AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386130 MtrunA17_Chr7g0266211 96.528 432 8 3 1 426 1 431 0.0 842
Msa1386130 MtrunA17_Chr8g0355121 34.758 351 137 11 37 383 23 285 3.57e-42 151
Msa1386130 MtrunA17_Chr3g0080341 35.511 352 155 11 38 389 20 299 4.88e-40 145
Msa1386130 MtrunA17_Chr4g0044771 33.981 412 149 18 43 401 22 363 4.98e-40 147
Msa1386130 MtrunA17_Chr2g0321381 49.275 138 61 4 43 180 26 154 1.40e-33 127
Msa1386130 MtrunA17_Chr2g0321381 46.154 143 48 4 261 388 161 289 6.94e-19 86.7
Msa1386130 MtrunA17_Chr2g0321411 52.381 126 47 3 293 414 165 281 2.93e-30 118
Msa1386130 MtrunA17_Chr2g0321411 47.059 136 59 5 44 176 13 138 1.82e-28 113
Msa1386130 MtrunA17_Chr3g0133971 46.269 134 47 4 44 173 32 144 1.92e-23 101
Msa1386130 MtrunA17_Chr3g0133971 46.043 139 67 3 275 407 283 419 3.46e-22 98.2
Msa1386130 MtrunA17_Chr6g0460301 38.571 140 76 3 41 177 18 150 1.13e-17 83.6
Msa1386130 MtrunA17_Chr7g0254991 67.164 67 20 2 325 390 233 298 1.47e-17 83.2
Msa1386130 MtrunA17_Chr7g0254991 35.606 132 68 3 44 173 21 137 5.15e-15 75.5
Msa1386130 MtrunA17_Chr4g0051101 37.097 124 65 3 281 397 71 188 2.02e-15 74.7
Msa1386130 MtrunA17_Chr1g0201751 53.030 66 31 0 335 400 157 222 9.35e-13 67.8
Msa1386130 MtrunA17_Chr5g0440841 58.621 58 24 0 326 383 184 241 3.62e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386130 AT2G36270.1 45.455 484 164 13 1 426 1 442 3.15e-110 332
Msa1386130 AT2G36270.2 45.455 484 164 13 1 426 1 442 3.15e-110 332
Msa1386130 AT2G36270.3 45.815 454 146 13 1 396 1 412 1.72e-102 312
Msa1386130 AT1G45249.7 36.453 406 179 15 44 402 41 414 5.88e-45 162
Msa1386130 AT1G45249.6 36.453 406 179 15 44 402 41 414 5.88e-45 162
Msa1386130 AT1G45249.3 35.012 417 181 16 44 402 26 410 9.40e-40 147
Msa1386130 AT1G49720.1 30.946 391 223 10 29 398 6 370 3.55e-30 120
Msa1386130 AT1G49720.3 30.946 391 223 10 29 398 6 370 3.55e-30 120
Msa1386130 AT3G44460.1 52.555 137 54 5 38 173 35 161 4.31e-29 116
Msa1386130 AT3G44460.1 53.211 109 48 1 316 424 224 329 6.69e-21 93.6
Msa1386130 AT5G42910.1 27.053 414 229 14 26 416 7 370 4.28e-25 106
Msa1386130 AT3G56850.1 46.939 147 63 5 27 173 5 136 7.52e-25 103
Msa1386130 AT3G56850.1 67.797 59 18 1 326 383 211 269 1.26e-15 77.4
Msa1386130 AT1G45249.1 50.794 126 50 4 285 402 278 399 5.51e-24 103
Msa1386130 AT1G49720.2 39.634 164 70 6 29 176 6 156 1.86e-22 99.0
Msa1386130 AT1G49720.2 55.556 72 32 0 326 397 298 369 2.04e-16 81.3
Msa1386130 AT2G41070.5 35.789 190 77 7 25 205 3 156 1.30e-20 90.9
Msa1386130 AT2G41070.5 67.241 58 19 0 326 383 177 234 6.81e-16 77.4
Msa1386130 AT2G41070.3 35.789 190 77 7 25 205 3 156 2.71e-20 90.5
Msa1386130 AT2G41070.3 64.615 65 22 1 326 390 177 240 2.73e-16 79.0
Msa1386130 AT2G41070.1 35.789 190 77 7 25 205 3 156 2.71e-20 90.5
Msa1386130 AT2G41070.1 64.615 65 22 1 326 390 177 240 2.73e-16 79.0
Msa1386130 AT2G41070.2 35.789 190 77 7 25 205 3 156 2.71e-20 90.5
Msa1386130 AT2G41070.2 64.615 65 22 1 326 390 177 240 2.73e-16 79.0
Msa1386130 AT2G41070.4 35.789 190 77 7 25 205 12 165 3.37e-20 90.5
Msa1386130 AT2G41070.4 64.615 65 22 1 326 390 186 249 2.67e-16 79.0
Msa1386130 AT3G19290.4 40.426 141 78 3 38 173 34 173 5.15e-20 92.0
Msa1386130 AT3G19290.4 45.614 114 49 3 284 397 309 409 9.08e-18 85.1
Msa1386130 AT3G19290.3 40.426 141 78 3 38 173 34 173 6.08e-20 92.0
Msa1386130 AT3G19290.3 46.667 120 51 3 284 403 309 415 3.38e-19 89.7
Msa1386130 AT3G19290.1 40.426 141 78 3 38 173 34 173 6.39e-20 92.0
Msa1386130 AT3G19290.1 46.667 120 50 4 284 403 309 414 4.97e-18 86.3
Msa1386130 AT3G19290.5 40.426 141 78 3 38 173 34 173 6.39e-20 92.0
Msa1386130 AT3G19290.5 46.667 120 50 4 284 403 309 414 4.97e-18 86.3
Msa1386130 AT3G19290.2 40.426 141 78 3 38 173 34 173 8.86e-20 91.3
Msa1386130 AT4G34000.1 38.095 168 73 6 35 174 24 188 2.04e-19 90.5
Msa1386130 AT4G34000.1 57.333 75 32 0 324 398 357 431 3.65e-19 89.7
Msa1386130 AT4G34000.4 38.095 168 73 6 35 174 24 188 2.04e-19 90.5
Msa1386130 AT4G34000.4 57.333 75 32 0 324 398 357 431 3.65e-19 89.7
Msa1386130 AT4G34000.2 38.095 168 73 6 35 174 24 188 2.04e-19 90.5
Msa1386130 AT4G34000.2 57.333 75 32 0 324 398 357 431 3.65e-19 89.7
Msa1386130 AT4G34000.3 38.182 165 71 6 38 174 27 188 2.18e-19 90.5
Msa1386130 AT4G34000.3 53.659 82 31 1 324 398 357 438 3.18e-17 84.0
Msa1386130 AT5G44080.1 44.762 105 55 2 318 419 207 311 5.32e-15 75.9
Msa1386130 AT1G45249.10 52.222 90 31 4 285 366 278 363 1.56e-14 75.1
Msa1386130 AT1G45249.5 52.222 90 31 4 285 366 278 363 1.56e-14 75.1
Msa1386130 AT2G17770.2 41.026 117 51 3 266 382 69 167 3.94e-14 71.2
Msa1386130 AT1G45249.4 47.573 103 36 5 285 373 278 376 1.32e-13 72.4
Msa1386130 AT1G45249.8 47.573 103 36 5 285 373 278 376 1.32e-13 72.4
Msa1386130 AT1G45249.2 47.573 103 36 5 285 373 278 376 1.32e-13 72.4
Msa1386130 AT1G45249.9 47.573 103 36 5 285 373 278 376 1.32e-13 72.4
Msa1386130 AT1G03970.1 50.000 76 36 1 323 398 173 246 2.56e-12 67.4
Msa1386130 AT4G35900.1 33.951 162 89 6 235 389 114 264 6.84e-12 66.2

Find 151 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACTCGGGTGGTCAATT+TGG 0.166727 tig0020787:+46148 Msa1386130:CDS
CAGGAATCGATAACGAATTT+TGG 0.216092 tig0020787:-45541 None:intergenic
GTTGGAGAGCCTTCGGGTTC+GGG 0.231478 tig0020787:+45944 Msa1386130:CDS
CAGGCTGCTTCATTTGCTAT+TGG 0.248337 tig0020787:+45854 Msa1386130:CDS
GTGACAGCGGCAAGAATTTC+GGG 0.248709 tig0020787:+45375 Msa1386130:CDS
AGTTGGAGAGCCTTCGGGTT+CGG 0.262820 tig0020787:+45943 Msa1386130:CDS
