Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546800 | KEH30016.1 | 97.974 | 691 | 14 | 0 | 1 | 691 | 1 | 691 | 0.0 | 1400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546800 | A0A072UKT1 | 97.974 | 691 | 14 | 0 | 1 | 691 | 1 | 691 | 0.0 | 1400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0546800 | 0.800560 | 1.360863e-48 | -8.615850e-47 |
| Msa0034210 | Msa0546800 | 0.820619 | 6.231587e-53 | -8.615850e-47 |
| Msa0071850 | Msa0546800 | 0.806762 | 7.028856e-50 | -8.615850e-47 |
| Msa0071860 | Msa0546800 | 0.816496 | 5.367708e-52 | -8.615850e-47 |
| Msa0074020 | Msa0546800 | 0.813008 | 3.181617e-51 | -8.615850e-47 |
| Msa0108880 | Msa0546800 | 0.820882 | 5.424309e-53 | -8.615850e-47 |
| Msa0128310 | Msa0546800 | 0.823145 | 1.621598e-53 | -8.615850e-47 |
| Msa0174440 | Msa0546800 | 0.816274 | 6.017285e-52 | -8.615850e-47 |
| Msa0193850 | Msa0546800 | 0.853232 | 2.738528e-61 | -8.615850e-47 |
| Msa0235710 | Msa0546800 | 0.836488 | 9.084780e-57 | -8.615850e-47 |
| Msa0392380 | Msa0546800 | 0.811480 | 6.855225e-51 | -8.615850e-47 |
| Msa0440320 | Msa0546800 | 0.823260 | 1.524042e-53 | -8.615850e-47 |
| Msa0243600 | Msa0546800 | 0.814208 | 1.731529e-51 | -8.615850e-47 |
| Msa0274440 | Msa0546800 | 0.824888 | 6.321959e-54 | -8.615850e-47 |
| Msa0282220 | Msa0546800 | 0.823833 | 1.119737e-53 | -8.615850e-47 |
| Msa0314170 | Msa0546800 | 0.873823 | 1.090934e-67 | -8.615850e-47 |
| Msa0487500 | Msa0546800 | 0.811755 | 5.972920e-51 | -8.615850e-47 |
| Msa0528570 | Msa0546800 | 0.804147 | 2.483444e-49 | -8.615850e-47 |
| Msa0546800 | Msa0557460 | 0.809043 | 2.299490e-50 | -8.615850e-47 |
| Msa0546800 | Msa0642950 | 0.803137 | 4.023471e-49 | -8.615850e-47 |
| Msa0546800 | Msa0691910 | 0.806083 | 9.771085e-50 | -8.615850e-47 |
| Msa0546800 | Msa0700460 | 0.800567 | 1.356643e-48 | -8.615850e-47 |
| Msa0546800 | Msa0738700 | 0.857202 | 1.916974e-62 | -8.615850e-47 |
| Msa0546800 | Msa0859290 | 0.831129 | 1.988033e-55 | -8.615850e-47 |
| Msa0546800 | Msa1037550 | 0.811041 | 8.535033e-51 | -8.615850e-47 |
| Msa0546800 | Msa1042160 | 0.800026 | 1.748073e-48 | -8.615850e-47 |
| Msa0546800 | Msa1042190 | 0.801146 | 1.033192e-48 | -8.615850e-47 |
| Msa0546800 | Msa1130430 | 0.806822 | 6.823909e-50 | -8.615850e-47 |
| Msa0546800 | Msa1222590 | 0.832697 | 8.152128e-56 | -8.615850e-47 |
| Msa0546800 | Msa1264570 | 0.842271 | 2.863137e-58 | -8.615850e-47 |
| Msa0546800 | Msa1327650 | 0.816546 | 5.229554e-52 | -8.615850e-47 |
| Msa0546800 | Msa1340700 | 0.829142 | 6.075046e-55 | -8.615850e-47 |
| Msa0546800 | Msa1345950 | 0.851079 | 1.121186e-60 | -8.615850e-47 |
| Msa0546800 | Msa1430750 | 0.827154 | 1.829805e-54 | -8.615850e-47 |
| Msa0546800 | Msa1436420 | 0.837608 | 4.700941e-57 | -8.615850e-47 |
| Msa0546800 | Msa1446110 | 0.812094 | 5.039373e-51 | -8.615850e-47 |
