGCATTAGCTGCATTTC+CGG + chr8_1:28886703-28886722 None:intergenic 35.0%
TGCAATACAGGCTATAATTG+AGG - chr8_1:28886737-28886756 Msa1188560:intron 35.0%
! TGATGGTGCAATTACATACT+CGG - chr8_1:28886764-28886783 Msa1188560:CDS 35.0%
ACAAGAAAGGATCATCAACA+TGG + chr8_1:28886866-28886885 None:intergenic 35.0%
GTCGTATGTTAATGTGTGTT+TGG - chr8_1:28887043-28887062 Msa1188560:CDS 35.0%
TCATATCTGTTGGTACAAAC+TGG - chr8_1:28887145-28887164 Msa1188560:five_prime_UTR 35.0%
!!! GCTTTTTTCGTCATTGTTGG+TGG + chr8_1:28885065-28885084 None:intergenic 40.0%
!! GTAACTCTGCTTTTGTTCCT+GGG + chr8_1:28885109-28885128 None:intergenic 40.0%
!!! CATCACTGTTTTGATCGACA+CGG - chr8_1:28885199-28885218 Msa1188560:three_prime_UTR 40.0%
CGTCTTATGTTCTTTCCTGT+CGG + chr8_1:28885242-28885261 None:intergenic 40.0%
GAACATAAGACGTGTTCTGT+CGG - chr8_1:28885250-28885269 Msa1188560:three_prime_UTR 40.0%
GTGGCATGAATCAGATACAA+TGG + chr8_1:28886052-28886071 None:intergenic 40.0%
TGGCTTGATTGAAGAAGCTA+AGG - chr8_1:28886077-28886096 Msa1188560:CDS 40.0%
CTTTCTGCATAGGAAAGTTG+AGG - chr8_1:28886164-28886183 Msa1188560:intron 40.0%
ATGAAATCCCCTTGACTCAA+TGG + chr8_1:28886193-28886212 None:intergenic 40.0%
TTTCTTCATCCCTGTGTGTA+TGG + chr8_1:28886236-28886255 None:intergenic 40.0%
ACCTATTCTTCACTCCATGT+GGG + chr8_1:28886284-28886303 None:intergenic 40.0%
GGAAATGCAGCTAATGCTTA+TGG - chr8_1:28886702-28886721 Msa1188560:intron 40.0%
AGCTTTCAGCAATGCAATAC+AGG - chr8_1:28886725-28886744 Msa1188560:intron 40.0%
GCTATAATTGAGGAGACTGA+TGG - chr8_1:28886747-28886766 Msa1188560:intron 40.0%
ATACTCGGAGCTTATTCTCA+AGG - chr8_1:28886779-28886798 Msa1188560:CDS 40.0%
AGAGAGAAGCTACAGAAAGA+TGG - chr8_1:28886804-28886823 Msa1188560:CDS 40.0%
!!! GCTTTTTTCGTCATTGTTGG+TGG + chr8_1:28885065-28885084 None:intergenic 40.0%
!! GTAACTCTGCTTTTGTTCCT+GGG + chr8_1:28885109-28885128 None:intergenic 40.0%
!!! CATCACTGTTTTGATCGACA+CGG - chr8_1:28885199-28885218 Msa1188560:three_prime_UTR 40.0%
CGTCTTATGTTCTTTCCTGT+CGG + chr8_1:28885242-28885261 None:intergenic 40.0%
GAACATAAGACGTGTTCTGT+CGG - chr8_1:28885250-28885269 Msa1188560:three_prime_UTR 40.0%
GTGGCATGAATCAGATACAA+TGG + chr8_1:28886052-28886071 None:intergenic 40.0%
TGGCTTGATTGAAGAAGCTA+AGG - chr8_1:28886077-28886096 Msa1188560:CDS 40.0%
CTTTCTGCATAGGAAAGTTG+AGG - chr8_1:28886164-28886183 Msa1188560:intron 40.0%
