AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343580 MtrunA17_Chr7g0266211 96.528 432 8 3 1 426 1 431 0.0 842
Msa1343580 MtrunA17_Chr8g0355121 34.758 351 137 11 37 383 23 285 3.57e-42 151
Msa1343580 MtrunA17_Chr3g0080341 35.511 352 155 11 38 389 20 299 4.88e-40 145
Msa1343580 MtrunA17_Chr4g0044771 33.981 412 149 18 43 401 22 363 4.98e-40 147
Msa1343580 MtrunA17_Chr2g0321381 49.275 138 61 4 43 180 26 154 1.40e-33 127
Msa1343580 MtrunA17_Chr2g0321381 46.154 143 48 4 261 388 161 289 6.94e-19 86.7
Msa1343580 MtrunA17_Chr2g0321411 52.381 126 47 3 293 414 165 281 2.93e-30 118
Msa1343580 MtrunA17_Chr2g0321411 47.059 136 59 5 44 176 13 138 1.82e-28 113
Msa1343580 MtrunA17_Chr3g0133971 46.269 134 47 4 44 173 32 144 1.92e-23 101
Msa1343580 MtrunA17_Chr3g0133971 46.043 139 67 3 275 407 283 419 3.46e-22 98.2
Msa1343580 MtrunA17_Chr6g0460301 38.571 140 76 3 41 177 18 150 1.13e-17 83.6
Msa1343580 MtrunA17_Chr7g0254991 67.164 67 20 2 325 390 233 298 1.47e-17 83.2
Msa1343580 MtrunA17_Chr7g0254991 35.606 132 68 3 44 173 21 137 5.15e-15 75.5
Msa1343580 MtrunA17_Chr4g0051101 37.097 124 65 3 281 397 71 188 2.02e-15 74.7
Msa1343580 MtrunA17_Chr1g0201751 53.030 66 31 0 335 400 157 222 9.35e-13 67.8
Msa1343580 MtrunA17_Chr5g0440841 58.621 58 24 0 326 383 184 241 3.62e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343580 AT2G36270.1 45.455 484 164 13 1 426 1 442 3.15e-110 332
Msa1343580 AT2G36270.2 45.455 484 164 13 1 426 1 442 3.15e-110 332
Msa1343580 AT2G36270.3 45.815 454 146 13 1 396 1 412 1.72e-102 312
Msa1343580 AT1G45249.7 36.453 406 179 15 44 402 41 414 5.88e-45 162
Msa1343580 AT1G45249.6 36.453 406 179 15 44 402 41 414 5.88e-45 162
Msa1343580 AT1G45249.3 35.012 417 181 16 44 402 26 410 9.40e-40 147
Msa1343580 AT1G49720.1 30.946 391 223 10 29 398 6 370 3.55e-30 120
Msa1343580 AT1G49720.3 30.946 391 223 10 29 398 6 370 3.55e-30 120
Msa1343580 AT3G44460.1 52.555 137 54 5 38 173 35 161 4.31e-29 116
Msa1343580 AT3G44460.1 53.211 109 48 1 316 424 224 329 6.69e-21 93.6
Msa1343580 AT5G42910.1 27.053 414 229 14 26 416 7 370 4.28e-25 106
Msa1343580 AT3G56850.1 46.939 147 63 5 27 173 5 136 7.52e-25 103
Msa1343580 AT3G56850.1 67.797 59 18 1 326 383 211 269 1.26e-15 77.4
Msa1343580 AT1G45249.1 50.794 126 50 4 285 402 278 399 5.51e-24 103
Msa1343580 AT1G49720.2 39.634 164 70 6 29 176 6 156 1.86e-22 99.0
Msa1343580 AT1G49720.2 55.556 72 32 0 326 397 298 369 2.04e-16 81.3
Msa1343580 AT2G41070.5 35.789 190 77 7 25 205 3 156 1.30e-20 90.9
Msa1343580 AT2G41070.5 67.241 58 19 0 326 383 177 234 6.81e-16 77.4
Msa1343580 AT2G41070.3 35.789 190 77 7 25 205 3 156 2.71e-20 90.5
Msa1343580 AT2G41070.3 64.615 65 22 1 326 390 177 240 2.73e-16 79.0
Msa1343580 AT2G41070.1 35.789 190 77 7 25 205 3 156 2.71e-20 90.5
Msa1343580 AT2G41070.1 64.615 65 22 1 326 390 177 240 2.73e-16 79.0
Msa1343580 AT2G41070.2 35.789 190 77 7 25 205 3 156 2.71e-20 90.5
Msa1343580 AT2G41070.2 64.615 65 22 1 326 390 177 240 2.73e-16 79.0
Msa1343580 AT2G41070.4 35.789 190 77 7 25 205 12 165 3.37e-20 90.5
Msa1343580 AT2G41070.4 64.615 65 22 1 326 390 186 249 2.67e-16 79.0
Msa1343580 AT3G19290.4 40.426 141 78 3 38 173 34 173 5.15e-20 92.0
Msa1343580 AT3G19290.4 45.614 114 49 3 284 397 309 409 9.08e-18 85.1
Msa1343580 AT3G19290.3 40.426 141 78 3 38 173 34 173 6.08e-20 92.0
Msa1343580 AT3G19290.3 46.667 120 51 3 284 403 309 415 3.38e-19 89.7
Msa1343580 AT3G19290.1 40.426 141 78 3 38 173 34 173 6.39e-20 92.0
Msa1343580 AT3G19290.1 46.667 120 50 4 284 403 309 414 4.97e-18 86.3
Msa1343580 AT3G19290.5 40.426 141 78 3 38 173 34 173 6.39e-20 92.0
Msa1343580 AT3G19290.5 46.667 120 50 4 284 403 309 414 4.97e-18 86.3
Msa1343580 AT3G19290.2 40.426 141 78 3 38 173 34 173 8.86e-20 91.3
Msa1343580 AT4G34000.1 38.095 168 73 6 35 174 24 188 2.04e-19 90.5
Msa1343580 AT4G34000.1 57.333 75 32 0 324 398 357 431 3.65e-19 89.7
Msa1343580 AT4G34000.4 38.095 168 73 6 35 174 24 188 2.04e-19 90.5
Msa1343580 AT4G34000.4 57.333 75 32 0 324 398 357 431 3.65e-19 89.7
Msa1343580 AT4G34000.2 38.095 168 73 6 35 174 24 188 2.04e-19 90.5
Msa1343580 AT4G34000.2 57.333 75 32 0 324 398 357 431 3.65e-19 89.7
Msa1343580 AT4G34000.3 38.182 165 71 6 38 174 27 188 2.18e-19 90.5
Msa1343580 AT4G34000.3 53.659 82 31 1 324 398 357 438 3.18e-17 84.0
Msa1343580 AT5G44080.1 44.762 105 55 2 318 419 207 311 5.32e-15 75.9
Msa1343580 AT1G45249.10 52.222 90 31 4 285 366 278 363 1.56e-14 75.1
Msa1343580 AT1G45249.5 52.222 90 31 4 285 366 278 363 1.56e-14 75.1
Msa1343580 AT2G17770.2 41.026 117 51 3 266 382 69 167 3.94e-14 71.2
Msa1343580 AT1G45249.4 47.573 103 36 5 285 373 278 376 1.32e-13 72.4
Msa1343580 AT1G45249.8 47.573 103 36 5 285 373 278 376 1.32e-13 72.4
Msa1343580 AT1G45249.2 47.573 103 36 5 285 373 278 376 1.32e-13 72.4
Msa1343580 AT1G45249.9 47.573 103 36 5 285 373 278 376 1.32e-13 72.4
Msa1343580 AT1G03970.1 50.000 76 36 1 323 398 173 246 2.56e-12 67.4
Msa1343580 AT4G35900.1 33.951 162 89 6 235 389 114 264 6.84e-12 66.2

Find 152 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACTCGGGTGGTCAATT+TGG 0.166727 tig0006461:-1329 Msa1343580:CDS
CAGGAATCGATAACGAATTT+TGG 0.216092 tig0006461:+1936 None:intergenic
GTTGGAGAGCCTTCGGGTTC+GGG 0.231478 tig0006461:-1533 Msa1343580:CDS
CAGGCTGCTTCATTTGCTAT+TGG 0.248337 tig0006461:-1623 Msa1343580:CDS
GTGACAGCGGCAAGAATTTC+GGG 0.248709 tig0006461:-2102 Msa1343580:CDS