GATGACATTGGAGGATTTCT+TGG 0.268533 tig0020787:+45691 Msa1386130:CDS
TGTGACAGCGGCAAGAATTT+CGG 0.276728 tig0020787:+45374 Msa1386130:CDS
TGGTTAAAGCAGGGGTAGTT+AGG 0.281516 tig0020787:+45711 Msa1386130:CDS
AATGGAGGGGCGGGCGGTTA+TGG 0.286276 tig0020787:+46055 Msa1386130:CDS
GCCATTGTAGAGTTGTTATT+AGG 0.296465 tig0020787:-45830 None:intergenic
CCGCCGCCAGCGGTTTGTTA+TGG 0.308148 tig0020787:+46019 Msa1386130:CDS
GTTGTTGCTGTTATTATTGT+TGG 0.310662 tig0020787:-45465 None:intergenic
TGTGGCAGTGGCACAAACTA+TGG 0.315000 tig0020787:+46078 Msa1386130:CDS
ACCCCTCGACAACCGACTTT+TGG 0.322363 tig0020787:+45665 Msa1386130:CDS
ACCTGTTAGTCCGGTTTCTT+CGG 0.327709 tig0020787:+46111 Msa1386130:CDS
AAAACTCGGGTGGTCAATTT+GGG 0.341515 tig0020787:+46149 Msa1386130:CDS
ACACTGCGGCGTAATGCTGC+TGG 0.344613 tig0020787:-45805 None:intergenic
TTACCTCATGCAGTGTTTAG+AGG 0.347444 tig0020787:+46844 Msa1386130:intron
GGAAAACTGTTGAACAAGTT+TGG 0.348644 tig0020787:+45576 Msa1386130:CDS
TTGCTATTGGCGGCGGCGGC+GGG 0.353891 tig0020787:+45867 Msa1386130:CDS
CTCTCCACCACCCTTTCAAC+AGG 0.360473 tig0020787:-46217 None:intergenic
CACTGCGGCGTAATGCTGCT+GGG 0.364765 tig0020787:-45804 None:intergenic
TGGAGGAGTTGGAGAGCCTT+CGG 0.365531 tig0020787:+45937 Msa1386130:CDS
TCCGAAGAAACCGGACTAAC+AGG 0.372237 tig0020787:-46112 None:intergenic
GTCGAGGGTGAGTGAATATA+TGG 0.374227 tig0020787:-45333 None:intergenic
TTTGCTATTGGCGGCGGCGG+CGG 0.374673 tig0020787:+45866 Msa1386130:CDS
CTTCGGGTTCGGGGTATGTT+GGG 0.383128 tig0020787:+45954 Msa1386130:CDS
CAAACCGCTGGCGGCGGCGG+AGG 0.394088 tig0020787:-46013 None:intergenic
ACTGCTGCTGCGGCAGGTGG+TGG 0.397437 tig0020787:-45767 None:intergenic
TAGAAACTCATCCATGTTCA+TGG 0.401819 tig0020787:-45399 None:intergenic
AGAGAATTCTCAACTGAAAC+AGG 0.410221 tig0020787:+46592 Msa1386130:CDS
TAAGAGAAGGTGAGATGAAT+TGG 0.412357 tig0020787:+45210 Msa1386130:CDS
CCGGTTTCTTCGGATGGGAT+TGG 0.415620 tig0020787:+46121 Msa1386130:CDS
GGAGGAGTTGGAGAGCCTTC+GGG 0.416356 tig0020787:+45938 Msa1386130:CDS
CCTTCGGGTTCGGGGTATGT+TGG 0.416821 tig0020787:+45953 Msa1386130:CDS
CACCTCCCTGTGCCACCGTT+TGG 0.419295 tig0020787:-45916 None:intergenic
AAGATCTAGAGCCAGAAAAC+AGG 0.420885 tig0020787:+46279 Msa1386130:CDS
TGTTGGATGCAGCTTGTTGT+TGG 0.421539 tig0020787:-45448 None:intergenic
CGGCGTAATGCTGCTGGGGC+CGG 0.426351 tig0020787:-45799 None:intergenic
GCACAGGGAGGTGGAGGAGT+TGG 0.427569 tig0020787:+45926 Msa1386130:CDS
GTTAGTCCGGTTTCTTCGGA+TGG 0.429323 tig0020787:+46115 Msa1386130:CDS
TCATTTGCTATTGGCGGCGG+CGG 0.434400 tig0020787:+45863 Msa1386130:CDS
CCCTGTGCCACCGTTTGGTA+TGG 0.438711 tig0020787:-45911 None:intergenic
GGTGGTGGTGCTATGGCAAC+CGG 0.443970 tig0020787:-45752 None:intergenic
GAGGGAGAGTGGTGAATGGA+GGG 0.444211 tig0020787:+46041 Msa1386130:CDS
GATGGGCGGACCTGTTAGTC+CGG 0.445248 tig0020787:+46102 Msa1386130:CDS
TCAGAAAGGGATTAGCAAAC+AGG 0.447868 tig0020787:+45505 Msa1386130:CDS
ATTGATATGAATGGTTTAAG+AGG 0.448244 tig0020787:+46172 Msa1386130:CDS
GGAAGAAAGAGGATGGTTGA+TGG 0.453215 tig0020787:+46193 Msa1386130:CDS
GAGGATTTCTTGGTTAAAGC+AGG 0.456229 tig0020787:+45701 Msa1386130:CDS
GATGACACTGCTGCTGCGGC+AGG 0.456822 tig0020787:-45773 None:intergenic
TGGTGGAGAGAAGGCAGAGG+AGG 0.457363 tig0020787:+46230 Msa1386130:CDS
GACTAGGGATAGTATAGGTA+CGG 0.462211 tig0020787:+45985 Msa1386130:CDS
AATGTCATTTCTTCATCGCT+TGG 0.465109 tig0020787:+45296 Msa1386130:CDS
GCCATACCAAACGGTGGCAC+AGG 0.467096 tig0020787:+45910 Msa1386130:CDS
ACGGTGGCACAGGGAGGTGG+AGG 0.470179 tig0020787:+45920 Msa1386130:CDS
GGGCGGTTATGGTGTGGCAG+TGG 0.471720 tig0020787:+46066 Msa1386130:CDS
GGGAAGGAGAAGAAGCGATC+AGG 0.473369 tig0020787:+45261 Msa1386130:CDS
AGGGGCGGGCGGTTATGGTG+TGG 0.475144 tig0020787:+46060 Msa1386130:CDS
TAACAAACCGCTGGCGGCGG+CGG 0.477710 tig0020787:-46016 None:intergenic
CCGCCAGCGGTTTGTTATGG+AGG 0.477954 tig0020787:+46022 Msa1386130:CDS
CAAACGGTGGCACAGGGAGG+TGG 0.478151 tig0020787:+45917 Msa1386130:CDS
CGATTCCTGCACCTCTCTGC+AGG 0.479043 tig0020787:+45555 Msa1386130:CDS
GGTTGATGGTCCTGTTGAAA+GGG 0.481262 tig0020787:+46207 Msa1386130:CDS
CCAATCCCATCCGAAGAAAC+CGG 0.481309 tig0020787:-46121 None:intergenic
GGTTAAAGCAGGGGTAGTTA+GGG 0.481908 tig0020787:+45712 Msa1386130:CDS
AGAGAGGAGAAGAAGACAAC+AGG 0.484243 tig0020787:+46725 Msa1386130:CDS
TTAGTCCGGTTTCTTCGGAT+GGG 0.486374 tig0020787:+46116 Msa1386130:CDS
GACACTGCTGCTGCGGCAGG+TGG 0.491945 tig0020787:-45770 None:intergenic
AGGGAGAGTGGTGAATGGAG+GGG 0.491999 tig0020787:+46042 Msa1386130:CDS
GCTGCTTCATTTGCTATTGG+CGG 0.495000 tig0020787:+45857 Msa1386130:CDS
GAGAGTGGTGAATGGAGGGG+CGG 0.499932 tig0020787:+46045 Msa1386130:CDS
AGTGGCACAAACTATGGGGA+TGG 0.502987 tig0020787:+46084 Msa1386130:CDS
CAATTTGGGATTGATATGAA+TGG 0.505237 tig0020787:+46163 Msa1386130:CDS
AGAGTGGTGAATGGAGGGGC+GGG 0.505464 tig0020787:+46046 Msa1386130:CDS
TGCGGCAGGTGGTGGTGCTA+TGG 0.506524 tig0020787:-45759 None:intergenic
GGGTGGTGGAGAGAAGGCAG+AGG 0.506953 tig0020787:+46227 Msa1386130:CDS
GGAGGGAGAGTGGTGAATGG+AGG 0.509570 tig0020787:+46040 Msa1386130:CDS
CCATAACAAACCGCTGGCGG+CGG 0.510979 tig0020787:-46019 None:intergenic
ACTTGTCTGCAGCTCAGAAA+GGG 0.519532 tig0020787:+45492 Msa1386130:CDS
CAACATTGTTGATGTTGTGA+TGG 0.520957 tig0020787:-45625 None:intergenic
GTGGCAGTGGCACAAACTAT+GGG 0.520968 tig0020787:+46079 Msa1386130:CDS
AACTTGTCTGCAGCTCAGAA+AGG 0.521964 tig0020787:+45491 Msa1386130:CDS
CGCCAAAAGTCGGTTGTCGA+GGG 0.522444 tig0020787:-45667 None:intergenic
AAGAATATGGTGGTAAGAGA+AGG 0.522714 tig0020787:+45197 None:intergenic
GCTTCATTTGCTATTGGCGG+CGG 0.528163 tig0020787:+45860 Msa1386130:CDS