ATGAAATCCCCTTGACTCAA+TGG + chr8_1:28886193-28886212 None:intergenic 40.0%
TTTCTTCATCCCTGTGTGTA+TGG + chr8_1:28886236-28886255 None:intergenic 40.0%
ACCTATTCTTCACTCCATGT+GGG + chr8_1:28886284-28886303 None:intergenic 40.0%
GGAAATGCAGCTAATGCTTA+TGG - chr8_1:28886702-28886721 Msa1188560:intron 40.0%
AGCTTTCAGCAATGCAATAC+AGG - chr8_1:28886725-28886744 Msa1188560:intron 40.0%
GCTATAATTGAGGAGACTGA+TGG - chr8_1:28886747-28886766 Msa1188560:intron 40.0%
ATACTCGGAGCTTATTCTCA+AGG - chr8_1:28886779-28886798 Msa1188560:CDS 40.0%
AGAGAGAAGCTACAGAAAGA+TGG - chr8_1:28886804-28886823 Msa1188560:CDS 40.0%
TTGATCGGAATCAACTACCC+AGG - chr8_1:28885089-28885108 Msa1188560:three_prime_UTR 45.0%
!! CGTAACTCTGCTTTTGTTCC+TGG + chr8_1:28885110-28885129 None:intergenic 45.0%
GGAACAAAAGCAGAGTTACG+AGG - chr8_1:28885110-28885129 Msa1188560:three_prime_UTR 45.0%
ACCAGTATCATCATCCTCTC+CGG + chr8_1:28885354-28885373 None:intergenic 45.0%
CAACTTTCAGCTGTAACCAC+AGG + chr8_1:28885539-28885558 None:intergenic 45.0%
TGATAAGGAATCTCCAGGGA+CGG - chr8_1:28885640-28885659 Msa1188560:CDS 45.0%
! GTCTCCATAGTGGAATTGAC+CGG - chr8_1:28885728-28885747 Msa1188560:CDS 45.0%
GATTCCGGTCAATTCCACTA+TGG + chr8_1:28885735-28885754 None:intergenic 45.0%
!! AATTCGAACATTGGTTCCGG+AGG + chr8_1:28885764-28885783 None:intergenic 45.0%
TTTGTAGTCTCGTGCATGTC+TGG - chr8_1:28885883-28885902 Msa1188560:CDS 45.0%
GTATCTGATTCATGCCACAG+TGG - chr8_1:28886054-28886073 Msa1188560:CDS 45.0%
GAAGAAGCTAAGGAGCAGAT+AGG - chr8_1:28886087-28886106 Msa1188560:CDS 45.0%
! CAGATAGGAGAGAGCACAAA+GGG - chr8_1:28886102-28886121 Msa1188560:CDS 45.0%
AAGGGAGAAGAGGAACATTC+TGG - chr8_1:28886120-28886139 Msa1188560:CDS 45.0%
GAAGAGGAACATTCTGGATC+CGG - chr8_1:28886126-28886145 Msa1188560:CDS 45.0%
AAAGCCTGACAATCCAAAGC+CGG + chr8_1:28886148-28886167 None:intergenic 45.0%
GATTGTCAGGCTTTCTGCAT+AGG - chr8_1:28886154-28886173 Msa1188560:CDS 45.0%
TTGAGGATGCCATTGAGTCA+AGG - chr8_1:28886181-28886200 Msa1188560:intron 45.0%
TGAGGATGCCATTGAGTCAA+GGG - chr8_1:28886182-28886201 Msa1188560:intron 45.0%
TCCCACATGGAGTGAAGAAT+AGG - chr8_1:28886280-28886299 Msa1188560:intron 45.0%
GACCTATTCTTCACTCCATG+TGG + chr8_1:28886285-28886304 None:intergenic 45.0%
ATCTTGAACAAGCTCCAGCA+TGG - chr8_1:28886444-28886463 Msa1188560:intron 45.0%
ACAAGGTGGGATATTGGGAA+TGG - chr8_1:28886482-28886501 Msa1188560:intron 45.0%