AGTTGGAGAGCCTTCGGGTT+CGG 0.262820 tig0006461:-1534 Msa1343580:CDS
GATGACATTGGAGGATTTCT+TGG 0.268533 tig0006461:-1786 Msa1343580:CDS
TGTGACAGCGGCAAGAATTT+CGG 0.276728 tig0006461:-2103 Msa1343580:CDS
TGGTTAAAGCAGGGGTAGTT+AGG 0.281516 tig0006461:-1766 Msa1343580:CDS
AATGGAGGGGCGGGCGGTTA+TGG 0.286276 tig0006461:-1422 Msa1343580:CDS
GCCATTGTAGAGTTGTTATT+AGG 0.296465 tig0006461:+1647 None:intergenic
CCGCCGCCAGCGGTTTGTTA+TGG 0.308148 tig0006461:-1458 Msa1343580:CDS
GTTGTTGCTGTTATTATTGT+TGG 0.310662 tig0006461:+2012 None:intergenic
TGTGGCAGTGGCACAAACTA+TGG 0.315000 tig0006461:-1399 Msa1343580:CDS
ACCCCTCGACAACCGACTTT+TGG 0.322363 tig0006461:-1812 Msa1343580:CDS
ACCTGTTAGTCCGGTTTCTT+CGG 0.327709 tig0006461:-1366 Msa1343580:CDS
AAAACTCGGGTGGTCAATTT+GGG 0.341515 tig0006461:-1328 Msa1343580:CDS
ACACTGCGGCGTAATGCTGC+TGG 0.344613 tig0006461:+1672 None:intergenic
TTACCTCATGCAGTGTTTAG+AGG 0.347444 tig0006461:-633 Msa1343580:intron
GGAAAACTGTTGAACAAGTT+TGG 0.348644 tig0006461:-1901 Msa1343580:CDS
TTGCTATTGGCGGCGGCGGC+GGG 0.353891 tig0006461:-1610 Msa1343580:CDS
CTCTCCACCACCCTTTCAAC+AGG 0.360473 tig0006461:+1260 None:intergenic
CACTGCGGCGTAATGCTGCT+GGG 0.364765 tig0006461:+1673 None:intergenic
TGGAGGAGTTGGAGAGCCTT+CGG 0.365531 tig0006461:-1540 Msa1343580:CDS
TCCGAAGAAACCGGACTAAC+AGG 0.372237 tig0006461:+1365 None:intergenic
GTCGAGGGTGAGTGAATATA+TGG 0.374227 tig0006461:+2144 None:intergenic
TTTGCTATTGGCGGCGGCGG+CGG 0.374673 tig0006461:-1611 Msa1343580:CDS
CTTCGGGTTCGGGGTATGTT+GGG 0.383128 tig0006461:-1523 Msa1343580:CDS
CAAACCGCTGGCGGCGGCGG+AGG 0.394088 tig0006461:+1464 None:intergenic
ACTGCTGCTGCGGCAGGTGG+TGG 0.397437 tig0006461:+1710 None:intergenic
TAGAAACTCATCCATGTTCA+TGG 0.401819 tig0006461:+2078 None:intergenic
AGAGAATTCTCAACTGAAAC+AGG 0.410221 tig0006461:-885 Msa1343580:CDS
TAAGAGAAGGTGAGATGAAT+TGG 0.412357 tig0006461:-2267 Msa1343580:CDS
CCGGTTTCTTCGGATGGGAT+TGG 0.415620 tig0006461:-1356 Msa1343580:CDS
GGAGGAGTTGGAGAGCCTTC+GGG 0.416356 tig0006461:-1539 Msa1343580:CDS
CCTTCGGGTTCGGGGTATGT+TGG 0.416821 tig0006461:-1524 Msa1343580:CDS
CACCTCCCTGTGCCACCGTT+TGG 0.419295 tig0006461:+1561 None:intergenic
AAGATCTAGAGCCAGAAAAC+AGG 0.420885 tig0006461:-1198 Msa1343580:intron
TGTTGGATGCAGCTTGTTGT+TGG 0.421539 tig0006461:+2029 None:intergenic
CGGCGTAATGCTGCTGGGGC+CGG 0.426351 tig0006461:+1678 None:intergenic
GCACAGGGAGGTGGAGGAGT+TGG 0.427569 tig0006461:-1551 Msa1343580:CDS
GTTAGTCCGGTTTCTTCGGA+TGG 0.429323 tig0006461:-1362 Msa1343580:CDS
TCATTTGCTATTGGCGGCGG+CGG 0.434400 tig0006461:-1614 Msa1343580:CDS
CCCTGTGCCACCGTTTGGTA+TGG 0.438711 tig0006461:+1566 None:intergenic
GGTGGTGGTGCTATGGCAAC+CGG 0.443970 tig0006461:+1725 None:intergenic
GAGGGAGAGTGGTGAATGGA+GGG 0.444211 tig0006461:-1436 Msa1343580:CDS
GATGGGCGGACCTGTTAGTC+CGG 0.445248 tig0006461:-1375 Msa1343580:CDS
TCAGAAAGGGATTAGCAAAC+AGG 0.447868 tig0006461:-1972 Msa1343580:CDS
ATTGATATGAATGGTTTAAG+AGG 0.448244 tig0006461:-1305 Msa1343580:CDS
GGAAGAAAGAGGATGGTTGA+TGG 0.453215 tig0006461:-1284 Msa1343580:CDS
GAGGATTTCTTGGTTAAAGC+AGG 0.456229 tig0006461:-1776 Msa1343580:CDS
GATGACACTGCTGCTGCGGC+AGG 0.456822 tig0006461:+1704 None:intergenic
TGGTGGAGAGAAGGCAGAGG+AGG 0.457363 tig0006461:-1247 Msa1343580:CDS
GACTAGGGATAGTATAGGTA+CGG 0.462211 tig0006461:-1492 Msa1343580:CDS
AATGTCATTTCTTCATCGCT+TGG 0.465109 tig0006461:-2181 Msa1343580:CDS
GCCATACCAAACGGTGGCAC+AGG 0.467096 tig0006461:-1567 Msa1343580:CDS
ACGGTGGCACAGGGAGGTGG+AGG 0.470179 tig0006461:-1557 Msa1343580:CDS
GGGCGGTTATGGTGTGGCAG+TGG 0.471720 tig0006461:-1411 Msa1343580:CDS
GGGAAGGAGAAGAAGCGATC+AGG 0.473369 tig0006461:-2216 Msa1343580:CDS
AGGGGCGGGCGGTTATGGTG+TGG 0.475144 tig0006461:-1417 Msa1343580:CDS
TAACAAACCGCTGGCGGCGG+CGG 0.477710 tig0006461:+1461 None:intergenic
CCGCCAGCGGTTTGTTATGG+AGG 0.477954 tig0006461:-1455 Msa1343580:CDS
CAAACGGTGGCACAGGGAGG+TGG 0.478151 tig0006461:-1560 Msa1343580:CDS
CGATTCCTGCACCTCTCTGC+AGG 0.479043 tig0006461:-1922 Msa1343580:CDS
GGTTGATGGTCCTGTTGAAA+GGG 0.481262 tig0006461:-1270 Msa1343580:CDS
CCAATCCCATCCGAAGAAAC+CGG 0.481309 tig0006461:+1356 None:intergenic
GGTTAAAGCAGGGGTAGTTA+GGG 0.481908 tig0006461:-1765 Msa1343580:CDS
AGAGAGGAGAAGAAGACAAC+AGG 0.484243 tig0006461:-752 Msa1343580:intron
TTAGTCCGGTTTCTTCGGAT+GGG 0.486374 tig0006461:-1361 Msa1343580:CDS
GACACTGCTGCTGCGGCAGG+TGG 0.491945 tig0006461:+1707 None:intergenic
AGGGAGAGTGGTGAATGGAG+GGG 0.491999 tig0006461:-1435 Msa1343580:CDS
GCTGCTTCATTTGCTATTGG+CGG 0.495000 tig0006461:-1620 Msa1343580:CDS
GAGAGTGGTGAATGGAGGGG+CGG 0.499932 tig0006461:-1432 Msa1343580:CDS
AGTGGCACAAACTATGGGGA+TGG 0.502987 tig0006461:-1393 Msa1343580:CDS
CAATTTGGGATTGATATGAA+TGG 0.505237 tig0006461:-1314 Msa1343580:CDS
AGAGTGGTGAATGGAGGGGC+GGG 0.505464 tig0006461:-1431 Msa1343580:CDS
TGCGGCAGGTGGTGGTGCTA+TGG 0.506524 tig0006461:+1718 None:intergenic
GGGTGGTGGAGAGAAGGCAG+AGG 0.506953 tig0006461:-1250 Msa1343580:CDS
GGAGGGAGAGTGGTGAATGG+AGG 0.509570 tig0006461:-1437 Msa1343580:CDS
CCATAACAAACCGCTGGCGG+CGG 0.510979 tig0006461:+1458 None:intergenic
CAGTTCTGCTTCTAATTCAA+CGG 0.515247 tig0006461:+922 None:intergenic
ACTTGTCTGCAGCTCAGAAA+GGG 0.519532 tig0006461:-1985 Msa1343580:CDS
CAACATTGTTGATGTTGTGA+TGG 0.520957 tig0006461:+1852 None:intergenic
GTGGCAGTGGCACAAACTAT+GGG 0.520968 tig0006461:-1398 Msa1343580:CDS
AACTTGTCTGCAGCTCAGAA+AGG 0.521964 tig0006461:-1986 Msa1343580:CDS