| Msa0546800 | Msa1452140 | 0.818512 | 1.885605e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546800 | MtrunA17_Chr4g0028651 | 97.974 | 691 | 14 | 0 | 1 | 691 | 5 | 695 | 0.0 | 1399 |
| Msa0546800 | MtrunA17_Chr5g0435281 | 43.099 | 355 | 187 | 7 | 340 | 691 | 169 | 511 | 1.33e-87 | 283 |
| Msa0546800 | MtrunA17_Chr3g0133631 | 30.560 | 589 | 335 | 15 | 108 | 690 | 49 | 569 | 3.46e-68 | 233 |
| Msa0546800 | MtrunA17_Chr8g0374741 | 33.782 | 595 | 340 | 17 | 117 | 689 | 33 | 595 | 1.75e-67 | 232 |
| Msa0546800 | MtrunA17_Chr5g0402501 | 37.609 | 343 | 164 | 9 | 350 | 689 | 249 | 544 | 4.36e-65 | 224 |
| Msa0546800 | MtrunA17_Chr1g0153951 | 31.826 | 597 | 326 | 18 | 112 | 690 | 13 | 546 | 4.01e-64 | 222 |
| Msa0546800 | MtrunA17_Chr8g0373901 | 30.857 | 350 | 203 | 9 | 351 | 689 | 299 | 620 | 4.50e-39 | 153 |
| Msa0546800 | MtrunA17_Chr5g0399331 | 28.926 | 363 | 210 | 11 | 338 | 690 | 252 | 576 | 5.37e-36 | 143 |
| Msa0546800 | MtrunA17_Chr5g0403231 | 30.899 | 356 | 206 | 9 | 349 | 690 | 290 | 619 | 8.10e-36 | 143 |
| Msa0546800 | MtrunA17_Chr4g0034351 | 27.171 | 357 | 223 | 11 | 343 | 690 | 285 | 613 | 9.98e-28 | 118 |
| Msa0546800 | MtrunA17_Chr3g0115381 | 29.648 | 199 | 127 | 6 | 462 | 655 | 544 | 734 | 5.30e-13 | 72.4 |
| Msa0546800 | MtrunA17_Chr8g0351061 | 29.605 | 152 | 98 | 2 | 461 | 610 | 408 | 552 | 2.03e-12 | 70.5 |
| Msa0546800 | MtrunA17_Chr1g0163291 | 27.273 | 198 | 121 | 6 | 461 | 649 | 386 | 569 | 9.77e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546800 | AT5G60720.1 | 51.593 | 659 | 228 | 15 | 101 | 691 | 56 | 691 | 0.0 | 582 |
| Msa0546800 | AT2G39690.2 | 42.857 | 350 | 179 | 6 | 343 | 691 | 89 | 418 | 4.75e-86 | 277 |
| Msa0546800 | AT2G39690.4 | 42.857 | 350 | 179 | 6 | 343 | 691 | 170 | 499 | 2.84e-85 | 277 |
| Msa0546800 | AT2G39690.5 | 42.857 | 350 | 179 | 6 | 343 | 691 | 196 | 525 | 4.00e-85 | 278 |
| Msa0546800 | AT2G39690.8 | 42.286 | 350 | 180 | 6 | 343 | 691 | 170 | 498 | 4.53e-83 | 271 |
| Msa0546800 | AT2G39690.1 | 42.286 | 350 | 180 | 6 | 343 | 691 | 196 | 524 | 5.34e-83 | 272 |
| Msa0546800 | AT5G42690.3 | 39.942 | 343 | 168 | 9 | 349 | 691 | 184 | 488 | 1.25e-66 | 228 |
| Msa0546800 | AT5G42690.5 | 39.942 | 343 | 168 | 9 | 349 | 691 | 209 | 513 | 3.18e-66 | 227 |
| Msa0546800 | AT5G42690.1 | 39.942 | 343 | 168 | 9 | 349 | 691 | 235 | 539 | 5.36e-66 | 227 |
| Msa0546800 | AT5G42690.2 | 39.942 | 343 | 168 | 9 | 349 | 691 | 236 | 540 | 5.65e-66 | 227 |
| Msa0546800 | AT5G42690.4 | 39.942 | 343 | 168 | 9 | 349 | 691 | 236 | 540 | 5.65e-66 | 227 |
| Msa0546800 | AT3G12540.2 | 38.395 | 349 | 184 | 10 | 350 | 691 | 181 | 505 | 2.77e-63 | 219 |
| Msa0546800 | AT3G12540.1 | 38.395 | 349 | 184 | 10 | 350 | 691 | 248 | 572 | 3.53e-63 | 220 |
| Msa0546800 | AT4G37080.2 | 31.648 | 613 | 321 | 16 | 117 | 689 | 54 | 608 | 7.23e-62 | 218 |
| Msa0546800 | AT4G37080.3 | 31.648 | 613 | 321 | 16 | 117 | 689 | 54 | 608 | 7.23e-62 | 218 |