! GATGGATTCACTCAAAAGCC+AGG - chr8_1:28886822-28886841 Msa1188560:CDS 45.0%
TGATCACTGCAATAGAGTCC+TGG + chr8_1:28886843-28886862 None:intergenic 45.0%
CATGGAGAAACACACACAGA+CGG + chr8_1:28887018-28887037 None:intergenic 45.0%
GACGATGAATGTTGCTCCAA+AGG - chr8_1:28887065-28887084 Msa1188560:CDS 45.0%
TTGATCGGAATCAACTACCC+AGG - chr8_1:28885089-28885108 Msa1188560:three_prime_UTR 45.0%
!! CGTAACTCTGCTTTTGTTCC+TGG + chr8_1:28885110-28885129 None:intergenic 45.0%
GGAACAAAAGCAGAGTTACG+AGG - chr8_1:28885110-28885129 Msa1188560:three_prime_UTR 45.0%
ACCAGTATCATCATCCTCTC+CGG + chr8_1:28885354-28885373 None:intergenic 45.0%
CAACTTTCAGCTGTAACCAC+AGG + chr8_1:28885539-28885558 None:intergenic 45.0%
TGATAAGGAATCTCCAGGGA+CGG - chr8_1:28885640-28885659 Msa1188560:CDS 45.0%
! GTCTCCATAGTGGAATTGAC+CGG - chr8_1:28885728-28885747 Msa1188560:CDS 45.0%
GATTCCGGTCAATTCCACTA+TGG + chr8_1:28885735-28885754 None:intergenic 45.0%
!! AATTCGAACATTGGTTCCGG+AGG + chr8_1:28885764-28885783 None:intergenic 45.0%
TTTGTAGTCTCGTGCATGTC+TGG - chr8_1:28885883-28885902 Msa1188560:CDS 45.0%
GTATCTGATTCATGCCACAG+TGG - chr8_1:28886054-28886073 Msa1188560:CDS 45.0%
GAAGAAGCTAAGGAGCAGAT+AGG - chr8_1:28886087-28886106 Msa1188560:CDS 45.0%
! CAGATAGGAGAGAGCACAAA+GGG - chr8_1:28886102-28886121 Msa1188560:CDS 45.0%
AAGGGAGAAGAGGAACATTC+TGG - chr8_1:28886120-28886139 Msa1188560:CDS 45.0%
GAAGAGGAACATTCTGGATC+CGG - chr8_1:28886126-28886145 Msa1188560:CDS 45.0%
AAAGCCTGACAATCCAAAGC+CGG + chr8_1:28886148-28886167 None:intergenic 45.0%
GATTGTCAGGCTTTCTGCAT+AGG - chr8_1:28886154-28886173 Msa1188560:CDS 45.0%
TTGAGGATGCCATTGAGTCA+AGG - chr8_1:28886181-28886200 Msa1188560:intron 45.0%
TGAGGATGCCATTGAGTCAA+GGG - chr8_1:28886182-28886201 Msa1188560:intron 45.0%
TCCCACATGGAGTGAAGAAT+AGG - chr8_1:28886280-28886299 Msa1188560:intron 45.0%
GACCTATTCTTCACTCCATG+TGG + chr8_1:28886285-28886304 None:intergenic 45.0%
ATCTTGAACAAGCTCCAGCA+TGG - chr8_1:28886444-28886463 Msa1188560:intron 45.0%
ACAAGGTGGGATATTGGGAA+TGG - chr8_1:28886482-28886501 Msa1188560:intron 45.0%
! GATGGATTCACTCAAAAGCC+AGG - chr8_1:28886822-28886841 Msa1188560:CDS 45.0%
TGATCACTGCAATAGAGTCC+TGG + chr8_1:28886843-28886862 None:intergenic 45.0%
CATGGAGAAACACACACAGA+CGG + chr8_1:28887018-28887037 None:intergenic 45.0%
GACGATGAATGTTGCTCCAA+AGG - chr8_1:28887065-28887084 Msa1188560:CDS 45.0%