CGCCAAAAGTCGGTTGTCGA+GGG 0.522444 tig0006461:+1810 None:intergenic
AAGAATATGGTGGTAAGAGA+AGG 0.522714 tig0006461:-2280 None:intergenic
GCTTCATTTGCTATTGGCGG+CGG 0.528163 tig0006461:-1617 Msa1343580:CDS
TATGGAGGGAGAGTGGTGAA+TGG 0.528806 tig0006461:-1440 Msa1343580:CDS
CGCCAGCGGTTTGTTATGGA+GGG 0.528969 tig0006461:-1454 Msa1343580:CDS
ACTAGGGATAGTATAGGTAC+GGG 0.531284 tig0006461:-1491 Msa1343580:CDS
AGAAACTGAGAGGCTTAAGA+AGG 0.532363 tig0006461:-568 Msa1343580:CDS
TAACAACTCTACAATGGCTC+AGG 0.534100 tig0006461:-1642 Msa1343580:CDS
TGTTGGGAATGGTAAGACTA+GGG 0.535160 tig0006461:-1507 Msa1343580:CDS
GAATTTCGGGTCCATGAACA+TGG 0.544850 tig0006461:-2089 Msa1343580:CDS
TTTAAGAGGAAGAAAGAGGA+TGG 0.548041 tig0006461:-1291 Msa1343580:CDS
CGCTGTCACAGAGGCTGTGT+TGG 0.549331 tig0006461:+2116 None:intergenic
TCGCCAAAAGTCGGTTGTCG+AGG 0.549884 tig0006461:+1809 None:intergenic
TTGAAAGGGTGGTGGAGAGA+AGG 0.555209 tig0006461:-1256 Msa1343580:CDS
GTGGCACAAACTATGGGGAT+GGG 0.557884 tig0006461:-1392 Msa1343580:CDS
GGAACAACAGTCTGGTATGC+CGG 0.558038 tig0006461:-1744 Msa1343580:CDS
CTCCCTCCATAACAAACCGC+TGG 0.558325 tig0006461:+1452 None:intergenic
GTAGTTAGGGAACAACAGTC+TGG 0.560019 tig0006461:-1752 Msa1343580:CDS
TTCTCAACTGAAACAGGCAC+TGG 0.564684 tig0006461:-879 Msa1343580:intron
TGGTTGATGGTCCTGTTGAA+AGG 0.565970 tig0006461:-1271 Msa1343580:CDS
GGCTGTGTTGGAACTCGTCG+AGG 0.566650 tig0006461:+2128 None:intergenic
GGTTCGGGGTATGTTGGGAA+TGG 0.567692 tig0006461:-1518 Msa1343580:CDS
CAGCAGCAGTGTCATCTCAC+CGG 0.569711 tig0006461:-1697 Msa1343580:CDS
ATGGTTTAAGAGGAAGAAAG+AGG 0.570839 tig0006461:-1295 Msa1343580:CDS
TTGGAGAGCCTTCGGGTTCG+GGG 0.572733 tig0006461:-1532 Msa1343580:CDS
TGTGCCACCGTTTGGTATGG+CGG 0.573089 tig0006461:+1569 None:intergenic
AGGATTTCTTGGTTAAAGCA+GGG 0.574066 tig0006461:-1775 Msa1343580:CDS
TGATGGTCCTGTTGAAAGGG+TGG 0.574869 tig0006461:-1267 Msa1343580:CDS
TTCTTCAGGCTGAACTAGAG+AGG 0.575021 tig0006461:-768 Msa1343580:intron
GGTAAGACTAGGGATAGTAT+AGG 0.577774 tig0006461:-1497 Msa1343580:CDS
ACTGCGGCGTAATGCTGCTG+GGG 0.580500 tig0006461:+1674 None:intergenic
GTGAGATGAATTGGCAACAA+GGG 0.583790 tig0006461:-2258 Msa1343580:CDS
CCATACCAAACGGTGGCACA+GGG 0.583912 tig0006461:-1566 Msa1343580:CDS
TGGGATTGGAAACGAAAACT+CGG 0.584083 tig0006461:-1342 Msa1343580:CDS
GTAGAATCATTGCAGAGGGA+AGG 0.584321 tig0006461:-2232 Msa1343580:CDS
ATGTTGGGAATGGTAAGACT+AGG 0.593588 tig0006461:-1508 Msa1343580:CDS
GGTTGCGCCGCCATACCAAA+CGG 0.595175 tig0006461:-1576 Msa1343580:CDS
GTATCCTCCGCCGCCGCCAG+CGG 0.598153 tig0006461:-1468 Msa1343580:CDS
GTGGTGAATGGAGGGGCGGG+CGG 0.598279 tig0006461:-1428 Msa1343580:CDS
CAACACAGCCTCTGTGACAG+CGG 0.601697 tig0006461:-2115 Msa1343580:CDS
CGGCGGCGGGAATCTGAATG+TGG 0.602274 tig0006461:-1597 Msa1343580:CDS
AATGTCATCTCGCCAAAAGT+CGG 0.605885 tig0006461:+1800 None:intergenic
GTGAGATGACACTGCTGCTG+CGG 0.608010 tig0006461:+1700 None:intergenic
TGGTCCTGTTGAAAGGGTGG+TGG 0.612440 tig0006461:-1264 Msa1343580:CDS
GGAGGTAGAATCATTGCAGA+GGG 0.612581 tig0006461:-2236 Msa1343580:CDS
GGTGAGATGAATTGGCAACA+AGG 0.616844 tig0006461:-2259 Msa1343580:CDS
CGGTTGTCGAGGGGTAGACT+CGG 0.617759 tig0006461:+1820 None:intergenic
TCCTAATAACAACTCTACAA+TGG 0.627967 tig0006461:-1648 Msa1343580:CDS
GCACAAACTATGGGGATGGG+CGG 0.628434 tig0006461:-1389 Msa1343580:CDS
GGTTTGTTATGGAGGGAGAG+TGG 0.634679 tig0006461:-1447 Msa1343580:CDS
GATGAATTGGCAACAAGGGG+AGG 0.635893 tig0006461:-2254 Msa1343580:CDS
TGAGATGAATTGGCAACAAG+GGG 0.639163 tig0006461:-2257 Msa1343580:CDS
CCTCCATAACAAACCGCTGG+CGG 0.640926 tig0006461:+1455 None:intergenic
GGATTTCTTGGTTAAAGCAG+GGG 0.646725 tig0006461:-1774 Msa1343580:CDS
CCAACATACCCCGAACCCGA+AGG 0.649040 tig0006461:+1524 None:intergenic
GCCAAAAGTCGGTTGTCGAG+GGG 0.657167 tig0006461:+1811 None:intergenic
GCTGTGTTGGAACTCGTCGA+GGG 0.657810 tig0006461:+2129 None:intergenic
GGGATTGGAAACGAAAACTC+GGG 0.662976 tig0006461:-1341 Msa1343580:CDS
GGGAGGTAGAATCATTGCAG+AGG 0.672753 tig0006461:-2237 Msa1343580:CDS
TACCAAACGGTGGCACAGGG+AGG 0.683725 tig0006461:-1563 Msa1343580:CDS
TGCGCCGCCATACCAAACGG+TGG 0.683832 tig0006461:-1573 Msa1343580:CDS
TGGCAGTGGCACAAACTATG+GGG 0.694881 tig0006461:-1397 Msa1343580:CDS
ATTGGAAACGAAAACTCGGG+TGG 0.712637 tig0006461:-1338 Msa1343580:CDS
AAAGCAAAAGAGAAACTGAG+AGG 0.716117 tig0006461:-578 Msa1343580:CDS
AATTCTTGCCGCTGTCACAG+AGG 0.718674 tig0006461:+2107 None:intergenic
CTAGGGATAGTATAGGTACG+GGG 0.720083 tig0006461:-1490 Msa1343580:CDS
GTTGTTATTAGGATACACTG+CGG 0.806201 tig0006461:+1658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAAAGTATAAAATAAT+TGG + tig0006461:1664-1683 None:intergenic 10.0%
!! AGATTAAAGTATAAAATAAT+TGG + tig0006461:1664-1683 None:intergenic 10.0%
!! AAATAATTGGTTAAAATTTC+AGG + tig0006461:1651-1670 None:intergenic 15.0%
!! TATATATACATAAGAATTTG+TGG + tig0006461:1699-1718 None:intergenic 15.0%
!! TTTATATACTATTGAAGAAT+TGG - tig0006461:1740-1759 Msa1343580:CDS 15.0%
!!! CAAACATATTATTTCTAATT+TGG + tig0006461:1798-1817 None:intergenic 15.0%
!! AAATAATTGGTTAAAATTTC+AGG + tig0006461:1651-1670 None:intergenic 15.0%
!! TATATATACATAAGAATTTG+TGG + tig0006461:1699-1718 None:intergenic 15.0%
!! TTTATATACTATTGAAGAAT+TGG - tig0006461:1740-1759 Msa1343580:CDS 15.0%
!!! CAAACATATTATTTCTAATT+TGG + tig0006461:1798-1817 None:intergenic 15.0%
!!! TAATGTCTTTAAATTTTCTG+AGG + tig0006461:2124-2143 None:intergenic 20.0%
