AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427680 MtrunA17_Chr7g0266211 97.917 432 7 2 1 431 1 431 0.0 860
Msa1427680 MtrunA17_Chr8g0355121 35.112 356 134 11 37 388 23 285 4.72e-46 161
Msa1427680 MtrunA17_Chr4g0044771 34.709 412 151 17 43 406 22 363 6.04e-46 162
Msa1427680 MtrunA17_Chr3g0080341 35.854 357 152 11 38 394 20 299 1.38e-44 157
Msa1427680 MtrunA17_Chr2g0321381 50.350 143 57 6 43 185 26 154 2.07e-36 135
Msa1427680 MtrunA17_Chr2g0321381 46.154 143 48 4 266 393 161 289 7.33e-19 86.7
Msa1427680 MtrunA17_Chr2g0321411 48.551 138 59 5 44 181 13 138 4.77e-32 123
Msa1427680 MtrunA17_Chr2g0321411 52.381 126 47 3 298 419 165 281 3.34e-30 118
Msa1427680 MtrunA17_Chr3g0133971 48.148 135 48 4 44 178 32 144 3.47e-28 115
Msa1427680 MtrunA17_Chr3g0133971 46.043 139 67 3 280 412 283 419 3.55e-22 98.2
Msa1427680 MtrunA17_Chr6g0460301 38.255 149 69 3 41 182 18 150 2.60e-21 94.0
Msa1427680 MtrunA17_Chr7g0254991 35.766 137 66 4 44 178 21 137 1.26e-17 83.6
Msa1427680 MtrunA17_Chr7g0254991 67.164 67 20 2 330 395 233 298 1.49e-17 83.2
Msa1427680 MtrunA17_Chr4g0051101 37.097 124 65 3 286 402 71 188 1.80e-15 74.7
Msa1427680 MtrunA17_Chr1g0201751 53.030 66 31 0 340 405 157 222 8.21e-13 68.2
Msa1427680 MtrunA17_Chr5g0440841 36.090 133 67 2 44 176 27 141 1.80e-12 67.4
Msa1427680 MtrunA17_Chr5g0440841 58.621 58 24 0 331 388 184 241 3.83e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427680 AT2G36270.1 47.083 480 167 12 1 431 1 442 1.28e-114 343
Msa1427680 AT2G36270.2 47.083 480 167 12 1 431 1 442 1.28e-114 343
Msa1427680 AT2G36270.3 47.556 450 149 12 1 401 1 412 7.99e-107 323
Msa1427680 AT1G45249.7 36.855 407 181 14 44 407 41 414 4.37e-50 176
Msa1427680 AT1G45249.6 36.855 407 181 14 44 407 41 414 4.37e-50 176
Msa1427680 AT1G45249.1 36.364 407 183 14 44 407 26 399 4.30e-48 170
Msa1427680 AT1G45249.3 35.613 424 185 16 38 407 21 410 7.00e-45 161
Msa1427680 AT1G49720.1 31.633 392 224 9 29 403 6 370 5.74e-35 134
Msa1427680 AT1G49720.3 31.633 392 224 9 29 403 6 370 5.74e-35 134
Msa1427680 AT3G44460.1 51.408 142 53 4 38 178 35 161 1.52e-31 123
Msa1427680 AT3G44460.1 53.211 109 48 1 321 429 224 329 6.67e-21 93.6
Msa1427680 AT3G56850.1 47.368 152 60 5 27 178 5 136 5.86e-28 112
Msa1427680 AT3G56850.1 67.797 59 18 1 331 388 211 269 1.28e-15 77.4
Msa1427680 AT1G49720.2 41.212 165 71 5 29 181 6 156 4.16e-27 112
Msa1427680 AT1G49720.2 55.556 72 32 0 331 402 298 369 2.17e-16 81.3
Msa1427680 AT5G42910.1 27.208 419 227 13 26 421 7 370 4.96e-27 111
Msa1427680 AT3G19290.4 44.138 145 72 4 38 178 34 173 3.99e-25 107
Msa1427680 AT3G19290.4 45.614 114 49 3 289 402 309 409 9.44e-18 85.1
Msa1427680 AT3G19290.1 44.138 145 72 4 38 178 34 173 6.50e-25 106
Msa1427680 AT3G19290.1 46.667 120 50 4 289 408 309 414 4.85e-18 86.3
Msa1427680 AT3G19290.5 44.138 145 72 4 38 178 34 173 6.50e-25 106
Msa1427680 AT3G19290.5 46.667 120 50 4 289 408 309 414 4.85e-18 86.3
Msa1427680 AT3G19290.3 44.138 145 72 4 38 178 34 173 6.62e-25 106
Msa1427680 AT3G19290.3 46.667 120 51 3 289 408 309 415 3.40e-19 89.7
Msa1427680 AT3G19290.2 44.138 145 72 4 38 178 34 173 8.67e-25 105
Msa1427680 AT4G34000.3 40.606 165 72 5 38 179 27 188 1.42e-24 105
Msa1427680 AT4G34000.3 53.659 82 31 1 329 403 357 438 3.39e-17 84.0
Msa1427680 AT4G34000.1 40.476 168 74 5 35 179 24 188 1.44e-24 105
Msa1427680 AT4G34000.1 57.333 75 32 0 329 403 357 431 4.26e-19 89.7
Msa1427680 AT4G34000.4 40.476 168 74 5 35 179 24 188 1.44e-24 105
Msa1427680 AT4G34000.4 57.333 75 32 0 329 403 357 431 4.26e-19 89.7
Msa1427680 AT4G34000.2 40.476 168 74 5 35 179 24 188 1.44e-24 105
Msa1427680 AT4G34000.2 57.333 75 32 0 329 403 357 431 4.26e-19 89.7
Msa1427680 AT2G41070.5 34.872 195 77 7 25 210 3 156 7.18e-21 91.7
Msa1427680 AT2G41070.5 67.241 58 19 0 331 388 177 234 6.80e-16 77.4
Msa1427680 AT2G41070.3 34.872 195 77 7 25 210 3 156 1.57e-20 91.3
Msa1427680 AT2G41070.3 64.615 65 22 1 331 395 177 240 2.81e-16 79.0
Msa1427680 AT2G41070.1 34.872 195 77 7 25 210 3 156 1.57e-20 91.3
Msa1427680 AT2G41070.1 64.615 65 22 1 331 395 177 240 2.81e-16 79.0
Msa1427680 AT2G41070.2 34.872 195 77 7 25 210 3 156 1.57e-20 91.3
Msa1427680 AT2G41070.2 64.615 65 22 1 331 395 177 240 2.81e-16 79.0
Msa1427680 AT2G41070.4 34.872 195 77 7 25 210 12 165 1.96e-20 90.9
Msa1427680 AT2G41070.4 64.615 65 22 1 331 395 186 249 2.67e-16 79.0
Msa1427680 AT5G44080.1 44.762 105 55 2 323 424 207 311 5.12e-15 75.9
Msa1427680 AT1G45249.10 52.222 90 31 4 290 371 278 363 1.42e-14 75.5
Msa1427680 AT1G45249.5 52.222 90 31 4 290 371 278 363 1.42e-14 75.5
Msa1427680 AT2G17770.2 41.026 117 51 3 271 387 69 167 4.09e-14 71.2
Msa1427680 AT1G45249.4 47.573 103 36 5 290 378 278 376 1.33e-13 72.8
Msa1427680 AT1G45249.8 47.573 103 36 5 290 378 278 376 1.33e-13 72.8
Msa1427680 AT1G45249.2 47.573 103 36 5 290 378 278 376 1.33e-13 72.8
Msa1427680 AT1G45249.9 47.573 103 36 5 290 378 278 376 1.33e-13 72.8
Msa1427680 AT1G03970.1 50.000 76 36 1 328 403 173 246 2.45e-12 67.4
Msa1427680 AT4G35900.1 33.951 162 89 6 240 394 114 264 5.92e-12 66.6

Find 152 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACTCGGGTGGTCAATT+TGG 0.166727 tig0026197:+66710 Msa1427680:CDS
ATGAGTTTCTAAGTAGTATT+TGG 0.209852 tig0026197:+65973 Msa1427680:CDS
CAGGAATCGATAACGAATTT+TGG 0.216092 tig0026197:-66103 None:intergenic
GTTGGAGAGCCTTCGGGTTC+GGG 0.231478 tig0026197:+66506 Msa1427680:CDS
CAGGCTGCTTCATTTGCTAT+TGG 0.248337 tig0026197:+66416 Msa1427680:CDS
