AlfalfaGEDB | Msa1343580

M. sativa cultivar zhongmu-4 / Msa1343580

KEGG: K14432
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010152 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343580	XP_003625810.1	96.528	432	8	3	1	426	1	431	0.0	842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343580	sp\|Q9SJN0\|ABI5_ARATH	45.455	484	164	13	1	426	1	442	3.10e-109	332

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343580	G7L631	96.528	432	8	3	1	426	1	431	0.0	842

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TFs/TRs:

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Gene ID	Type	Classification
Msa1343580	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0143160	Msa1343580	0.827354	1.638988e-54	-8.615850e-47
Msa1164680	Msa1343580	0.874143	8.501656e-68	-8.615850e-47
Msa1343580	Msa1386130	0.917161	7.431952e-86	-8.615850e-47
Msa1343580	Msa1427680	0.910778	1.279347e-82	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343580	MtrunA17_Chr7g0266211	96.528	432	8	3	1	426	1	431	0.0	842
Msa1343580	MtrunA17_Chr8g0355121	34.758	351	137	11	37	383	23	285	3.57e-42	151
Msa1343580	MtrunA17_Chr3g0080341	35.511	352	155	11	38	389	20	299	4.88e-40	145
Msa1343580	MtrunA17_Chr4g0044771	33.981	412	149	18	43	401	22	363	4.98e-40	147
Msa1343580	MtrunA17_Chr2g0321381	49.275	138	61	4	43	180	26	154	1.40e-33	127
Msa1343580	MtrunA17_Chr2g0321381	46.154	143	48	4	261	388	161	289	6.94e-19	86.7
Msa1343580	MtrunA17_Chr2g0321411	52.381	126	47	3	293	414	165	281	2.93e-30	118
Msa1343580	MtrunA17_Chr2g0321411	47.059	136	59	5	44	176	13	138	1.82e-28	113
Msa1343580	MtrunA17_Chr3g0133971	46.269	134	47	4	44	173	32	144	1.92e-23	101
Msa1343580	MtrunA17_Chr3g0133971	46.043	139	67	3	275	407	283	419	3.46e-22	98.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343580	AT2G36270.1	45.455	484	164	13	1	426	1	442	3.15e-110	332
Msa1343580	AT2G36270.2	45.455	484	164	13	1	426	1	442	3.15e-110	332
Msa1343580	AT2G36270.3	45.815	454	146	13	1	396	1	412	1.72e-102	312
Msa1343580	AT1G45249.7	36.453	406	179	15	44	402	41	414	5.88e-45	162
Msa1343580	AT1G45249.6	36.453	406	179	15	44	402	41	414	5.88e-45	162
Msa1343580	AT1G45249.3	35.012	417	181	16	44	402	26	410	9.40e-40	147
Msa1343580	AT1G49720.1	30.946	391	223	10	29	398	6	370	3.55e-30	120
Msa1343580	AT1G49720.3	30.946	391	223	10	29	398	6	370	3.55e-30	120
Msa1343580	AT3G44460.1	52.555	137	54	5	38	173	35	161	4.31e-29	116
Msa1343580	AT3G44460.1	53.211	109	48	1	316	424	224	329	6.69e-21	93.6

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Find 152 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCGGGTGGTCAATTT+GGG	0.341515	tig0006461:-1328	Msa1343580:CDS
AAAGCAAAAGAGAAACTGAG+AGG	0.716117	tig0006461:-578	Msa1343580:CDS
AACTTGTCTGCAGCTCAGAA+AGG	0.521964	tig0006461:-1986	Msa1343580:CDS
AAGAATATGGTGGTAAGAGA+AGG	0.522714	tig0006461:-2280	None:intergenic
AAGATCTAGAGCCAGAAAAC+AGG	0.420885	tig0006461:-1198	Msa1343580:intron
AATGGAGGGGCGGGCGGTTA+TGG	0.286276	tig0006461:-1422	Msa1343580:CDS
AATGTCATCTCGCCAAAAGT+CGG	0.605885	tig0006461:+1800	None:intergenic
AATGTCATTTCTTCATCGCT+TGG	0.465109	tig0006461:-2181	Msa1343580:CDS
AATTCTTGCCGCTGTCACAG+AGG	0.718674	tig0006461:+2107	None:intergenic
ACACTGCGGCGTAATGCTGC+TGG	0.344613	tig0006461:+1672	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCTAATAACAACTCTACAA+TGG	-	tig0006461:1173-1192	Msa1343580:intron	30.0%
TCCTAATAACAACTCTACAA+TGG	-	tig0006461:1173-1192	Msa1343580:intron	30.0%
TAAGAGAAGGTGAGATGAAT+TGG	-	tig0006461:554-573	Msa1343580:CDS	35.0%
TAGAAACTCATCCATGTTCA+TGG	+	tig0006461:746-765	None:intergenic	35.0%
GGAAAACTGTTGAACAAGTT+TGG	-	tig0006461:920-939	Msa1343580:CDS	35.0%
CAACATTGTTGATGTTGTGA+TGG	+	tig0006461:972-991	None:intergenic	35.0%
AGGATTTCTTGGTTAAAGCA+GGG	-	tig0006461:1046-1065	Msa1343580:intron	35.0%
ATGGTTTAAGAGGAAGAAAG+AGG	-	tig0006461:1526-1545	Msa1343580:CDS	35.0%
TTTAAGAGGAAGAAAGAGGA+TGG	-	tig0006461:1530-1549	Msa1343580:CDS	35.0%
CAGTTCTGCTTCTAATTCAA+CGG	+	tig0006461:1902-1921	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0006461	gene	547	2296	547	ID=Msa1343580;Name=Msa1343580
tig0006461	mRNA	547	2296	547	ID=Msa1343580-mRNA-1;Parent=Msa1343580;Name=Msa1343580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0.75\|0.4\|1\|0.5\|0.2\|5\|0\|426
tig0006461	exon	2074	2296	2074	ID=Msa1343580-mRNA-1:exon:4218;Parent=Msa1343580-mRNA-1
tig0006461	exon	1199	2058	1199	ID=Msa1343580-mRNA-1:exon:4217;Parent=Msa1343580-mRNA-1
tig0006461	exon	880	951	880	ID=Msa1343580-mRNA-1:exon:4216;Parent=Msa1343580-mRNA-1
tig0006461	exon	753	782	753	ID=Msa1343580-mRNA-1:exon:4215;Parent=Msa1343580-mRNA-1
tig0006461	exon	547	642	547	ID=Msa1343580-mRNA-1:exon:4214;Parent=Msa1343580-mRNA-1
tig0006461	CDS	2074	2296	2074	ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
tig0006461	CDS	1199	2058	1199	ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
tig0006461	CDS	880	951	880	ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
tig0006461	CDS	753	782	753	ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1
tig0006461	CDS	547	642	547	ID=Msa1343580-mRNA-1:cds;Parent=Msa1343580-mRNA-1

