Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345950 | KEH30016.1 | 95.378 | 476 | 22 | 0 | 1 | 476 | 1 | 476 | 0.0 | 899 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345950 | A0A072UKT1 | 95.378 | 476 | 22 | 0 | 1 | 476 | 1 | 476 | 0.0 | 899 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0193850 | Msa1345950 | 0.826580 | 2.509506e-54 | -8.615850e-47 |
| Msa0235710 | Msa1345950 | 0.804011 | 2.650926e-49 | -8.615850e-47 |
| Msa0314170 | Msa1345950 | 0.806082 | 9.776299e-50 | -8.615850e-47 |
| Msa0546800 | Msa1345950 | 0.851079 | 1.121186e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345950 | MtrunA17_Chr4g0028651 | 95.378 | 476 | 22 | 0 | 1 | 476 | 5 | 480 | 0.0 | 899 |
| Msa1345950 | MtrunA17_Chr5g0435281 | 35.593 | 118 | 71 | 3 | 350 | 465 | 178 | 292 | 4.38e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345950 | AT5G60720.1 | 47.454 | 432 | 153 | 12 | 101 | 476 | 56 | 469 | 1.62e-94 | 300 |
Find 90 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACATAAGACTTGGTTTC+TGG | 0.166945 | tig0008014:+365 | None:intergenic |
| CAGTTTGAAGAGTGCTAATT+TGG | 0.181753 | tig0008014:+1428 | None:intergenic |
| ACACATAACTTCTCTTTCTT+TGG | 0.210882 | tig0008014:-3596 | Msa1345950:CDS |
| TACCTTAGAAGGAAGAAAAT+TGG | 0.249973 | tig0008014:+2006 | None:intergenic |
| ACTTGTTTGGTTGCCACTTT+AGG | 0.257192 | tig0008014:+539 | None:intergenic |
| TATGTTCACTTCAAGTTCTA+TGG | 0.258096 | tig0008014:-254 | Msa1345950:CDS |
| CTTTAAGCTCAAGAAGCTTC+CGG | 0.292568 | tig0008014:-405 | Msa1345950:CDS |
| GGTTCATGAAATATTGGATA+TGG | 0.316220 | tig0008014:-2065 | Msa1345950:CDS |
| TATTGGATATGGTAAATAAT+AGG | 0.316666 | tig0008014:-2054 | Msa1345950:CDS |
| AATTCTAAGCGTTTCATGTT+TGG | 0.316944 | tig0008014:-3485 | Msa1345950:CDS |
| AGAAAAGGTTCATGAAATAT+TGG | 0.331517 | tig0008014:-2071 | Msa1345950:CDS |
| AAGAAGCTTCCGGGTCGATC+TGG | 0.336608 | tig0008014:-395 | Msa1345950:CDS |
| GAACATTGTATTACCTTAGA+AGG | 0.364713 | tig0008014:+1995 | None:intergenic |
| TTTAAGCTCAAGAAGCTTCC+GGG | 0.364939 | tig0008014:-404 | Msa1345950:CDS |
| AACATCAAGAGCAATGGAAT+TGG | 0.365837 | tig0008014:-464 | Msa1345950:CDS |
| CTGCTTCTTTGAACAGAACT+AGG | 0.368104 | tig0008014:+1295 | None:intergenic |
| TACCTTAACTTTCTTAGTAA+TGG | 0.370288 | tig0008014:+199 | None:intergenic |
| TGAAAATTTGTTGATGAAGT+TGG | 0.375911 | tig0008014:+3654 | None:intergenic |
| TATTGGTCCTTACAAGAATC+TGG | 0.381010 | tig0008014:-278 | Msa1345950:CDS |
| CAAATTAGCACTCTTCAAAC+TGG | 0.386190 | tig0008014:-1427 | Msa1345950:CDS |
| ATGCTTTCAGATAACTTGTT+TGG | 0.391339 | tig0008014:+526 | None:intergenic |
| ACATGAATAATGTACATATC+AGG | 0.399942 | tig0008014:-174 | Msa1345950:CDS |
| CTTCTTCATCTTCATAATGT+TGG | 0.403192 | tig0008014:+3546 | None:intergenic |
| ACCTTAGAAGGAAGAAAATT+GGG | 0.416248 | tig0008014:+2007 | None:intergenic |
| GAATGCAATGATCTTGAAAC+AGG | 0.417102 | tig0008014:+430 | None:intergenic |
| GAGTCCATTCCTAGGGATAT+TGG | 0.417480 | tig0008014:-295 | Msa1345950:CDS |
| CAACATAAGACTTGGTTTCT+GGG | 0.418995 | tig0008014:+366 | None:intergenic |
| TTTCATAAGTAAAGCTATCA+AGG | 0.422572 | tig0008014:-1227 | Msa1345950:CDS |
| TTCCATTACTAAGAAAGTTA+AGG | 0.422871 | tig0008014:-201 | Msa1345950:CDS |
| GAAGGGCTTGATATAAACTT+TGG | 0.435869 | tig0008014:+229 | None:intergenic |
| TCTGAATCAAAGATACCATA+TGG | 0.439160 | tig0008014:+319 | None:intergenic |
| AGTTTGAAGAGTGCTAATTT+GGG | 0.447313 | tig0008014:+1429 | None:intergenic |
| CACTATGCTTCAAAGGTTGT+TGG | 0.447968 | tig0008014:-2101 | Msa1345950:CDS |
| GTTGTTGGACCAAGAAGAAA+AGG | 0.462739 | tig0008014:-2086 | Msa1345950:CDS |
| TTTCATGTTTGGCTCTTCCA+TGG | 0.465054 | tig0008014:-3474 | Msa1345950:CDS |