| Msa0546800 | AT4G37080.1 | 31.648 | 613 | 321 | 16 | 117 | 689 | 41 | 595 | 8.54e-62 | 217 |
| Msa0546800 | AT2G39690.6 | 43.145 | 248 | 121 | 5 | 343 | 589 | 196 | 424 | 2.17e-54 | 193 |
| Msa0546800 | AT2G39690.7 | 42.339 | 248 | 122 | 5 | 343 | 589 | 196 | 423 | 2.23e-52 | 187 |
| Msa0546800 | AT5G47380.5 | 28.977 | 352 | 197 | 7 | 350 | 690 | 222 | 531 | 1.08e-40 | 157 |
| Msa0546800 | AT5G47380.4 | 28.409 | 352 | 199 | 8 | 350 | 690 | 278 | 587 | 1.63e-40 | 157 |
| Msa0546800 | AT2G39690.3 | 42.424 | 198 | 99 | 4 | 343 | 539 | 170 | 353 | 1.66e-40 | 152 |
| Msa0546800 | AT5G47380.1 | 28.409 | 352 | 199 | 8 | 350 | 690 | 278 | 587 | 2.98e-40 | 157 |
| Msa0546800 | AT4G37080.4 | 30.019 | 513 | 264 | 14 | 117 | 589 | 54 | 511 | 8.95e-36 | 142 |
| Msa0546800 | AT1G16750.1 | 30.788 | 419 | 226 | 15 | 318 | 689 | 126 | 527 | 5.50e-35 | 140 |
| Msa0546800 | AT5G66600.7 | 30.857 | 350 | 209 | 10 | 350 | 689 | 228 | 554 | 1.42e-33 | 136 |
| Msa0546800 | AT5G66600.14 | 31.143 | 350 | 208 | 11 | 350 | 689 | 282 | 608 | 1.45e-33 | 137 |
| Msa0546800 | AT5G66600.1 | 31.143 | 350 | 208 | 11 | 350 | 689 | 282 | 608 | 1.45e-33 | 137 |
| Msa0546800 | AT5G66600.4 | 31.143 | 350 | 208 | 11 | 350 | 689 | 282 | 608 | 1.45e-33 | 137 |
| Msa0546800 | AT5G66600.9 | 31.143 | 350 | 208 | 11 | 350 | 689 | 282 | 608 | 1.45e-33 | 137 |
| Msa0546800 | AT5G66600.3 | 31.143 | 350 | 208 | 11 | 350 | 689 | 282 | 608 | 1.45e-33 | 137 |
| Msa0546800 | AT5G66600.2 | 30.857 | 350 | 209 | 10 | 350 | 689 | 262 | 588 | 1.68e-33 | 136 |
| Msa0546800 | AT2G23700.1 | 31.224 | 237 | 142 | 4 | 462 | 690 | 479 | 702 | 3.03e-33 | 136 |
| Msa0546800 | AT1G76620.1 | 27.401 | 354 | 215 | 10 | 350 | 690 | 193 | 517 | 2.57e-28 | 120 |
| Msa0546800 | AT1G43020.1 | 33.505 | 194 | 122 | 4 | 460 | 649 | 211 | 401 | 1.03e-24 | 108 |
| Msa0546800 | AT3G18900.4 | 28.736 | 261 | 168 | 6 | 435 | 689 | 282 | 530 | 4.92e-24 | 107 |
| Msa0546800 | AT3G18900.5 | 28.736 | 261 | 168 | 6 | 435 | 689 | 277 | 525 | 5.91e-24 | 106 |
| Msa0546800 | AT3G18900.6 | 28.352 | 261 | 169 | 5 | 435 | 689 | 201 | 449 | 8.31e-24 | 105 |
| Msa0546800 | AT3G18900.3 | 28.352 | 261 | 169 | 5 | 435 | 689 | 201 | 449 | 8.31e-24 | 105 |
| Msa0546800 | AT5G47380.2 | 28.685 | 251 | 128 | 7 | 350 | 589 | 278 | 488 | 1.18e-22 | 102 |
| Msa0546800 | AT5G47380.3 | 28.906 | 256 | 130 | 8 | 350 | 594 | 278 | 492 | 1.78e-22 | 102 |
| Msa0546800 | AT5G66600.12 | 31.600 | 250 | 144 | 7 | 350 | 589 | 282 | 514 | 4.19e-22 | 100 |
| Msa0546800 | AT5G66600.11 | 31.600 | 250 | 144 | 7 | 350 | 589 | 282 | 514 | 4.19e-22 | 100 |
| Msa0546800 | AT5G66600.6 | 31.600 | 250 | 144 | 7 | 350 | 589 | 282 | 514 | 4.19e-22 | 100 |
| Msa0546800 | AT5G66600.13 | 31.600 | 250 | 144 | 7 | 350 | 589 | 282 | 514 | 4.19e-22 | 100 |