CGACACGGATTCATCGTACA+CGG - chr8_1:28885214-28885233 Msa1188560:three_prime_UTR 50.0%
ACTCGTCTTCCTGCTGAAAC+CGG - chr8_1:28885332-28885351 Msa1188560:CDS 50.0%
ACCGGAGAGGATGATGATAC+TGG - chr8_1:28885350-28885369 Msa1188560:CDS 50.0%
CTTGTAGAGAATTCCGTCCC+TGG + chr8_1:28885656-28885675 None:intergenic 50.0%
TTCCGGAGGTTGTGAGATTC+CGG + chr8_1:28885750-28885769 None:intergenic 50.0%
AAGGAACAGAAGGGAACGTG+TGG - chr8_1:28885825-28885844 Msa1188560:CDS 50.0%
TTTGTGGATGGGGTTCCTAG+AGG - chr8_1:28886015-28886034 Msa1188560:CDS 50.0%
ATGGGGTTCCTAGAGGATGT+AGG - chr8_1:28886022-28886041 Msa1188560:CDS 50.0%
ATGGTCAGCCTACATCCTCT+AGG + chr8_1:28886033-28886052 None:intergenic 50.0%
TCTGATTCATGCCACAGTGG+TGG - chr8_1:28886057-28886076 Msa1188560:CDS 50.0%
CTTCAATCAAGCCACCACTG+TGG + chr8_1:28886071-28886090 None:intergenic 50.0%
! GCAGATAGGAGAGAGCACAA+AGG - chr8_1:28886101-28886120 Msa1188560:CDS 50.0%
! AGAGAGCACAAAGGGAGAAG+AGG - chr8_1:28886110-28886129 Msa1188560:CDS 50.0%
GAACATTCTGGATCCGGCTT+TGG - chr8_1:28886132-28886151 Msa1188560:CDS 50.0%
GAGGATGCCATTGAGTCAAG+GGG - chr8_1:28886183-28886202 Msa1188560:intron 50.0%
AGGGGATTTCATGTCCCTTC+AGG - chr8_1:28886201-28886220 Msa1188560:intron 50.0%
TATGGCGACGCAATCCTGAA+GGG + chr8_1:28886218-28886237 None:intergenic 50.0%
ATTGCGTCGCCATACACACA+GGG - chr8_1:28886224-28886243 Msa1188560:intron 50.0%
AGGGATATCGAACTCCCACA+TGG - chr8_1:28886267-28886286 Msa1188560:intron 50.0%
TTGAACAAGCTCCAGCATGG+AGG - chr8_1:28886447-28886466 Msa1188560:intron 50.0%
AGGTGGACAAGGTGGGATAT+TGG - chr8_1:28886476-28886495 Msa1188560:intron 50.0%
GGTGGACAAGGTGGGATATT+GGG - chr8_1:28886477-28886496 Msa1188560:intron 50.0%
AGGTGGGATATTGGGAATGG+TGG - chr8_1:28886485-28886504 Msa1188560:intron 50.0%
GGTGGGATATTGGGAATGGT+GGG - chr8_1:28886486-28886505 Msa1188560:intron 50.0%
TATGCTGGATCGTCAAAGCG+CGG - chr8_1:28886609-28886628 Msa1188560:intron 50.0%
GACAAGCATCTGCTGAAGTC+TGG + chr8_1:28886677-28886696 None:intergenic 50.0%
CGTCTGTGTGTGTTTCTCCA+TGG - chr8_1:28887016-28887035 Msa1188560:CDS 50.0%
CGACACGGATTCATCGTACA+CGG - chr8_1:28885214-28885233 Msa1188560:three_prime_UTR 50.0%
ACTCGTCTTCCTGCTGAAAC+CGG - chr8_1:28885332-28885351 Msa1188560:CDS 50.0%
ACCGGAGAGGATGATGATAC+TGG - chr8_1:28885350-28885369 Msa1188560:CDS 50.0%
CTTGTAGAGAATTCCGTCCC+TGG + chr8_1:28885656-28885675 None:intergenic 50.0%