| TTTGTTGTGGTTGTGAGTGC+TGG | 0.467108 | tig0008014:+3705 | None:intergenic |
| ATTCAGAAGAGTCCATTCCT+AGG | 0.471954 | tig0008014:-303 | Msa1345950:CDS |
| AGTTATGTGTTGAAGTTGAG+AGG | 0.478235 | tig0008014:+3609 | None:intergenic |
| CATTGCTCATCAAATTCCCT+TGG | 0.485674 | tig0008014:+1353 | None:intergenic |
| CAGAAGAGAATGACCTAAAG+TGG | 0.486770 | tig0008014:-552 | Msa1345950:CDS |
| AGAAGCTTCCGGGTCGATCT+GGG | 0.491267 | tig0008014:-394 | Msa1345950:CDS |
| AATTTCATGAAAGAGTTACT+AGG | 0.496129 | tig0008014:-1108 | Msa1345950:CDS |
| ATAGATATAGCTGAACCGTT+TGG | 0.512371 | tig0008014:+2031 | None:intergenic |
| TTGTGGTTGTGAGTGCTGGT+AGG | 0.515279 | tig0008014:+3709 | None:intergenic |
| TCCTTGTGCAACATAAGACT+TGG | 0.518516 | tig0008014:+358 | None:intergenic |
| ACCTTAGGTGATGGATGGCG+CGG | 0.520139 | tig0008014:+1046 | None:intergenic |
| ATGGTAAATAATAGGCCAAA+CGG | 0.530946 | tig0008014:-2046 | Msa1345950:CDS |
| AACATAACCAGATTCTTGTA+AGG | 0.532047 | tig0008014:+271 | None:intergenic |
| TTATGTTGCACAAGGAATCA+AGG | 0.533454 | tig0008014:-351 | Msa1345950:CDS |
| TCAAGGCAGCAAGATCCATA+TGG | 0.535834 | tig0008014:-334 | Msa1345950:CDS |
| AACAATATTAAAACAACATG+GGG | 0.535975 | tig0008014:+3511 | None:intergenic |
| AACAGGTCACTATGCTTCAA+AGG | 0.544746 | tig0008014:-2108 | Msa1345950:intron |
| CGCGGGTCACGCATAGGCGA+GGG | 0.553869 | tig0008014:+1064 | None:intergenic |
| GTTATGTGTTGAAGTTGAGA+GGG | 0.554364 | tig0008014:+3610 | None:intergenic |
| CCCGCGCCATCCATCACCTA+AGG | 0.565330 | tig0008014:-1047 | Msa1345950:intron |
| GTCCTGCATACCTTAGGTGA+TGG | 0.566537 | tig0008014:+1037 | None:intergenic |
| GGATCAAGCAGTGACCTAGT+TGG | 0.569135 | tig0008014:+583 | None:intergenic |
| TTCAGAAGAGTCCATTCCTA+GGG | 0.570102 | tig0008014:-302 | Msa1345950:CDS |
| AGAAGATAATGACACAAGCT+TGG | 0.572072 | tig0008014:+3571 | None:intergenic |
| CTTAGTAATGGAATAGACGA+AGG | 0.572571 | tig0008014:+211 | None:intergenic |
| TGCATACCTTAGGTGATGGA+TGG | 0.572769 | tig0008014:+1041 | None:intergenic |
| AGGACCAATATCCCTAGGAA+TGG | 0.574284 | tig0008014:+291 | None:intergenic |
| GTTGTGAGTGCTGGTAGGAG+TGG | 0.575062 | tig0008014:+3714 | None:intergenic |
| TCATTCTCTTCTGATAGAAG+TGG | 0.575222 | tig0008014:+562 | None:intergenic |
| GCAGTAGTAATGTTCATGAA+AGG | 0.578237 | tig0008014:-1276 | Msa1345950:CDS |
| GGATGGCGCGGGTCACGCAT+AGG | 0.579444 | tig0008014:+1058 | None:intergenic |
| TAGTAATGTTCATGAAAGGA+TGG | 0.582716 | tig0008014:-1272 | Msa1345950:CDS |
| GAAACAATATTAAAACAACA+TGG | 0.586411 | tig0008014:+3509 | None:intergenic |
| AAACAATATTAAAACAACAT+GGG | 0.586415 | tig0008014:+3510 | None:intergenic |
| GCGCGGGTCACGCATAGGCG+AGG | 0.588761 | tig0008014:+1063 | None:intergenic |
| TTGTAAGGACCAATATCCCT+AGG | 0.593631 | tig0008014:+286 | None:intergenic |
| TTAGTAATGGAATAGACGAA+GGG | 0.594113 | tig0008014:+212 | None:intergenic |
| ACTCAGAACATCAAGAGCAA+TGG | 0.595023 | tig0008014:-470 | Msa1345950:CDS |
| TTGTGAGTGCTGGTAGGAGT+GGG | 0.597509 | tig0008014:+3715 | None:intergenic |
| AAGGATGGCATTTGAAACAA+AGG | 0.605174 | tig0008014:-1257 | Msa1345950:CDS |
| TTCATAAGTAAAGCTATCAA+GGG | 0.605273 | tig0008014:-1226 | Msa1345950:CDS |
| CCTTAGGTGATGGATGGCGC+GGG | 0.611524 | tig0008014:+1047 | None:intergenic |
| ATCTAGTTGAGTGTGATCCA+TGG | 0.613003 | tig0008014:+3457 | None:intergenic |
| ACTTACAATATCAATGTGAG+AGG | 0.624337 | tig0008014:+3412 | None:intergenic |
| GGGTCACGCATAGGCGAGGG+AGG | 0.627228 | tig0008014:+1067 | None:intergenic |
| ATTGTTAGCAGAGCTAGTCA+TGG | 0.628790 | tig0008014:-1479 | Msa1345950:CDS |
| GGGTCGATCCCAGATCGACC+CGG | 0.632482 | tig0008014:+386 | None:intergenic |
| ACTCACAACCACAACAAAGA+CGG | 0.640564 | tig0008014:-3700 | Msa1345950:CDS |