GTGACAGCGGCAAGAATTTC+GGG 0.248709 tig0026197:+65937 Msa1427680:CDS
AGTTGGAGAGCCTTCGGGTT+CGG 0.262820 tig0026197:+66505 Msa1427680:CDS
GATGACATTGGAGGATTTCT+TGG 0.268533 tig0026197:+66253 Msa1427680:CDS
TGTGACAGCGGCAAGAATTT+CGG 0.276728 tig0026197:+65936 Msa1427680:CDS
TGGTTAAAGCAGGGGTAGTT+AGG 0.281516 tig0026197:+66273 Msa1427680:CDS
AATGGAGGGGCGGGCGGTTA+TGG 0.286276 tig0026197:+66617 Msa1427680:CDS
GCCATTGTAGAGTTGTTATT+AGG 0.296465 tig0026197:-66392 None:intergenic
CCGCCGCCAGCGGTTTGTTA+TGG 0.308148 tig0026197:+66581 Msa1427680:CDS
GTTGTTGCTGTTATTATTGT+TGG 0.310662 tig0026197:-66027 None:intergenic
TGTGGCAGTGGCACAAACTA+TGG 0.315000 tig0026197:+66640 Msa1427680:CDS
ACCCCTCGACAACCGACTTT+TGG 0.322363 tig0026197:+66227 Msa1427680:CDS
ACCTGTTAGTCCGGTTTCTT+CGG 0.327709 tig0026197:+66673 Msa1427680:CDS
AAAACTCGGGTGGTCAATTT+GGG 0.341515 tig0026197:+66711 Msa1427680:CDS
ACACTGCGGCGTAATGCTGC+TGG 0.344613 tig0026197:-66367 None:intergenic
TTACCTCATGCAGTGTTTAG+AGG 0.347444 tig0026197:+67406 Msa1427680:intron
GGAAAACTGTTGAACAAGTT+TGG 0.348644 tig0026197:+66138 Msa1427680:CDS
TTGCTATTGGCGGCGGCGGC+GGG 0.353891 tig0026197:+66429 Msa1427680:CDS
CTCTCCACCACCCTTTCAAC+AGG 0.360473 tig0026197:-66779 None:intergenic
CACTGCGGCGTAATGCTGCT+GGG 0.364765 tig0026197:-66366 None:intergenic
TGGAGGAGTTGGAGAGCCTT+CGG 0.365531 tig0026197:+66499 Msa1427680:CDS
TCCGAAGAAACCGGACTAAC+AGG 0.372237 tig0026197:-66674 None:intergenic
GTCGAGGGTGAGTGAATATA+TGG 0.374227 tig0026197:-65895 None:intergenic
TTTGCTATTGGCGGCGGCGG+CGG 0.374673 tig0026197:+66428 Msa1427680:CDS
CTTCGGGTTCGGGGTATGTT+GGG 0.383128 tig0026197:+66516 Msa1427680:CDS
CAAACCGCTGGCGGCGGCGG+AGG 0.394088 tig0026197:-66575 None:intergenic
ACTGCTGCTGCGGCAGGTGG+TGG 0.397437 tig0026197:-66329 None:intergenic
TAGAAACTCATCCATGTTCA+TGG 0.401819 tig0026197:-65961 None:intergenic
AGAGAATTCTCAACTGAAAC+AGG 0.410221 tig0026197:+67154 Msa1427680:CDS
TAAGAGAAGGTGAGATGAAT+TGG 0.412357 tig0026197:+65772 Msa1427680:CDS
CCGGTTTCTTCGGATGGGAT+TGG 0.415620 tig0026197:+66683 Msa1427680:CDS
GGAGGAGTTGGAGAGCCTTC+GGG 0.416356 tig0026197:+66500 Msa1427680:CDS
CCTTCGGGTTCGGGGTATGT+TGG 0.416821 tig0026197:+66515 Msa1427680:CDS
CACCTCCCTGTGCCACCGTT+TGG 0.419295 tig0026197:-66478 None:intergenic
AAGATCTAGAGCCAGAAAAC+AGG 0.420885 tig0026197:+66841 Msa1427680:CDS
TGTTGGATGCAGCTTGTTGT+TGG 0.421539 tig0026197:-66010 None:intergenic
CGGCGTAATGCTGCTGGGGC+CGG 0.426351 tig0026197:-66361 None:intergenic
GCACAGGGAGGTGGAGGAGT+TGG 0.427569 tig0026197:+66488 Msa1427680:CDS
GTTAGTCCGGTTTCTTCGGA+TGG 0.429323 tig0026197:+66677 Msa1427680:CDS
TCATTTGCTATTGGCGGCGG+CGG 0.434400 tig0026197:+66425 Msa1427680:CDS
CCCTGTGCCACCGTTTGGTA+TGG 0.438711 tig0026197:-66473 None:intergenic
GGTGGTGGTGCTATGGCAAC+CGG 0.443970 tig0026197:-66314 None:intergenic
GAGGGAGAGTGGTGAATGGA+GGG 0.444211 tig0026197:+66603 Msa1427680:CDS
GATGGGCGGACCTGTTAGTC+CGG 0.445248 tig0026197:+66664 Msa1427680:CDS
TCAGAAAGGGATTAGCAAAC+AGG 0.447868 tig0026197:+66067 Msa1427680:CDS
ATTGATATGAATGGTTTAAG+AGG 0.448244 tig0026197:+66734 Msa1427680:CDS
GGAAGAAAGAGGATGGTTGA+TGG 0.453215 tig0026197:+66755 Msa1427680:CDS
GAGGATTTCTTGGTTAAAGC+AGG 0.456229 tig0026197:+66263 Msa1427680:CDS
GATGACACTGCTGCTGCGGC+AGG 0.456822 tig0026197:-66335 None:intergenic
TGGTGGAGAGAAGGCAGAGG+AGG 0.457363 tig0026197:+66792 Msa1427680:CDS
GACTAGGGATAGTATAGGTA+CGG 0.462211 tig0026197:+66547 Msa1427680:CDS
AATGTCATTTCTTCATCGCT+TGG 0.465109 tig0026197:+65858 Msa1427680:CDS
GCCATACCAAACGGTGGCAC+AGG 0.467096 tig0026197:+66472 Msa1427680:CDS
ACGGTGGCACAGGGAGGTGG+AGG 0.470179 tig0026197:+66482 Msa1427680:CDS
GGGCGGTTATGGTGTGGCAG+TGG 0.471720 tig0026197:+66628 Msa1427680:CDS
GGGAAGGAGAAGAAGCGATC+AGG 0.473369 tig0026197:+65823 Msa1427680:CDS
AGGGGCGGGCGGTTATGGTG+TGG 0.475144 tig0026197:+66622 Msa1427680:CDS
TAACAAACCGCTGGCGGCGG+CGG 0.477710 tig0026197:-66578 None:intergenic
CCGCCAGCGGTTTGTTATGG+AGG 0.477954 tig0026197:+66584 Msa1427680:CDS
CAAACGGTGGCACAGGGAGG+TGG 0.478151 tig0026197:+66479 Msa1427680:CDS
CGATTCCTGCACCTCTCTGC+AGG 0.479043 tig0026197:+66117 Msa1427680:CDS
GGTTGATGGTCCTGTTGAAA+GGG 0.481262 tig0026197:+66769 Msa1427680:CDS
CCAATCCCATCCGAAGAAAC+CGG 0.481309 tig0026197:-66683 None:intergenic
GGTTAAAGCAGGGGTAGTTA+GGG 0.481908 tig0026197:+66274 Msa1427680:CDS
AGAGAGGAGAAGAAGACAAC+AGG 0.484243 tig0026197:+67287 Msa1427680:CDS
TTAGTCCGGTTTCTTCGGAT+GGG 0.486374 tig0026197:+66678 Msa1427680:CDS
GACACTGCTGCTGCGGCAGG+TGG 0.491945 tig0026197:-66332 None:intergenic
AGGGAGAGTGGTGAATGGAG+GGG 0.491999 tig0026197:+66604 Msa1427680:CDS
GCTGCTTCATTTGCTATTGG+CGG 0.495000 tig0026197:+66419 Msa1427680:CDS
GAGAGTGGTGAATGGAGGGG+CGG 0.499932 tig0026197:+66607 Msa1427680:CDS
AGTGGCACAAACTATGGGGA+TGG 0.502987 tig0026197:+66646 Msa1427680:CDS
CAATTTGGGATTGATATGAA+TGG 0.505237 tig0026197:+66725 Msa1427680:CDS
AGAGTGGTGAATGGAGGGGC+GGG 0.505464 tig0026197:+66608 Msa1427680:CDS
TGCGGCAGGTGGTGGTGCTA+TGG 0.506524 tig0026197:-66321 None:intergenic
GGGTGGTGGAGAGAAGGCAG+AGG 0.506953 tig0026197:+66789 Msa1427680:CDS
GGAGGGAGAGTGGTGAATGG+AGG 0.509570 tig0026197:+66602 Msa1427680:CDS
CCATAACAAACCGCTGGCGG+CGG 0.510979 tig0026197:-66581 None:intergenic
ACTTGTCTGCAGCTCAGAAA+GGG 0.519532 tig0026197:+66054 Msa1427680:CDS
CAACATTGTTGATGTTGTGA+TGG 0.520957 tig0026197:-66187 None:intergenic
GTGGCAGTGGCACAAACTAT+GGG 0.520968 tig0026197:+66641 Msa1427680:CDS
AACTTGTCTGCAGCTCAGAA+AGG 0.521964 tig0026197:+66053 Msa1427680:CDS