TATGGAGGGAGAGTGGTGAA+TGG 0.528806 tig0020787:+46037 Msa1386130:CDS
CGCCAGCGGTTTGTTATGGA+GGG 0.528969 tig0020787:+46023 Msa1386130:CDS
ACTAGGGATAGTATAGGTAC+GGG 0.531284 tig0020787:+45986 Msa1386130:CDS
AGAAACTGAGAGGCTTAAGA+AGG 0.532363 tig0020787:+46909 Msa1386130:CDS
TAACAACTCTACAATGGCTC+AGG 0.534100 tig0020787:+45835 Msa1386130:CDS
TGTTGGGAATGGTAAGACTA+GGG 0.535160 tig0020787:+45970 Msa1386130:CDS
GAATTTCGGGTCCATGAACA+TGG 0.544850 tig0020787:+45388 Msa1386130:CDS
TTTAAGAGGAAGAAAGAGGA+TGG 0.548041 tig0020787:+46186 Msa1386130:CDS
CGCTGTCACAGAGGCTGTGT+TGG 0.549331 tig0020787:-45361 None:intergenic
TCGCCAAAAGTCGGTTGTCG+AGG 0.549884 tig0020787:-45668 None:intergenic
TTGAAAGGGTGGTGGAGAGA+AGG 0.555209 tig0020787:+46221 Msa1386130:CDS
GTGGCACAAACTATGGGGAT+GGG 0.557884 tig0020787:+46085 Msa1386130:CDS
GGAACAACAGTCTGGTATGC+CGG 0.558038 tig0020787:+45733 Msa1386130:CDS
CTCCCTCCATAACAAACCGC+TGG 0.558325 tig0020787:-46025 None:intergenic
GTAGTTAGGGAACAACAGTC+TGG 0.560019 tig0020787:+45725 Msa1386130:CDS
TTCTCAACTGAAACAGGCAC+TGG 0.564684 tig0020787:+46598 Msa1386130:CDS
TGGTTGATGGTCCTGTTGAA+AGG 0.565970 tig0020787:+46206 Msa1386130:CDS
GGCTGTGTTGGAACTCGTCG+AGG 0.566650 tig0020787:-45349 None:intergenic
GGTTCGGGGTATGTTGGGAA+TGG 0.567692 tig0020787:+45959 Msa1386130:CDS
CAGCAGCAGTGTCATCTCAC+CGG 0.569711 tig0020787:+45780 Msa1386130:CDS
ATGGTTTAAGAGGAAGAAAG+AGG 0.570839 tig0020787:+46182 Msa1386130:CDS
TTGGAGAGCCTTCGGGTTCG+GGG 0.572733 tig0020787:+45945 Msa1386130:CDS
TGTGCCACCGTTTGGTATGG+CGG 0.573089 tig0020787:-45908 None:intergenic
AGGATTTCTTGGTTAAAGCA+GGG 0.574066 tig0020787:+45702 Msa1386130:CDS
TGATGGTCCTGTTGAAAGGG+TGG 0.574869 tig0020787:+46210 Msa1386130:CDS
TTCTTCAGGCTGAACTAGAG+AGG 0.575021 tig0020787:+46709 Msa1386130:intron
GGTAAGACTAGGGATAGTAT+AGG 0.577774 tig0020787:+45980 Msa1386130:CDS
ACTGCGGCGTAATGCTGCTG+GGG 0.580500 tig0020787:-45803 None:intergenic
GTGAGATGAATTGGCAACAA+GGG 0.583790 tig0020787:+45219 Msa1386130:CDS
CCATACCAAACGGTGGCACA+GGG 0.583912 tig0020787:+45911 Msa1386130:CDS
TGGGATTGGAAACGAAAACT+CGG 0.584083 tig0020787:+46135 Msa1386130:CDS
GTAGAATCATTGCAGAGGGA+AGG 0.584321 tig0020787:+45245 Msa1386130:CDS
ATGTTGGGAATGGTAAGACT+AGG 0.593588 tig0020787:+45969 Msa1386130:CDS
GGTTGCGCCGCCATACCAAA+CGG 0.595175 tig0020787:+45901 Msa1386130:CDS
GTATCCTCCGCCGCCGCCAG+CGG 0.598153 tig0020787:+46009 Msa1386130:CDS
GTGGTGAATGGAGGGGCGGG+CGG 0.598279 tig0020787:+46049 Msa1386130:CDS
CAACACAGCCTCTGTGACAG+CGG 0.601697 tig0020787:+45362 Msa1386130:CDS
CGGCGGCGGGAATCTGAATG+TGG 0.602274 tig0020787:+45880 Msa1386130:CDS
AATGTCATCTCGCCAAAAGT+CGG 0.605885 tig0020787:-45677 None:intergenic
GTGAGATGACACTGCTGCTG+CGG 0.608010 tig0020787:-45777 None:intergenic
TGGTCCTGTTGAAAGGGTGG+TGG 0.612440 tig0020787:+46213 Msa1386130:CDS
GGAGGTAGAATCATTGCAGA+GGG 0.612581 tig0020787:+45241 Msa1386130:CDS
GGTGAGATGAATTGGCAACA+AGG 0.616844 tig0020787:+45218 Msa1386130:CDS
CGGTTGTCGAGGGGTAGACT+CGG 0.617759 tig0020787:-45657 None:intergenic
TCCTAATAACAACTCTACAA+TGG 0.627967 tig0020787:+45829 Msa1386130:CDS
GCACAAACTATGGGGATGGG+CGG 0.628434 tig0020787:+46088 Msa1386130:CDS
GGTTTGTTATGGAGGGAGAG+TGG 0.634679 tig0020787:+46030 Msa1386130:CDS
GATGAATTGGCAACAAGGGG+AGG 0.635893 tig0020787:+45223 Msa1386130:CDS
TGAGATGAATTGGCAACAAG+GGG 0.639163 tig0020787:+45220 Msa1386130:CDS
CCTCCATAACAAACCGCTGG+CGG 0.640926 tig0020787:-46022 None:intergenic
GGATTTCTTGGTTAAAGCAG+GGG 0.646725 tig0020787:+45703 Msa1386130:CDS
CCAACATACCCCGAACCCGA+AGG 0.649040 tig0020787:-45953 None:intergenic
GCCAAAAGTCGGTTGTCGAG+GGG 0.657167 tig0020787:-45666 None:intergenic
GCTGTGTTGGAACTCGTCGA+GGG 0.657810 tig0020787:-45348 None:intergenic
GGGATTGGAAACGAAAACTC+GGG 0.662976 tig0020787:+46136 Msa1386130:CDS
GGGAGGTAGAATCATTGCAG+AGG 0.672753 tig0020787:+45240 Msa1386130:CDS
TACCAAACGGTGGCACAGGG+AGG 0.683725 tig0020787:+45914 Msa1386130:CDS
TGCGCCGCCATACCAAACGG+TGG 0.683832 tig0020787:+45904 Msa1386130:CDS
TGGCAGTGGCACAAACTATG+GGG 0.694881 tig0020787:+46080 Msa1386130:CDS
ATTGGAAACGAAAACTCGGG+TGG 0.712637 tig0020787:+46139 Msa1386130:CDS
AAAGCAAAAGAGAAACTGAG+AGG 0.716117 tig0020787:+46899 Msa1386130:CDS
AATTCTTGCCGCTGTCACAG+AGG 0.718674 tig0020787:-45370 None:intergenic
CTAGGGATAGTATAGGTACG+GGG 0.720083 tig0020787:+45987 Msa1386130:CDS
GTTGTTATTAGGATACACTG+CGG 0.806201 tig0020787:-45819 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAAAGTATAAAATAAT+TGG - tig0020787:46320-46339 None:intergenic 10.0%
!! AGATTAAAGTATAAAATAAT+TGG - tig0020787:46320-46339 None:intergenic 10.0%
!! AAATAATTGGTTAAAATTTC+AGG - tig0020787:46307-46326 None:intergenic 15.0%
!! TATATATACATAAGAATTTG+TGG - tig0020787:46355-46374 None:intergenic 15.0%
!! TTTATATACTATTGAAGAAT+TGG + tig0020787:46396-46415 Msa1386130:intron 15.0%
!!! CAAACATATTATTTCTAATT+TGG - tig0020787:46454-46473 None:intergenic 15.0%
!! AAATAATTGGTTAAAATTTC+AGG - tig0020787:46307-46326 None:intergenic 15.0%
!! TATATATACATAAGAATTTG+TGG - tig0020787:46355-46374 None:intergenic 15.0%
!! TTTATATACTATTGAAGAAT+TGG + tig0020787:46396-46415 Msa1386130:intron 15.0%
!!! CAAACATATTATTTCTAATT+TGG - tig0020787:46454-46473 None:intergenic 15.0%
!! CATTAACTATTACAGAATAT+TGG + tig0020787:46634-46653 Msa1386130:intron 20.0%
!!! TAATGTCTTTAAATTTTCTG+AGG - tig0020787:46780-46799 None:intergenic 20.0%
!! TAGATTTGATTCAAAACAAA+AGG - tig0020787:46808-46827 None:intergenic 20.0%
!! CATTAACTATTACAGAATAT+TGG + tig0020787:46634-46653 Msa1386130:intron 20.0%