| ACCAAGTCTTATGTTGCACA+AGG | 0.641062 | tig0008014:-359 | Msa1345950:CDS |
| CAATATTAAAACAACATGGG+GGG | 0.643988 | tig0008014:+3513 | None:intergenic |
| TGCACTTGGATCTTCCAACT+AGG | 0.652722 | tig0008014:-597 | Msa1345950:CDS |
| ACGTAATCTAGACATGCACT+TGG | 0.661998 | tig0008014:-611 | Msa1345950:CDS |
| CTTACAATATCAATGTGAGA+GGG | 0.675598 | tig0008014:+3413 | None:intergenic |
| ACAATATTAAAACAACATGG+GGG | 0.689649 | tig0008014:+3512 | None:intergenic |
| ACATGAACAAGAAATCACCA+AGG | 0.745029 | tig0008014:-1398 | Msa1345950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATATTAGTAAATGT+CGG | - | tig0008014:1185-1204 | Msa1345950:CDS | 10.0% |
| !! | TATTATTCCTATAAATATAT+AGG | - | tig0008014:1660-1679 | Msa1345950:intron | 10.0% |
| !! | ATTATTCCTATAAATATATA+GGG | - | tig0008014:1661-1680 | Msa1345950:intron | 10.0% |
| !! | AAACAATATTAAAACAACAT+GGG | + | tig0008014:380-399 | None:intergenic | 15.0% |
| !!! | TACTTAATAAATCTTTTGAT+AGG | + | tig0008014:1083-1102 | None:intergenic | 15.0% |
| !! | TTTATAGTAATGTATTAAGA+TGG | - | tig0008014:1448-1467 | Msa1345950:CDS | 15.0% |
| !! | TTATTCCTATAAATATATAG+GGG | - | tig0008014:1662-1681 | Msa1345950:intron | 15.0% |
| !! | GTAAAATACAATTATAAAAG+TGG | - | tig0008014:2157-2176 | Msa1345950:intron | 15.0% |
| !!! | CAAGCAATTTTTTTTTTTAT+TGG | + | tig0008014:2343-2362 | None:intergenic | 15.0% |
| !! | ATTATGATTTATGATATCTA+GGG | + | tig0008014:2954-2973 | None:intergenic | 15.0% |
| !! | AATTATGATTTATGATATCT+AGG | + | tig0008014:2955-2974 | None:intergenic | 15.0% |
| !! | AAGAAACATATATAATAAGA+TGG | + | tig0008014:3031-3050 | None:intergenic | 15.0% |
| !!! | ATAGACTTGATTTTAAAAAT+TGG | - | tig0008014:3150-3169 | Msa1345950:intron | 15.0% |
| !! | AACAATATTAAAACAACATG+GGG | + | tig0008014:379-398 | None:intergenic | 20.0% |
| !! | GAAACAATATTAAAACAACA+TGG | + | tig0008014:381-400 | None:intergenic | 20.0% |
| !! | CTAAATTATGAATGACAATA+TGG | + | tig0008014:502-521 | None:intergenic | 20.0% |
| !! | TAATATTGGAATCACAATTA+TGG | + | tig0008014:687-706 | None:intergenic | 20.0% |
| !! | TTAACGCACAAAAATAATAT+TGG | + | tig0008014:701-720 | None:intergenic | 20.0% |
| !!! | TAATAAATCTTTTGATAGGA+TGG | + | tig0008014:1079-1098 | None:intergenic | 20.0% |
| !! | TTCAATAATTTAACTGTTGA+TGG | + | tig0008014:1292-1311 | None:intergenic | 20.0% |
| !! | AATGGCATATATCATTAAAT+AGG | - | tig0008014:1627-1646 | Msa1345950:intron | 20.0% |
| !! | CTATATACCAAAAAATTCAA+TGG | - | tig0008014:1692-1711 | Msa1345950:intron | 20.0% |
| !! | TATTGGATATGGTAAATAAT+AGG | - | tig0008014:1833-1852 | Msa1345950:intron | 20.0% |
| !! | GTAAAGCAAAAATATATATG+AGG | + | tig0008014:1919-1938 | None:intergenic | 20.0% |
| !! | CAAGGTAATATAATGTTATA+GGG | - | tig0008014:2006-2025 | Msa1345950:intron | 20.0% |
| !! | AATATAATGTTATAGGGATA+TGG | - | tig0008014:2012-2031 | Msa1345950:CDS | 20.0% |
| !! | ATATAATGTTATAGGGATAT+GGG | - | tig0008014:2013-2032 | Msa1345950:CDS | 20.0% |
| !!! | TAATTGTATTTTACCAGTTA+TGG | + | tig0008014:2151-2170 | None:intergenic | 20.0% |
| !!! | TTTTTAAAATCAAGTCTATG+TGG | + | tig0008014:3149-3168 | None:intergenic | 20.0% |
| !! | ATTGTAACAAAACGAATATT+TGG | - | tig0008014:3207-3226 | Msa1345950:intron | 20.0% |
| !! | TTGTAACAAAACGAATATTT+GGG | - | tig0008014:3208-3227 | Msa1345950:intron | 20.0% |
| !!! | TGAAAATTTGTTGATGAAGT+TGG | + | tig0008014:236-255 | None:intergenic | 25.0% |
| ! | ACAATATTAAAACAACATGG+GGG | + | tig0008014:378-397 | None:intergenic | 25.0% |
| ! | AAACAAAAAGAAAAGGACAA+GGG | + | tig0008014:873-892 | None:intergenic | 25.0% |
| ! | ATAATATTAGTAAATGTCGG+TGG | - | tig0008014:1188-1207 | Msa1345950:CDS | 25.0% |