CGCCAAAAGTCGGTTGTCGA+GGG 0.522444 tig0026197:-66229 None:intergenic
AAGAATATGGTGGTAAGAGA+AGG 0.522714 tig0026197:+65759 None:intergenic
GCTTCATTTGCTATTGGCGG+CGG 0.528163 tig0026197:+66422 Msa1427680:CDS
TATGGAGGGAGAGTGGTGAA+TGG 0.528806 tig0026197:+66599 Msa1427680:CDS
CGCCAGCGGTTTGTTATGGA+GGG 0.528969 tig0026197:+66585 Msa1427680:CDS
ACTAGGGATAGTATAGGTAC+GGG 0.531284 tig0026197:+66548 Msa1427680:CDS
AGAAACTGAGAGGCTTAAGA+AGG 0.532363 tig0026197:+67471 Msa1427680:CDS
TAACAACTCTACAATGGCTC+AGG 0.534100 tig0026197:+66397 Msa1427680:CDS
TGTTGGGAATGGTAAGACTA+GGG 0.535160 tig0026197:+66532 Msa1427680:CDS
GAATTTCGGGTCCATGAACA+TGG 0.544850 tig0026197:+65950 Msa1427680:CDS
TTTAAGAGGAAGAAAGAGGA+TGG 0.548041 tig0026197:+66748 Msa1427680:CDS
CGCTGTCACAGAGGCTGTGT+TGG 0.549331 tig0026197:-65923 None:intergenic
TCGCCAAAAGTCGGTTGTCG+AGG 0.549884 tig0026197:-66230 None:intergenic
TTGAAAGGGTGGTGGAGAGA+AGG 0.555209 tig0026197:+66783 Msa1427680:CDS
GTGGCACAAACTATGGGGAT+GGG 0.557884 tig0026197:+66647 Msa1427680:CDS
GGAACAACAGTCTGGTATGC+CGG 0.558038 tig0026197:+66295 Msa1427680:CDS
CTCCCTCCATAACAAACCGC+TGG 0.558325 tig0026197:-66587 None:intergenic
GTAGTTAGGGAACAACAGTC+TGG 0.560019 tig0026197:+66287 Msa1427680:CDS
TTCTCAACTGAAACAGGCAC+TGG 0.564684 tig0026197:+67160 Msa1427680:CDS
TGGTTGATGGTCCTGTTGAA+AGG 0.565970 tig0026197:+66768 Msa1427680:CDS
GGCTGTGTTGGAACTCGTCG+AGG 0.566650 tig0026197:-65911 None:intergenic
GGTTCGGGGTATGTTGGGAA+TGG 0.567692 tig0026197:+66521 Msa1427680:CDS
CAGCAGCAGTGTCATCTCAC+CGG 0.569711 tig0026197:+66342 Msa1427680:CDS
ATGGTTTAAGAGGAAGAAAG+AGG 0.570839 tig0026197:+66744 Msa1427680:CDS
TTGGAGAGCCTTCGGGTTCG+GGG 0.572733 tig0026197:+66507 Msa1427680:CDS
TGTGCCACCGTTTGGTATGG+CGG 0.573089 tig0026197:-66470 None:intergenic
AGGATTTCTTGGTTAAAGCA+GGG 0.574066 tig0026197:+66264 Msa1427680:CDS
TGATGGTCCTGTTGAAAGGG+TGG 0.574869 tig0026197:+66772 Msa1427680:CDS
TTCTTCAGGCTGAACTAGAG+AGG 0.575021 tig0026197:+67271 Msa1427680:intron
GGTAAGACTAGGGATAGTAT+AGG 0.577774 tig0026197:+66542 Msa1427680:CDS
ACTGCGGCGTAATGCTGCTG+GGG 0.580500 tig0026197:-66365 None:intergenic
GTGAGATGAATTGGCAACAA+GGG 0.583790 tig0026197:+65781 Msa1427680:CDS
CCATACCAAACGGTGGCACA+GGG 0.583912 tig0026197:+66473 Msa1427680:CDS
TGGGATTGGAAACGAAAACT+CGG 0.584083 tig0026197:+66697 Msa1427680:CDS
GTAGAATCATTGCAGAGGGA+AGG 0.584321 tig0026197:+65807 Msa1427680:CDS
ATGTTGGGAATGGTAAGACT+AGG 0.593588 tig0026197:+66531 Msa1427680:CDS
GGTTGCGCCGCCATACCAAA+CGG 0.595175 tig0026197:+66463 Msa1427680:CDS
GTATCCTCCGCCGCCGCCAG+CGG 0.598153 tig0026197:+66571 Msa1427680:CDS
GTGGTGAATGGAGGGGCGGG+CGG 0.598279 tig0026197:+66611 Msa1427680:CDS
CAACACAGCCTCTGTGACAG+CGG 0.601697 tig0026197:+65924 Msa1427680:CDS
CGGCGGCGGGAATCTGAATG+TGG 0.602274 tig0026197:+66442 Msa1427680:CDS
AATGTCATCTCGCCAAAAGT+CGG 0.605885 tig0026197:-66239 None:intergenic
GTGAGATGACACTGCTGCTG+CGG 0.608010 tig0026197:-66339 None:intergenic
TGGTCCTGTTGAAAGGGTGG+TGG 0.612440 tig0026197:+66775 Msa1427680:CDS
GGAGGTAGAATCATTGCAGA+GGG 0.612581 tig0026197:+65803 Msa1427680:CDS
GGTGAGATGAATTGGCAACA+AGG 0.616844 tig0026197:+65780 Msa1427680:CDS
CGGTTGTCGAGGGGTAGACT+CGG 0.617759 tig0026197:-66219 None:intergenic
TCCTAATAACAACTCTACAA+TGG 0.627967 tig0026197:+66391 Msa1427680:CDS
GCACAAACTATGGGGATGGG+CGG 0.628434 tig0026197:+66650 Msa1427680:CDS
GGTTTGTTATGGAGGGAGAG+TGG 0.634679 tig0026197:+66592 Msa1427680:CDS
GATGAATTGGCAACAAGGGG+AGG 0.635893 tig0026197:+65785 Msa1427680:CDS
TGAGATGAATTGGCAACAAG+GGG 0.639163 tig0026197:+65782 Msa1427680:CDS
CCTCCATAACAAACCGCTGG+CGG 0.640926 tig0026197:-66584 None:intergenic
GGATTTCTTGGTTAAAGCAG+GGG 0.646725 tig0026197:+66265 Msa1427680:CDS
CCAACATACCCCGAACCCGA+AGG 0.649040 tig0026197:-66515 None:intergenic
GCCAAAAGTCGGTTGTCGAG+GGG 0.657167 tig0026197:-66228 None:intergenic
GCTGTGTTGGAACTCGTCGA+GGG 0.657810 tig0026197:-65910 None:intergenic
GGGATTGGAAACGAAAACTC+GGG 0.662976 tig0026197:+66698 Msa1427680:CDS
GGGAGGTAGAATCATTGCAG+AGG 0.672753 tig0026197:+65802 Msa1427680:CDS
TACCAAACGGTGGCACAGGG+AGG 0.683725 tig0026197:+66476 Msa1427680:CDS
TGCGCCGCCATACCAAACGG+TGG 0.683832 tig0026197:+66466 Msa1427680:CDS
TGGCAGTGGCACAAACTATG+GGG 0.694881 tig0026197:+66642 Msa1427680:CDS
ATTGGAAACGAAAACTCGGG+TGG 0.712637 tig0026197:+66701 Msa1427680:CDS
AAAGCAAAAGAGAAACTGAG+AGG 0.716117 tig0026197:+67461 Msa1427680:CDS
AATTCTTGCCGCTGTCACAG+AGG 0.718674 tig0026197:-65932 None:intergenic
CTAGGGATAGTATAGGTACG+GGG 0.720083 tig0026197:+66549 Msa1427680:CDS
GTTGTTATTAGGATACACTG+CGG 0.806201 tig0026197:-66381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAAAGTATAAAATAAT+TGG - tig0026197:66882-66901 None:intergenic 10.0%
!! AGATTAAAGTATAAAATAAT+TGG - tig0026197:66882-66901 None:intergenic 10.0%
!! AAATAATTGGTTAAAATTTC+AGG - tig0026197:66869-66888 None:intergenic 15.0%
!! TATATATACATAAGAATTTG+TGG - tig0026197:66917-66936 None:intergenic 15.0%
!! TTTATATACTATTGAAGAAT+TGG + tig0026197:66958-66977 Msa1427680:intron 15.0%
!!! CAAACATATTATTTCTAATT+TGG - tig0026197:67016-67035 None:intergenic 15.0%
!! AAATAATTGGTTAAAATTTC+AGG - tig0026197:66869-66888 None:intergenic 15.0%
!! TATATATACATAAGAATTTG+TGG - tig0026197:66917-66936 None:intergenic 15.0%
!! TTTATATACTATTGAAGAAT+TGG + tig0026197:66958-66977 Msa1427680:intron 15.0%
!!! CAAACATATTATTTCTAATT+TGG - tig0026197:67016-67035 None:intergenic 15.0%
!!! TAATGTCTTTAAATTTTCTG+AGG - tig0026197:67342-67361 None:intergenic 20.0%