| Msa0546800 | AT1G21060.1 | 24.355 | 349 | 211 | 8 | 350 | 689 | 199 | 503 | 5.13e-22 | 100 |
| Msa0546800 | AT1G21060.2 | 24.355 | 349 | 211 | 8 | 350 | 689 | 187 | 491 | 5.50e-22 | 100 |
| Msa0546800 | AT1G16750.2 | 33.333 | 261 | 125 | 11 | 318 | 539 | 126 | 376 | 3.50e-20 | 94.0 |
| Msa0546800 | AT5G66600.15 | 33.508 | 191 | 115 | 5 | 350 | 538 | 228 | 408 | 2.80e-18 | 88.6 |
| Msa0546800 | AT5G66600.10 | 34.555 | 191 | 113 | 5 | 350 | 538 | 282 | 462 | 2.99e-18 | 89.0 |
| Msa0546800 | AT5G66600.8 | 34.555 | 191 | 113 | 5 | 350 | 538 | 282 | 462 | 2.99e-18 | 89.0 |
| Msa0546800 | AT5G66600.5 | 34.555 | 191 | 113 | 5 | 350 | 538 | 282 | 462 | 2.99e-18 | 89.0 |
| Msa0546800 | AT1G76620.2 | 28.854 | 253 | 145 | 8 | 350 | 589 | 193 | 423 | 1.54e-16 | 83.2 |
| Msa0546800 | AT3G18900.1 | 32.298 | 161 | 97 | 4 | 435 | 589 | 282 | 436 | 3.46e-16 | 82.4 |
| Msa0546800 | AT1G43020.3 | 36.364 | 132 | 77 | 4 | 460 | 587 | 211 | 339 | 1.71e-15 | 79.0 |
| Msa0546800 | AT3G18900.2 | 36.449 | 107 | 66 | 1 | 435 | 541 | 282 | 386 | 2.76e-14 | 75.9 |
| Msa0546800 | AT3G11920.1 | 31.098 | 164 | 102 | 4 | 461 | 620 | 413 | 569 | 1.60e-13 | 74.3 |
| Msa0546800 | AT4G08550.2 | 29.412 | 153 | 102 | 2 | 462 | 614 | 478 | 624 | 7.12e-12 | 69.3 |
| Msa0546800 | AT4G08550.1 | 29.412 | 153 | 102 | 2 | 462 | 614 | 424 | 570 | 8.71e-12 | 68.9 |
Find 145 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACATAAGACTTGGTTTC+TGG | 0.166945 | 4_1:+39162294 | None:intergenic |
| CAGTTTGAAGAGTGCTAATT+TGG | 0.181753 | 4_1:+39163357 | None:intergenic |
| ATCAACAGAAATTAGCATTT+TGG | 0.183836 | 4_1:-39161804 | Msa0546800:CDS |
| ACACATAACTTCTCTTTCTT+TGG | 0.210882 | 4_1:-39165413 | Msa0546800:CDS |
| TCCACCTCAGAAAAGTTAAT+TGG | 0.228419 | 4_1:-39161609 | Msa0546800:CDS |
| TCAGTTGTACGTGAACTTTA+TGG | 0.245870 | 4_1:-39160830 | Msa0546800:CDS |
| TACCTTAGAAGGAAGAAAAT+TGG | 0.249973 | 4_1:+39163934 | None:intergenic |
| CAAAATCAAGCATGTTTCTT+AGG | 0.251643 | 4_1:+39159190 | None:intergenic |
| ACTTGTTTGGTTGCCACTTT+AGG | 0.257192 | 4_1:+39162468 | None:intergenic |
| TATGTTCACTTCAAGTTCTA+TGG | 0.258096 | 4_1:-39162183 | Msa0546800:CDS |
| AATCAATGGTTGAATGCTTT+AGG | 0.263766 | 4_1:-39159101 | Msa0546800:CDS |
| AATTCTAAGCGTTTCATGTT+TGG | 0.267227 | 4_1:-39165302 | Msa0546800:CDS |
| CTTTAAGCTCAAGAAGCTTC+CGG | 0.292568 | 4_1:-39162334 | Msa0546800:CDS |
| ATTCTAAGCGTTTCATGTTT+GGG | 0.299941 | 4_1:-39165301 | Msa0546800:CDS |
| TTTCTTTGTTATTAAACTTA+AGG | 0.303374 | 4_1:-39158980 | Msa0546800:three_prime_UTR |
| ATCAATGGTTGAATGCTTTA+GGG | 0.312421 | 4_1:-39159100 | Msa0546800:CDS |
| ATTAGACCGGCTATAATATA+TGG | 0.312631 | 4_1:+39158901 | None:intergenic |
| GGTTCATGAAATATTGGATA+TGG | 0.316220 | 4_1:-39163993 | Msa0546800:CDS |
| TTATAGGGATTCATTCAATA+TGG | 0.316382 | 4_1:-39161639 | Msa0546800:intron |
| TATTGGATATGGTAAATAAT+AGG | 0.316666 | 4_1:-39163982 | Msa0546800:CDS |
