AlfalfaGEDB | Msa1164680

M. sativa cultivar zhongmu-4 / Msa1164680

KEGG: K14432
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010152 GO:0010154 GO:0010182 GO:0010187 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164680	XP_003625810.1	96.296	432	9	3	1	426	1	431	0.0	840

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164680	sp\|Q9SJN0\|ABI5_ARATH	45.248	484	165	13	1	426	1	442	2.58e-109	332

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164680	G7L631	96.296	432	9	3	1	426	1	431	0.0	840

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TFs/TRs:

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Gene ID	Type	Classification
Msa1164680	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033220	Msa1164680	0.810374	1.189792e-50	-8.615850e-47
Msa0038530	Msa1164680	0.808207	3.469257e-50	-8.615850e-47
Msa0079880	Msa1164680	0.815372	9.562515e-52	-8.615850e-47
Msa0080030	Msa1164680	0.804218	2.400121e-49	-8.615850e-47
Msa0143160	Msa1164680	0.850969	1.203899e-60	-8.615850e-47
Msa0165640	Msa1164680	0.800217	1.598745e-48	-8.615850e-47
Msa0284800	Msa1164680	0.804506	2.090335e-49	-8.615850e-47
Msa0354840	Msa1164680	0.813774	2.158788e-51	-8.615850e-47
Msa0437480	Msa1164680	0.801402	9.156411e-49	-8.615850e-47
Msa0440350	Msa1164680	0.812973	3.237346e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164680	MtrunA17_Chr7g0266211	96.296	432	9	3	1	426	1	431	0.0	840
Msa1164680	MtrunA17_Chr8g0355121	34.758	351	137	11	37	383	23	285	3.60e-42	151
Msa1164680	MtrunA17_Chr4g0044771	33.981	412	149	18	43	401	22	363	1.82e-40	148
Msa1164680	MtrunA17_Chr3g0080341	35.511	352	155	11	38	389	20	299	6.72e-40	145
Msa1164680	MtrunA17_Chr2g0321381	49.275	138	61	4	43	180	26	154	1.37e-33	127
Msa1164680	MtrunA17_Chr2g0321381	46.154	143	48	4	261	388	161	289	6.74e-19	86.7
Msa1164680	MtrunA17_Chr2g0321411	52.381	126	47	3	293	414	165	281	2.99e-30	118
Msa1164680	MtrunA17_Chr2g0321411	47.059	136	59	5	44	176	13	138	1.85e-28	113
Msa1164680	MtrunA17_Chr3g0133971	46.269	134	47	4	44	173	32	144	1.71e-23	102
Msa1164680	MtrunA17_Chr3g0133971	46.043	139	67	3	275	407	283	419	1.91e-22	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1164680	AT2G36270.1	45.248	484	165	13	1	426	1	442	2.62e-110	332
Msa1164680	AT2G36270.2	45.248	484	165	13	1	426	1	442	2.62e-110	332
Msa1164680	AT2G36270.3	45.595	454	147	13	1	396	1	412	1.40e-102	312
Msa1164680	AT1G45249.1	36.700	406	178	16	44	402	26	399	5.35e-45	161
Msa1164680	AT1G45249.7	36.700	406	178	16	44	402	41	414	7.30e-45	161
Msa1164680	AT1G45249.6	36.700	406	178	16	44	402	41	414	7.30e-45	161
Msa1164680	AT1G45249.3	35.934	423	180	18	38	402	21	410	1.00e-41	153
Msa1164680	AT1G49720.1	30.946	391	223	10	29	398	6	370	2.88e-30	120
Msa1164680	AT1G49720.3	30.946	391	223	10	29	398	6	370	2.88e-30	120
Msa1164680	AT3G44460.1	52.555	137	54	5	38	173	35	161	4.10e-29	116