!! TAGATTTGATTCAAAACAAA+AGG - tig0026197:67370-67389 None:intergenic 20.0%
!!! TAATGTCTTTAAATTTTCTG+AGG - tig0026197:67342-67361 None:intergenic 20.0%
!! TAGATTTGATTCAAAACAAA+AGG - tig0026197:67370-67389 None:intergenic 20.0%
! ATGAGTTTCTAAGTAGTATT+TGG + tig0026197:65973-65992 Msa1427680:CDS 25.0%
! ATTGATATGAATGGTTTAAG+AGG + tig0026197:66734-66753 Msa1427680:CDS 25.0%
! GAAAGAAAATTGTGTTACAA+AGG - tig0026197:67078-67097 None:intergenic 25.0%
! CTGTAATAGTTAATGTTGTT+TGG - tig0026197:67191-67210 None:intergenic 25.0%
! ATTATAGTTTAGACCATCAT+TGG - tig0026197:67316-67335 None:intergenic 25.0%
! ATGAGTTTCTAAGTAGTATT+TGG + tig0026197:65973-65992 Msa1427680:CDS 25.0%
! ATTGATATGAATGGTTTAAG+AGG + tig0026197:66734-66753 Msa1427680:CDS 25.0%
! GAAAGAAAATTGTGTTACAA+AGG - tig0026197:67078-67097 None:intergenic 25.0%
! CTGTAATAGTTAATGTTGTT+TGG - tig0026197:67191-67210 None:intergenic 25.0%
! ATTATAGTTTAGACCATCAT+TGG - tig0026197:67316-67335 None:intergenic 25.0%
! GTTGTTGCTGTTATTATTGT+TGG - tig0026197:66030-66049 None:intergenic 30.0%
TCCTAATAACAACTCTACAA+TGG + tig0026197:66391-66410 Msa1427680:CDS 30.0%
! CAATTTGGGATTGATATGAA+TGG + tig0026197:66725-66744 Msa1427680:CDS 30.0%
! ATTTTCTTTCTTGCTTATGC+AGG + tig0026197:67088-67107 Msa1427680:intron 30.0%
! TCATGCTTCTTTTATTCTTC+AGG + tig0026197:67257-67276 Msa1427680:intron 30.0%
! GTTGTTGCTGTTATTATTGT+TGG - tig0026197:66030-66049 None:intergenic 30.0%
TCCTAATAACAACTCTACAA+TGG + tig0026197:66391-66410 Msa1427680:CDS 30.0%
! CAATTTGGGATTGATATGAA+TGG + tig0026197:66725-66744 Msa1427680:CDS 30.0%
! ATTTTCTTTCTTGCTTATGC+AGG + tig0026197:67088-67107 Msa1427680:intron 30.0%
! TCATGCTTCTTTTATTCTTC+AGG + tig0026197:67257-67276 Msa1427680:intron 30.0%
TAAGAGAAGGTGAGATGAAT+TGG + tig0026197:65772-65791 Msa1427680:CDS 35.0%
! AATGTCATTTCTTCATCGCT+TGG + tig0026197:65858-65877 Msa1427680:CDS 35.0%
TAGAAACTCATCCATGTTCA+TGG - tig0026197:65964-65983 None:intergenic 35.0%
! CAGGAATCGATAACGAATTT+TGG - tig0026197:66106-66125 None:intergenic 35.0%
GGAAAACTGTTGAACAAGTT+TGG + tig0026197:66138-66157 Msa1427680:CDS 35.0%
CAACATTGTTGATGTTGTGA+TGG - tig0026197:66190-66209 None:intergenic 35.0%
AGGATTTCTTGGTTAAAGCA+GGG + tig0026197:66264-66283 Msa1427680:CDS 35.0%
! GTTGTTATTAGGATACACTG+CGG - tig0026197:66384-66403 None:intergenic 35.0%
! GCCATTGTAGAGTTGTTATT+AGG - tig0026197:66395-66414 None:intergenic 35.0%
ATGGTTTAAGAGGAAGAAAG+AGG + tig0026197:66744-66763 Msa1427680:CDS 35.0%
TTTAAGAGGAAGAAAGAGGA+TGG + tig0026197:66748-66767 Msa1427680:CDS 35.0%
! AATTTCAGGAACCTGTTTTC+TGG - tig0026197:66855-66874 None:intergenic 35.0%
AGAGAATTCTCAACTGAAAC+AGG + tig0026197:67154-67173 Msa1427680:CDS 35.0%
GTGATTCAACTATACTGACA+AGG + tig0026197:67233-67252 Msa1427680:intron 35.0%
AAAGCAAAAGAGAAACTGAG+AGG + tig0026197:67461-67480 Msa1427680:CDS 35.0%
TAAGAGAAGGTGAGATGAAT+TGG + tig0026197:65772-65791 Msa1427680:CDS 35.0%
! AATGTCATTTCTTCATCGCT+TGG + tig0026197:65858-65877 Msa1427680:CDS 35.0%
TAGAAACTCATCCATGTTCA+TGG - tig0026197:65964-65983 None:intergenic 35.0%
! CAGGAATCGATAACGAATTT+TGG - tig0026197:66106-66125 None:intergenic 35.0%
GGAAAACTGTTGAACAAGTT+TGG + tig0026197:66138-66157 Msa1427680:CDS 35.0%
CAACATTGTTGATGTTGTGA+TGG - tig0026197:66190-66209 None:intergenic 35.0%
AGGATTTCTTGGTTAAAGCA+GGG + tig0026197:66264-66283 Msa1427680:CDS 35.0%
! GTTGTTATTAGGATACACTG+CGG - tig0026197:66384-66403 None:intergenic 35.0%
! GCCATTGTAGAGTTGTTATT+AGG - tig0026197:66395-66414 None:intergenic 35.0%
ATGGTTTAAGAGGAAGAAAG+AGG + tig0026197:66744-66763 Msa1427680:CDS 35.0%
TTTAAGAGGAAGAAAGAGGA+TGG + tig0026197:66748-66767 Msa1427680:CDS 35.0%
! AATTTCAGGAACCTGTTTTC+TGG - tig0026197:66855-66874 None:intergenic 35.0%
AGAGAATTCTCAACTGAAAC+AGG + tig0026197:67154-67173 Msa1427680:CDS 35.0%
GTGATTCAACTATACTGACA+AGG + tig0026197:67233-67252 Msa1427680:intron 35.0%
AAAGCAAAAGAGAAACTGAG+AGG + tig0026197:67461-67480 Msa1427680:CDS 35.0%
GTGAGATGAATTGGCAACAA+GGG + tig0026197:65781-65800 Msa1427680:CDS 40.0%
TGAGATGAATTGGCAACAAG+GGG + tig0026197:65782-65801 Msa1427680:CDS 40.0%
! TCAGAAAGGGATTAGCAAAC+AGG + tig0026197:66067-66086 Msa1427680:CDS 40.0%
!! ATCGATAACGAATTTTGGCG+AGG - tig0026197:66101-66120 None:intergenic 40.0%
AATGTCATCTCGCCAAAAGT+CGG - tig0026197:66242-66261 None:intergenic 40.0%
GATGACATTGGAGGATTTCT+TGG + tig0026197:66253-66272 Msa1427680:CDS 40.0%
GAGGATTTCTTGGTTAAAGC+AGG + tig0026197:66263-66282 Msa1427680:CDS 40.0%
GGATTTCTTGGTTAAAGCAG+GGG + tig0026197:66265-66284 Msa1427680:CDS 40.0%
TAACAACTCTACAATGGCTC+AGG + tig0026197:66397-66416 Msa1427680:CDS 40.0%
ATGTTGGGAATGGTAAGACT+AGG + tig0026197:66531-66550 Msa1427680:CDS 40.0%
TGTTGGGAATGGTAAGACTA+GGG + tig0026197:66532-66551 Msa1427680:CDS 40.0%
GGTAAGACTAGGGATAGTAT+AGG + tig0026197:66542-66561 Msa1427680:CDS 40.0%
GACTAGGGATAGTATAGGTA+CGG + tig0026197:66547-66566 Msa1427680:CDS 40.0%
ACTAGGGATAGTATAGGTAC+GGG + tig0026197:66548-66567 Msa1427680:CDS 40.0%
TGGGATTGGAAACGAAAACT+CGG + tig0026197:66697-66716 Msa1427680:CDS 40.0%
AAAACTCGGGTGGTCAATTT+GGG + tig0026197:66711-66730 Msa1427680:CDS 40.0%
! AAGATCTAGAGCCAGAAAAC+AGG + tig0026197:66841-66860 Msa1427680:CDS 40.0%
AGACAACAGGTAACCAATGA+TGG + tig0026197:67300-67319 Msa1427680:intron 40.0%
TTACCTCATGCAGTGTTTAG+AGG + tig0026197:67406-67425 Msa1427680:intron 40.0%
TTTCCTCTAAACACTGCATG+AGG - tig0026197:67412-67431 None:intergenic 40.0%
! CTCTTTTGCTTTCTGAGCTT+TGG - tig0026197:67453-67472 None:intergenic 40.0%