!! TAGATTTGATTCAAAACAAA+AGG + tig0006461:2152-2171 None:intergenic 20.0%
!!! TAATGTCTTTAAATTTTCTG+AGG + tig0006461:2124-2143 None:intergenic 20.0%
!! TAGATTTGATTCAAAACAAA+AGG + tig0006461:2152-2171 None:intergenic 20.0%
! ATGAGTTTCTAAGTAGTATT+TGG - tig0006461:755-774 Msa1343580:CDS 25.0%
! ATTGATATGAATGGTTTAAG+AGG - tig0006461:1516-1535 Msa1343580:CDS 25.0%
! GAAAGAAAATTGTGTTACAA+AGG + tig0006461:1860-1879 None:intergenic 25.0%
! CTGTAATAGTTAATGTTGTT+TGG + tig0006461:1973-1992 None:intergenic 25.0%
! ATTATAGTTTAGACCATCAT+TGG + tig0006461:2098-2117 None:intergenic 25.0%
! ATGAGTTTCTAAGTAGTATT+TGG - tig0006461:755-774 Msa1343580:CDS 25.0%
! ATTGATATGAATGGTTTAAG+AGG - tig0006461:1516-1535 Msa1343580:CDS 25.0%
! GAAAGAAAATTGTGTTACAA+AGG + tig0006461:1860-1879 None:intergenic 25.0%
! CTGTAATAGTTAATGTTGTT+TGG + tig0006461:1973-1992 None:intergenic 25.0%
! ATTATAGTTTAGACCATCAT+TGG + tig0006461:2098-2117 None:intergenic 25.0%
! GTTGTTGCTGTTATTATTGT+TGG + tig0006461:812-831 None:intergenic 30.0%
TCCTAATAACAACTCTACAA+TGG - tig0006461:1173-1192 Msa1343580:intron 30.0%
! CAATTTGGGATTGATATGAA+TGG - tig0006461:1507-1526 Msa1343580:CDS 30.0%
! ATTTTCTTTCTTGCTTATGC+AGG - tig0006461:1870-1889 Msa1343580:CDS 30.0%
! TCATGCTTCTTTTATTCTTC+AGG - tig0006461:2039-2058 Msa1343580:CDS 30.0%
! GTTGTTGCTGTTATTATTGT+TGG + tig0006461:812-831 None:intergenic 30.0%
TCCTAATAACAACTCTACAA+TGG - tig0006461:1173-1192 Msa1343580:intron 30.0%
! CAATTTGGGATTGATATGAA+TGG - tig0006461:1507-1526 Msa1343580:CDS 30.0%
! ATTTTCTTTCTTGCTTATGC+AGG - tig0006461:1870-1889 Msa1343580:CDS 30.0%
! TCATGCTTCTTTTATTCTTC+AGG - tig0006461:2039-2058 Msa1343580:CDS 30.0%
TAAGAGAAGGTGAGATGAAT+TGG - tig0006461:554-573 Msa1343580:CDS 35.0%
! AATGTCATTTCTTCATCGCT+TGG - tig0006461:640-659 Msa1343580:intron 35.0%
TAGAAACTCATCCATGTTCA+TGG + tig0006461:746-765 None:intergenic 35.0%
! CAGGAATCGATAACGAATTT+TGG + tig0006461:888-907 None:intergenic 35.0%
GGAAAACTGTTGAACAAGTT+TGG - tig0006461:920-939 Msa1343580:CDS 35.0%
CAACATTGTTGATGTTGTGA+TGG + tig0006461:972-991 None:intergenic 35.0%
AGGATTTCTTGGTTAAAGCA+GGG - tig0006461:1046-1065 Msa1343580:intron 35.0%
! GTTGTTATTAGGATACACTG+CGG + tig0006461:1166-1185 None:intergenic 35.0%
! GCCATTGTAGAGTTGTTATT+AGG + tig0006461:1177-1196 None:intergenic 35.0%
ATGGTTTAAGAGGAAGAAAG+AGG - tig0006461:1526-1545 Msa1343580:CDS 35.0%
TTTAAGAGGAAGAAAGAGGA+TGG - tig0006461:1530-1549 Msa1343580:CDS 35.0%
! AATTTCAGGAACCTGTTTTC+TGG + tig0006461:1637-1656 None:intergenic 35.0%
CAGTTCTGCTTCTAATTCAA+CGG + tig0006461:1902-1921 None:intergenic 35.0%
AGAGAATTCTCAACTGAAAC+AGG - tig0006461:1936-1955 Msa1343580:CDS 35.0%
GTGATTCAACTATACTGACA+AGG - tig0006461:2015-2034 Msa1343580:CDS 35.0%
AAAGCAAAAGAGAAACTGAG+AGG - tig0006461:2243-2262 Msa1343580:CDS 35.0%
TAAGAGAAGGTGAGATGAAT+TGG - tig0006461:554-573 Msa1343580:CDS 35.0%
! AATGTCATTTCTTCATCGCT+TGG - tig0006461:640-659 Msa1343580:intron 35.0%
TAGAAACTCATCCATGTTCA+TGG + tig0006461:746-765 None:intergenic 35.0%
! CAGGAATCGATAACGAATTT+TGG + tig0006461:888-907 None:intergenic 35.0%
GGAAAACTGTTGAACAAGTT+TGG - tig0006461:920-939 Msa1343580:CDS 35.0%
CAACATTGTTGATGTTGTGA+TGG + tig0006461:972-991 None:intergenic 35.0%
AGGATTTCTTGGTTAAAGCA+GGG - tig0006461:1046-1065 Msa1343580:intron 35.0%
! GTTGTTATTAGGATACACTG+CGG + tig0006461:1166-1185 None:intergenic 35.0%
! GCCATTGTAGAGTTGTTATT+AGG + tig0006461:1177-1196 None:intergenic 35.0%
ATGGTTTAAGAGGAAGAAAG+AGG - tig0006461:1526-1545 Msa1343580:CDS 35.0%
TTTAAGAGGAAGAAAGAGGA+TGG - tig0006461:1530-1549 Msa1343580:CDS 35.0%
! AATTTCAGGAACCTGTTTTC+TGG + tig0006461:1637-1656 None:intergenic 35.0%
CAGTTCTGCTTCTAATTCAA+CGG + tig0006461:1902-1921 None:intergenic 35.0%
AGAGAATTCTCAACTGAAAC+AGG - tig0006461:1936-1955 Msa1343580:CDS 35.0%
GTGATTCAACTATACTGACA+AGG - tig0006461:2015-2034 Msa1343580:CDS 35.0%
AAAGCAAAAGAGAAACTGAG+AGG - tig0006461:2243-2262 Msa1343580:CDS 35.0%
GTGAGATGAATTGGCAACAA+GGG - tig0006461:563-582 Msa1343580:CDS 40.0%
TGAGATGAATTGGCAACAAG+GGG - tig0006461:564-583 Msa1343580:CDS 40.0%
! TCAGAAAGGGATTAGCAAAC+AGG - tig0006461:849-868 Msa1343580:intron 40.0%
!! ATCGATAACGAATTTTGGCG+AGG + tig0006461:883-902 None:intergenic 40.0%
AATGTCATCTCGCCAAAAGT+CGG + tig0006461:1024-1043 None:intergenic 40.0%
GATGACATTGGAGGATTTCT+TGG - tig0006461:1035-1054 Msa1343580:intron 40.0%
GAGGATTTCTTGGTTAAAGC+AGG - tig0006461:1045-1064 Msa1343580:intron 40.0%
GGATTTCTTGGTTAAAGCAG+GGG - tig0006461:1047-1066 Msa1343580:intron 40.0%
TAACAACTCTACAATGGCTC+AGG - tig0006461:1179-1198 Msa1343580:intron 40.0%
ATGTTGGGAATGGTAAGACT+AGG - tig0006461:1313-1332 Msa1343580:CDS 40.0%
TGTTGGGAATGGTAAGACTA+GGG - tig0006461:1314-1333 Msa1343580:CDS 40.0%
GGTAAGACTAGGGATAGTAT+AGG - tig0006461:1324-1343 Msa1343580:CDS 40.0%
GACTAGGGATAGTATAGGTA+CGG - tig0006461:1329-1348 Msa1343580:CDS 40.0%
ACTAGGGATAGTATAGGTAC+GGG - tig0006461:1330-1349 Msa1343580:CDS 40.0%
TGGGATTGGAAACGAAAACT+CGG - tig0006461:1479-1498 Msa1343580:CDS 40.0%
AAAACTCGGGTGGTCAATTT+GGG - tig0006461:1493-1512 Msa1343580:CDS 40.0%
! AAGATCTAGAGCCAGAAAAC+AGG - tig0006461:1623-1642 Msa1343580:CDS 40.0%
AGACAACAGGTAACCAATGA+TGG - tig0006461:2082-2101 Msa1343580:CDS 40.0%
TTACCTCATGCAGTGTTTAG+AGG - tig0006461:2188-2207 Msa1343580:CDS 40.0%
TTTCCTCTAAACACTGCATG+AGG + tig0006461:2194-2213 None:intergenic 40.0%