| ! | ATACTAATTAGTCCAAACTT+TGG | - | tig0008014:1539-1558 | Msa1345950:intron | 25.0% |
| ! | AAACTTATAGTTCCAAAGTT+TGG | + | tig0008014:1554-1573 | None:intergenic | 25.0% |
| !!! | TAAGTTTGCTATTTTTGTCA+AGG | - | tig0008014:1567-1586 | Msa1345950:intron | 25.0% |
| !!! | AAGTTTGCTATTTTTGTCAA+GGG | - | tig0008014:1568-1587 | Msa1345950:intron | 25.0% |
| ! | TTAATGATATATGCCATTGA+GGG | + | tig0008014:1625-1644 | None:intergenic | 25.0% |
| ! | TTTAATGATATATGCCATTG+AGG | + | tig0008014:1626-1645 | None:intergenic | 25.0% |
| ! | TAACTCCCCTATATATTTAT+AGG | + | tig0008014:1670-1689 | None:intergenic | 25.0% |
| !!! | CTATATGCCATTGAATTTTT+TGG | + | tig0008014:1702-1721 | None:intergenic | 25.0% |
| ! | CAAAAAATTCAATGGCATAT+AGG | - | tig0008014:1700-1719 | Msa1345950:intron | 25.0% |
| !!! | GACTTGTTAATGTAATAAAC+AGG | - | tig0008014:1762-1781 | Msa1345950:intron | 25.0% |
| ! | AGAAAAGGTTCATGAAATAT+TGG | - | tig0008014:1816-1835 | Msa1345950:intron | 25.0% |
| ! | TTCAAAACTTCATATATGCA+AGG | - | tig0008014:1988-2007 | Msa1345950:intron | 25.0% |
| ! | GCAAGGTAATATAATGTTAT+AGG | - | tig0008014:2005-2024 | Msa1345950:intron | 25.0% |
| ! | AAACATTGAAACTTCATGTT+GGG | + | tig0008014:2098-2117 | None:intergenic | 25.0% |
| !! | TTTTACCAGTTATGGTTTAA+AGG | + | tig0008014:2143-2162 | None:intergenic | 25.0% |
| ! | TAACACTGTTGTAATAAACT+AGG | - | tig0008014:2180-2199 | Msa1345950:intron | 25.0% |
| !!! | AATTTTTGACTTAGATTCCT+TGG | + | tig0008014:2509-2528 | None:intergenic | 25.0% |
| ! | AGGAATCTAAGTCAAAAATT+TGG | - | tig0008014:2509-2528 | Msa1345950:intron | 25.0% |
| ! | TTTCATAAGTAAAGCTATCA+AGG | - | tig0008014:2660-2679 | Msa1345950:intron | 25.0% |
| ! | TTCATAAGTAAAGCTATCAA+GGG | - | tig0008014:2661-2680 | Msa1345950:intron | 25.0% |
| ! | AATTTCATGAAAGAGTTACT+AGG | - | tig0008014:2779-2798 | Msa1345950:intron | 25.0% |
| ! | CATACATACACGAATAAATT+GGG | + | tig0008014:2882-2901 | None:intergenic | 25.0% |
| ! | ACATACATACACGAATAAAT+TGG | + | tig0008014:2883-2902 | None:intergenic | 25.0% |
| ! | ATAATAAGATGGATGCTAAA+GGG | + | tig0008014:3020-3039 | None:intergenic | 25.0% |
| ! | TATAATAAGATGGATGCTAA+AGG | + | tig0008014:3021-3040 | None:intergenic | 25.0% |
| ! | TTCCATTACTAAGAAAGTTA+AGG | - | tig0008014:3686-3705 | Msa1345950:CDS | 25.0% |
| ! | TACCTTAACTTTCTTAGTAA+TGG | + | tig0008014:3691-3710 | None:intergenic | 25.0% |
| ! | ACATGAATAATGTACATATC+AGG | - | tig0008014:3713-3732 | Msa1345950:CDS | 25.0% |
| ACACATAACTTCTCTTTCTT+TGG | - | tig0008014:291-310 | Msa1345950:CDS | 30.0% | |
| CTTCTTCATCTTCATAATGT+TGG | + | tig0008014:344-363 | None:intergenic | 30.0% | |
| CAATATTAAAACAACATGGG+GGG | + | tig0008014:377-396 | None:intergenic | 30.0% | |
| AATTCTAAGCGTTTCATGTT+TGG | - | tig0008014:402-421 | Msa1345950:CDS | 30.0% | |
| CTTACAATATCAATGTGAGA+GGG | + | tig0008014:477-496 | None:intergenic | 30.0% | |
| ACTTACAATATCAATGTGAG+AGG | + | tig0008014:478-497 | None:intergenic | 30.0% | |
| ! | ATTTTACCATGTTTGTGAGA+AGG | - | tig0008014:568-587 | Msa1345950:CDS | 30.0% |
| TAGTACACTATTATGCATCA+TGG | - | tig0008014:594-613 | Msa1345950:CDS | 30.0% | |
| ! | TAAATTGCGGTTGTAGTTTT+TGG | - | tig0008014:620-639 | Msa1345950:CDS | 30.0% |
| GGTCCTATTAATCTTGAATT+CGG | - | tig0008014:742-761 | Msa1345950:intron | 30.0% | |
| ! | ACTTGTTAGTAGACAGAAAT+TGG | + | tig0008014:828-847 | None:intergenic | 30.0% |
| CAAACAAAAAGAAAAGGACA+AGG | + | tig0008014:874-893 | None:intergenic | 30.0% | |
| CAGAGGAAAAAGAAAATCAA+CGG | - | tig0008014:894-913 | Msa1345950:intron | 30.0% | |
| AGAGGAAAAAGAAAATCAAC+GGG | - | tig0008014:895-914 | Msa1345950:intron | 30.0% | |
| GAAAGAAGAACTTGAAAAAG+AGG | - | tig0008014:926-945 | Msa1345950:intron | 30.0% | |