| CAGTTGTACGTGAACTTTAT+GGG | 0.329243 | 4_1:-39160829 | Msa0546800:CDS |
| AGAAAAGGTTCATGAAATAT+TGG | 0.331517 | 4_1:-39163999 | Msa0546800:CDS |
| AAGAAGCTTCCGGGTCGATC+TGG | 0.336608 | 4_1:-39162324 | Msa0546800:CDS |
| CTAATTTCTGTTGATTTGTA+AGG | 0.339731 | 4_1:+39161812 | None:intergenic |
| TGCAACCAGTTACCTACTTC+AGG | 0.348159 | 4_1:-39159135 | Msa0546800:CDS |
| CTATCTTCAAGCTTCAATTC+TGG | 0.350213 | 4_1:-39159250 | Msa0546800:CDS |
| GAACATTGTATTACCTTAGA+AGG | 0.364713 | 4_1:+39163923 | None:intergenic |
| TTTAAGCTCAAGAAGCTTCC+GGG | 0.364939 | 4_1:-39162333 | Msa0546800:CDS |
| AACATCAAGAGCAATGGAAT+TGG | 0.365837 | 4_1:-39162393 | Msa0546800:CDS |
| CTGCTTCTTTGAACAGAACT+AGG | 0.368104 | 4_1:+39163224 | None:intergenic |
| TGAAAATTTGTTGATGAAGT+TGG | 0.375911 | 4_1:+39165471 | None:intergenic |
| TACCTACTTCAGGGACTCTA+AGG | 0.378077 | 4_1:-39159125 | Msa0546800:CDS |
| TTCCATTACTAAGGAAGTTA+AGG | 0.379857 | 4_1:-39162130 | Msa0546800:intron |
| TATTGGTCCTTACAAGAATC+TGG | 0.381010 | 4_1:-39162207 | Msa0546800:CDS |
| CAAATTAGCACTCTTCAAAC+TGG | 0.386190 | 4_1:-39163356 | Msa0546800:CDS |
| ATGCTTTCAGATAACTTGTT+TGG | 0.391339 | 4_1:+39162455 | None:intergenic |
| CTTCTTCATCTTCATAATGT+TGG | 0.403192 | 4_1:+39165363 | None:intergenic |
| ACTTTATGGGCTTGAATTTG+TGG | 0.408759 | 4_1:-39160816 | Msa0546800:CDS |
| ATATTGAAATTCATAGTCAT+AGG | 0.413947 | 4_1:+39159032 | None:intergenic |
| ACCTTAGAAGGAAGAAAATT+GGG | 0.416248 | 4_1:+39163935 | None:intergenic |
| GAATGCAATGATCTTGAAAC+AGG | 0.417102 | 4_1:+39162359 | None:intergenic |
| GAGTCCATTCCTAGGGATAT+TGG | 0.417480 | 4_1:-39162224 | Msa0546800:CDS |
| CAACATAAGACTTGGTTTCT+GGG | 0.418995 | 4_1:+39162295 | None:intergenic |
| TTTCATAAGTAAAGCTATCA+AGG | 0.422572 | 4_1:-39163156 | Msa0546800:CDS |
| CAGAGAGCAAATGTGACATT+TGG | 0.422686 | 4_1:+39160791 | None:intergenic |
| TACCTTAACTTCCTTAGTAA+TGG | 0.431693 | 4_1:+39162128 | None:intergenic |
| GAAGGGCTTGATATAAACTT+TGG | 0.435869 | 4_1:+39162158 | None:intergenic |
| ATGTTTCTTAGGAGAAGTTC+TGG | 0.438412 | 4_1:+39159201 | None:intergenic |
| TCTGAATCAAAGATACCATA+TGG | 0.439160 | 4_1:+39162248 | None:intergenic |
| GAGTCCCTGAAGTAGGTAAC+TGG | 0.441166 | 4_1:+39159130 | None:intergenic |
| AGTTTGAAGAGTGCTAATTT+GGG | 0.447313 | 4_1:+39163358 | None:intergenic |
| CACTATGCTTCAAAGGTTGT+TGG | 0.447968 | 4_1:-39164029 | Msa0546800:CDS |
| CTTCGTCTATTCCATTACTA+AGG | 0.456267 | 4_1:-39162139 | Msa0546800:CDS |
| TATGTTGCCTCCTATGTTGA+GGG | 0.458305 | 4_1:+39161044 | None:intergenic |
| GTTGTTGGACCAAGAAGAAA+AGG | 0.462739 | 4_1:-39164014 | Msa0546800:CDS |
| TTATGTTGCCTCCTATGTTG+AGG | 0.466014 | 4_1:+39161043 | None:intergenic |
| ATACAAAATATGTATATAGA+AGG | 0.466559 | 4_1:-39158952 | Msa0546800:three_prime_UTR |
| TTTGTTGTGGTTGTGAGTGC+TGG | 0.467108 | 4_1:+39165522 | None:intergenic |