! CTCTTTTGCTTTCTGAGCTT+TGG + tig0006461:2235-2254 None:intergenic 40.0%
AGAAACTGAGAGGCTTAAGA+AGG - tig0006461:2253-2272 Msa1343580:CDS 40.0%
GTGAGATGAATTGGCAACAA+GGG - tig0006461:563-582 Msa1343580:CDS 40.0%
TGAGATGAATTGGCAACAAG+GGG - tig0006461:564-583 Msa1343580:CDS 40.0%
! TCAGAAAGGGATTAGCAAAC+AGG - tig0006461:849-868 Msa1343580:intron 40.0%
!! ATCGATAACGAATTTTGGCG+AGG + tig0006461:883-902 None:intergenic 40.0%
AATGTCATCTCGCCAAAAGT+CGG + tig0006461:1024-1043 None:intergenic 40.0%
GATGACATTGGAGGATTTCT+TGG - tig0006461:1035-1054 Msa1343580:intron 40.0%
GAGGATTTCTTGGTTAAAGC+AGG - tig0006461:1045-1064 Msa1343580:intron 40.0%
GGATTTCTTGGTTAAAGCAG+GGG - tig0006461:1047-1066 Msa1343580:intron 40.0%
TAACAACTCTACAATGGCTC+AGG - tig0006461:1179-1198 Msa1343580:intron 40.0%
ATGTTGGGAATGGTAAGACT+AGG - tig0006461:1313-1332 Msa1343580:CDS 40.0%
TGTTGGGAATGGTAAGACTA+GGG - tig0006461:1314-1333 Msa1343580:CDS 40.0%
GGTAAGACTAGGGATAGTAT+AGG - tig0006461:1324-1343 Msa1343580:CDS 40.0%
GACTAGGGATAGTATAGGTA+CGG - tig0006461:1329-1348 Msa1343580:CDS 40.0%
ACTAGGGATAGTATAGGTAC+GGG - tig0006461:1330-1349 Msa1343580:CDS 40.0%
TGGGATTGGAAACGAAAACT+CGG - tig0006461:1479-1498 Msa1343580:CDS 40.0%
AAAACTCGGGTGGTCAATTT+GGG - tig0006461:1493-1512 Msa1343580:CDS 40.0%
! AAGATCTAGAGCCAGAAAAC+AGG - tig0006461:1623-1642 Msa1343580:CDS 40.0%
AGACAACAGGTAACCAATGA+TGG - tig0006461:2082-2101 Msa1343580:CDS 40.0%
TTACCTCATGCAGTGTTTAG+AGG - tig0006461:2188-2207 Msa1343580:CDS 40.0%
TTTCCTCTAAACACTGCATG+AGG + tig0006461:2194-2213 None:intergenic 40.0%
! CTCTTTTGCTTTCTGAGCTT+TGG + tig0006461:2235-2254 None:intergenic 40.0%
AGAAACTGAGAGGCTTAAGA+AGG - tig0006461:2253-2272 Msa1343580:CDS 40.0%
GGTGAGATGAATTGGCAACA+AGG - tig0006461:562-581 Msa1343580:CDS 45.0%
GGAGGTAGAATCATTGCAGA+GGG - tig0006461:585-604 Msa1343580:CDS 45.0%
GTAGAATCATTGCAGAGGGA+AGG - tig0006461:589-608 Msa1343580:CDS 45.0%
GTCGAGGGTGAGTGAATATA+TGG + tig0006461:680-699 None:intergenic 45.0%
TGTGACAGCGGCAAGAATTT+CGG - tig0006461:718-737 Msa1343580:intron 45.0%
! GAATTTCGGGTCCATGAACA+TGG - tig0006461:732-751 Msa1343580:intron 45.0%
!! TGTTGGATGCAGCTTGTTGT+TGG + tig0006461:795-814 None:intergenic 45.0%
AACTTGTCTGCAGCTCAGAA+AGG - tig0006461:835-854 Msa1343580:intron 45.0%
ACTTGTCTGCAGCTCAGAAA+GGG - tig0006461:836-855 Msa1343580:intron 45.0%
! TCAACAGTTTTCCTGCAGAG+AGG + tig0006461:913-932 None:intergenic 45.0%
! GACTTTTGGCGAGATGACAT+TGG - tig0006461:1023-1042 Msa1343580:intron 45.0%
! TTTTGGCGAGATGACATTGG+AGG - tig0006461:1026-1045 Msa1343580:intron 45.0%
TGGTTAAAGCAGGGGTAGTT+AGG - tig0006461:1055-1074 Msa1343580:intron 45.0%
GGTTAAAGCAGGGGTAGTTA+GGG - tig0006461:1056-1075 Msa1343580:intron 45.0%
GTAGTTAGGGAACAACAGTC+TGG - tig0006461:1069-1088 Msa1343580:intron 45.0%
!! CAGGCTGCTTCATTTGCTAT+TGG - tig0006461:1198-1217 Msa1343580:intron 45.0%
!! GCTGCTTCATTTGCTATTGG+CGG - tig0006461:1201-1220 Msa1343580:CDS 45.0%
CTAGGGATAGTATAGGTACG+GGG - tig0006461:1331-1350 Msa1343580:CDS 45.0%
ACCTGTTAGTCCGGTTTCTT+CGG - tig0006461:1455-1474 Msa1343580:CDS 45.0%
TTAGTCCGGTTTCTTCGGAT+GGG - tig0006461:1460-1479 Msa1343580:CDS 45.0%
GGGATTGGAAACGAAAACTC+GGG - tig0006461:1480-1499 Msa1343580:CDS 45.0%
ATTGGAAACGAAAACTCGGG+TGG - tig0006461:1483-1502 Msa1343580:CDS 45.0%
GAAAACTCGGGTGGTCAATT+TGG - tig0006461:1492-1511 Msa1343580:CDS 45.0%
GGAAGAAAGAGGATGGTTGA+TGG - tig0006461:1537-1556 Msa1343580:CDS 45.0%
!! TGGTTGATGGTCCTGTTGAA+AGG - tig0006461:1550-1569 Msa1343580:CDS 45.0%
!! GGTTGATGGTCCTGTTGAAA+GGG - tig0006461:1551-1570 Msa1343580:CDS 45.0%
TTCTCAACTGAAACAGGCAC+TGG - tig0006461:1942-1961 Msa1343580:CDS 45.0%
TTCTTCAGGCTGAACTAGAG+AGG - tig0006461:2053-2072 Msa1343580:intron 45.0%
AGAGAGGAGAAGAAGACAAC+AGG - tig0006461:2069-2088 Msa1343580:intron 45.0%
GGTGAGATGAATTGGCAACA+AGG - tig0006461:562-581 Msa1343580:CDS 45.0%
GGAGGTAGAATCATTGCAGA+GGG - tig0006461:585-604 Msa1343580:CDS 45.0%
GTAGAATCATTGCAGAGGGA+AGG - tig0006461:589-608 Msa1343580:CDS 45.0%
GTCGAGGGTGAGTGAATATA+TGG + tig0006461:680-699 None:intergenic 45.0%
TGTGACAGCGGCAAGAATTT+CGG - tig0006461:718-737 Msa1343580:intron 45.0%
! GAATTTCGGGTCCATGAACA+TGG - tig0006461:732-751 Msa1343580:intron 45.0%
!! TGTTGGATGCAGCTTGTTGT+TGG + tig0006461:795-814 None:intergenic 45.0%
AACTTGTCTGCAGCTCAGAA+AGG - tig0006461:835-854 Msa1343580:intron 45.0%
ACTTGTCTGCAGCTCAGAAA+GGG - tig0006461:836-855 Msa1343580:intron 45.0%
! TCAACAGTTTTCCTGCAGAG+AGG + tig0006461:913-932 None:intergenic 45.0%
! GACTTTTGGCGAGATGACAT+TGG - tig0006461:1023-1042 Msa1343580:intron 45.0%
! TTTTGGCGAGATGACATTGG+AGG - tig0006461:1026-1045 Msa1343580:intron 45.0%
TGGTTAAAGCAGGGGTAGTT+AGG - tig0006461:1055-1074 Msa1343580:intron 45.0%
GGTTAAAGCAGGGGTAGTTA+GGG - tig0006461:1056-1075 Msa1343580:intron 45.0%
GTAGTTAGGGAACAACAGTC+TGG - tig0006461:1069-1088 Msa1343580:intron 45.0%
!! CAGGCTGCTTCATTTGCTAT+TGG - tig0006461:1198-1217 Msa1343580:intron 45.0%
!! GCTGCTTCATTTGCTATTGG+CGG - tig0006461:1201-1220 Msa1343580:CDS 45.0%
CTAGGGATAGTATAGGTACG+GGG - tig0006461:1331-1350 Msa1343580:CDS 45.0%
ACCTGTTAGTCCGGTTTCTT+CGG - tig0006461:1455-1474 Msa1343580:CDS 45.0%
TTAGTCCGGTTTCTTCGGAT+GGG - tig0006461:1460-1479 Msa1343580:CDS 45.0%
GGGATTGGAAACGAAAACTC+GGG - tig0006461:1480-1499 Msa1343580:CDS 45.0%
ATTGGAAACGAAAACTCGGG+TGG - tig0006461:1483-1502 Msa1343580:CDS 45.0%
GAAAACTCGGGTGGTCAATT+TGG - tig0006461:1492-1511 Msa1343580:CDS 45.0%