| !! | GAACTTGAAAAAGAGGTATT+TGG | - | tig0008014:933-952 | Msa1345950:intron | 30.0% |
| TAATGATATATGCCATTGAG+GGG | + | tig0008014:1624-1643 | None:intergenic | 30.0% | |
| ! | TTTCATGAACCTTTTCTTCT+TGG | + | tig0008014:1813-1832 | None:intergenic | 30.0% |
| GGTTCATGAAATATTGGATA+TGG | - | tig0008014:1822-1841 | Msa1345950:intron | 30.0% | |
| ATGGTAAATAATAGGCCAAA+CGG | - | tig0008014:1841-1860 | Msa1345950:intron | 30.0% | |
| ACCTTAGAAGGAAGAAAATT+GGG | + | tig0008014:1883-1902 | None:intergenic | 30.0% | |
| TACCTTAGAAGGAAGAAAAT+TGG | + | tig0008014:1884-1903 | None:intergenic | 30.0% | |
| GAACATTGTATTACCTTAGA+AGG | + | tig0008014:1895-1914 | None:intergenic | 30.0% | |
| ACGCTATGAAAATTTAGCTA+GGG | + | tig0008014:1957-1976 | None:intergenic | 30.0% | |
| AACATTGAAACTTCATGTTG+GGG | + | tig0008014:2097-2116 | None:intergenic | 30.0% | |
| GAAACATTGAAACTTCATGT+TGG | + | tig0008014:2099-2118 | None:intergenic | 30.0% | |
| !! | AGTTTGAAGAGTGCTAATTT+GGG | + | tig0008014:2461-2480 | None:intergenic | 30.0% |
| ! | AAGTCAAAAATTTGGAACCA+AGG | - | tig0008014:2517-2536 | Msa1345950:intron | 30.0% |
| ! | AGTCAAAAATTTGGAACCAA+GGG | - | tig0008014:2518-2537 | Msa1345950:intron | 30.0% |
| TAGTAATGTTCATGAAAGGA+TGG | - | tig0008014:2615-2634 | Msa1345950:intron | 30.0% | |
| TTCAGTCTCAATGAAAAAAC+AGG | - | tig0008014:2703-2722 | Msa1345950:intron | 30.0% | |
| ! | GCAGAAAGAAAATAGTTTTC+AGG | - | tig0008014:2747-2766 | Msa1345950:intron | 30.0% |
| !! | GAAAGAAAATAGTTTTCAGG+AGG | - | tig0008014:2750-2769 | Msa1345950:intron | 30.0% |
| GAAAGAGTTACTAGGAAAAA+TGG | - | tig0008014:2787-2806 | Msa1345950:intron | 30.0% | |
| !! | AATTGTGCAATTTTGACCTT+TGG | - | tig0008014:2971-2990 | Msa1345950:CDS | 30.0% |
| AGGCTATAGACATTAGAAAT+TGG | + | tig0008014:3068-3087 | None:intergenic | 30.0% | |
| ! | AGTGATTGGTTGCAAATATT+AGG | + | tig0008014:3235-3254 | None:intergenic | 30.0% |
| !! | ATGCTTTCAGATAACTTGTT+TGG | + | tig0008014:3364-3383 | None:intergenic | 30.0% |
| TCTGAATCAAAGATACCATA+TGG | + | tig0008014:3571-3590 | None:intergenic | 30.0% | |
| AACATAACCAGATTCTTGTA+AGG | + | tig0008014:3619-3638 | None:intergenic | 30.0% | |
| ! | TATGTTCACTTCAAGTTCTA+TGG | - | tig0008014:3633-3652 | Msa1345950:CDS | 30.0% |
| ! | TTAGTAATGGAATAGACGAA+GGG | + | tig0008014:3678-3697 | None:intergenic | 30.0% |
| GATAAAAACCGTCTTTGTTG+TGG | + | tig0008014:198-217 | None:intergenic | 35.0% | |
| GTTATGTGTTGAAGTTGAGA+GGG | + | tig0008014:280-299 | None:intergenic | 35.0% | |
| AGTTATGTGTTGAAGTTGAG+AGG | + | tig0008014:281-300 | None:intergenic | 35.0% | |
| AGAAGATAATGACACAAGCT+TGG | + | tig0008014:319-338 | None:intergenic | 35.0% | |
| !! | TGCATCATGGTTCTAAATTG+CGG | - | tig0008014:607-626 | Msa1345950:CDS | 35.0% |
| GTTACAATGTGACACTATTG+CGG | - | tig0008014:642-661 | Msa1345950:intron | 35.0% | |
| TCAGATTATCCTTACCTTCA+CGG | + | tig0008014:768-787 | None:intergenic | 35.0% | |
| AACAATATTGCAATCCTCGA+TGG | + | tig0008014:803-822 | None:intergenic | 35.0% | |
| CCTCTGCAAACAAAAAGAAA+AGG | + | tig0008014:880-899 | None:intergenic | 35.0% | |
| !! | CCTTTTCTTTTTGTTTGCAG+AGG | - | tig0008014:877-896 | Msa1345950:intron | 35.0% |
| AGTTGGAGTGACATATATAG+AGG | - | tig0008014:1372-1391 | Msa1345950:CDS | 35.0% | |
| AGTGACATATATAGAGGAGA+GGG | - | tig0008014:1378-1397 | Msa1345950:CDS | 35.0% | |
| !! | TCAGTCATAGCTTTTTGGAA+AGG | + | tig0008014:1493-1512 | None:intergenic | 35.0% |
| ! | TGAACTCAGTCATAGCTTTT+TGG | + | tig0008014:1498-1517 | None:intergenic | 35.0% |
| ATAGATATAGCTGAACCGTT+TGG | + | tig0008014:1859-1878 | None:intergenic | 35.0% | |
| ! | TCCCAATTTTCTTCCTTCTA+AGG | - | tig0008014:1879-1898 | Msa1345950:intron | 35.0% |