AGAAACTGAGAGGCTTAAGA+AGG + tig0026197:67471-67490 Msa1427680:CDS 40.0%
GTGAGATGAATTGGCAACAA+GGG + tig0026197:65781-65800 Msa1427680:CDS 40.0%
TGAGATGAATTGGCAACAAG+GGG + tig0026197:65782-65801 Msa1427680:CDS 40.0%
! TCAGAAAGGGATTAGCAAAC+AGG + tig0026197:66067-66086 Msa1427680:CDS 40.0%
!! ATCGATAACGAATTTTGGCG+AGG - tig0026197:66101-66120 None:intergenic 40.0%
AATGTCATCTCGCCAAAAGT+CGG - tig0026197:66242-66261 None:intergenic 40.0%
GATGACATTGGAGGATTTCT+TGG + tig0026197:66253-66272 Msa1427680:CDS 40.0%
GAGGATTTCTTGGTTAAAGC+AGG + tig0026197:66263-66282 Msa1427680:CDS 40.0%
GGATTTCTTGGTTAAAGCAG+GGG + tig0026197:66265-66284 Msa1427680:CDS 40.0%
TAACAACTCTACAATGGCTC+AGG + tig0026197:66397-66416 Msa1427680:CDS 40.0%
ATGTTGGGAATGGTAAGACT+AGG + tig0026197:66531-66550 Msa1427680:CDS 40.0%
TGTTGGGAATGGTAAGACTA+GGG + tig0026197:66532-66551 Msa1427680:CDS 40.0%
GGTAAGACTAGGGATAGTAT+AGG + tig0026197:66542-66561 Msa1427680:CDS 40.0%
GACTAGGGATAGTATAGGTA+CGG + tig0026197:66547-66566 Msa1427680:CDS 40.0%
ACTAGGGATAGTATAGGTAC+GGG + tig0026197:66548-66567 Msa1427680:CDS 40.0%
TGGGATTGGAAACGAAAACT+CGG + tig0026197:66697-66716 Msa1427680:CDS 40.0%
AAAACTCGGGTGGTCAATTT+GGG + tig0026197:66711-66730 Msa1427680:CDS 40.0%
! AAGATCTAGAGCCAGAAAAC+AGG + tig0026197:66841-66860 Msa1427680:CDS 40.0%
AGACAACAGGTAACCAATGA+TGG + tig0026197:67300-67319 Msa1427680:intron 40.0%
TTACCTCATGCAGTGTTTAG+AGG + tig0026197:67406-67425 Msa1427680:intron 40.0%
TTTCCTCTAAACACTGCATG+AGG - tig0026197:67412-67431 None:intergenic 40.0%
! CTCTTTTGCTTTCTGAGCTT+TGG - tig0026197:67453-67472 None:intergenic 40.0%
AGAAACTGAGAGGCTTAAGA+AGG + tig0026197:67471-67490 Msa1427680:CDS 40.0%
GGTGAGATGAATTGGCAACA+AGG + tig0026197:65780-65799 Msa1427680:CDS 45.0%
GGAGGTAGAATCATTGCAGA+GGG + tig0026197:65803-65822 Msa1427680:CDS 45.0%
GTAGAATCATTGCAGAGGGA+AGG + tig0026197:65807-65826 Msa1427680:CDS 45.0%
GTCGAGGGTGAGTGAATATA+TGG - tig0026197:65898-65917 None:intergenic 45.0%
TGTGACAGCGGCAAGAATTT+CGG + tig0026197:65936-65955 Msa1427680:CDS 45.0%
! GAATTTCGGGTCCATGAACA+TGG + tig0026197:65950-65969 Msa1427680:CDS 45.0%
!! TGTTGGATGCAGCTTGTTGT+TGG - tig0026197:66013-66032 None:intergenic 45.0%
AACTTGTCTGCAGCTCAGAA+AGG + tig0026197:66053-66072 Msa1427680:CDS 45.0%
ACTTGTCTGCAGCTCAGAAA+GGG + tig0026197:66054-66073 Msa1427680:CDS 45.0%
! TCAACAGTTTTCCTGCAGAG+AGG - tig0026197:66131-66150 None:intergenic 45.0%
! GACTTTTGGCGAGATGACAT+TGG + tig0026197:66241-66260 Msa1427680:CDS 45.0%
! TTTTGGCGAGATGACATTGG+AGG + tig0026197:66244-66263 Msa1427680:CDS 45.0%
TGGTTAAAGCAGGGGTAGTT+AGG + tig0026197:66273-66292 Msa1427680:CDS 45.0%
GGTTAAAGCAGGGGTAGTTA+GGG + tig0026197:66274-66293 Msa1427680:CDS 45.0%
GTAGTTAGGGAACAACAGTC+TGG + tig0026197:66287-66306 Msa1427680:CDS 45.0%
!! CAGGCTGCTTCATTTGCTAT+TGG + tig0026197:66416-66435 Msa1427680:CDS 45.0%
!! GCTGCTTCATTTGCTATTGG+CGG + tig0026197:66419-66438 Msa1427680:CDS 45.0%
CTAGGGATAGTATAGGTACG+GGG + tig0026197:66549-66568 Msa1427680:CDS 45.0%
ACCTGTTAGTCCGGTTTCTT+CGG + tig0026197:66673-66692 Msa1427680:CDS 45.0%
TTAGTCCGGTTTCTTCGGAT+GGG + tig0026197:66678-66697 Msa1427680:CDS 45.0%
GGGATTGGAAACGAAAACTC+GGG + tig0026197:66698-66717 Msa1427680:CDS 45.0%
ATTGGAAACGAAAACTCGGG+TGG + tig0026197:66701-66720 Msa1427680:CDS 45.0%
GAAAACTCGGGTGGTCAATT+TGG + tig0026197:66710-66729 Msa1427680:CDS 45.0%
GGAAGAAAGAGGATGGTTGA+TGG + tig0026197:66755-66774 Msa1427680:CDS 45.0%
!! TGGTTGATGGTCCTGTTGAA+AGG + tig0026197:66768-66787 Msa1427680:CDS 45.0%
!! GGTTGATGGTCCTGTTGAAA+GGG + tig0026197:66769-66788 Msa1427680:CDS 45.0%
TTCTCAACTGAAACAGGCAC+TGG + tig0026197:67160-67179 Msa1427680:CDS 45.0%
TTCTTCAGGCTGAACTAGAG+AGG + tig0026197:67271-67290 Msa1427680:intron 45.0%
AGAGAGGAGAAGAAGACAAC+AGG + tig0026197:67287-67306 Msa1427680:CDS 45.0%
GGTGAGATGAATTGGCAACA+AGG + tig0026197:65780-65799 Msa1427680:CDS 45.0%
GGAGGTAGAATCATTGCAGA+GGG + tig0026197:65803-65822 Msa1427680:CDS 45.0%
GTAGAATCATTGCAGAGGGA+AGG + tig0026197:65807-65826 Msa1427680:CDS 45.0%
GTCGAGGGTGAGTGAATATA+TGG - tig0026197:65898-65917 None:intergenic 45.0%
TGTGACAGCGGCAAGAATTT+CGG + tig0026197:65936-65955 Msa1427680:CDS 45.0%
! GAATTTCGGGTCCATGAACA+TGG + tig0026197:65950-65969 Msa1427680:CDS 45.0%
!! TGTTGGATGCAGCTTGTTGT+TGG - tig0026197:66013-66032 None:intergenic 45.0%
AACTTGTCTGCAGCTCAGAA+AGG + tig0026197:66053-66072 Msa1427680:CDS 45.0%
ACTTGTCTGCAGCTCAGAAA+GGG + tig0026197:66054-66073 Msa1427680:CDS 45.0%
! TCAACAGTTTTCCTGCAGAG+AGG - tig0026197:66131-66150 None:intergenic 45.0%
! GACTTTTGGCGAGATGACAT+TGG + tig0026197:66241-66260 Msa1427680:CDS 45.0%
! TTTTGGCGAGATGACATTGG+AGG + tig0026197:66244-66263 Msa1427680:CDS 45.0%
TGGTTAAAGCAGGGGTAGTT+AGG + tig0026197:66273-66292 Msa1427680:CDS 45.0%
GGTTAAAGCAGGGGTAGTTA+GGG + tig0026197:66274-66293 Msa1427680:CDS 45.0%
GTAGTTAGGGAACAACAGTC+TGG + tig0026197:66287-66306 Msa1427680:CDS 45.0%
!! CAGGCTGCTTCATTTGCTAT+TGG + tig0026197:66416-66435 Msa1427680:CDS 45.0%
!! GCTGCTTCATTTGCTATTGG+CGG + tig0026197:66419-66438 Msa1427680:CDS 45.0%
CTAGGGATAGTATAGGTACG+GGG + tig0026197:66549-66568 Msa1427680:CDS 45.0%
ACCTGTTAGTCCGGTTTCTT+CGG + tig0026197:66673-66692 Msa1427680:CDS 45.0%
TTAGTCCGGTTTCTTCGGAT+GGG + tig0026197:66678-66697 Msa1427680:CDS 45.0%
GGGATTGGAAACGAAAACTC+GGG + tig0026197:66698-66717 Msa1427680:CDS 45.0%
ATTGGAAACGAAAACTCGGG+TGG + tig0026197:66701-66720 Msa1427680:CDS 45.0%
GAAAACTCGGGTGGTCAATT+TGG + tig0026197:66710-66729 Msa1427680:CDS 45.0%