GGAAGAAAGAGGATGGTTGA+TGG - tig0006461:1537-1556 Msa1343580:CDS 45.0%
!! TGGTTGATGGTCCTGTTGAA+AGG - tig0006461:1550-1569 Msa1343580:CDS 45.0%
!! GGTTGATGGTCCTGTTGAAA+GGG - tig0006461:1551-1570 Msa1343580:CDS 45.0%
TTCTCAACTGAAACAGGCAC+TGG - tig0006461:1942-1961 Msa1343580:CDS 45.0%
TTCTTCAGGCTGAACTAGAG+AGG - tig0006461:2053-2072 Msa1343580:intron 45.0%
AGAGAGGAGAAGAAGACAAC+AGG - tig0006461:2069-2088 Msa1343580:intron 45.0%
GATGAATTGGCAACAAGGGG+AGG - tig0006461:567-586 Msa1343580:CDS 50.0%
GGGAGGTAGAATCATTGCAG+AGG - tig0006461:584-603 Msa1343580:CDS 50.0%
AATTCTTGCCGCTGTCACAG+AGG + tig0006461:717-736 None:intergenic 50.0%
GTGACAGCGGCAAGAATTTC+GGG - tig0006461:719-738 Msa1343580:intron 50.0%
GGAACAACAGTCTGGTATGC+CGG - tig0006461:1077-1096 Msa1343580:intron 50.0%
!! GCTTCATTTGCTATTGGCGG+CGG - tig0006461:1204-1223 Msa1343580:CDS 50.0%
!! GGTTTGTTATGGAGGGAGAG+TGG - tig0006461:1374-1393 Msa1343580:CDS 50.0%
TATGGAGGGAGAGTGGTGAA+TGG - tig0006461:1381-1400 Msa1343580:CDS 50.0%
TGTGGCAGTGGCACAAACTA+TGG - tig0006461:1422-1441 Msa1343580:CDS 50.0%
GTGGCAGTGGCACAAACTAT+GGG - tig0006461:1423-1442 Msa1343580:CDS 50.0%
TGGCAGTGGCACAAACTATG+GGG - tig0006461:1424-1443 Msa1343580:CDS 50.0%
AGTGGCACAAACTATGGGGA+TGG - tig0006461:1428-1447 Msa1343580:CDS 50.0%
GTGGCACAAACTATGGGGAT+GGG - tig0006461:1429-1448 Msa1343580:CDS 50.0%
TCCGAAGAAACCGGACTAAC+AGG + tig0006461:1459-1478 None:intergenic 50.0%
GTTAGTCCGGTTTCTTCGGA+TGG - tig0006461:1459-1478 Msa1343580:CDS 50.0%
CCAATCCCATCCGAAGAAAC+CGG + tig0006461:1468-1487 None:intergenic 50.0%
TGATGGTCCTGTTGAAAGGG+TGG - tig0006461:1554-1573 Msa1343580:CDS 50.0%
!! TTGAAAGGGTGGTGGAGAGA+AGG - tig0006461:1565-1584 Msa1343580:CDS 50.0%
GATGAATTGGCAACAAGGGG+AGG - tig0006461:567-586 Msa1343580:CDS 50.0%
GGGAGGTAGAATCATTGCAG+AGG - tig0006461:584-603 Msa1343580:CDS 50.0%
AATTCTTGCCGCTGTCACAG+AGG + tig0006461:717-736 None:intergenic 50.0%
GTGACAGCGGCAAGAATTTC+GGG - tig0006461:719-738 Msa1343580:intron 50.0%
GGAACAACAGTCTGGTATGC+CGG - tig0006461:1077-1096 Msa1343580:intron 50.0%
!! GCTTCATTTGCTATTGGCGG+CGG - tig0006461:1204-1223 Msa1343580:CDS 50.0%
!! GGTTTGTTATGGAGGGAGAG+TGG - tig0006461:1374-1393 Msa1343580:CDS 50.0%
TATGGAGGGAGAGTGGTGAA+TGG - tig0006461:1381-1400 Msa1343580:CDS 50.0%
TGTGGCAGTGGCACAAACTA+TGG - tig0006461:1422-1441 Msa1343580:CDS 50.0%
GTGGCAGTGGCACAAACTAT+GGG - tig0006461:1423-1442 Msa1343580:CDS 50.0%
TGGCAGTGGCACAAACTATG+GGG - tig0006461:1424-1443 Msa1343580:CDS 50.0%
AGTGGCACAAACTATGGGGA+TGG - tig0006461:1428-1447 Msa1343580:CDS 50.0%
GTGGCACAAACTATGGGGAT+GGG - tig0006461:1429-1448 Msa1343580:CDS 50.0%
TCCGAAGAAACCGGACTAAC+AGG + tig0006461:1459-1478 None:intergenic 50.0%
GTTAGTCCGGTTTCTTCGGA+TGG - tig0006461:1459-1478 Msa1343580:CDS 50.0%
CCAATCCCATCCGAAGAAAC+CGG + tig0006461:1468-1487 None:intergenic 50.0%
TGATGGTCCTGTTGAAAGGG+TGG - tig0006461:1554-1573 Msa1343580:CDS 50.0%
!! TTGAAAGGGTGGTGGAGAGA+AGG - tig0006461:1565-1584 Msa1343580:CDS 50.0%
GGGAAGGAGAAGAAGCGATC+AGG - tig0006461:605-624 Msa1343580:CDS 55.0%
GCTGTGTTGGAACTCGTCGA+GGG + tig0006461:695-714 None:intergenic 55.0%
CAACACAGCCTCTGTGACAG+CGG - tig0006461:706-725 Msa1343580:intron 55.0%
!! GTTTTCCTGCAGAGAGGTGC+AGG + tig0006461:907-926 None:intergenic 55.0%
!! ACCCCTCGACAACCGACTTT+TGG - tig0006461:1009-1028 Msa1343580:intron 55.0%
GCCAAAAGTCGGTTGTCGAG+GGG + tig0006461:1013-1032 None:intergenic 55.0%
CGCCAAAAGTCGGTTGTCGA+GGG + tig0006461:1014-1033 None:intergenic 55.0%
TCGCCAAAAGTCGGTTGTCG+AGG + tig0006461:1015-1034 None:intergenic 55.0%
GTGAGATGACACTGCTGCTG+CGG + tig0006461:1124-1143 None:intergenic 55.0%
CAGCAGCAGTGTCATCTCAC+CGG - tig0006461:1124-1143 Msa1343580:intron 55.0%
!! TCATTTGCTATTGGCGGCGG+CGG - tig0006461:1207-1226 Msa1343580:CDS 55.0%
TGTGCCACCGTTTGGTATGG+CGG + tig0006461:1255-1274 None:intergenic 55.0%
CCATACCAAACGGTGGCACA+GGG - tig0006461:1255-1274 Msa1343580:CDS 55.0%
TGGAGGAGTTGGAGAGCCTT+CGG - tig0006461:1281-1300 Msa1343580:CDS 55.0%
! AGTTGGAGAGCCTTCGGGTT+CGG - tig0006461:1287-1306 Msa1343580:CDS 55.0%
! CTTCGGGTTCGGGGTATGTT+GGG - tig0006461:1298-1317 Msa1343580:CDS 55.0%
GGTTCGGGGTATGTTGGGAA+TGG - tig0006461:1303-1322 Msa1343580:CDS 55.0%
CCTCCATAACAAACCGCTGG+CGG + tig0006461:1369-1388 None:intergenic 55.0%
!! CGCCAGCGGTTTGTTATGGA+GGG - tig0006461:1367-1386 Msa1343580:CDS 55.0%
CTCCCTCCATAACAAACCGC+TGG + tig0006461:1372-1391 None:intergenic 55.0%
GAGGGAGAGTGGTGAATGGA+GGG - tig0006461:1385-1404 Msa1343580:CDS 55.0%
AGGGAGAGTGGTGAATGGAG+GGG - tig0006461:1386-1405 Msa1343580:CDS 55.0%
GCACAAACTATGGGGATGGG+CGG - tig0006461:1432-1451 Msa1343580:CDS 55.0%
CCGGTTTCTTCGGATGGGAT+TGG - tig0006461:1465-1484 Msa1343580:CDS 55.0%
TGGTCCTGTTGAAAGGGTGG+TGG - tig0006461:1557-1576 Msa1343580:CDS 55.0%
CTCTCCACCACCCTTTCAAC+AGG + tig0006461:1564-1583 None:intergenic 55.0%
GGGAAGGAGAAGAAGCGATC+AGG - tig0006461:605-624 Msa1343580:CDS 55.0%
GCTGTGTTGGAACTCGTCGA+GGG + tig0006461:695-714 None:intergenic 55.0%
CAACACAGCCTCTGTGACAG+CGG - tig0006461:706-725 Msa1343580:intron 55.0%
!! GTTTTCCTGCAGAGAGGTGC+AGG + tig0006461:907-926 None:intergenic 55.0%
!! ACCCCTCGACAACCGACTTT+TGG - tig0006461:1009-1028 Msa1343580:intron 55.0%
GCCAAAAGTCGGTTGTCGAG+GGG + tig0006461:1013-1032 None:intergenic 55.0%
CGCCAAAAGTCGGTTGTCGA+GGG + tig0006461:1014-1033 None:intergenic 55.0%
TCGCCAAAAGTCGGTTGTCG+AGG + tig0006461:1015-1034 None:intergenic 55.0%