!!! TAATGTCTTTAAATTTTCTG+AGG - tig0020787:46780-46799 None:intergenic 20.0%
!! TAGATTTGATTCAAAACAAA+AGG - tig0020787:46808-46827 None:intergenic 20.0%
! ATGAGTTTCTAAGTAGTATT+TGG + tig0020787:45411-45430 Msa1386130:intron 25.0%
! ATTGATATGAATGGTTTAAG+AGG + tig0020787:46172-46191 Msa1386130:CDS 25.0%
! GAAAGAAAATTGTGTTACAA+AGG - tig0020787:46516-46535 None:intergenic 25.0%
! CTGTAATAGTTAATGTTGTT+TGG - tig0020787:46629-46648 None:intergenic 25.0%
! ATTATAGTTTAGACCATCAT+TGG - tig0020787:46754-46773 None:intergenic 25.0%
! ATGAGTTTCTAAGTAGTATT+TGG + tig0020787:45411-45430 Msa1386130:intron 25.0%
! ATTGATATGAATGGTTTAAG+AGG + tig0020787:46172-46191 Msa1386130:CDS 25.0%
! GAAAGAAAATTGTGTTACAA+AGG - tig0020787:46516-46535 None:intergenic 25.0%
! CTGTAATAGTTAATGTTGTT+TGG - tig0020787:46629-46648 None:intergenic 25.0%
! ATTATAGTTTAGACCATCAT+TGG - tig0020787:46754-46773 None:intergenic 25.0%
! GTTGTTGCTGTTATTATTGT+TGG - tig0020787:45468-45487 None:intergenic 30.0%
TCCTAATAACAACTCTACAA+TGG + tig0020787:45829-45848 Msa1386130:CDS 30.0%
! CAATTTGGGATTGATATGAA+TGG + tig0020787:46163-46182 Msa1386130:CDS 30.0%
! ATTTTCTTTCTTGCTTATGC+AGG + tig0020787:46526-46545 Msa1386130:intron 30.0%
! TCATGCTTCTTTTATTCTTC+AGG + tig0020787:46695-46714 Msa1386130:intron 30.0%
! GTTGTTGCTGTTATTATTGT+TGG - tig0020787:45468-45487 None:intergenic 30.0%
TCCTAATAACAACTCTACAA+TGG + tig0020787:45829-45848 Msa1386130:CDS 30.0%
! CAATTTGGGATTGATATGAA+TGG + tig0020787:46163-46182 Msa1386130:CDS 30.0%
! ATTTTCTTTCTTGCTTATGC+AGG + tig0020787:46526-46545 Msa1386130:intron 30.0%
! TCATGCTTCTTTTATTCTTC+AGG + tig0020787:46695-46714 Msa1386130:intron 30.0%
TAAGAGAAGGTGAGATGAAT+TGG + tig0020787:45210-45229 Msa1386130:CDS 35.0%
! AATGTCATTTCTTCATCGCT+TGG + tig0020787:45296-45315 Msa1386130:CDS 35.0%
TAGAAACTCATCCATGTTCA+TGG - tig0020787:45402-45421 None:intergenic 35.0%
! CAGGAATCGATAACGAATTT+TGG - tig0020787:45544-45563 None:intergenic 35.0%
GGAAAACTGTTGAACAAGTT+TGG + tig0020787:45576-45595 Msa1386130:CDS 35.0%
CAACATTGTTGATGTTGTGA+TGG - tig0020787:45628-45647 None:intergenic 35.0%
AGGATTTCTTGGTTAAAGCA+GGG + tig0020787:45702-45721 Msa1386130:CDS 35.0%
! GTTGTTATTAGGATACACTG+CGG - tig0020787:45822-45841 None:intergenic 35.0%
! GCCATTGTAGAGTTGTTATT+AGG - tig0020787:45833-45852 None:intergenic 35.0%
ATGGTTTAAGAGGAAGAAAG+AGG + tig0020787:46182-46201 Msa1386130:CDS 35.0%
TTTAAGAGGAAGAAAGAGGA+TGG + tig0020787:46186-46205 Msa1386130:CDS 35.0%
! AATTTCAGGAACCTGTTTTC+TGG - tig0020787:46293-46312 None:intergenic 35.0%
AGAGAATTCTCAACTGAAAC+AGG + tig0020787:46592-46611 Msa1386130:CDS 35.0%
GTGATTCAACTATACTGACA+AGG + tig0020787:46671-46690 Msa1386130:intron 35.0%
AAAGCAAAAGAGAAACTGAG+AGG + tig0020787:46899-46918 Msa1386130:CDS 35.0%
TAAGAGAAGGTGAGATGAAT+TGG + tig0020787:45210-45229 Msa1386130:CDS 35.0%
! AATGTCATTTCTTCATCGCT+TGG + tig0020787:45296-45315 Msa1386130:CDS 35.0%
TAGAAACTCATCCATGTTCA+TGG - tig0020787:45402-45421 None:intergenic 35.0%
! CAGGAATCGATAACGAATTT+TGG - tig0020787:45544-45563 None:intergenic 35.0%
GGAAAACTGTTGAACAAGTT+TGG + tig0020787:45576-45595 Msa1386130:CDS 35.0%
CAACATTGTTGATGTTGTGA+TGG - tig0020787:45628-45647 None:intergenic 35.0%
AGGATTTCTTGGTTAAAGCA+GGG + tig0020787:45702-45721 Msa1386130:CDS 35.0%
! GTTGTTATTAGGATACACTG+CGG - tig0020787:45822-45841 None:intergenic 35.0%
! GCCATTGTAGAGTTGTTATT+AGG - tig0020787:45833-45852 None:intergenic 35.0%
ATGGTTTAAGAGGAAGAAAG+AGG + tig0020787:46182-46201 Msa1386130:CDS 35.0%
TTTAAGAGGAAGAAAGAGGA+TGG + tig0020787:46186-46205 Msa1386130:CDS 35.0%
! AATTTCAGGAACCTGTTTTC+TGG - tig0020787:46293-46312 None:intergenic 35.0%
AGAGAATTCTCAACTGAAAC+AGG + tig0020787:46592-46611 Msa1386130:CDS 35.0%
GTGATTCAACTATACTGACA+AGG + tig0020787:46671-46690 Msa1386130:intron 35.0%
AAAGCAAAAGAGAAACTGAG+AGG + tig0020787:46899-46918 Msa1386130:CDS 35.0%
GTGAGATGAATTGGCAACAA+GGG + tig0020787:45219-45238 Msa1386130:CDS 40.0%
TGAGATGAATTGGCAACAAG+GGG + tig0020787:45220-45239 Msa1386130:CDS 40.0%
! TCAGAAAGGGATTAGCAAAC+AGG + tig0020787:45505-45524 Msa1386130:CDS 40.0%
!! ATCGATAACGAATTTTGGCG+AGG - tig0020787:45539-45558 None:intergenic 40.0%
AATGTCATCTCGCCAAAAGT+CGG - tig0020787:45680-45699 None:intergenic 40.0%
GATGACATTGGAGGATTTCT+TGG + tig0020787:45691-45710 Msa1386130:CDS 40.0%
GAGGATTTCTTGGTTAAAGC+AGG + tig0020787:45701-45720 Msa1386130:CDS 40.0%
GGATTTCTTGGTTAAAGCAG+GGG + tig0020787:45703-45722 Msa1386130:CDS 40.0%
TAACAACTCTACAATGGCTC+AGG + tig0020787:45835-45854 Msa1386130:CDS 40.0%
ATGTTGGGAATGGTAAGACT+AGG + tig0020787:45969-45988 Msa1386130:CDS 40.0%
TGTTGGGAATGGTAAGACTA+GGG + tig0020787:45970-45989 Msa1386130:CDS 40.0%
GGTAAGACTAGGGATAGTAT+AGG + tig0020787:45980-45999 Msa1386130:CDS 40.0%
GACTAGGGATAGTATAGGTA+CGG + tig0020787:45985-46004 Msa1386130:CDS 40.0%
ACTAGGGATAGTATAGGTAC+GGG + tig0020787:45986-46005 Msa1386130:CDS 40.0%
TGGGATTGGAAACGAAAACT+CGG + tig0020787:46135-46154 Msa1386130:CDS 40.0%
AAAACTCGGGTGGTCAATTT+GGG + tig0020787:46149-46168 Msa1386130:CDS 40.0%
! AAGATCTAGAGCCAGAAAAC+AGG + tig0020787:46279-46298 Msa1386130:CDS 40.0%
AGACAACAGGTAACCAATGA+TGG + tig0020787:46738-46757 Msa1386130:intron 40.0%
TTACCTCATGCAGTGTTTAG+AGG + tig0020787:46844-46863 Msa1386130:intron 40.0%
TTTCCTCTAAACACTGCATG+AGG - tig0020787:46850-46869 None:intergenic 40.0%
! CTCTTTTGCTTTCTGAGCTT+TGG - tig0020787:46891-46910 None:intergenic 40.0%
AGAAACTGAGAGGCTTAAGA+AGG + tig0020787:46909-46928 Msa1386130:CDS 40.0%