TTCCGGAGGTTGTGAGATTC+CGG + chr8_1:28885750-28885769 None:intergenic 50.0%
AAGGAACAGAAGGGAACGTG+TGG - chr8_1:28885825-28885844 Msa1188560:CDS 50.0%
TTTGTGGATGGGGTTCCTAG+AGG - chr8_1:28886015-28886034 Msa1188560:CDS 50.0%
ATGGGGTTCCTAGAGGATGT+AGG - chr8_1:28886022-28886041 Msa1188560:CDS 50.0%
ATGGTCAGCCTACATCCTCT+AGG + chr8_1:28886033-28886052 None:intergenic 50.0%
TCTGATTCATGCCACAGTGG+TGG - chr8_1:28886057-28886076 Msa1188560:CDS 50.0%
CTTCAATCAAGCCACCACTG+TGG + chr8_1:28886071-28886090 None:intergenic 50.0%
! GCAGATAGGAGAGAGCACAA+AGG - chr8_1:28886101-28886120 Msa1188560:CDS 50.0%
! AGAGAGCACAAAGGGAGAAG+AGG - chr8_1:28886110-28886129 Msa1188560:CDS 50.0%
GAACATTCTGGATCCGGCTT+TGG - chr8_1:28886132-28886151 Msa1188560:CDS 50.0%
GAGGATGCCATTGAGTCAAG+GGG - chr8_1:28886183-28886202 Msa1188560:intron 50.0%
AGGGGATTTCATGTCCCTTC+AGG - chr8_1:28886201-28886220 Msa1188560:intron 50.0%
TATGGCGACGCAATCCTGAA+GGG + chr8_1:28886218-28886237 None:intergenic 50.0%
ATTGCGTCGCCATACACACA+GGG - chr8_1:28886224-28886243 Msa1188560:intron 50.0%
AGGGATATCGAACTCCCACA+TGG - chr8_1:28886267-28886286 Msa1188560:intron 50.0%
TTGAACAAGCTCCAGCATGG+AGG - chr8_1:28886447-28886466 Msa1188560:intron 50.0%
AGGTGGACAAGGTGGGATAT+TGG - chr8_1:28886476-28886495 Msa1188560:intron 50.0%
GGTGGACAAGGTGGGATATT+GGG - chr8_1:28886477-28886496 Msa1188560:intron 50.0%
AGGTGGGATATTGGGAATGG+TGG - chr8_1:28886485-28886504 Msa1188560:intron 50.0%
GGTGGGATATTGGGAATGGT+GGG - chr8_1:28886486-28886505 Msa1188560:intron 50.0%
TATGCTGGATCGTCAAAGCG+CGG - chr8_1:28886609-28886628 Msa1188560:intron 50.0%
GACAAGCATCTGCTGAAGTC+TGG + chr8_1:28886677-28886696 None:intergenic 50.0%
CGTCTGTGTGTGTTTCTCCA+TGG - chr8_1:28887016-28887035 Msa1188560:CDS 50.0%
GAGGATGCGTAAACGACGTG+TGG - chr8_1:28885129-28885148 Msa1188560:three_prime_UTR 55.0%
GATGCGTAAACGACGTGTGG+AGG - chr8_1:28885132-28885151 Msa1188560:three_prime_UTR 55.0%
AAGACGTGTTCTGTCGGAGC+TGG - chr8_1:28885256-28885275 Msa1188560:three_prime_UTR 55.0%
GTCGGAGCTGGTCAGATCTT+CGG - chr8_1:28885268-28885287 Msa1188560:three_prime_UTR 55.0%
CTGGTCAGATCTTCGGAGGA+TGG - chr8_1:28885275-28885294 Msa1188560:exon 55.0%
TCTTCCTGCTGAAACCGGAG+AGG - chr8_1:28885337-28885356 Msa1188560:CDS 55.0%
TCATCCTCTCCGGTTTCAGC+AGG + chr8_1:28885344-28885363 None:intergenic 55.0%
GACCGGAATCTCACAACCTC+CGG - chr8_1:28885745-28885764 Msa1188560:CDS 55.0%