GGAAGAAAGAGGATGGTTGA+TGG + tig0026197:66755-66774 Msa1427680:CDS 45.0%
!! TGGTTGATGGTCCTGTTGAA+AGG + tig0026197:66768-66787 Msa1427680:CDS 45.0%
!! GGTTGATGGTCCTGTTGAAA+GGG + tig0026197:66769-66788 Msa1427680:CDS 45.0%
TTCTCAACTGAAACAGGCAC+TGG + tig0026197:67160-67179 Msa1427680:CDS 45.0%
TTCTTCAGGCTGAACTAGAG+AGG + tig0026197:67271-67290 Msa1427680:intron 45.0%
AGAGAGGAGAAGAAGACAAC+AGG + tig0026197:67287-67306 Msa1427680:CDS 45.0%
GATGAATTGGCAACAAGGGG+AGG + tig0026197:65785-65804 Msa1427680:CDS 50.0%
GGGAGGTAGAATCATTGCAG+AGG + tig0026197:65802-65821 Msa1427680:CDS 50.0%
AATTCTTGCCGCTGTCACAG+AGG - tig0026197:65935-65954 None:intergenic 50.0%
GTGACAGCGGCAAGAATTTC+GGG + tig0026197:65937-65956 Msa1427680:CDS 50.0%
GGAACAACAGTCTGGTATGC+CGG + tig0026197:66295-66314 Msa1427680:CDS 50.0%
!! GCTTCATTTGCTATTGGCGG+CGG + tig0026197:66422-66441 Msa1427680:CDS 50.0%
!! GGTTTGTTATGGAGGGAGAG+TGG + tig0026197:66592-66611 Msa1427680:CDS 50.0%
TATGGAGGGAGAGTGGTGAA+TGG + tig0026197:66599-66618 Msa1427680:CDS 50.0%
TGTGGCAGTGGCACAAACTA+TGG + tig0026197:66640-66659 Msa1427680:CDS 50.0%
GTGGCAGTGGCACAAACTAT+GGG + tig0026197:66641-66660 Msa1427680:CDS 50.0%
TGGCAGTGGCACAAACTATG+GGG + tig0026197:66642-66661 Msa1427680:CDS 50.0%
AGTGGCACAAACTATGGGGA+TGG + tig0026197:66646-66665 Msa1427680:CDS 50.0%
GTGGCACAAACTATGGGGAT+GGG + tig0026197:66647-66666 Msa1427680:CDS 50.0%
TCCGAAGAAACCGGACTAAC+AGG - tig0026197:66677-66696 None:intergenic 50.0%
GTTAGTCCGGTTTCTTCGGA+TGG + tig0026197:66677-66696 Msa1427680:CDS 50.0%
CCAATCCCATCCGAAGAAAC+CGG - tig0026197:66686-66705 None:intergenic 50.0%
TGATGGTCCTGTTGAAAGGG+TGG + tig0026197:66772-66791 Msa1427680:CDS 50.0%
!! TTGAAAGGGTGGTGGAGAGA+AGG + tig0026197:66783-66802 Msa1427680:CDS 50.0%
GATGAATTGGCAACAAGGGG+AGG + tig0026197:65785-65804 Msa1427680:CDS 50.0%
GGGAGGTAGAATCATTGCAG+AGG + tig0026197:65802-65821 Msa1427680:CDS 50.0%
AATTCTTGCCGCTGTCACAG+AGG - tig0026197:65935-65954 None:intergenic 50.0%
GTGACAGCGGCAAGAATTTC+GGG + tig0026197:65937-65956 Msa1427680:CDS 50.0%
GGAACAACAGTCTGGTATGC+CGG + tig0026197:66295-66314 Msa1427680:CDS 50.0%
!! GCTTCATTTGCTATTGGCGG+CGG + tig0026197:66422-66441 Msa1427680:CDS 50.0%
!! GGTTTGTTATGGAGGGAGAG+TGG + tig0026197:66592-66611 Msa1427680:CDS 50.0%
TATGGAGGGAGAGTGGTGAA+TGG + tig0026197:66599-66618 Msa1427680:CDS 50.0%
TGTGGCAGTGGCACAAACTA+TGG + tig0026197:66640-66659 Msa1427680:CDS 50.0%
GTGGCAGTGGCACAAACTAT+GGG + tig0026197:66641-66660 Msa1427680:CDS 50.0%
TGGCAGTGGCACAAACTATG+GGG + tig0026197:66642-66661 Msa1427680:CDS 50.0%
AGTGGCACAAACTATGGGGA+TGG + tig0026197:66646-66665 Msa1427680:CDS 50.0%
GTGGCACAAACTATGGGGAT+GGG + tig0026197:66647-66666 Msa1427680:CDS 50.0%
TCCGAAGAAACCGGACTAAC+AGG - tig0026197:66677-66696 None:intergenic 50.0%
GTTAGTCCGGTTTCTTCGGA+TGG + tig0026197:66677-66696 Msa1427680:CDS 50.0%
CCAATCCCATCCGAAGAAAC+CGG - tig0026197:66686-66705 None:intergenic 50.0%
TGATGGTCCTGTTGAAAGGG+TGG + tig0026197:66772-66791 Msa1427680:CDS 50.0%
!! TTGAAAGGGTGGTGGAGAGA+AGG + tig0026197:66783-66802 Msa1427680:CDS 50.0%
GGGAAGGAGAAGAAGCGATC+AGG + tig0026197:65823-65842 Msa1427680:CDS 55.0%
GCTGTGTTGGAACTCGTCGA+GGG - tig0026197:65913-65932 None:intergenic 55.0%
CAACACAGCCTCTGTGACAG+CGG + tig0026197:65924-65943 Msa1427680:CDS 55.0%
!! GTTTTCCTGCAGAGAGGTGC+AGG - tig0026197:66125-66144 None:intergenic 55.0%
!! ACCCCTCGACAACCGACTTT+TGG + tig0026197:66227-66246 Msa1427680:CDS 55.0%
GCCAAAAGTCGGTTGTCGAG+GGG - tig0026197:66231-66250 None:intergenic 55.0%
CGCCAAAAGTCGGTTGTCGA+GGG - tig0026197:66232-66251 None:intergenic 55.0%
TCGCCAAAAGTCGGTTGTCG+AGG - tig0026197:66233-66252 None:intergenic 55.0%
GTGAGATGACACTGCTGCTG+CGG - tig0026197:66342-66361 None:intergenic 55.0%
CAGCAGCAGTGTCATCTCAC+CGG + tig0026197:66342-66361 Msa1427680:CDS 55.0%
!! TCATTTGCTATTGGCGGCGG+CGG + tig0026197:66425-66444 Msa1427680:CDS 55.0%
TGTGCCACCGTTTGGTATGG+CGG - tig0026197:66473-66492 None:intergenic 55.0%
CCATACCAAACGGTGGCACA+GGG + tig0026197:66473-66492 Msa1427680:CDS 55.0%
TGGAGGAGTTGGAGAGCCTT+CGG + tig0026197:66499-66518 Msa1427680:CDS 55.0%
! AGTTGGAGAGCCTTCGGGTT+CGG + tig0026197:66505-66524 Msa1427680:CDS 55.0%
! CTTCGGGTTCGGGGTATGTT+GGG + tig0026197:66516-66535 Msa1427680:CDS 55.0%
GGTTCGGGGTATGTTGGGAA+TGG + tig0026197:66521-66540 Msa1427680:CDS 55.0%
CCTCCATAACAAACCGCTGG+CGG - tig0026197:66587-66606 None:intergenic 55.0%
!! CGCCAGCGGTTTGTTATGGA+GGG + tig0026197:66585-66604 Msa1427680:CDS 55.0%
CTCCCTCCATAACAAACCGC+TGG - tig0026197:66590-66609 None:intergenic 55.0%
GAGGGAGAGTGGTGAATGGA+GGG + tig0026197:66603-66622 Msa1427680:CDS 55.0%
AGGGAGAGTGGTGAATGGAG+GGG + tig0026197:66604-66623 Msa1427680:CDS 55.0%
GCACAAACTATGGGGATGGG+CGG + tig0026197:66650-66669 Msa1427680:CDS 55.0%
CCGGTTTCTTCGGATGGGAT+TGG + tig0026197:66683-66702 Msa1427680:CDS 55.0%
TGGTCCTGTTGAAAGGGTGG+TGG + tig0026197:66775-66794 Msa1427680:CDS 55.0%
CTCTCCACCACCCTTTCAAC+AGG - tig0026197:66782-66801 None:intergenic 55.0%
GGGAAGGAGAAGAAGCGATC+AGG + tig0026197:65823-65842 Msa1427680:CDS 55.0%
GCTGTGTTGGAACTCGTCGA+GGG - tig0026197:65913-65932 None:intergenic 55.0%
CAACACAGCCTCTGTGACAG+CGG + tig0026197:65924-65943 Msa1427680:CDS 55.0%
!! GTTTTCCTGCAGAGAGGTGC+AGG - tig0026197:66125-66144 None:intergenic 55.0%
!! ACCCCTCGACAACCGACTTT+TGG + tig0026197:66227-66246 Msa1427680:CDS 55.0%
GCCAAAAGTCGGTTGTCGAG+GGG - tig0026197:66231-66250 None:intergenic 55.0%
CGCCAAAAGTCGGTTGTCGA+GGG - tig0026197:66232-66251 None:intergenic 55.0%