| TTTCATGTTTGGGTCTTCCA+TGG | 0.467537 | 4_1:-39165291 | Msa0546800:CDS |
| ATTCAGAAGAGTCCATTCCT+AGG | 0.471954 | 4_1:-39162232 | Msa0546800:CDS |
| CTTCAGACAGTTGATTTGAA+AGG | 0.476543 | 4_1:-39161835 | Msa0546800:CDS |
| CATGCTTTAGGCACAAAGGA+AGG | 0.478093 | 4_1:-39160873 | Msa0546800:intron |
| AGTTATGTGTTGAAGTTGAG+AGG | 0.478235 | 4_1:+39165426 | None:intergenic |
| CCCCTTCCATATATTATAGC+CGG | 0.482301 | 4_1:-39158907 | Msa0546800:three_prime_UTR |
| CATTGCTCATCAAATTCCCT+TGG | 0.485674 | 4_1:+39163282 | None:intergenic |
| CAGAAGAGAATGACCTAAAG+TGG | 0.486770 | 4_1:-39162481 | Msa0546800:CDS |
| AGAAGCTTCCGGGTCGATCT+GGG | 0.491267 | 4_1:-39162323 | Msa0546800:CDS |
| AATTTCATGAAAGAGTTACT+AGG | 0.496129 | 4_1:-39163037 | Msa0546800:CDS |
| TTCTGGCTACTAGCAACAAA+AGG | 0.498821 | 4_1:-39159233 | Msa0546800:CDS |
| TGCTTTAGGCACAAAGGAAG+GGG | 0.499304 | 4_1:-39160871 | Msa0546800:intron |
| ATAGATATAGCTGAACCGTT+TGG | 0.512371 | 4_1:+39163959 | None:intergenic |
| TTGTGGTTGTGAGTGCTGGT+AGG | 0.515279 | 4_1:+39165526 | None:intergenic |
| TCCTTGTGCAACATAAGACT+TGG | 0.518516 | 4_1:+39162287 | None:intergenic |
| GTTGAATGCTTTAGGGGTCA+TGG | 0.519652 | 4_1:-39159093 | Msa0546800:CDS |
| ACCTTAGGTGATGGATGGCG+CGG | 0.520139 | 4_1:+39162975 | None:intergenic |
| GCTACTAGCAACAAAAGGAT+AGG | 0.522154 | 4_1:-39159228 | Msa0546800:CDS |
| TATTGATTCACTAGTGGAAT+GGG | 0.525242 | 4_1:-39159160 | Msa0546800:CDS |
| AGTTTGACTATCAATTAGAC+CGG | 0.530318 | 4_1:+39158888 | None:intergenic |
| ATGGTAAATAATAGGCCAAA+CGG | 0.530946 | 4_1:-39163974 | Msa0546800:CDS |
| AACATAACCAGATTCTTGTA+AGG | 0.532047 | 4_1:+39162200 | None:intergenic |
| ATGCTTTAGGCACAAAGGAA+GGG | 0.533191 | 4_1:-39160872 | Msa0546800:intron |
| TTATGTTGCACAAGGAATCA+AGG | 0.533454 | 4_1:-39162280 | Msa0546800:CDS |
| TCAAGGCAGCAAGATCCATA+TGG | 0.535834 | 4_1:-39162263 | Msa0546800:CDS |
| AGATGCTTCTAATATGAAAG+AGG | 0.540918 | 4_1:-39160980 | Msa0546800:intron |
| AACAGGTCACTATGCTTCAA+AGG | 0.544746 | 4_1:-39164036 | Msa0546800:intron |
| GTCACATTTGCTCTCTGTAG+TGG | 0.549863 | 4_1:-39160785 | Msa0546800:CDS |
| TTCCTTAGAGTCCCTGAAGT+AGG | 0.552540 | 4_1:+39159123 | None:intergenic |
| CGCGGGTCACGCATAGGCGA+GGG | 0.553869 | 4_1:+39162993 | None:intergenic |
| GTTATGTGTTGAAGTTGAGA+GGG | 0.554364 | 4_1:+39165427 | None:intergenic |
| GCAACCAGTTACCTACTTCA+GGG | 0.554937 | 4_1:-39159134 | Msa0546800:CDS |
| GACCGGCTATAATATATGGA+AGG | 0.556114 | 4_1:+39158905 | None:intergenic |
| AAACAACATGGAGGGCTAAG+AGG | 0.557593 | 4_1:+39165338 | None:intergenic |
| ACCGGCTATAATATATGGAA+GGG | 0.559693 | 4_1:+39158906 | None:intergenic |
| CTACTAGCAACAAAAGGATA+GGG | 0.561385 | 4_1:-39159227 | Msa0546800:CDS |
| AGGGACTCTAAGGAAATCAA+TGG | 0.562592 | 4_1:-39159115 | Msa0546800:CDS |
| CCCGCGCCATCCATCACCTA+AGG | 0.565330 | 4_1:-39162976 | Msa0546800:intron |
| GTCCTGCATACCTTAGGTGA+TGG | 0.566537 | 4_1:+39162966 | None:intergenic |