!! GGATCCGGCTTTGGATTGTC+AGG - chr8_1:28886141-28886160 Msa1188560:CDS 55.0%
GTATGGCGACGCAATCCTGA+AGG + chr8_1:28886219-28886238 None:intergenic 55.0%
GATTGCGTCGCCATACACAC+AGG - chr8_1:28886223-28886242 Msa1188560:intron 55.0%
AACAAGCTCCAGCATGGAGG+TGG - chr8_1:28886450-28886469 Msa1188560:intron 55.0%
GTGGTGAAGGTGGACAAGGT+GGG - chr8_1:28886469-28886488 Msa1188560:intron 55.0%
GGGATATGCAAAGCCTGCCA+TGG - chr8_1:28886557-28886576 Msa1188560:intron 55.0%
TGCAAAGCCTGCCATGGAGA+CGG - chr8_1:28886563-28886582 Msa1188560:intron 55.0%
ACTTCCCACTTCCGTCTCCA+TGG + chr8_1:28886577-28886596 None:intergenic 55.0%
TCAAAGCGCGGTCTTCCAAG+CGG - chr8_1:28886621-28886640 Msa1188560:intron 55.0%
CTCATCAGAATCCCACCGCT+TGG + chr8_1:28886639-28886658 None:intergenic 55.0%
AGCGGTGGGATTCTGATGAG+CGG - chr8_1:28886639-28886658 Msa1188560:intron 55.0%
TCAGCAGATGCTTGTCCTGC+CGG - chr8_1:28886681-28886700 Msa1188560:intron 55.0%
GCATTAGCTGCATTTCCGGC+AGG + chr8_1:28886699-28886718 None:intergenic 55.0%
GAGGATGCGTAAACGACGTG+TGG - chr8_1:28885129-28885148 Msa1188560:three_prime_UTR 55.0%
GATGCGTAAACGACGTGTGG+AGG - chr8_1:28885132-28885151 Msa1188560:three_prime_UTR 55.0%
AAGACGTGTTCTGTCGGAGC+TGG - chr8_1:28885256-28885275 Msa1188560:three_prime_UTR 55.0%
GTCGGAGCTGGTCAGATCTT+CGG - chr8_1:28885268-28885287 Msa1188560:three_prime_UTR 55.0%
CTGGTCAGATCTTCGGAGGA+TGG - chr8_1:28885275-28885294 Msa1188560:exon 55.0%
TCTTCCTGCTGAAACCGGAG+AGG - chr8_1:28885337-28885356 Msa1188560:CDS 55.0%
TCATCCTCTCCGGTTTCAGC+AGG + chr8_1:28885344-28885363 None:intergenic 55.0%
GACCGGAATCTCACAACCTC+CGG - chr8_1:28885745-28885764 Msa1188560:CDS 55.0%
!! GGATCCGGCTTTGGATTGTC+AGG - chr8_1:28886141-28886160 Msa1188560:CDS 55.0%
GTATGGCGACGCAATCCTGA+AGG + chr8_1:28886219-28886238 None:intergenic 55.0%
GATTGCGTCGCCATACACAC+AGG - chr8_1:28886223-28886242 Msa1188560:intron 55.0%
AACAAGCTCCAGCATGGAGG+TGG - chr8_1:28886450-28886469 Msa1188560:intron 55.0%
GTGGTGAAGGTGGACAAGGT+GGG - chr8_1:28886469-28886488 Msa1188560:intron 55.0%
GGGATATGCAAAGCCTGCCA+TGG - chr8_1:28886557-28886576 Msa1188560:intron 55.0%
TGCAAAGCCTGCCATGGAGA+CGG - chr8_1:28886563-28886582 Msa1188560:intron 55.0%
ACTTCCCACTTCCGTCTCCA+TGG + chr8_1:28886577-28886596 None:intergenic 55.0%
TCAAAGCGCGGTCTTCCAAG+CGG - chr8_1:28886621-28886640 Msa1188560:intron 55.0%
CTCATCAGAATCCCACCGCT+TGG + chr8_1:28886639-28886658 None:intergenic 55.0%