GTGAGATGAATTGGCAACAA+GGG + tig0020787:45219-45238 Msa1386130:CDS 40.0%
TGAGATGAATTGGCAACAAG+GGG + tig0020787:45220-45239 Msa1386130:CDS 40.0%
! TCAGAAAGGGATTAGCAAAC+AGG + tig0020787:45505-45524 Msa1386130:CDS 40.0%
!! ATCGATAACGAATTTTGGCG+AGG - tig0020787:45539-45558 None:intergenic 40.0%
AATGTCATCTCGCCAAAAGT+CGG - tig0020787:45680-45699 None:intergenic 40.0%
GATGACATTGGAGGATTTCT+TGG + tig0020787:45691-45710 Msa1386130:CDS 40.0%
GAGGATTTCTTGGTTAAAGC+AGG + tig0020787:45701-45720 Msa1386130:CDS 40.0%
GGATTTCTTGGTTAAAGCAG+GGG + tig0020787:45703-45722 Msa1386130:CDS 40.0%
TAACAACTCTACAATGGCTC+AGG + tig0020787:45835-45854 Msa1386130:CDS 40.0%
ATGTTGGGAATGGTAAGACT+AGG + tig0020787:45969-45988 Msa1386130:CDS 40.0%
TGTTGGGAATGGTAAGACTA+GGG + tig0020787:45970-45989 Msa1386130:CDS 40.0%
GGTAAGACTAGGGATAGTAT+AGG + tig0020787:45980-45999 Msa1386130:CDS 40.0%
GACTAGGGATAGTATAGGTA+CGG + tig0020787:45985-46004 Msa1386130:CDS 40.0%
ACTAGGGATAGTATAGGTAC+GGG + tig0020787:45986-46005 Msa1386130:CDS 40.0%
TGGGATTGGAAACGAAAACT+CGG + tig0020787:46135-46154 Msa1386130:CDS 40.0%
AAAACTCGGGTGGTCAATTT+GGG + tig0020787:46149-46168 Msa1386130:CDS 40.0%
! AAGATCTAGAGCCAGAAAAC+AGG + tig0020787:46279-46298 Msa1386130:CDS 40.0%
AGACAACAGGTAACCAATGA+TGG + tig0020787:46738-46757 Msa1386130:intron 40.0%
TTACCTCATGCAGTGTTTAG+AGG + tig0020787:46844-46863 Msa1386130:intron 40.0%
TTTCCTCTAAACACTGCATG+AGG - tig0020787:46850-46869 None:intergenic 40.0%
! CTCTTTTGCTTTCTGAGCTT+TGG - tig0020787:46891-46910 None:intergenic 40.0%
AGAAACTGAGAGGCTTAAGA+AGG + tig0020787:46909-46928 Msa1386130:CDS 40.0%
GGTGAGATGAATTGGCAACA+AGG + tig0020787:45218-45237 Msa1386130:CDS 45.0%
GGAGGTAGAATCATTGCAGA+GGG + tig0020787:45241-45260 Msa1386130:CDS 45.0%
GTAGAATCATTGCAGAGGGA+AGG + tig0020787:45245-45264 Msa1386130:CDS 45.0%
GTCGAGGGTGAGTGAATATA+TGG - tig0020787:45336-45355 None:intergenic 45.0%
TGTGACAGCGGCAAGAATTT+CGG + tig0020787:45374-45393 Msa1386130:CDS 45.0%
! GAATTTCGGGTCCATGAACA+TGG + tig0020787:45388-45407 Msa1386130:CDS 45.0%
!! TGTTGGATGCAGCTTGTTGT+TGG - tig0020787:45451-45470 None:intergenic 45.0%
AACTTGTCTGCAGCTCAGAA+AGG + tig0020787:45491-45510 Msa1386130:CDS 45.0%
ACTTGTCTGCAGCTCAGAAA+GGG + tig0020787:45492-45511 Msa1386130:CDS 45.0%
! TCAACAGTTTTCCTGCAGAG+AGG - tig0020787:45569-45588 None:intergenic 45.0%
! GACTTTTGGCGAGATGACAT+TGG + tig0020787:45679-45698 Msa1386130:CDS 45.0%
! TTTTGGCGAGATGACATTGG+AGG + tig0020787:45682-45701 Msa1386130:CDS 45.0%
TGGTTAAAGCAGGGGTAGTT+AGG + tig0020787:45711-45730 Msa1386130:CDS 45.0%
GGTTAAAGCAGGGGTAGTTA+GGG + tig0020787:45712-45731 Msa1386130:CDS 45.0%
GTAGTTAGGGAACAACAGTC+TGG + tig0020787:45725-45744 Msa1386130:CDS 45.0%
!! CAGGCTGCTTCATTTGCTAT+TGG + tig0020787:45854-45873 Msa1386130:CDS 45.0%
!! GCTGCTTCATTTGCTATTGG+CGG + tig0020787:45857-45876 Msa1386130:CDS 45.0%
CTAGGGATAGTATAGGTACG+GGG + tig0020787:45987-46006 Msa1386130:CDS 45.0%
ACCTGTTAGTCCGGTTTCTT+CGG + tig0020787:46111-46130 Msa1386130:CDS 45.0%
TTAGTCCGGTTTCTTCGGAT+GGG + tig0020787:46116-46135 Msa1386130:CDS 45.0%
GGGATTGGAAACGAAAACTC+GGG + tig0020787:46136-46155 Msa1386130:CDS 45.0%
ATTGGAAACGAAAACTCGGG+TGG + tig0020787:46139-46158 Msa1386130:CDS 45.0%
GAAAACTCGGGTGGTCAATT+TGG + tig0020787:46148-46167 Msa1386130:CDS 45.0%
GGAAGAAAGAGGATGGTTGA+TGG + tig0020787:46193-46212 Msa1386130:CDS 45.0%
!! TGGTTGATGGTCCTGTTGAA+AGG + tig0020787:46206-46225 Msa1386130:CDS 45.0%
!! GGTTGATGGTCCTGTTGAAA+GGG + tig0020787:46207-46226 Msa1386130:CDS 45.0%
TTCTCAACTGAAACAGGCAC+TGG + tig0020787:46598-46617 Msa1386130:CDS 45.0%
TTCTTCAGGCTGAACTAGAG+AGG + tig0020787:46709-46728 Msa1386130:intron 45.0%
AGAGAGGAGAAGAAGACAAC+AGG + tig0020787:46725-46744 Msa1386130:CDS 45.0%
GGTGAGATGAATTGGCAACA+AGG + tig0020787:45218-45237 Msa1386130:CDS 45.0%
GGAGGTAGAATCATTGCAGA+GGG + tig0020787:45241-45260 Msa1386130:CDS 45.0%
GTAGAATCATTGCAGAGGGA+AGG + tig0020787:45245-45264 Msa1386130:CDS 45.0%
GTCGAGGGTGAGTGAATATA+TGG - tig0020787:45336-45355 None:intergenic 45.0%
TGTGACAGCGGCAAGAATTT+CGG + tig0020787:45374-45393 Msa1386130:CDS 45.0%
! GAATTTCGGGTCCATGAACA+TGG + tig0020787:45388-45407 Msa1386130:CDS 45.0%
!! TGTTGGATGCAGCTTGTTGT+TGG - tig0020787:45451-45470 None:intergenic 45.0%
AACTTGTCTGCAGCTCAGAA+AGG + tig0020787:45491-45510 Msa1386130:CDS 45.0%
ACTTGTCTGCAGCTCAGAAA+GGG + tig0020787:45492-45511 Msa1386130:CDS 45.0%
! TCAACAGTTTTCCTGCAGAG+AGG - tig0020787:45569-45588 None:intergenic 45.0%
! GACTTTTGGCGAGATGACAT+TGG + tig0020787:45679-45698 Msa1386130:CDS 45.0%
! TTTTGGCGAGATGACATTGG+AGG + tig0020787:45682-45701 Msa1386130:CDS 45.0%
TGGTTAAAGCAGGGGTAGTT+AGG + tig0020787:45711-45730 Msa1386130:CDS 45.0%
GGTTAAAGCAGGGGTAGTTA+GGG + tig0020787:45712-45731 Msa1386130:CDS 45.0%
GTAGTTAGGGAACAACAGTC+TGG + tig0020787:45725-45744 Msa1386130:CDS 45.0%
!! CAGGCTGCTTCATTTGCTAT+TGG + tig0020787:45854-45873 Msa1386130:CDS 45.0%
!! GCTGCTTCATTTGCTATTGG+CGG + tig0020787:45857-45876 Msa1386130:CDS 45.0%
CTAGGGATAGTATAGGTACG+GGG + tig0020787:45987-46006 Msa1386130:CDS 45.0%
ACCTGTTAGTCCGGTTTCTT+CGG + tig0020787:46111-46130 Msa1386130:CDS 45.0%
TTAGTCCGGTTTCTTCGGAT+GGG + tig0020787:46116-46135 Msa1386130:CDS 45.0%
GGGATTGGAAACGAAAACTC+GGG + tig0020787:46136-46155 Msa1386130:CDS 45.0%
ATTGGAAACGAAAACTCGGG+TGG + tig0020787:46139-46158 Msa1386130:CDS 45.0%
GAAAACTCGGGTGGTCAATT+TGG + tig0020787:46148-46167 Msa1386130:CDS 45.0%
GGAAGAAAGAGGATGGTTGA+TGG + tig0020787:46193-46212 Msa1386130:CDS 45.0%