| CACGCTATGAAAATTTAGCT+AGG | + | tig0008014:1958-1977 | None:intergenic | 35.0% | |
| AGTCTTCTTACATGCATGTA+TGG | + | tig0008014:2063-2082 | None:intergenic | 35.0% | |
| ACATTGAAACTTCATGTTGG+GGG | + | tig0008014:2096-2115 | None:intergenic | 35.0% | |
| TCAATGTTTCGTCATCACTT+AGG | - | tig0008014:2109-2128 | Msa1345950:intron | 35.0% | |
| TTGGTCCTTTAAACCATAAC+TGG | - | tig0008014:2135-2154 | Msa1345950:intron | 35.0% | |
| !! | CAGTTTGAAGAGTGCTAATT+TGG | + | tig0008014:2462-2481 | None:intergenic | 35.0% |
| CAAATTAGCACTCTTCAAAC+TGG | - | tig0008014:2460-2479 | Msa1345950:intron | 35.0% | |
| ACATGAACAAGAAATCACCA+AGG | - | tig0008014:2489-2508 | Msa1345950:intron | 35.0% | |
| GCAGTAGTAATGTTCATGAA+AGG | - | tig0008014:2611-2630 | Msa1345950:intron | 35.0% | |
| ! | AAGGATGGCATTTGAAACAA+AGG | - | tig0008014:2630-2649 | Msa1345950:intron | 35.0% |
| TCTAATGTCTATAGCCTATG+TGG | - | tig0008014:3071-3090 | Msa1345950:intron | 35.0% | |
| AATCAAGTCTATGTGGTACA+GGG | + | tig0008014:3142-3161 | None:intergenic | 35.0% | |
| AAATCAAGTCTATGTGGTAC+AGG | + | tig0008014:3143-3162 | None:intergenic | 35.0% | |
| GCTGAAAATAGTACAGTGAT+TGG | + | tig0008014:3249-3268 | None:intergenic | 35.0% | |
| ! | ACTGTACTATTTTCAGCTGA+GGG | - | tig0008014:3252-3271 | Msa1345950:intron | 35.0% |
| TCATTCTCTTCTGATAGAAG+TGG | + | tig0008014:3328-3347 | None:intergenic | 35.0% | |
| AACATCAAGAGCAATGGAAT+TGG | - | tig0008014:3423-3442 | Msa1345950:CDS | 35.0% | |
| GCAATGGAATTGGAAAAATC+AGG | - | tig0008014:3433-3452 | Msa1345950:CDS | 35.0% | |
| GAATGCAATGATCTTGAAAC+AGG | + | tig0008014:3460-3479 | None:intergenic | 35.0% | |
| ! | CAACATAAGACTTGGTTTCT+GGG | + | tig0008014:3524-3543 | None:intergenic | 35.0% |
| TTATGTTGCACAAGGAATCA+AGG | - | tig0008014:3536-3555 | Msa1345950:CDS | 35.0% | |
| TATTGGTCCTTACAAGAATC+TGG | - | tig0008014:3609-3628 | Msa1345950:CDS | 35.0% | |
| GAAGGGCTTGATATAAACTT+TGG | + | tig0008014:3661-3680 | None:intergenic | 35.0% | |
| ! | CTTAGTAATGGAATAGACGA+AGG | + | tig0008014:3679-3698 | None:intergenic | 35.0% |
| ACTCACAACCACAACAAAGA+CGG | - | tig0008014:187-206 | Msa1345950:CDS | 40.0% | |
| !! | TTTCATGTTTGGCTCTTCCA+TGG | - | tig0008014:413-432 | Msa1345950:CDS | 40.0% |
| ATCTAGTTGAGTGTGATCCA+TGG | + | tig0008014:433-452 | None:intergenic | 40.0% | |
| CTAGTACCTTCTCACAAACA+TGG | + | tig0008014:577-596 | None:intergenic | 40.0% | |
| GACACTATTGCGGTAAAATG+TGG | - | tig0008014:652-671 | Msa1345950:intron | 40.0% | |
| CTATTGCGGTAAAATGTGGT+TGG | - | tig0008014:656-675 | Msa1345950:intron | 40.0% | |
| CGGCCGAATTCAAGATTAAT+AGG | + | tig0008014:748-767 | None:intergenic | 40.0% | |
| GATCAAGAATTGTTCCATCG+AGG | - | tig0008014:786-805 | Msa1345950:intron | 40.0% | |
| GCAGAATAACTCACTTGAGT+TGG | - | tig0008014:1355-1374 | Msa1345950:CDS | 40.0% | |
| GAGTGACATATATAGAGGAG+AGG | - | tig0008014:1377-1396 | Msa1345950:CDS | 40.0% | |
| !!! | TGCTATTTTTGTCAAGGGAG+AGG | - | tig0008014:1573-1592 | Msa1345950:intron | 40.0% |
| AACAGGTCACTATGCTTCAA+AGG | - | tig0008014:1779-1798 | Msa1345950:intron | 40.0% | |
| CACTATGCTTCAAAGGTTGT+TGG | - | tig0008014:1786-1805 | Msa1345950:intron | 40.0% | |
| GTTGTTGGACCAAGAAGAAA+AGG | - | tig0008014:1801-1820 | Msa1345950:intron | 40.0% | |
| TTCGTCATCACTTAGGAGTT+TGG | - | tig0008014:2116-2135 | Msa1345950:intron | 40.0% | |
| !!! | GCTTTTTTGCCAGTTGAACT+AGG | + | tig0008014:2224-2243 | None:intergenic | 40.0% |
| TTGTGTGTGCGAGTTTGTAA+TGG | - | tig0008014:2297-2316 | Msa1345950:intron | 40.0% | |
| ATTGTTAGCAGAGCTAGTCA+TGG | - | tig0008014:2408-2427 | Msa1345950:intron | 40.0% | |
| CATTGCTCATCAAATTCCCT+TGG | + | tig0008014:2537-2556 | None:intergenic | 40.0% | |