GTGAGATGACACTGCTGCTG+CGG + tig0006461:1124-1143 None:intergenic 55.0%
CAGCAGCAGTGTCATCTCAC+CGG - tig0006461:1124-1143 Msa1343580:intron 55.0%
!! TCATTTGCTATTGGCGGCGG+CGG - tig0006461:1207-1226 Msa1343580:CDS 55.0%
TGTGCCACCGTTTGGTATGG+CGG + tig0006461:1255-1274 None:intergenic 55.0%
CCATACCAAACGGTGGCACA+GGG - tig0006461:1255-1274 Msa1343580:CDS 55.0%
TGGAGGAGTTGGAGAGCCTT+CGG - tig0006461:1281-1300 Msa1343580:CDS 55.0%
! AGTTGGAGAGCCTTCGGGTT+CGG - tig0006461:1287-1306 Msa1343580:CDS 55.0%
! CTTCGGGTTCGGGGTATGTT+GGG - tig0006461:1298-1317 Msa1343580:CDS 55.0%
GGTTCGGGGTATGTTGGGAA+TGG - tig0006461:1303-1322 Msa1343580:CDS 55.0%
CCTCCATAACAAACCGCTGG+CGG + tig0006461:1369-1388 None:intergenic 55.0%
!! CGCCAGCGGTTTGTTATGGA+GGG - tig0006461:1367-1386 Msa1343580:CDS 55.0%
CTCCCTCCATAACAAACCGC+TGG + tig0006461:1372-1391 None:intergenic 55.0%
GAGGGAGAGTGGTGAATGGA+GGG - tig0006461:1385-1404 Msa1343580:CDS 55.0%
AGGGAGAGTGGTGAATGGAG+GGG - tig0006461:1386-1405 Msa1343580:CDS 55.0%
GCACAAACTATGGGGATGGG+CGG - tig0006461:1432-1451 Msa1343580:CDS 55.0%
CCGGTTTCTTCGGATGGGAT+TGG - tig0006461:1465-1484 Msa1343580:CDS 55.0%
TGGTCCTGTTGAAAGGGTGG+TGG - tig0006461:1557-1576 Msa1343580:CDS 55.0%
CTCTCCACCACCCTTTCAAC+AGG + tig0006461:1564-1583 None:intergenic 55.0%
GGCTGTGTTGGAACTCGTCG+AGG + tig0006461:696-715 None:intergenic 60.0%
CGCTGTCACAGAGGCTGTGT+TGG + tig0006461:708-727 None:intergenic 60.0%
CGATTCCTGCACCTCTCTGC+AGG - tig0006461:899-918 Msa1343580:CDS 60.0%
CGGTTGTCGAGGGGTAGACT+CGG + tig0006461:1004-1023 None:intergenic 60.0%
!! GGTGGTGGTGCTATGGCAAC+CGG + tig0006461:1099-1118 None:intergenic 60.0%
ACTGCGGCGTAATGCTGCTG+GGG + tig0006461:1150-1169 None:intergenic 60.0%
CACTGCGGCGTAATGCTGCT+GGG + tig0006461:1151-1170 None:intergenic 60.0%
ACACTGCGGCGTAATGCTGC+TGG + tig0006461:1152-1171 None:intergenic 60.0%
GGTTGCGCCGCCATACCAAA+CGG - tig0006461:1245-1264 Msa1343580:CDS 60.0%
GCCATACCAAACGGTGGCAC+AGG - tig0006461:1254-1273 Msa1343580:CDS 60.0%
CCCTGTGCCACCGTTTGGTA+TGG + tig0006461:1258-1277 None:intergenic 60.0%
TACCAAACGGTGGCACAGGG+AGG - tig0006461:1258-1277 Msa1343580:CDS 60.0%
GGAGGAGTTGGAGAGCCTTC+GGG - tig0006461:1282-1301 Msa1343580:CDS 60.0%
! GTTGGAGAGCCTTCGGGTTC+GGG - tig0006461:1288-1307 Msa1343580:CDS 60.0%
! TTGGAGAGCCTTCGGGTTCG+GGG - tig0006461:1289-1308 Msa1343580:CDS 60.0%
CCAACATACCCCGAACCCGA+AGG + tig0006461:1300-1319 None:intergenic 60.0%
! CCTTCGGGTTCGGGGTATGT+TGG - tig0006461:1297-1316 Msa1343580:CDS 60.0%
CCATAACAAACCGCTGGCGG+CGG + tig0006461:1366-1385 None:intergenic 60.0%
!! CCGCCAGCGGTTTGTTATGG+AGG - tig0006461:1366-1385 Msa1343580:CDS 60.0%
GGAGGGAGAGTGGTGAATGG+AGG - tig0006461:1384-1403 Msa1343580:CDS 60.0%
GAGAGTGGTGAATGGAGGGG+CGG - tig0006461:1389-1408 Msa1343580:CDS 60.0%
AGAGTGGTGAATGGAGGGGC+GGG - tig0006461:1390-1409 Msa1343580:CDS 60.0%
GATGGGCGGACCTGTTAGTC+CGG - tig0006461:1446-1465 Msa1343580:CDS 60.0%
TGGTGGAGAGAAGGCAGAGG+AGG - tig0006461:1574-1593 Msa1343580:CDS 60.0%
GGCTGTGTTGGAACTCGTCG+AGG + tig0006461:696-715 None:intergenic 60.0%
CGCTGTCACAGAGGCTGTGT+TGG + tig0006461:708-727 None:intergenic 60.0%
CGATTCCTGCACCTCTCTGC+AGG - tig0006461:899-918 Msa1343580:CDS 60.0%
CGGTTGTCGAGGGGTAGACT+CGG + tig0006461:1004-1023 None:intergenic 60.0%
!! GGTGGTGGTGCTATGGCAAC+CGG + tig0006461:1099-1118 None:intergenic 60.0%
ACTGCGGCGTAATGCTGCTG+GGG + tig0006461:1150-1169 None:intergenic 60.0%
CACTGCGGCGTAATGCTGCT+GGG + tig0006461:1151-1170 None:intergenic 60.0%
ACACTGCGGCGTAATGCTGC+TGG + tig0006461:1152-1171 None:intergenic 60.0%
GGTTGCGCCGCCATACCAAA+CGG - tig0006461:1245-1264 Msa1343580:CDS 60.0%
GCCATACCAAACGGTGGCAC+AGG - tig0006461:1254-1273 Msa1343580:CDS 60.0%
CCCTGTGCCACCGTTTGGTA+TGG + tig0006461:1258-1277 None:intergenic 60.0%
TACCAAACGGTGGCACAGGG+AGG - tig0006461:1258-1277 Msa1343580:CDS 60.0%
GGAGGAGTTGGAGAGCCTTC+GGG - tig0006461:1282-1301 Msa1343580:CDS 60.0%
! GTTGGAGAGCCTTCGGGTTC+GGG - tig0006461:1288-1307 Msa1343580:CDS 60.0%
! TTGGAGAGCCTTCGGGTTCG+GGG - tig0006461:1289-1308 Msa1343580:CDS 60.0%
CCAACATACCCCGAACCCGA+AGG + tig0006461:1300-1319 None:intergenic 60.0%
! CCTTCGGGTTCGGGGTATGT+TGG - tig0006461:1297-1316 Msa1343580:CDS 60.0%
CCATAACAAACCGCTGGCGG+CGG + tig0006461:1366-1385 None:intergenic 60.0%
!! CCGCCAGCGGTTTGTTATGG+AGG - tig0006461:1366-1385 Msa1343580:CDS 60.0%
GGAGGGAGAGTGGTGAATGG+AGG - tig0006461:1384-1403 Msa1343580:CDS 60.0%
GAGAGTGGTGAATGGAGGGG+CGG - tig0006461:1389-1408 Msa1343580:CDS 60.0%
AGAGTGGTGAATGGAGGGGC+GGG - tig0006461:1390-1409 Msa1343580:CDS 60.0%
GATGGGCGGACCTGTTAGTC+CGG - tig0006461:1446-1465 Msa1343580:CDS 60.0%
TGGTGGAGAGAAGGCAGAGG+AGG - tig0006461:1574-1593 Msa1343580:CDS 60.0%
! TGCGGCAGGTGGTGGTGCTA+TGG + tig0006461:1106-1125 None:intergenic 65.0%
GATGACACTGCTGCTGCGGC+AGG + tig0006461:1120-1139 None:intergenic 65.0%
!! TTTGCTATTGGCGGCGGCGG+CGG - tig0006461:1210-1229 Msa1343580:CDS 65.0%
CGGCGGCGGGAATCTGAATG+TGG - tig0006461:1224-1243 Msa1343580:CDS 65.0%
TGCGCCGCCATACCAAACGG+TGG - tig0006461:1248-1267 Msa1343580:CDS 65.0%
CACCTCCCTGTGCCACCGTT+TGG + tig0006461:1263-1282 None:intergenic 65.0%
CAAACGGTGGCACAGGGAGG+TGG - tig0006461:1261-1280 Msa1343580:CDS 65.0%
GCACAGGGAGGTGGAGGAGT+TGG - tig0006461:1270-1289 Msa1343580:CDS 65.0%
TAACAAACCGCTGGCGGCGG+CGG + tig0006461:1363-1382 None:intergenic 65.0%