TCGCCAAAAGTCGGTTGTCG+AGG - tig0026197:66233-66252 None:intergenic 55.0%
GTGAGATGACACTGCTGCTG+CGG - tig0026197:66342-66361 None:intergenic 55.0%
CAGCAGCAGTGTCATCTCAC+CGG + tig0026197:66342-66361 Msa1427680:CDS 55.0%
!! TCATTTGCTATTGGCGGCGG+CGG + tig0026197:66425-66444 Msa1427680:CDS 55.0%
TGTGCCACCGTTTGGTATGG+CGG - tig0026197:66473-66492 None:intergenic 55.0%
CCATACCAAACGGTGGCACA+GGG + tig0026197:66473-66492 Msa1427680:CDS 55.0%
TGGAGGAGTTGGAGAGCCTT+CGG + tig0026197:66499-66518 Msa1427680:CDS 55.0%
! AGTTGGAGAGCCTTCGGGTT+CGG + tig0026197:66505-66524 Msa1427680:CDS 55.0%
! CTTCGGGTTCGGGGTATGTT+GGG + tig0026197:66516-66535 Msa1427680:CDS 55.0%
GGTTCGGGGTATGTTGGGAA+TGG + tig0026197:66521-66540 Msa1427680:CDS 55.0%
CCTCCATAACAAACCGCTGG+CGG - tig0026197:66587-66606 None:intergenic 55.0%
!! CGCCAGCGGTTTGTTATGGA+GGG + tig0026197:66585-66604 Msa1427680:CDS 55.0%
CTCCCTCCATAACAAACCGC+TGG - tig0026197:66590-66609 None:intergenic 55.0%
GAGGGAGAGTGGTGAATGGA+GGG + tig0026197:66603-66622 Msa1427680:CDS 55.0%
AGGGAGAGTGGTGAATGGAG+GGG + tig0026197:66604-66623 Msa1427680:CDS 55.0%
GCACAAACTATGGGGATGGG+CGG + tig0026197:66650-66669 Msa1427680:CDS 55.0%
CCGGTTTCTTCGGATGGGAT+TGG + tig0026197:66683-66702 Msa1427680:CDS 55.0%
TGGTCCTGTTGAAAGGGTGG+TGG + tig0026197:66775-66794 Msa1427680:CDS 55.0%
CTCTCCACCACCCTTTCAAC+AGG - tig0026197:66782-66801 None:intergenic 55.0%
GGCTGTGTTGGAACTCGTCG+AGG - tig0026197:65914-65933 None:intergenic 60.0%
CGCTGTCACAGAGGCTGTGT+TGG - tig0026197:65926-65945 None:intergenic 60.0%
CGATTCCTGCACCTCTCTGC+AGG + tig0026197:66117-66136 Msa1427680:CDS 60.0%
CGGTTGTCGAGGGGTAGACT+CGG - tig0026197:66222-66241 None:intergenic 60.0%
!! GGTGGTGGTGCTATGGCAAC+CGG - tig0026197:66317-66336 None:intergenic 60.0%
ACTGCGGCGTAATGCTGCTG+GGG - tig0026197:66368-66387 None:intergenic 60.0%
CACTGCGGCGTAATGCTGCT+GGG - tig0026197:66369-66388 None:intergenic 60.0%
ACACTGCGGCGTAATGCTGC+TGG - tig0026197:66370-66389 None:intergenic 60.0%
GGTTGCGCCGCCATACCAAA+CGG + tig0026197:66463-66482 Msa1427680:CDS 60.0%
GCCATACCAAACGGTGGCAC+AGG + tig0026197:66472-66491 Msa1427680:CDS 60.0%
CCCTGTGCCACCGTTTGGTA+TGG - tig0026197:66476-66495 None:intergenic 60.0%
TACCAAACGGTGGCACAGGG+AGG + tig0026197:66476-66495 Msa1427680:CDS 60.0%
GGAGGAGTTGGAGAGCCTTC+GGG + tig0026197:66500-66519 Msa1427680:CDS 60.0%
! GTTGGAGAGCCTTCGGGTTC+GGG + tig0026197:66506-66525 Msa1427680:CDS 60.0%
! TTGGAGAGCCTTCGGGTTCG+GGG + tig0026197:66507-66526 Msa1427680:CDS 60.0%
CCAACATACCCCGAACCCGA+AGG - tig0026197:66518-66537 None:intergenic 60.0%
! CCTTCGGGTTCGGGGTATGT+TGG + tig0026197:66515-66534 Msa1427680:CDS 60.0%
CCATAACAAACCGCTGGCGG+CGG - tig0026197:66584-66603 None:intergenic 60.0%
!! CCGCCAGCGGTTTGTTATGG+AGG + tig0026197:66584-66603 Msa1427680:CDS 60.0%
GGAGGGAGAGTGGTGAATGG+AGG + tig0026197:66602-66621 Msa1427680:CDS 60.0%
GAGAGTGGTGAATGGAGGGG+CGG + tig0026197:66607-66626 Msa1427680:CDS 60.0%
AGAGTGGTGAATGGAGGGGC+GGG + tig0026197:66608-66627 Msa1427680:CDS 60.0%
GATGGGCGGACCTGTTAGTC+CGG + tig0026197:66664-66683 Msa1427680:CDS 60.0%
TGGTGGAGAGAAGGCAGAGG+AGG + tig0026197:66792-66811 Msa1427680:CDS 60.0%
GGCTGTGTTGGAACTCGTCG+AGG - tig0026197:65914-65933 None:intergenic 60.0%
CGCTGTCACAGAGGCTGTGT+TGG - tig0026197:65926-65945 None:intergenic 60.0%
CGATTCCTGCACCTCTCTGC+AGG + tig0026197:66117-66136 Msa1427680:CDS 60.0%
CGGTTGTCGAGGGGTAGACT+CGG - tig0026197:66222-66241 None:intergenic 60.0%
!! GGTGGTGGTGCTATGGCAAC+CGG - tig0026197:66317-66336 None:intergenic 60.0%
ACTGCGGCGTAATGCTGCTG+GGG - tig0026197:66368-66387 None:intergenic 60.0%
CACTGCGGCGTAATGCTGCT+GGG - tig0026197:66369-66388 None:intergenic 60.0%
ACACTGCGGCGTAATGCTGC+TGG - tig0026197:66370-66389 None:intergenic 60.0%
GGTTGCGCCGCCATACCAAA+CGG + tig0026197:66463-66482 Msa1427680:CDS 60.0%
GCCATACCAAACGGTGGCAC+AGG + tig0026197:66472-66491 Msa1427680:CDS 60.0%
CCCTGTGCCACCGTTTGGTA+TGG - tig0026197:66476-66495 None:intergenic 60.0%
TACCAAACGGTGGCACAGGG+AGG + tig0026197:66476-66495 Msa1427680:CDS 60.0%
GGAGGAGTTGGAGAGCCTTC+GGG + tig0026197:66500-66519 Msa1427680:CDS 60.0%
! GTTGGAGAGCCTTCGGGTTC+GGG + tig0026197:66506-66525 Msa1427680:CDS 60.0%
! TTGGAGAGCCTTCGGGTTCG+GGG + tig0026197:66507-66526 Msa1427680:CDS 60.0%
CCAACATACCCCGAACCCGA+AGG - tig0026197:66518-66537 None:intergenic 60.0%
! CCTTCGGGTTCGGGGTATGT+TGG + tig0026197:66515-66534 Msa1427680:CDS 60.0%
CCATAACAAACCGCTGGCGG+CGG - tig0026197:66584-66603 None:intergenic 60.0%
!! CCGCCAGCGGTTTGTTATGG+AGG + tig0026197:66584-66603 Msa1427680:CDS 60.0%
GGAGGGAGAGTGGTGAATGG+AGG + tig0026197:66602-66621 Msa1427680:CDS 60.0%
GAGAGTGGTGAATGGAGGGG+CGG + tig0026197:66607-66626 Msa1427680:CDS 60.0%
AGAGTGGTGAATGGAGGGGC+GGG + tig0026197:66608-66627 Msa1427680:CDS 60.0%
GATGGGCGGACCTGTTAGTC+CGG + tig0026197:66664-66683 Msa1427680:CDS 60.0%
TGGTGGAGAGAAGGCAGAGG+AGG + tig0026197:66792-66811 Msa1427680:CDS 60.0%
! TGCGGCAGGTGGTGGTGCTA+TGG - tig0026197:66324-66343 None:intergenic 65.0%
GATGACACTGCTGCTGCGGC+AGG - tig0026197:66338-66357 None:intergenic 65.0%
!! TTTGCTATTGGCGGCGGCGG+CGG + tig0026197:66428-66447 Msa1427680:CDS 65.0%
CGGCGGCGGGAATCTGAATG+TGG + tig0026197:66442-66461 Msa1427680:CDS 65.0%
TGCGCCGCCATACCAAACGG+TGG + tig0026197:66466-66485 Msa1427680:CDS 65.0%
CACCTCCCTGTGCCACCGTT+TGG - tig0026197:66481-66500 None:intergenic 65.0%
CAAACGGTGGCACAGGGAGG+TGG + tig0026197:66479-66498 Msa1427680:CDS 65.0%