Gene Sequence

>Msa1343580

ATGGTGGTAAGAGAAGGTGAGATGAATTGGCAACAAGGGGAGGTAGAATCATTGCAGAGGGAAGGAGAAGAAGCGATCAGGAATGACGTCAACAATGTCATTTCTTCATCGCTTGGAAGACAATCGTCATCCATATATTCACTCACCCTCGACGAGTTCCAACACAGCCTCTGTGACAGCGGCAAGAATTTCGGGTCCATGAACATGGATGAGTTTCTAAGTAAAGAAAACCAACAACAAGCTGCATCCAACAATAATAACAGCAACAACAATAACTTGTCTGCAGCTCAGAAAGGGATTAGCAAACAGGCAAGTCTTCCTCGCCAAAATTCGTTATCGATTCCTGCACCTCTCTGCAGGAAAACTGTTGAACAAGTTTGGTCTGAGATACACAAAGAACAACAGAACCATCACAACATCAACAATGTTGCTCAGAATACCGAGTCTACCCCTCGACAACCGACTTTTGGCGAGATGACATTGGAGGATTTCTTGGTTAAAGCAGGGGTAGTTAGGGAACAACAGTCTGGTATGCCGGTTGCCATAGCACCACCACCTGCCGCAGCAGCAGTGTCATCTCACCGGCCCCAGCAGCATTACGCCGCAGTGTATCCTAATAACAACTCTACAATGGCTCAGGCTGCTTCATTTGCTATTGGCGGCGGCGGCGGGAATCTGAATGTGGTTGCGCCGCCATACCAAACGGTGGCACAGGGAGGTGGAGGAGTTGGAGAGCCTTCGGGTTCGGGGTATGTTGGGAATGGTAAGACTAGGGATAGTATAGGTACGGGGTATCCTCCGCCGCCGCCAGCGGTTTGTTATGGAGGGAGAGTGGTGAATGGAGGGGCGGGCGGTTATGGTGTGGCAGTGGCACAAACTATGGGGATGGGCGGACCTGTTAGTCCGGTTTCTTCGGATGGGATTGGAAACGAAAACTCGGGTGGTCAATTTGGGATTGATATGAATGGTTTAAGAGGAAGAAAGAGGATGGTTGATGGTCCTGTTGAAAGGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCAGCAAGATCTAGAGCCAGAAAACAGGCATACACCGTTGAATTAGAAGCAGAACTGAATCAATTAAGAGAAGAGAATTCTCAACTGAAACAGGCACTGGCTGAACTAGAGAGGAGAAGAAGACAACAGTGTTTAGAGGAAACAAACGTGAGAGTTCAAACCAAAGCTCAGAAAGCAAAAGAGAAACTGAGAGGCTTAAGAAGGAATACAAGTTGTCATATGTGA

Protein sequence

>Msa1343580

MVVREGEMNWQQGEVESLQREGEEAIRNDVNNVISSSLGRQSSSIYSLTLDEFQHSLCDSGKNFGSMNMDEFLSKENQQQAASNNNNSNNNNLSAAQKGISKQASLPRQNSLSIPAPLCRKTVEQVWSEIHKEQQNHHNINNVAQNTESTPRQPTFGEMTLEDFLVKAGVVREQQSGMPVAIAPPPAAAAVSSHRPQQHYAAVYPNNNSTMAQAASFAIGGGGGNLNVVAPPYQTVAQGGGGVGEPSGSGYVGNGKTRDSIGTGYPPPPPAVCYGGRVVNGGAGGYGVAVAQTMGMGGPVSPVSSDGIGNENSGGQFGIDMNGLRGRKRMVDGPVERVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENSQLKQALAELERRRRQQCLEETNVRVQTKAQKAKEKLRGLRRNTSCHM*