!! CCGCCGCCAGCGGTTTGTTA+TGG - tig0006461:1363-1382 Msa1343580:CDS 65.0%
AATGGAGGGGCGGGCGGTTA+TGG - tig0006461:1399-1418 Msa1343580:CDS 65.0%
GGGCGGTTATGGTGTGGCAG+TGG - tig0006461:1410-1429 Msa1343580:CDS 65.0%
!! GGGTGGTGGAGAGAAGGCAG+AGG - tig0006461:1571-1590 Msa1343580:CDS 65.0%
! TGCGGCAGGTGGTGGTGCTA+TGG + tig0006461:1106-1125 None:intergenic 65.0%
GATGACACTGCTGCTGCGGC+AGG + tig0006461:1120-1139 None:intergenic 65.0%
!! TTTGCTATTGGCGGCGGCGG+CGG - tig0006461:1210-1229 Msa1343580:CDS 65.0%
CGGCGGCGGGAATCTGAATG+TGG - tig0006461:1224-1243 Msa1343580:CDS 65.0%
TGCGCCGCCATACCAAACGG+TGG - tig0006461:1248-1267 Msa1343580:CDS 65.0%
CACCTCCCTGTGCCACCGTT+TGG + tig0006461:1263-1282 None:intergenic 65.0%
CAAACGGTGGCACAGGGAGG+TGG - tig0006461:1261-1280 Msa1343580:CDS 65.0%
GCACAGGGAGGTGGAGGAGT+TGG - tig0006461:1270-1289 Msa1343580:CDS 65.0%
TAACAAACCGCTGGCGGCGG+CGG + tig0006461:1363-1382 None:intergenic 65.0%
!! CCGCCGCCAGCGGTTTGTTA+TGG - tig0006461:1363-1382 Msa1343580:CDS 65.0%
AATGGAGGGGCGGGCGGTTA+TGG - tig0006461:1399-1418 Msa1343580:CDS 65.0%
GGGCGGTTATGGTGTGGCAG+TGG - tig0006461:1410-1429 Msa1343580:CDS 65.0%
!! GGGTGGTGGAGAGAAGGCAG+AGG - tig0006461:1571-1590 Msa1343580:CDS 65.0%
ACTGCTGCTGCGGCAGGTGG+TGG + tig0006461:1114-1133 None:intergenic 70.0%
GACACTGCTGCTGCGGCAGG+TGG + tig0006461:1117-1136 None:intergenic 70.0%
CGGCGTAATGCTGCTGGGGC+CGG + tig0006461:1146-1165 None:intergenic 70.0%
! TTGCTATTGGCGGCGGCGGC+GGG - tig0006461:1211-1230 Msa1343580:CDS 70.0%
ACGGTGGCACAGGGAGGTGG+AGG - tig0006461:1264-1283 Msa1343580:CDS 70.0%
GTGGTGAATGGAGGGGCGGG+CGG - tig0006461:1393-1412 Msa1343580:CDS 70.0%
AGGGGCGGGCGGTTATGGTG+TGG - tig0006461:1404-1423 Msa1343580:CDS 70.0%
ACTGCTGCTGCGGCAGGTGG+TGG + tig0006461:1114-1133 None:intergenic 70.0%
GACACTGCTGCTGCGGCAGG+TGG + tig0006461:1117-1136 None:intergenic 70.0%
CGGCGTAATGCTGCTGGGGC+CGG + tig0006461:1146-1165 None:intergenic 70.0%
! TTGCTATTGGCGGCGGCGGC+GGG - tig0006461:1211-1230 Msa1343580:CDS 70.0%
ACGGTGGCACAGGGAGGTGG+AGG - tig0006461:1264-1283 Msa1343580:CDS 70.0%
GTGGTGAATGGAGGGGCGGG+CGG - tig0006461:1393-1412 Msa1343580:CDS 70.0%
AGGGGCGGGCGGTTATGGTG+TGG - tig0006461:1404-1423 Msa1343580:CDS 70.0%
GTATCCTCCGCCGCCGCCAG+CGG - tig0006461:1353-1372 Msa1343580:CDS 75.0%
GTATCCTCCGCCGCCGCCAG+CGG - tig0006461:1353-1372 Msa1343580:CDS 75.0%
! CAAACCGCTGGCGGCGGCGG+AGG + tig0006461:1360-1379 None:intergenic 80.0%
! CAAACCGCTGGCGGCGGCGG+AGG + tig0006461:1360-1379 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0006461 gene 547 2296 547 ID=Msa1343580;Name=Msa1343580
tig0006461 mRNA 547 2296 547 ID=Msa1343580-mRNA-1;Parent=Msa1343580;Name=Msa1343580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.75|0.4|1|0.5|0.2|5|0|426
tig0006461 exon 2074 2296 2074 ID=Msa1343580-mRNA-1:exon:4218;Parent=Msa1343580-mRNA-1
tig0006461 exon 1199 2058 1199 ID=Msa1343580-mRNA-1:exon:4217;Parent=Msa1343580-mRNA-1
tig0006461 exon 880 951 880 ID=Msa1343580-mRNA-1:exon:4216;Parent=Msa1343580-mRNA-1
tig0006461 exon 753 782 753 ID=Msa1343580-mRNA-1:exon:4215;Parent=Msa1343580-mRNA-1
tig0006461 exon 547 642 547 ID=Msa1343580-mRNA-1:exon:4214;Parent=Msa1343580-mRNA-1
tig0006461 CDS 2074 2296 2074 ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
tig0006461 CDS 1199 2058 1199 ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
tig0006461 CDS 880 951 880 ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
tig0006461 CDS 753 782 753 ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
tig0006461 CDS 547 642 547 ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
Gene Sequence

>Msa1343580

ATGGTGGTAAGAGAAGGTGAGATGAATTGGCAACAAGGGGAGGTAGAATCATTGCAGAGGGAAGGAGAAGAAGCGATCAGGAATGACGTCAACAATGTCATTTCTTCATCGCTTGGAAGACAATCGTCATCCATATATTCACTCACCCTCGACGAGTTCCAACACAGCCTCTGTGACAGCGGCAAGAATTTCGGGTCCATGAACATGGATGAGTTTCTAAGTAAAGAAAACCAACAACAAGCTGCATCCAACAATAATAACAGCAACAACAATAACTTGTCTGCAGCTCAGAAAGGGATTAGCAAACAGGCAAGTCTTCCTCGCCAAAATTCGTTATCGATTCCTGCACCTCTCTGCAGGAAAACTGTTGAACAAGTTTGGTCTGAGATACACAAAGAACAACAGAACCATCACAACATCAACAATGTTGCTCAGAATACCGAGTCTACCCCTCGACAACCGACTTTTGGCGAGATGACATTGGAGGATTTCTTGGTTAAAGCAGGGGTAGTTAGGGAACAACAGTCTGGTATGCCGGTTGCCATAGCACCACCACCTGCCGCAGCAGCAGTGTCATCTCACCGGCCCCAGCAGCATTACGCCGCAGTGTATCCTAATAACAACTCTACAATGGCTCAGGCTGCTTCATTTGCTATTGGCGGCGGCGGCGGGAATCTGAATGTGGTTGCGCCGCCATACCAAACGGTGGCACAGGGAGGTGGAGGAGTTGGAGAGCCTTCGGGTTCGGGGTATGTTGGGAATGGTAAGACTAGGGATAGTATAGGTACGGGGTATCCTCCGCCGCCGCCAGCGGTTTGTTATGGAGGGAGAGTGGTGAATGGAGGGGCGGGCGGTTATGGTGTGGCAGTGGCACAAACTATGGGGATGGGCGGACCTGTTAGTCCGGTTTCTTCGGATGGGATTGGAAACGAAAACTCGGGTGGTCAATTTGGGATTGATATGAATGGTTTAAGAGGAAGAAAGAGGATGGTTGATGGTCCTGTTGAAAGGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCAGCAAGATCTAGAGCCAGAAAACAGGCATACACCGTTGAATTAGAAGCAGAACTGAATCAATTAAGAGAAGAGAATTCTCAACTGAAACAGGCACTGGCTGAACTAGAGAGGAGAAGAAGACAACAGTGTTTAGAGGAAACAAACGTGAGAGTTCAAACCAAAGCTCAGAAAGCAAAAGAGAAACTGAGAGGCTTAAGAAGGAATACAAGTTGTCATATGTGA
Protein sequence

>Msa1343580

MVVREGEMNWQQGEVESLQREGEEAIRNDVNNVISSSLGRQSSSIYSLTLDEFQHSLCDSGKNFGSMNMDEFLSKENQQQAASNNNNSNNNNLSAAQKGISKQASLPRQNSLSIPAPLCRKTVEQVWSEIHKEQQNHHNINNVAQNTESTPRQPTFGEMTLEDFLVKAGVVREQQSGMPVAIAPPPAAAAVSSHRPQQHYAAVYPNNNSTMAQAASFAIGGGGGNLNVVAPPYQTVAQGGGGVGEPSGSGYVGNGKTRDSIGTGYPPPPPAVCYGGRVVNGGAGGYGVAVAQTMGMGGPVSPVSSDGIGNENSGGQFGIDMNGLRGRKRMVDGPVERVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENSQLKQALAELERRRRQQCLEETNVRVQTKAQKAKEKLRGLRRNTSCHM*