AGCGGTGGGATTCTGATGAG+CGG - chr8_1:28886639-28886658 Msa1188560:intron 55.0%
TCAGCAGATGCTTGTCCTGC+CGG - chr8_1:28886681-28886700 Msa1188560:intron 55.0%
GCATTAGCTGCATTTCCGGC+AGG + chr8_1:28886699-28886718 None:intergenic 55.0%
TCATCGTACACGGAGCCGAC+AGG - chr8_1:28885224-28885243 Msa1188560:three_prime_UTR 60.0%
GGAGCTGGTCAGATCTTCGG+AGG - chr8_1:28885271-28885290 Msa1188560:exon 60.0%
CTCCAGCATGGAGGTGGTGA+AGG - chr8_1:28886456-28886475 Msa1188560:intron 60.0%
CACCTTCACCACCTCCATGC+TGG + chr8_1:28886461-28886480 None:intergenic 60.0%
CAGCATGGAGGTGGTGAAGG+TGG - chr8_1:28886459-28886478 Msa1188560:intron 60.0%
GGAGGTGGTGAAGGTGGACA+AGG - chr8_1:28886465-28886484 Msa1188560:intron 60.0%
GGTGGTGAAGGTGGACAAGG+TGG - chr8_1:28886468-28886487 Msa1188560:intron 60.0%
CCTGCCATGGAGACGGAAGT+GGG - chr8_1:28886570-28886589 Msa1188560:intron 60.0%
TCATCGTACACGGAGCCGAC+AGG - chr8_1:28885224-28885243 Msa1188560:three_prime_UTR 60.0%
GGAGCTGGTCAGATCTTCGG+AGG - chr8_1:28885271-28885290 Msa1188560:exon 60.0%
CTCCAGCATGGAGGTGGTGA+AGG - chr8_1:28886456-28886475 Msa1188560:intron 60.0%
CACCTTCACCACCTCCATGC+TGG + chr8_1:28886461-28886480 None:intergenic 60.0%
CAGCATGGAGGTGGTGAAGG+TGG - chr8_1:28886459-28886478 Msa1188560:intron 60.0%
GGAGGTGGTGAAGGTGGACA+AGG - chr8_1:28886465-28886484 Msa1188560:intron 60.0%
GGTGGTGAAGGTGGACAAGG+TGG - chr8_1:28886468-28886487 Msa1188560:intron 60.0%
CCTGCCATGGAGACGGAAGT+GGG - chr8_1:28886570-28886589 Msa1188560:intron 60.0%
GCCTGCCATGGAGACGGAAG+TGG - chr8_1:28886569-28886588 Msa1188560:intron 65.0%
CCCACTTCCGTCTCCATGGC+AGG + chr8_1:28886573-28886592 None:intergenic 65.0%
AAGCGCGGTCTTCCAAGCGG+TGG - chr8_1:28886624-28886643 Msa1188560:intron 65.0%
AGCGCGGTCTTCCAAGCGGT+GGG - chr8_1:28886625-28886644 Msa1188560:intron 65.0%
GCCTGCCATGGAGACGGAAG+TGG - chr8_1:28886569-28886588 Msa1188560:intron 65.0%
CCCACTTCCGTCTCCATGGC+AGG + chr8_1:28886573-28886592 None:intergenic 65.0%
AAGCGCGGTCTTCCAAGCGG+TGG - chr8_1:28886624-28886643 Msa1188560:intron 65.0%
AGCGCGGTCTTCCAAGCGGT+GGG - chr8_1:28886625-28886644 Msa1188560:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 28884971 28887209 28884971 ID=Msa1188560;Name=Msa1188560
chr8_1 mRNA 28884971 28887209 28884971 ID=Msa1188560-mRNA-1;Parent=Msa1188560;Name=Msa1188560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=100|1|1|1|1|1|2|319|412