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Find 150 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCGGGTGGTCAATTT+GGG	0.341515	7_4:-56373626	Msa1164680:CDS
AAAGCAAAAGAGAAACTGAG+AGG	0.716117	7_4:-56372875	Msa1164680:CDS
AACTTGTCTGCAGCTCAGAA+AGG	0.521964	7_4:-56374284	Msa1164680:CDS
AAGAATATGGTGGTAAGAGA+AGG	0.522714	7_4:-56374578	None:intergenic
AAGATCTAGAGCCAGAAAAC+AGG	0.420885	7_4:-56373496	Msa1164680:intron
AATGGAGGGGCGGGCAGTTA+TGG	0.405922	7_4:-56373720	Msa1164680:CDS
AATGTCATCTCGCCAAAAGT+CGG	0.605885	7_4:+56374098	None:intergenic
AATGTCATTTCTTCATCGCT+TGG	0.465109	7_4:-56374479	Msa1164680:CDS
AATTCTTGCCGCTGTCACAG+AGG	0.718674	7_4:+56374405	None:intergenic
ACACTGCGGCGTAATGCTGC+TGG	0.344613	7_4:+56373970	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCTAATAACAACTCTACAA+TGG	-	chr7_4:56373470-56373489	Msa1164680:intron	30.0%
TCCTAATAACAACTCTACAA+TGG	-	chr7_4:56373470-56373489	Msa1164680:intron	30.0%
TAAGAGAAGGTGAGATGAAT+TGG	-	chr7_4:56372851-56372870	Msa1164680:CDS	35.0%
TAGAAACTCATCCATGTTCA+TGG	+	chr7_4:56373043-56373062	None:intergenic	35.0%
GGAAAACTGTTGAACAAGTT+TGG	-	chr7_4:56373217-56373236	Msa1164680:CDS	35.0%
CAACATTGTTGATGTTGTGA+TGG	+	chr7_4:56373269-56373288	None:intergenic	35.0%
AGGATTTCTTGGTTAAAGCA+GGG	-	chr7_4:56373343-56373362	Msa1164680:intron	35.0%
ATGGTTTAAGAGGAAGAAAG+AGG	-	chr7_4:56373823-56373842	Msa1164680:CDS	35.0%
TTTAAGAGGAAGAAAGAGGA+TGG	-	chr7_4:56373827-56373846	Msa1164680:CDS	35.0%
AGAGAATTCTCAACTGAAAC+AGG	-	chr7_4:56374234-56374253	Msa1164680:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	56372844	56374594	56372844	ID=Msa1164680;Name=Msa1164680
chr7_4	mRNA	56372844	56374594	56372844	ID=Msa1164680-mRNA-1;Parent=Msa1164680;Name=Msa1164680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0.75\|0.4\|1\|0.5\|0.2\|5\|0\|426
chr7_4	exon	56374372	56374594	56374372	ID=Msa1164680-mRNA-1:exon:16800;Parent=Msa1164680-mRNA-1
chr7_4	exon	56373497	56374356	56373497	ID=Msa1164680-mRNA-1:exon:16799;Parent=Msa1164680-mRNA-1
chr7_4	exon	56373177	56373248	56373177	ID=Msa1164680-mRNA-1:exon:16798;Parent=Msa1164680-mRNA-1
chr7_4	exon	56373050	56373079	56373050	ID=Msa1164680-mRNA-1:exon:16797;Parent=Msa1164680-mRNA-1
chr7_4	exon	56372844	56372939	56372844	ID=Msa1164680-mRNA-1:exon:16796;Parent=Msa1164680-mRNA-1
chr7_4	CDS	56374372	56374594	56374372	ID=Msa1164680-mRNA-1:cds;Parent=Msa1164680-mRNA-1
chr7_4	CDS	56373497	56374356	56373497	ID=Msa1164680-mRNA-1:cds;Parent=Msa1164680-mRNA-1
chr7_4	CDS	56373177	56373248	56373177	ID=Msa1164680-mRNA-1:cds;Parent=Msa1164680-mRNA-1
chr7_4	CDS	56373050	56373079	56373050	ID=Msa1164680-mRNA-1:cds;Parent=Msa1164680-mRNA-1
chr7_4	CDS	56372844	56372939	56372844	ID=Msa1164680-mRNA-1:cds;Parent=Msa1164680-mRNA-1