| GGATCAAGCAGTGACCTAGT+TGG | 0.569135 | 4_1:+39162512 | None:intergenic |
| TAACGGGCTGCAAAAGAAAG+AGG | 0.569855 | 4_1:-39164838 | Msa0546800:CDS |
| TTCAGAAGAGTCCATTCCTA+GGG | 0.570102 | 4_1:-39162231 | Msa0546800:CDS |
| TGCATACCTTAGGTGATGGA+TGG | 0.572769 | 4_1:+39162970 | None:intergenic |
| AGGACCAATATCCCTAGGAA+TGG | 0.574284 | 4_1:+39162220 | None:intergenic |
| GTTGTGAGTGCTGGTAGGAG+TGG | 0.575062 | 4_1:+39165531 | None:intergenic |
| TCATTCTCTTCTGATAGAAG+TGG | 0.575222 | 4_1:+39162491 | None:intergenic |
| GCAGTAGTAATGTTCATGAA+AGG | 0.578237 | 4_1:-39163205 | Msa0546800:CDS |
| GGATGGCGCGGGTCACGCAT+AGG | 0.579444 | 4_1:+39162987 | None:intergenic |
| TAGTAATGTTCATGAAAGGA+TGG | 0.582716 | 4_1:-39163201 | Msa0546800:CDS |
| AGAAGATGATGACACAAGCT+TGG | 0.584470 | 4_1:+39165388 | None:intergenic |
| TATTGAAATTCATAGTCATA+GGG | 0.588176 | 4_1:+39159033 | None:intergenic |
| GCGCGGGTCACGCATAGGCG+AGG | 0.588761 | 4_1:+39162992 | None:intergenic |
| ATCTAGTTGAGTATGATCCA+TGG | 0.591663 | 4_1:+39165274 | None:intergenic |
| GTGTAGGCAACCCTCAACAT+AGG | 0.591704 | 4_1:-39161054 | Msa0546800:intron |
| TTGTAAGGACCAATATCCCT+AGG | 0.593631 | 4_1:+39162215 | None:intergenic |
| CTTAGTAATGGAATAGACGA+AGG | 0.594047 | 4_1:+39162140 | None:intergenic |
| ACTCAGAACATCAAGAGCAA+TGG | 0.595023 | 4_1:-39162399 | Msa0546800:CDS |
| TTGTGAGTGCTGGTAGGAGT+GGG | 0.597509 | 4_1:+39165532 | None:intergenic |
| AAGGATGGCATTTGAAACAA+AGG | 0.605174 | 4_1:-39163186 | Msa0546800:CDS |
| TTCATAAGTAAAGCTATCAA+GGG | 0.605273 | 4_1:-39163155 | Msa0546800:CDS |
| ATATTGATTCACTAGTGGAA+TGG | 0.609296 | 4_1:-39159161 | Msa0546800:CDS |
| CCTTAGGTGATGGATGGCGC+GGG | 0.611524 | 4_1:+39162976 | None:intergenic |
| CCGGCTATAATATATGGAAG+GGG | 0.617142 | 4_1:+39158907 | None:intergenic |
| TCAATGGTTGAATGCTTTAG+GGG | 0.617208 | 4_1:-39159099 | Msa0546800:CDS |
| TAGGCAACCCTCAACATAGG+AGG | 0.618243 | 4_1:-39161051 | Msa0546800:CDS |
| CAATGTTAAAACAACATGGA+GGG | 0.621628 | 4_1:+39165330 | None:intergenic |
| TTAGTAATGGAATAGACGAA+GGG | 0.623130 | 4_1:+39162141 | None:intergenic |
| GGGTCATGGTGGTAATGTCA+AGG | 0.624183 | 4_1:-39159079 | Msa0546800:CDS |
| ACTTACAATATCAATGTGAG+AGG | 0.626776 | 4_1:+39165229 | None:intergenic |
| GGGTCACGCATAGGCGAGGG+AGG | 0.627228 | 4_1:+39162996 | None:intergenic |
| ATTGTTAGCAGAGCTAGTCA+TGG | 0.628790 | 4_1:-39163408 | Msa0546800:CDS |
| GGGTCGATCCCAGATCGACC+CGG | 0.632482 | 4_1:+39162315 | None:intergenic |
| ACTCACAACCACAACAAAGA+CGG | 0.640564 | 4_1:-39165517 | Msa0546800:CDS |
| ACCAAGTCTTATGTTGCACA+AGG | 0.641062 | 4_1:-39162288 | Msa0546800:CDS |
| TGCACTTGGATCTTCCAACT+AGG | 0.652722 | 4_1:-39162526 | Msa0546800:CDS |
| GTGAGGATATACACAGGCGA+TGG | 0.656690 | 4_1:-39159306 | Msa0546800:CDS |
| TGTGGATATTGATTCACTAG+TGG | 0.661093 | 4_1:-39159166 | Msa0546800:CDS |