GCACAGGGAGGTGGAGGAGT+TGG + tig0026197:66488-66507 Msa1427680:CDS 65.0%
TAACAAACCGCTGGCGGCGG+CGG - tig0026197:66581-66600 None:intergenic 65.0%
!! CCGCCGCCAGCGGTTTGTTA+TGG + tig0026197:66581-66600 Msa1427680:CDS 65.0%
AATGGAGGGGCGGGCGGTTA+TGG + tig0026197:66617-66636 Msa1427680:CDS 65.0%
GGGCGGTTATGGTGTGGCAG+TGG + tig0026197:66628-66647 Msa1427680:CDS 65.0%
!! GGGTGGTGGAGAGAAGGCAG+AGG + tig0026197:66789-66808 Msa1427680:CDS 65.0%
! TGCGGCAGGTGGTGGTGCTA+TGG - tig0026197:66324-66343 None:intergenic 65.0%
GATGACACTGCTGCTGCGGC+AGG - tig0026197:66338-66357 None:intergenic 65.0%
!! TTTGCTATTGGCGGCGGCGG+CGG + tig0026197:66428-66447 Msa1427680:CDS 65.0%
CGGCGGCGGGAATCTGAATG+TGG + tig0026197:66442-66461 Msa1427680:CDS 65.0%
TGCGCCGCCATACCAAACGG+TGG + tig0026197:66466-66485 Msa1427680:CDS 65.0%
CACCTCCCTGTGCCACCGTT+TGG - tig0026197:66481-66500 None:intergenic 65.0%
CAAACGGTGGCACAGGGAGG+TGG + tig0026197:66479-66498 Msa1427680:CDS 65.0%
GCACAGGGAGGTGGAGGAGT+TGG + tig0026197:66488-66507 Msa1427680:CDS 65.0%
TAACAAACCGCTGGCGGCGG+CGG - tig0026197:66581-66600 None:intergenic 65.0%
!! CCGCCGCCAGCGGTTTGTTA+TGG + tig0026197:66581-66600 Msa1427680:CDS 65.0%
AATGGAGGGGCGGGCGGTTA+TGG + tig0026197:66617-66636 Msa1427680:CDS 65.0%
GGGCGGTTATGGTGTGGCAG+TGG + tig0026197:66628-66647 Msa1427680:CDS 65.0%
!! GGGTGGTGGAGAGAAGGCAG+AGG + tig0026197:66789-66808 Msa1427680:CDS 65.0%
ACTGCTGCTGCGGCAGGTGG+TGG - tig0026197:66332-66351 None:intergenic 70.0%
GACACTGCTGCTGCGGCAGG+TGG - tig0026197:66335-66354 None:intergenic 70.0%
CGGCGTAATGCTGCTGGGGC+CGG - tig0026197:66364-66383 None:intergenic 70.0%
! TTGCTATTGGCGGCGGCGGC+GGG + tig0026197:66429-66448 Msa1427680:CDS 70.0%
ACGGTGGCACAGGGAGGTGG+AGG + tig0026197:66482-66501 Msa1427680:CDS 70.0%
GTGGTGAATGGAGGGGCGGG+CGG + tig0026197:66611-66630 Msa1427680:CDS 70.0%
AGGGGCGGGCGGTTATGGTG+TGG + tig0026197:66622-66641 Msa1427680:CDS 70.0%
ACTGCTGCTGCGGCAGGTGG+TGG - tig0026197:66332-66351 None:intergenic 70.0%
GACACTGCTGCTGCGGCAGG+TGG - tig0026197:66335-66354 None:intergenic 70.0%
CGGCGTAATGCTGCTGGGGC+CGG - tig0026197:66364-66383 None:intergenic 70.0%
! TTGCTATTGGCGGCGGCGGC+GGG + tig0026197:66429-66448 Msa1427680:CDS 70.0%
ACGGTGGCACAGGGAGGTGG+AGG + tig0026197:66482-66501 Msa1427680:CDS 70.0%
GTGGTGAATGGAGGGGCGGG+CGG + tig0026197:66611-66630 Msa1427680:CDS 70.0%
AGGGGCGGGCGGTTATGGTG+TGG + tig0026197:66622-66641 Msa1427680:CDS 70.0%
GTATCCTCCGCCGCCGCCAG+CGG + tig0026197:66571-66590 Msa1427680:CDS 75.0%
GTATCCTCCGCCGCCGCCAG+CGG + tig0026197:66571-66590 Msa1427680:CDS 75.0%
! CAAACCGCTGGCGGCGGCGG+AGG - tig0026197:66578-66597 None:intergenic 80.0%
! CAAACCGCTGGCGGCGGCGG+AGG - tig0026197:66578-66597 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0026197 gene 65765 67514 65765 ID=Msa1427680;Name=Msa1427680
tig0026197 mRNA 65765 67514 65765 ID=Msa1427680-mRNA-1;Parent=Msa1427680;Name=Msa1427680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|4|0|431
tig0026197 exon 65765 66862 65765 ID=Msa1427680-mRNA-1:exon:5549;Parent=Msa1427680-mRNA-1
tig0026197 exon 67110 67181 67110 ID=Msa1427680-mRNA-1:exon:5550;Parent=Msa1427680-mRNA-1
tig0026197 exon 67279 67308 67279 ID=Msa1427680-mRNA-1:exon:5551;Parent=Msa1427680-mRNA-1
tig0026197 exon 67419 67514 67419 ID=Msa1427680-mRNA-1:exon:5552;Parent=Msa1427680-mRNA-1
tig0026197 CDS 65765 66862 65765 ID=Msa1427680-mRNA-1:cds;Parent=Msa1427680-mRNA-1
tig0026197 CDS 67110 67181 67110 ID=Msa1427680-mRNA-1:cds;Parent=Msa1427680-mRNA-1
tig0026197 CDS 67279 67308 67279 ID=Msa1427680-mRNA-1:cds;Parent=Msa1427680-mRNA-1
tig0026197 CDS 67419 67514 67419 ID=Msa1427680-mRNA-1:cds;Parent=Msa1427680-mRNA-1
Gene Sequence

>Msa1427680

ATGGTGGTAAGAGAAGGTGAGATGAATTGGCAACAAGGGGAGGTAGAATCATTGCAGAGGGAAGGAGAAGAAGCGATCAGGAATGACGTCAACAATGTCATTTCTTCATCGCTTGGAAGACAATCGTCATCCATATATTCACTCACCCTCGACGAGTTCCAACACAGCCTCTGTGACAGCGGCAAGAATTTCGGGTCCATGAACATGGATGAGTTTCTAAGTAGTATTTGGAATGCAGAAGAAAACCAACAACAAGCTGCATCCAACAATAATAACAGCAACAACAATAACTTGTCTGCAGCTCAGAAAGGGATTAGCAAACAGGCAAGTCTTCCTCGCCAAAATTCGTTATCGATTCCTGCACCTCTCTGCAGGAAAACTGTTGAACAAGTTTGGTCTGAGATACACAAAGAACAACAGAACCATCACAACATCAACAATGTTGCTCAGAATACCGAGTCTACCCCTCGACAACCGACTTTTGGCGAGATGACATTGGAGGATTTCTTGGTTAAAGCAGGGGTAGTTAGGGAACAACAGTCTGGTATGCCGGTTGCCATAGCACCACCACCTGCCGCAGCAGCAGTGTCATCTCACCGGCCCCAGCAGCATTACGCCGCAGTGTATCCTAATAACAACTCTACAATGGCTCAGGCTGCTTCATTTGCTATTGGCGGCGGCGGCGGGAATCTGAATGTGGTTGCGCCGCCATACCAAACGGTGGCACAGGGAGGTGGAGGAGTTGGAGAGCCTTCGGGTTCGGGGTATGTTGGGAATGGTAAGACTAGGGATAGTATAGGTACGGGGTATCCTCCGCCGCCGCCAGCGGTTTGTTATGGAGGGAGAGTGGTGAATGGAGGGGCGGGCGGTTATGGTGTGGCAGTGGCACAAACTATGGGGATGGGCGGACCTGTTAGTCCGGTTTCTTCGGATGGGATTGGAAACGAAAACTCGGGTGGTCAATTTGGGATTGATATGAATGGTTTAAGAGGAAGAAAGAGGATGGTTGATGGTCCTGTTGAAAGGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCAGCAAGATCTAGAGCCAGAAAACAGGCATACACAGTTGAATTAGAAGCAGAACTGAATCAATTAAGAGAAGAGAATTCTCAACTGAAACAGGCACTGGCTGAACTAGAGAGGAGAAGAAGACAACAGTGTTTAGAGGAAACAAACGTGAGAGTTCAAACCAAAGCTCAGAAAGCAAAAGAGAAACTGAGAGGCTTAAGAAGGAATACAAGTTGTCATATGTGA
Protein sequence

>Msa1427680

MVVREGEMNWQQGEVESLQREGEEAIRNDVNNVISSSLGRQSSSIYSLTLDEFQHSLCDSGKNFGSMNMDEFLSSIWNAEENQQQAASNNNNSNNNNLSAAQKGISKQASLPRQNSLSIPAPLCRKTVEQVWSEIHKEQQNHHNINNVAQNTESTPRQPTFGEMTLEDFLVKAGVVREQQSGMPVAIAPPPAAAAVSSHRPQQHYAAVYPNNNSTMAQAASFAIGGGGGNLNVVAPPYQTVAQGGGGVGEPSGSGYVGNGKTRDSIGTGYPPPPPAVCYGGRVVNGGAGGYGVAVAQTMGMGGPVSPVSSDGIGNENSGGQFGIDMNGLRGRKRMVDGPVERVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENSQLKQALAELERRRRQQCLEETNVRVQTKAQKAKEKLRGLRRNTSCHM*