!! TGGTTGATGGTCCTGTTGAA+AGG + tig0020787:46206-46225 Msa1386130:CDS 45.0%
!! GGTTGATGGTCCTGTTGAAA+GGG + tig0020787:46207-46226 Msa1386130:CDS 45.0%
TTCTCAACTGAAACAGGCAC+TGG + tig0020787:46598-46617 Msa1386130:CDS 45.0%
TTCTTCAGGCTGAACTAGAG+AGG + tig0020787:46709-46728 Msa1386130:intron 45.0%
AGAGAGGAGAAGAAGACAAC+AGG + tig0020787:46725-46744 Msa1386130:CDS 45.0%
GATGAATTGGCAACAAGGGG+AGG + tig0020787:45223-45242 Msa1386130:CDS 50.0%
GGGAGGTAGAATCATTGCAG+AGG + tig0020787:45240-45259 Msa1386130:CDS 50.0%
AATTCTTGCCGCTGTCACAG+AGG - tig0020787:45373-45392 None:intergenic 50.0%
GTGACAGCGGCAAGAATTTC+GGG + tig0020787:45375-45394 Msa1386130:CDS 50.0%
GGAACAACAGTCTGGTATGC+CGG + tig0020787:45733-45752 Msa1386130:CDS 50.0%
!! GCTTCATTTGCTATTGGCGG+CGG + tig0020787:45860-45879 Msa1386130:CDS 50.0%
!! GGTTTGTTATGGAGGGAGAG+TGG + tig0020787:46030-46049 Msa1386130:CDS 50.0%
TATGGAGGGAGAGTGGTGAA+TGG + tig0020787:46037-46056 Msa1386130:CDS 50.0%
TGTGGCAGTGGCACAAACTA+TGG + tig0020787:46078-46097 Msa1386130:CDS 50.0%
GTGGCAGTGGCACAAACTAT+GGG + tig0020787:46079-46098 Msa1386130:CDS 50.0%
TGGCAGTGGCACAAACTATG+GGG + tig0020787:46080-46099 Msa1386130:CDS 50.0%
AGTGGCACAAACTATGGGGA+TGG + tig0020787:46084-46103 Msa1386130:CDS 50.0%
GTGGCACAAACTATGGGGAT+GGG + tig0020787:46085-46104 Msa1386130:CDS 50.0%
TCCGAAGAAACCGGACTAAC+AGG - tig0020787:46115-46134 None:intergenic 50.0%
GTTAGTCCGGTTTCTTCGGA+TGG + tig0020787:46115-46134 Msa1386130:CDS 50.0%
CCAATCCCATCCGAAGAAAC+CGG - tig0020787:46124-46143 None:intergenic 50.0%
TGATGGTCCTGTTGAAAGGG+TGG + tig0020787:46210-46229 Msa1386130:CDS 50.0%
!! TTGAAAGGGTGGTGGAGAGA+AGG + tig0020787:46221-46240 Msa1386130:CDS 50.0%
GATGAATTGGCAACAAGGGG+AGG + tig0020787:45223-45242 Msa1386130:CDS 50.0%
GGGAGGTAGAATCATTGCAG+AGG + tig0020787:45240-45259 Msa1386130:CDS 50.0%
AATTCTTGCCGCTGTCACAG+AGG - tig0020787:45373-45392 None:intergenic 50.0%
GTGACAGCGGCAAGAATTTC+GGG + tig0020787:45375-45394 Msa1386130:CDS 50.0%
GGAACAACAGTCTGGTATGC+CGG + tig0020787:45733-45752 Msa1386130:CDS 50.0%
!! GCTTCATTTGCTATTGGCGG+CGG + tig0020787:45860-45879 Msa1386130:CDS 50.0%
!! GGTTTGTTATGGAGGGAGAG+TGG + tig0020787:46030-46049 Msa1386130:CDS 50.0%
TATGGAGGGAGAGTGGTGAA+TGG + tig0020787:46037-46056 Msa1386130:CDS 50.0%
TGTGGCAGTGGCACAAACTA+TGG + tig0020787:46078-46097 Msa1386130:CDS 50.0%
GTGGCAGTGGCACAAACTAT+GGG + tig0020787:46079-46098 Msa1386130:CDS 50.0%
TGGCAGTGGCACAAACTATG+GGG + tig0020787:46080-46099 Msa1386130:CDS 50.0%
AGTGGCACAAACTATGGGGA+TGG + tig0020787:46084-46103 Msa1386130:CDS 50.0%
GTGGCACAAACTATGGGGAT+GGG + tig0020787:46085-46104 Msa1386130:CDS 50.0%
TCCGAAGAAACCGGACTAAC+AGG - tig0020787:46115-46134 None:intergenic 50.0%
GTTAGTCCGGTTTCTTCGGA+TGG + tig0020787:46115-46134 Msa1386130:CDS 50.0%
CCAATCCCATCCGAAGAAAC+CGG - tig0020787:46124-46143 None:intergenic 50.0%
TGATGGTCCTGTTGAAAGGG+TGG + tig0020787:46210-46229 Msa1386130:CDS 50.0%
!! TTGAAAGGGTGGTGGAGAGA+AGG + tig0020787:46221-46240 Msa1386130:CDS 50.0%
GGGAAGGAGAAGAAGCGATC+AGG + tig0020787:45261-45280 Msa1386130:CDS 55.0%
GCTGTGTTGGAACTCGTCGA+GGG - tig0020787:45351-45370 None:intergenic 55.0%
CAACACAGCCTCTGTGACAG+CGG + tig0020787:45362-45381 Msa1386130:CDS 55.0%
!! GTTTTCCTGCAGAGAGGTGC+AGG - tig0020787:45563-45582 None:intergenic 55.0%
!! ACCCCTCGACAACCGACTTT+TGG + tig0020787:45665-45684 Msa1386130:CDS 55.0%
GCCAAAAGTCGGTTGTCGAG+GGG - tig0020787:45669-45688 None:intergenic 55.0%
CGCCAAAAGTCGGTTGTCGA+GGG - tig0020787:45670-45689 None:intergenic 55.0%
TCGCCAAAAGTCGGTTGTCG+AGG - tig0020787:45671-45690 None:intergenic 55.0%
GTGAGATGACACTGCTGCTG+CGG - tig0020787:45780-45799 None:intergenic 55.0%
CAGCAGCAGTGTCATCTCAC+CGG + tig0020787:45780-45799 Msa1386130:CDS 55.0%
!! TCATTTGCTATTGGCGGCGG+CGG + tig0020787:45863-45882 Msa1386130:CDS 55.0%
TGTGCCACCGTTTGGTATGG+CGG - tig0020787:45911-45930 None:intergenic 55.0%
CCATACCAAACGGTGGCACA+GGG + tig0020787:45911-45930 Msa1386130:CDS 55.0%
TGGAGGAGTTGGAGAGCCTT+CGG + tig0020787:45937-45956 Msa1386130:CDS 55.0%
! AGTTGGAGAGCCTTCGGGTT+CGG + tig0020787:45943-45962 Msa1386130:CDS 55.0%
! CTTCGGGTTCGGGGTATGTT+GGG + tig0020787:45954-45973 Msa1386130:CDS 55.0%
GGTTCGGGGTATGTTGGGAA+TGG + tig0020787:45959-45978 Msa1386130:CDS 55.0%
CCTCCATAACAAACCGCTGG+CGG - tig0020787:46025-46044 None:intergenic 55.0%
!! CGCCAGCGGTTTGTTATGGA+GGG + tig0020787:46023-46042 Msa1386130:CDS 55.0%
CTCCCTCCATAACAAACCGC+TGG - tig0020787:46028-46047 None:intergenic 55.0%
GAGGGAGAGTGGTGAATGGA+GGG + tig0020787:46041-46060 Msa1386130:CDS 55.0%
AGGGAGAGTGGTGAATGGAG+GGG + tig0020787:46042-46061 Msa1386130:CDS 55.0%
GCACAAACTATGGGGATGGG+CGG + tig0020787:46088-46107 Msa1386130:CDS 55.0%
CCGGTTTCTTCGGATGGGAT+TGG + tig0020787:46121-46140 Msa1386130:CDS 55.0%
TGGTCCTGTTGAAAGGGTGG+TGG + tig0020787:46213-46232 Msa1386130:CDS 55.0%
CTCTCCACCACCCTTTCAAC+AGG - tig0020787:46220-46239 None:intergenic 55.0%
GGGAAGGAGAAGAAGCGATC+AGG + tig0020787:45261-45280 Msa1386130:CDS 55.0%
GCTGTGTTGGAACTCGTCGA+GGG - tig0020787:45351-45370 None:intergenic 55.0%
CAACACAGCCTCTGTGACAG+CGG + tig0020787:45362-45381 Msa1386130:CDS 55.0%
!! GTTTTCCTGCAGAGAGGTGC+AGG - tig0020787:45563-45582 None:intergenic 55.0%
!! ACCCCTCGACAACCGACTTT+TGG + tig0020787:45665-45684 Msa1386130:CDS 55.0%
GCCAAAAGTCGGTTGTCGAG+GGG - tig0020787:45669-45688 None:intergenic 55.0%
CGCCAAAAGTCGGTTGTCGA+GGG - tig0020787:45670-45689 None:intergenic 55.0%
TCGCCAAAAGTCGGTTGTCG+AGG - tig0020787:45671-45690 None:intergenic 55.0%