Gene Sequence

>Msa1164680

ATGGTGGTAAGAGAAGGTGAGATGAATTGGCAACAAGGGGAGGTAGAATCATTGCAGAGGGAAGGAGAAGAAGCGATCAGGAATGACGTCAACAATGTCATTTCTTCATCGCTTGGAAGACAATCGTCATCCATATATTCACTCACCCTCGACGAGTTCCAACACAGCCTCTGTGACAGCGGCAAGAATTTCGGGTCCATGAACATGGATGAGTTTCTAAGTAAAGAAAACCAACAACAAGCTGCATCCAACAATAATAACAGCAACAACAATAACTTGTCTGCAGCTCAGAAAGGGATTAGCAAACAGGCAAGTCTTCCTCGCCAAAATTCGTTATCGATTCCTGCACCTCTCTGCAGGAAAACTGTTGAACAAGTTTGGTCTGAGATACACAAAGAACAACAGAACCATCACAACATCAACAATGTTGCTCAGAATACCGAGTCTACCCCTCGACAACCGACTTTTGGCGAGATGACATTGGAGGATTTCTTGGTTAAAGCAGGGGTAGTTAGGGAACAACAGTCTGGTATGCCGGTTGCCATAGCACCACCACCTGCCGCAGCAGCAGTGTCATCTCACCGGCCCCAGCAGCATTACGCCGCAGTGTATCCTAATAACAACTCTACAATGGCTCAGGCTGCTTCATTTGCTATTGGTGGCGGCGGCGGGAATCTGAATGTGGTTGCGCCGCCATACCAAACGGTGGCACAGGGAGGTGGAGGAGTTGGAGAGCCTTCGGGTTCGGGGTATGTTGGGAATGGTAAGACTAGGGATAGTATAGGTACGGGGTATCCTCCGCCGCCGCCAGCGGTTTGTTATGGAGGGAGAGTGGTGAATGGAGGGGCGGGCAGTTATGGTGTGGCAGTGGCACAAACTATGGGGATGGGCGGACCTGTTAGTCCGGTTTCTTCGGATGGGATTGGAAACGAAAACTCGGGTGGTCAATTTGGGATTGATATGAATGGTTTAAGAGGAAGAAAGAGGATGGTTGATGGTCCTGTTGAAAGGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCAGCAAGATCTAGAGCCAGAAAACAGGCATACACAGTTGAATTAGAAGCAGAACTGAATCAATTAAGAGAAGAGAATTCTCAACTGAAACAGGCACTGGCTGAACTAGAGAGGAGAAGAAGACAACAGTGTTTAGAGGAAACAAACGTGAGAGTTCAAACCAAAGCTCAGAAAGCAAAAGAGAAACTGAGAGGCTTAAGAAGGAATACAAGTTGTCATATGTGA

Protein sequence

>Msa1164680

MVVREGEMNWQQGEVESLQREGEEAIRNDVNNVISSSLGRQSSSIYSLTLDEFQHSLCDSGKNFGSMNMDEFLSKENQQQAASNNNNSNNNNLSAAQKGISKQASLPRQNSLSIPAPLCRKTVEQVWSEIHKEQQNHHNINNVAQNTESTPRQPTFGEMTLEDFLVKAGVVREQQSGMPVAIAPPPAAAAVSSHRPQQHYAAVYPNNNSTMAQAASFAIGGGGGNLNVVAPPYQTVAQGGGGVGEPSGSGYVGNGKTRDSIGTGYPPPPPAVCYGGRVVNGGAGSYGVAVAQTMGMGGPVSPVSSDGIGNENSGGQFGIDMNGLRGRKRMVDGPVERVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENSQLKQALAELERRRRQQCLEETNVRVQTKAQKAKEKLRGLRRNTSCHM*