| CTGCTTCTTTGAACAGAACT+AGG | + | tig0008014:2595-2614 | None:intergenic | 40.0% | |
| AAATTCGTCCTGCATACCTT+AGG | + | tig0008014:2859-2878 | None:intergenic | 40.0% | |
| TCGCGCAACTAAAATACCAA+AGG | + | tig0008014:2990-3009 | None:intergenic | 40.0% | |
| GTCTAAGTTGCGACTAACTT+CGG | + | tig0008014:3119-3138 | None:intergenic | 40.0% | |
| ATCAAGTCTATGTGGTACAG+GGG | + | tig0008014:3141-3160 | None:intergenic | 40.0% | |
| ! | CACTGTACTATTTTCAGCTG+AGG | - | tig0008014:3251-3270 | Msa1345950:intron | 40.0% |
| ACGTAATCTAGACATGCACT+TGG | - | tig0008014:3276-3295 | Msa1345950:intron | 40.0% | |
| CAGAAGAGAATGACCTAAAG+TGG | - | tig0008014:3335-3354 | Msa1345950:intron | 40.0% | |
| !! | ACTTGTTTGGTTGCCACTTT+AGG | + | tig0008014:3351-3370 | None:intergenic | 40.0% |
| ACTCAGAACATCAAGAGCAA+TGG | - | tig0008014:3417-3436 | Msa1345950:intron | 40.0% | |
| CTTTAAGCTCAAGAAGCTTC+CGG | - | tig0008014:3482-3501 | Msa1345950:CDS | 40.0% | |
| TTTAAGCTCAAGAAGCTTCC+GGG | - | tig0008014:3483-3502 | Msa1345950:CDS | 40.0% | |
| ! | GCAACATAAGACTTGGTTTC+TGG | + | tig0008014:3525-3544 | None:intergenic | 40.0% |
| ! | ACCAAGTCTTATGTTGCACA+AGG | - | tig0008014:3528-3547 | Msa1345950:CDS | 40.0% |
| TCCTTGTGCAACATAAGACT+TGG | + | tig0008014:3532-3551 | None:intergenic | 40.0% | |
| ATTCAGAAGAGTCCATTCCT+AGG | - | tig0008014:3584-3603 | Msa1345950:CDS | 40.0% | |
| TTCAGAAGAGTCCATTCCTA+GGG | - | tig0008014:3585-3604 | Msa1345950:CDS | 40.0% | |
| TTGTAAGGACCAATATCCCT+AGG | + | tig0008014:3604-3623 | None:intergenic | 40.0% | |
| ! | TTTGTTGTGGTTGTGAGTGC+TGG | + | tig0008014:185-204 | None:intergenic | 45.0% |
| ! | GAAGTTGAGAGGGACTTTTC+AGG | + | tig0008014:270-289 | None:intergenic | 45.0% |
| AATCTTGAATTCGGCCGTGA+AGG | - | tig0008014:751-770 | Msa1345950:intron | 45.0% | |
| ATGAAAACCATGCCCCTCAA+TGG | - | tig0008014:1609-1628 | Msa1345950:intron | 45.0% | |
| ATATATGCCATTGAGGGGCA+TGG | + | tig0008014:1619-1638 | None:intergenic | 45.0% | |
| TTGAAACTTCATGTTGGGGG+TGG | + | tig0008014:2093-2112 | None:intergenic | 45.0% | |
| TCCACAAGTCCTAGTTCAAC+TGG | - | tig0008014:2212-2231 | Msa1345950:intron | 45.0% | |
| ACTGGCAAAAAAGCCGATAC+TGG | - | tig0008014:2230-2249 | Msa1345950:intron | 45.0% | |
| GCAAAAAAGCCGATACTGGT+AGG | - | tig0008014:2234-2253 | Msa1345950:intron | 45.0% | |
| AAAAGCCGATACTGGTAGGT+TGG | - | tig0008014:2238-2257 | Msa1345950:intron | 45.0% | |
| GACTTCCAACCTACCAGTAT+CGG | + | tig0008014:2246-2265 | None:intergenic | 45.0% | |
| TACAAACTCGCACACACAAG+TGG | + | tig0008014:2296-2315 | None:intergenic | 45.0% | |
| !! | TGCATACCTTAGGTGATGGA+TGG | + | tig0008014:2849-2868 | None:intergenic | 45.0% |
| ATCCATCACCTAAGGTATGC+AGG | - | tig0008014:2848-2867 | Msa1345950:intron | 45.0% | |
| GCTAGAAACACGATCCACAT+AGG | + | tig0008014:3088-3107 | None:intergenic | 45.0% | |
| AAGTTGCGACTAACTTCGGT+CGG | + | tig0008014:3115-3134 | None:intergenic | 45.0% | |
| TGCACTTGGATCTTCCAACT+AGG | - | tig0008014:3290-3309 | Msa1345950:intron | 45.0% | |
| TCAAGGCAGCAAGATCCATA+TGG | - | tig0008014:3553-3572 | Msa1345950:CDS | 45.0% | |
| GAGTCCATTCCTAGGGATAT+TGG | - | tig0008014:3592-3611 | Msa1345950:CDS | 45.0% | |
| AGGACCAATATCCCTAGGAA+TGG | + | tig0008014:3599-3618 | None:intergenic | 45.0% | |
| !! | ATATATACATATATATATTA+TGG | - | tig0008014:1003-1022 | Msa1345950:intron | 5.0% |
| !! | TTGTGAGTGCTGGTAGGAGT+GGG | + | tig0008014:175-194 | None:intergenic | 50.0% |
| !! | TTGTGGTTGTGAGTGCTGGT+AGG | + | tig0008014:181-200 | None:intergenic | 50.0% |
| AAACAACATGGGGGGCTAAG+AGG | + | tig0008014:369-388 | None:intergenic | 50.0% | |
| GCGTTAACCCTCTGATTCTG+CGG | - | tig0008014:714-733 | Msa1345950:intron | 50.0% | |