GTGAGATGACACTGCTGCTG+CGG - tig0020787:45780-45799 None:intergenic 55.0%
CAGCAGCAGTGTCATCTCAC+CGG + tig0020787:45780-45799 Msa1386130:CDS 55.0%
!! TCATTTGCTATTGGCGGCGG+CGG + tig0020787:45863-45882 Msa1386130:CDS 55.0%
TGTGCCACCGTTTGGTATGG+CGG - tig0020787:45911-45930 None:intergenic 55.0%
CCATACCAAACGGTGGCACA+GGG + tig0020787:45911-45930 Msa1386130:CDS 55.0%
TGGAGGAGTTGGAGAGCCTT+CGG + tig0020787:45937-45956 Msa1386130:CDS 55.0%
! AGTTGGAGAGCCTTCGGGTT+CGG + tig0020787:45943-45962 Msa1386130:CDS 55.0%
! CTTCGGGTTCGGGGTATGTT+GGG + tig0020787:45954-45973 Msa1386130:CDS 55.0%
GGTTCGGGGTATGTTGGGAA+TGG + tig0020787:45959-45978 Msa1386130:CDS 55.0%
CCTCCATAACAAACCGCTGG+CGG - tig0020787:46025-46044 None:intergenic 55.0%
!! CGCCAGCGGTTTGTTATGGA+GGG + tig0020787:46023-46042 Msa1386130:CDS 55.0%
CTCCCTCCATAACAAACCGC+TGG - tig0020787:46028-46047 None:intergenic 55.0%
GAGGGAGAGTGGTGAATGGA+GGG + tig0020787:46041-46060 Msa1386130:CDS 55.0%
AGGGAGAGTGGTGAATGGAG+GGG + tig0020787:46042-46061 Msa1386130:CDS 55.0%
GCACAAACTATGGGGATGGG+CGG + tig0020787:46088-46107 Msa1386130:CDS 55.0%
CCGGTTTCTTCGGATGGGAT+TGG + tig0020787:46121-46140 Msa1386130:CDS 55.0%
TGGTCCTGTTGAAAGGGTGG+TGG + tig0020787:46213-46232 Msa1386130:CDS 55.0%
CTCTCCACCACCCTTTCAAC+AGG - tig0020787:46220-46239 None:intergenic 55.0%
GGCTGTGTTGGAACTCGTCG+AGG - tig0020787:45352-45371 None:intergenic 60.0%
CGCTGTCACAGAGGCTGTGT+TGG - tig0020787:45364-45383 None:intergenic 60.0%
CGATTCCTGCACCTCTCTGC+AGG + tig0020787:45555-45574 Msa1386130:CDS 60.0%
CGGTTGTCGAGGGGTAGACT+CGG - tig0020787:45660-45679 None:intergenic 60.0%
!! GGTGGTGGTGCTATGGCAAC+CGG - tig0020787:45755-45774 None:intergenic 60.0%
ACTGCGGCGTAATGCTGCTG+GGG - tig0020787:45806-45825 None:intergenic 60.0%
CACTGCGGCGTAATGCTGCT+GGG - tig0020787:45807-45826 None:intergenic 60.0%
ACACTGCGGCGTAATGCTGC+TGG - tig0020787:45808-45827 None:intergenic 60.0%
GGTTGCGCCGCCATACCAAA+CGG + tig0020787:45901-45920 Msa1386130:CDS 60.0%
GCCATACCAAACGGTGGCAC+AGG + tig0020787:45910-45929 Msa1386130:CDS 60.0%
CCCTGTGCCACCGTTTGGTA+TGG - tig0020787:45914-45933 None:intergenic 60.0%
TACCAAACGGTGGCACAGGG+AGG + tig0020787:45914-45933 Msa1386130:CDS 60.0%
GGAGGAGTTGGAGAGCCTTC+GGG + tig0020787:45938-45957 Msa1386130:CDS 60.0%
! GTTGGAGAGCCTTCGGGTTC+GGG + tig0020787:45944-45963 Msa1386130:CDS 60.0%
! TTGGAGAGCCTTCGGGTTCG+GGG + tig0020787:45945-45964 Msa1386130:CDS 60.0%
CCAACATACCCCGAACCCGA+AGG - tig0020787:45956-45975 None:intergenic 60.0%
! CCTTCGGGTTCGGGGTATGT+TGG + tig0020787:45953-45972 Msa1386130:CDS 60.0%
CCATAACAAACCGCTGGCGG+CGG - tig0020787:46022-46041 None:intergenic 60.0%
!! CCGCCAGCGGTTTGTTATGG+AGG + tig0020787:46022-46041 Msa1386130:CDS 60.0%
GGAGGGAGAGTGGTGAATGG+AGG + tig0020787:46040-46059 Msa1386130:CDS 60.0%
GAGAGTGGTGAATGGAGGGG+CGG + tig0020787:46045-46064 Msa1386130:CDS 60.0%
AGAGTGGTGAATGGAGGGGC+GGG + tig0020787:46046-46065 Msa1386130:CDS 60.0%
GATGGGCGGACCTGTTAGTC+CGG + tig0020787:46102-46121 Msa1386130:CDS 60.0%
TGGTGGAGAGAAGGCAGAGG+AGG + tig0020787:46230-46249 Msa1386130:CDS 60.0%
GGCTGTGTTGGAACTCGTCG+AGG - tig0020787:45352-45371 None:intergenic 60.0%
CGCTGTCACAGAGGCTGTGT+TGG - tig0020787:45364-45383 None:intergenic 60.0%
CGATTCCTGCACCTCTCTGC+AGG + tig0020787:45555-45574 Msa1386130:CDS 60.0%
CGGTTGTCGAGGGGTAGACT+CGG - tig0020787:45660-45679 None:intergenic 60.0%
!! GGTGGTGGTGCTATGGCAAC+CGG - tig0020787:45755-45774 None:intergenic 60.0%
ACTGCGGCGTAATGCTGCTG+GGG - tig0020787:45806-45825 None:intergenic 60.0%
CACTGCGGCGTAATGCTGCT+GGG - tig0020787:45807-45826 None:intergenic 60.0%
ACACTGCGGCGTAATGCTGC+TGG - tig0020787:45808-45827 None:intergenic 60.0%
GGTTGCGCCGCCATACCAAA+CGG + tig0020787:45901-45920 Msa1386130:CDS 60.0%
GCCATACCAAACGGTGGCAC+AGG + tig0020787:45910-45929 Msa1386130:CDS 60.0%
CCCTGTGCCACCGTTTGGTA+TGG - tig0020787:45914-45933 None:intergenic 60.0%
TACCAAACGGTGGCACAGGG+AGG + tig0020787:45914-45933 Msa1386130:CDS 60.0%
GGAGGAGTTGGAGAGCCTTC+GGG + tig0020787:45938-45957 Msa1386130:CDS 60.0%
! GTTGGAGAGCCTTCGGGTTC+GGG + tig0020787:45944-45963 Msa1386130:CDS 60.0%
! TTGGAGAGCCTTCGGGTTCG+GGG + tig0020787:45945-45964 Msa1386130:CDS 60.0%
CCAACATACCCCGAACCCGA+AGG - tig0020787:45956-45975 None:intergenic 60.0%
! CCTTCGGGTTCGGGGTATGT+TGG + tig0020787:45953-45972 Msa1386130:CDS 60.0%
CCATAACAAACCGCTGGCGG+CGG - tig0020787:46022-46041 None:intergenic 60.0%
!! CCGCCAGCGGTTTGTTATGG+AGG + tig0020787:46022-46041 Msa1386130:CDS 60.0%
GGAGGGAGAGTGGTGAATGG+AGG + tig0020787:46040-46059 Msa1386130:CDS 60.0%
GAGAGTGGTGAATGGAGGGG+CGG + tig0020787:46045-46064 Msa1386130:CDS 60.0%
AGAGTGGTGAATGGAGGGGC+GGG + tig0020787:46046-46065 Msa1386130:CDS 60.0%
GATGGGCGGACCTGTTAGTC+CGG + tig0020787:46102-46121 Msa1386130:CDS 60.0%
TGGTGGAGAGAAGGCAGAGG+AGG + tig0020787:46230-46249 Msa1386130:CDS 60.0%
! TGCGGCAGGTGGTGGTGCTA+TGG - tig0020787:45762-45781 None:intergenic 65.0%
GATGACACTGCTGCTGCGGC+AGG - tig0020787:45776-45795 None:intergenic 65.0%
!! TTTGCTATTGGCGGCGGCGG+CGG + tig0020787:45866-45885 Msa1386130:CDS 65.0%
CGGCGGCGGGAATCTGAATG+TGG + tig0020787:45880-45899 Msa1386130:CDS 65.0%
TGCGCCGCCATACCAAACGG+TGG + tig0020787:45904-45923 Msa1386130:CDS 65.0%
CACCTCCCTGTGCCACCGTT+TGG - tig0020787:45919-45938 None:intergenic 65.0%
CAAACGGTGGCACAGGGAGG+TGG + tig0020787:45917-45936 Msa1386130:CDS 65.0%
GCACAGGGAGGTGGAGGAGT+TGG + tig0020787:45926-45945 Msa1386130:CDS 65.0%
TAACAAACCGCTGGCGGCGG+CGG - tig0020787:46019-46038 None:intergenic 65.0%