chr8_1 exon 28884971 28886182 28884971 ID=Msa1188560-mRNA-1:exon:10140;Parent=Msa1188560-mRNA-1
chr8_1 exon 28886764 28887209 28886764 ID=Msa1188560-mRNA-1:exon:10139;Parent=Msa1188560-mRNA-1
chr8_1 five_prime_UTR 28887110 28887209 28887110 ID=Msa1188560-mRNA-1:five_prime_utr;Parent=Msa1188560-mRNA-1
chr8_1 CDS 28886764 28887109 28886764 ID=Msa1188560-mRNA-1:cds;Parent=Msa1188560-mRNA-1
chr8_1 CDS 28885290 28886182 28885290 ID=Msa1188560-mRNA-1:cds;Parent=Msa1188560-mRNA-1
chr8_1 three_prime_UTR 28884971 28885289 28884971 ID=Msa1188560-mRNA-1:three_prime_utr;Parent=Msa1188560-mRNA-1
Gene Sequence

>Msa1188560

ATGACGAAAAAAGCTGTATTGATCGGAATCAACTACCCAGGAACAAAAGCAGAGTTACGAGGATGCGTAAACGACGTGTGGAGGATGCACAAATGCTTGATCGAACGTTACGGTTTTTCCGAAGATGACATCACTGTTTTGATCGACACGGATTCATCGTACACGGAGCCGACAGGAAAGAACATAAGACGTGTTCTGTCGGAGCTGGTCAGATCTTCGGAGGATGGTGATCTGCTGTTTGTTCATTATAGTGGACACGGGACTCGTCTTCCTGCTGAAACCGGAGAGGATGATGATACTGGTTTTGATGAATGTATTGTTCCTTCTGATATGAATCTCATCACTGATGATGATTTCAAGGAATTTGTGGATGGGGTTCCTAGAGGATGTAGGCTGACCATTGTATCTGATTCATGCCACAGTGGTGGCTTGATTGAAGAAGCTAAGGAGCAGATAGGAGAGAGCACAAAGGGAGAAGAGGAACATTCTGGATCCGGCTTTGGATTGTCAGGCTTTCTGCATAGGAAAGTTGAGGATGCCATTGAGTCAAGGGGATTTCATGTCCCTTCAGGATTGCGTCGCCATACACACAGGGATGAAGAAACAAATGAAGATAGGGATATCGAACTCCCACATGGAGTGAAGAATAGGTCTCTGCCACTTTCAACCCTCATTGATATACTTCAGCAGAAAACTGGGAAAGAAAATATAGATGTTGGTCAACTGAGGCCTACACTTTTTGATGTTTTTGGGGAAGATGCTAGTCCTAAAGTGAAGAAGTTTATGAAAGTCATCTTGAACAAGCTCCAGCATGGAGGTGGTGAAGGTGGACAAGGTGGGATATTGGGAATGGTGGGTAGTCTTGCCCAAGAGTTTCTTAAGCAAAAGCTGAATGATAATGATGAGGGATATGCAAAGCCTGCCATGGAGACGGAAGTGGGAAGTAAGCATGAAGTATATGCTGGATCGTCAAAGCGCGGTCTTCCAAGCGGTGGGATTCTGATGAGCGGCTGTCAGACAGACCAGACTTCAGCAGATGCTTGTCCTGCCGGAAATGCAGCTAATGCTTATGGAGCTTTCAGCAATGCAATACAGGCTATAATTGAGGAGACTGATGGTGCAATTACATACTCGGAGCTTATTCTCAAGGCTAGAGAGAAGCTACAGAAAGATGGATTCACTCAAAAGCCAGGACTCTATTGCAGTGATCACCATGTTGATGATCCTTTCTTGTGCTGA

Protein sequence

>Msa1188560

MTKKAVLIGINYPGTKAELRGCVNDVWRMHKCLIERYGFSEDDITVLIDTDSSYTEPTGKNIRRVLSELVRSSEDGDLLFVHYSGHGTRLPAETGEDDDTGFDECIVPSDMNLITDDDFKEFVDGVPRGCRLTIVSDSCHSGGLIEEAKEQIGESTKGEEEHSGSGFGLSGFLHRKVEDAIESRGFHVPSGLRRHTHRDEETNEDRDIELPHGVKNRSLPLSTLIDILQQKTGKENIDVGQLRPTLFDVFGEDASPKVKKFMKVILNKLQHGGGEGGQGGILGMVGSLAQEFLKQKLNDNDEGYAKPAMETEVGSKHEVYAGSSKRGLPSGGILMSGCQTDQTSADACPAGNAANAYGAFSNAIQAIIEETDGAITYSELILKAREKLQKDGFTQKPGLYCSDHHVDDPFLC*