| CGTTAACCCTCTGATTCTGC+GGG | - | tig0008014:715-734 | Msa1345950:intron | 50.0% | |
| TGAATTCGGCCGTGAAGGTA+AGG | - | tig0008014:756-775 | Msa1345950:intron | 50.0% | |
| GCCAGTTGAACTAGGACTTG+TGG | + | tig0008014:2216-2235 | None:intergenic | 50.0% | |
| ! | GGTAGGTTGGAAGTCATGAC+CGG | - | tig0008014:2251-2270 | Msa1345950:intron | 50.0% |
| ! | GTAGGTTGGAAGTCATGACC+GGG | - | tig0008014:2252-2271 | Msa1345950:intron | 50.0% |
| ! | TAGGTTGGAAGTCATGACCG+GGG | - | tig0008014:2253-2272 | Msa1345950:intron | 50.0% |
| AAACTCGCACACACAAGTGG+AGG | + | tig0008014:2293-2312 | None:intergenic | 50.0% | |
| GTCCTGCATACCTTAGGTGA+TGG | + | tig0008014:2853-2872 | None:intergenic | 50.0% | |
| GGATCAAGCAGTGACCTAGT+TGG | + | tig0008014:3307-3326 | None:intergenic | 50.0% | |
| !! | GTTGTGAGTGCTGGTAGGAG+TGG | + | tig0008014:176-195 | None:intergenic | 55.0% |
| ACCCTCTGATTCTGCGGGAA+AGG | - | tig0008014:720-739 | Msa1345950:intron | 55.0% | |
| CCCTTTCCCGCAGAATCAGA+GGG | + | tig0008014:724-743 | None:intergenic | 55.0% | |
| CCCTCTGATTCTGCGGGAAA+GGG | - | tig0008014:721-740 | Msa1345950:intron | 55.0% | |
| ACCCTTTCCCGCAGAATCAG+AGG | + | tig0008014:725-744 | None:intergenic | 55.0% | |
| !! | ACACACAAGTGGAGGTGCCA+GGG | + | tig0008014:2285-2304 | None:intergenic | 55.0% |
| !! | ACCTTAGGTGATGGATGGCG+CGG | + | tig0008014:2844-2863 | None:intergenic | 55.0% |
| AAGAAGCTTCCGGGTCGATC+TGG | - | tig0008014:3492-3511 | Msa1345950:CDS | 55.0% | |
| AGAAGCTTCCGGGTCGATCT+GGG | - | tig0008014:3493-3512 | Msa1345950:CDS | 55.0% | |
| CATGACCGGGGTTCAAACCC+TGG | - | tig0008014:2265-2284 | Msa1345950:intron | 60.0% | |
| AGGTGCCAGGGTTTGAACCC+CGG | + | tig0008014:2273-2292 | None:intergenic | 60.0% | |
| !! | CACACACAAGTGGAGGTGCC+AGG | + | tig0008014:2286-2305 | None:intergenic | 60.0% |
| !! | CCTTAGGTGATGGATGGCGC+GGG | + | tig0008014:2843-2862 | None:intergenic | 60.0% |
| CCCGCGCCATCCATCACCTA+AGG | - | tig0008014:2840-2859 | Msa1345950:intron | 65.0% | |
| GGGTCGATCCCAGATCGACC+CGG | + | tig0008014:3504-3523 | None:intergenic | 65.0% | |
| GGGTCACGCATAGGCGAGGG+AGG | + | tig0008014:2823-2842 | None:intergenic | 70.0% | |
| CGCGGGTCACGCATAGGCGA+GGG | + | tig0008014:2826-2845 | None:intergenic | 70.0% | |
| GGATGGCGCGGGTCACGCAT+AGG | + | tig0008014:2832-2851 | None:intergenic | 70.0% | |
| GCGCGGGTCACGCATAGGCG+AGG | + | tig0008014:2827-2846 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0008014 | gene | 168 | 3741 | 168 | ID=Msa1345950;Name=Msa1345950 |
| tig0008014 | mRNA | 168 | 3741 | 168 | ID=Msa1345950-mRNA-1;Parent=Msa1345950;Name=Msa1345950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.6|1|1|1|5|0|476 |
| tig0008014 | exon | 168 | 641 | 168 | ID=Msa1345950-mRNA-1:exon:5269;Parent=Msa1345950-mRNA-1 |
| tig0008014 | exon | 1048 | 1509 | 1048 | ID=Msa1345950-mRNA-1:exon:5268;Parent=Msa1345950-mRNA-1 |
| tig0008014 | exon | 2009 | 2125 | 2009 | ID=Msa1345950-mRNA-1:exon:5267;Parent=Msa1345950-mRNA-1 |
| tig0008014 | exon | 2962 | 3012 | 2962 | ID=Msa1345950-mRNA-1:exon:5266;Parent=Msa1345950-mRNA-1 |
| tig0008014 | exon | 3418 | 3741 | 3418 | ID=Msa1345950-mRNA-1:exon:5265;Parent=Msa1345950-mRNA-1 |
| tig0008014 | CDS | 3418 | 3741 | 3418 | ID=Msa1345950-mRNA-1:cds;Parent=Msa1345950-mRNA-1 |
| tig0008014 | CDS | 2962 | 3012 | 2962 | ID=Msa1345950-mRNA-1:cds;Parent=Msa1345950-mRNA-1 |
| tig0008014 | CDS | 2009 | 2125 | 2009 | ID=Msa1345950-mRNA-1:cds;Parent=Msa1345950-mRNA-1 |
| tig0008014 | CDS | 1048 | 1509 | 1048 | ID=Msa1345950-mRNA-1:cds;Parent=Msa1345950-mRNA-1 |
| tig0008014 | CDS | 168 | 641 | 168 | ID=Msa1345950-mRNA-1:cds;Parent=Msa1345950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