!! CCGCCGCCAGCGGTTTGTTA+TGG + tig0020787:46019-46038 Msa1386130:CDS 65.0%
AATGGAGGGGCGGGCGGTTA+TGG + tig0020787:46055-46074 Msa1386130:CDS 65.0%
GGGCGGTTATGGTGTGGCAG+TGG + tig0020787:46066-46085 Msa1386130:CDS 65.0%
!! GGGTGGTGGAGAGAAGGCAG+AGG + tig0020787:46227-46246 Msa1386130:CDS 65.0%
! TGCGGCAGGTGGTGGTGCTA+TGG - tig0020787:45762-45781 None:intergenic 65.0%
GATGACACTGCTGCTGCGGC+AGG - tig0020787:45776-45795 None:intergenic 65.0%
!! TTTGCTATTGGCGGCGGCGG+CGG + tig0020787:45866-45885 Msa1386130:CDS 65.0%
CGGCGGCGGGAATCTGAATG+TGG + tig0020787:45880-45899 Msa1386130:CDS 65.0%
TGCGCCGCCATACCAAACGG+TGG + tig0020787:45904-45923 Msa1386130:CDS 65.0%
CACCTCCCTGTGCCACCGTT+TGG - tig0020787:45919-45938 None:intergenic 65.0%
CAAACGGTGGCACAGGGAGG+TGG + tig0020787:45917-45936 Msa1386130:CDS 65.0%
GCACAGGGAGGTGGAGGAGT+TGG + tig0020787:45926-45945 Msa1386130:CDS 65.0%
TAACAAACCGCTGGCGGCGG+CGG - tig0020787:46019-46038 None:intergenic 65.0%
!! CCGCCGCCAGCGGTTTGTTA+TGG + tig0020787:46019-46038 Msa1386130:CDS 65.0%
AATGGAGGGGCGGGCGGTTA+TGG + tig0020787:46055-46074 Msa1386130:CDS 65.0%
GGGCGGTTATGGTGTGGCAG+TGG + tig0020787:46066-46085 Msa1386130:CDS 65.0%
!! GGGTGGTGGAGAGAAGGCAG+AGG + tig0020787:46227-46246 Msa1386130:CDS 65.0%
ACTGCTGCTGCGGCAGGTGG+TGG - tig0020787:45770-45789 None:intergenic 70.0%
GACACTGCTGCTGCGGCAGG+TGG - tig0020787:45773-45792 None:intergenic 70.0%
CGGCGTAATGCTGCTGGGGC+CGG - tig0020787:45802-45821 None:intergenic 70.0%
! TTGCTATTGGCGGCGGCGGC+GGG + tig0020787:45867-45886 Msa1386130:CDS 70.0%
ACGGTGGCACAGGGAGGTGG+AGG + tig0020787:45920-45939 Msa1386130:CDS 70.0%
GTGGTGAATGGAGGGGCGGG+CGG + tig0020787:46049-46068 Msa1386130:CDS 70.0%
AGGGGCGGGCGGTTATGGTG+TGG + tig0020787:46060-46079 Msa1386130:CDS 70.0%
ACTGCTGCTGCGGCAGGTGG+TGG - tig0020787:45770-45789 None:intergenic 70.0%
GACACTGCTGCTGCGGCAGG+TGG - tig0020787:45773-45792 None:intergenic 70.0%
CGGCGTAATGCTGCTGGGGC+CGG - tig0020787:45802-45821 None:intergenic 70.0%
! TTGCTATTGGCGGCGGCGGC+GGG + tig0020787:45867-45886 Msa1386130:CDS 70.0%
ACGGTGGCACAGGGAGGTGG+AGG + tig0020787:45920-45939 Msa1386130:CDS 70.0%
GTGGTGAATGGAGGGGCGGG+CGG + tig0020787:46049-46068 Msa1386130:CDS 70.0%
AGGGGCGGGCGGTTATGGTG+TGG + tig0020787:46060-46079 Msa1386130:CDS 70.0%
GTATCCTCCGCCGCCGCCAG+CGG + tig0020787:46009-46028 Msa1386130:CDS 75.0%
GTATCCTCCGCCGCCGCCAG+CGG + tig0020787:46009-46028 Msa1386130:CDS 75.0%
! CAAACCGCTGGCGGCGGCGG+AGG - tig0020787:46016-46035 None:intergenic 80.0%
! CAAACCGCTGGCGGCGGCGG+AGG - tig0020787:46016-46035 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0020787 gene 45203 46952 45203 ID=Msa1386130;Name=Msa1386130
tig0020787 mRNA 45203 46952 45203 ID=Msa1386130-mRNA-1;Parent=Msa1386130;Name=Msa1386130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.75|0.4|1|0.5|0.2|5|0|426
tig0020787 exon 45203 45425 45203 ID=Msa1386130-mRNA-1:exon:9994;Parent=Msa1386130-mRNA-1
tig0020787 exon 45441 46300 45441 ID=Msa1386130-mRNA-1:exon:9995;Parent=Msa1386130-mRNA-1
tig0020787 exon 46548 46619 46548 ID=Msa1386130-mRNA-1:exon:9996;Parent=Msa1386130-mRNA-1
tig0020787 exon 46717 46746 46717 ID=Msa1386130-mRNA-1:exon:9997;Parent=Msa1386130-mRNA-1
tig0020787 exon 46857 46952 46857 ID=Msa1386130-mRNA-1:exon:9998;Parent=Msa1386130-mRNA-1
tig0020787 CDS 45203 45425 45203 ID=Msa1386130-mRNA-1:cds;Parent=Msa1386130-mRNA-1
tig0020787 CDS 45441 46300 45441 ID=Msa1386130-mRNA-1:cds;Parent=Msa1386130-mRNA-1
tig0020787 CDS 46548 46619 46548 ID=Msa1386130-mRNA-1:cds;Parent=Msa1386130-mRNA-1
tig0020787 CDS 46717 46746 46717 ID=Msa1386130-mRNA-1:cds;Parent=Msa1386130-mRNA-1
tig0020787 CDS 46857 46952 46857 ID=Msa1386130-mRNA-1:cds;Parent=Msa1386130-mRNA-1
Gene Sequence

>Msa1386130

ATGGTGGTAAGAGAAGGTGAGATGAATTGGCAACAAGGGGAGGTAGAATCATTGCAGAGGGAAGGAGAAGAAGCGATCAGGAATGACGTCAACAATGTCATTTCTTCATCGCTTGGAAGACAATCGTCATCCATATATTCACTCACCCTCGACGAGTTCCAACACAGCCTCTGTGACAGCGGCAAGAATTTCGGGTCCATGAACATGGATGAGTTTCTAAGTAAAGAAAACCAACAACAAGCTGCATCCAACAATAATAACAGCAACAACAATAACTTGTCTGCAGCTCAGAAAGGGATTAGCAAACAGGCAAGTCTTCCTCGCCAAAATTCGTTATCGATTCCTGCACCTCTCTGCAGGAAAACTGTTGAACAAGTTTGGTCTGAGATACACAAAGAACAACAGAACCATCACAACATCAACAATGTTGCTCAGAATACCGAGTCTACCCCTCGACAACCGACTTTTGGCGAGATGACATTGGAGGATTTCTTGGTTAAAGCAGGGGTAGTTAGGGAACAACAGTCTGGTATGCCGGTTGCCATAGCACCACCACCTGCCGCAGCAGCAGTGTCATCTCACCGGCCCCAGCAGCATTACGCCGCAGTGTATCCTAATAACAACTCTACAATGGCTCAGGCTGCTTCATTTGCTATTGGCGGCGGCGGCGGGAATCTGAATGTGGTTGCGCCGCCATACCAAACGGTGGCACAGGGAGGTGGAGGAGTTGGAGAGCCTTCGGGTTCGGGGTATGTTGGGAATGGTAAGACTAGGGATAGTATAGGTACGGGGTATCCTCCGCCGCCGCCAGCGGTTTGTTATGGAGGGAGAGTGGTGAATGGAGGGGCGGGCGGTTATGGTGTGGCAGTGGCACAAACTATGGGGATGGGCGGACCTGTTAGTCCGGTTTCTTCGGATGGGATTGGAAACGAAAACTCGGGTGGTCAATTTGGGATTGATATGAATGGTTTAAGAGGAAGAAAGAGGATGGTTGATGGTCCTGTTGAAAGGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCAGCAAGATCTAGAGCCAGAAAACAGGCATACACAGTTGAATTAGAAGCAGAACTGAATCAATTAAGAGAAGAGAATTCTCAACTGAAACAGGCACTGGCTGAACTAGAGAGGAGAAGAAGACAACAGTGTTTAGAGGAAACAAACGTGAGAGTTCAAACCAAAGCTCAGAAAGCAAAAGAGAAACTGAGAGGCTTAAGAAGGAATACAAGTTGTCATATGTGA
Protein sequence

>Msa1386130

MVVREGEMNWQQGEVESLQREGEEAIRNDVNNVISSSLGRQSSSIYSLTLDEFQHSLCDSGKNFGSMNMDEFLSKENQQQAASNNNNSNNNNLSAAQKGISKQASLPRQNSLSIPAPLCRKTVEQVWSEIHKEQQNHHNINNVAQNTESTPRQPTFGEMTLEDFLVKAGVVREQQSGMPVAIAPPPAAAAVSSHRPQQHYAAVYPNNNSTMAQAASFAIGGGGGNLNVVAPPYQTVAQGGGGVGEPSGSGYVGNGKTRDSIGTGYPPPPPAVCYGGRVVNGGAGGYGVAVAQTMGMGGPVSPVSSDGIGNENSGGQFGIDMNGLRGRKRMVDGPVERVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENSQLKQALAELERRRRQQCLEETNVRVQTKAQKAKEKLRGLRRNTSCHM*