| ACGTAATCTAGACATGCACT+TGG | 0.661998 | 4_1:-39162540 | Msa0546800:CDS |
| CTTACAATATCAATGTGAGA+GGG | 0.665631 | 4_1:+39165230 | None:intergenic |
| GTTAATTGGATTGATTAACA+AGG | 0.665903 | 4_1:-39161595 | Msa0546800:intron |
| GAAACAATGTTAAAACAACA+TGG | 0.666195 | 4_1:+39165326 | None:intergenic |
| ATGGCATGCTTTAGGCACAA+AGG | 0.670868 | 4_1:-39160877 | Msa0546800:intron |
| GCTTTAGGCACAAAGGAAGG+GGG | 0.676472 | 4_1:-39160870 | Msa0546800:intron |
| ACAATGTTAAAACAACATGG+AGG | 0.677704 | 4_1:+39165329 | None:intergenic |
| GAATGCTTTAGGGGTCATGG+TGG | 0.682567 | 4_1:-39159090 | Msa0546800:CDS |
| ATTCAGGTGAGGATATACAC+AGG | 0.732856 | 4_1:-39159312 | Msa0546800:intron |
| ACATGAACAAGAAATCACCA+AGG | 0.745029 | 4_1:-39163327 | Msa0546800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATATATATTTTTTAT+TGG | - | chr4_1:39159576-39159595 | Msa0546800:intron | 0.0% |
| !! | TATTATTCCTATAAATATAT+AGG | - | chr4_1:39160203-39160222 | Msa0546800:intron | 10.0% |
| !! | ATTATTCCTATAAATATATA+GGG | - | chr4_1:39160204-39160223 | Msa0546800:intron | 10.0% |
| !!! | TTAATGTATATTTTTGTTAT+AGG | - | chr4_1:39162702-39162721 | Msa0546800:intron | 10.0% |
| !!! | TAATGTATATTTTTGTTATA+GGG | - | chr4_1:39162703-39162722 | Msa0546800:intron | 10.0% |
| !!! | TTACTATAAATTATTTTAAG+AGG | - | chr4_1:39163042-39163061 | Msa0546800:CDS | 10.0% |
| !!! | TACTATAAATTATTTTAAGA+GGG | - | chr4_1:39163043-39163062 | Msa0546800:CDS | 10.0% |
| !!! | TACATTTAATTTTCTTTATT+CGG | - | chr4_1:39163106-39163125 | Msa0546800:CDS | 10.0% |
| !! | ATTAAATATGTAAAACAATA+TGG | - | chr4_1:39163461-39163480 | Msa0546800:intron | 10.0% |
| !! | TTGTTACATATTAAATTTAT+TGG | - | chr4_1:39164739-39164758 | Msa0546800:intron | 10.0% |
| !! | AAAAAATATGAAATTATTAG+TGG | - | chr4_1:39164780-39164799 | Msa0546800:intron | 10.0% |
| !! | TTTATAGTAATGTATTAAGA+TGG | - | chr4_1:39159990-39160009 | Msa0546800:intron | 15.0% |
| !! | TTATTCCTATAAATATATAG+GGG | - | chr4_1:39160205-39160224 | Msa0546800:intron | 15.0% |
| !! | GTAAAATACAATTATAAAAG+TGG | - | chr4_1:39160699-39160718 | Msa0546800:intron | 15.0% |
| !!! | TCAAGCAATTTTTTTTTTAT+TGG | + | chr4_1:39160885-39160904 | None:intergenic | 15.0% |
| !! | ATTATGATTTATGATATCTA+GGG | + | chr4_1:39161495-39161514 | None:intergenic | 15.0% |
| !! | AATTATGATTTATGATATCT+AGG | + | chr4_1:39161496-39161515 | None:intergenic | 15.0% |
| !! | AAGAAACATATATAATAAGA+TGG | + | chr4_1:39161572-39161591 | None:intergenic | 15.0% |
| !!! | ATAGACTTGATTTTAAAAAT+TGG | - | chr4_1:39161691-39161710 | Msa0546800:intron | 15.0% |
| !! | ATTGTAACAAAACTAATATT+TGG | - | chr4_1:39161748-39161767 | Msa0546800:intron | 15.0% |
| !! | TTGTAACAAAACTAATATTT+GGG | - | chr4_1:39161749-39161768 | Msa0546800:intron | 15.0% |
| !! | ATTTCAATATTATAACCAAA+TGG | - | chr4_1:39162643-39162662 | Msa0546800:intron | 15.0% |
| !!! | ATATCAAGACAATATTTTTA+AGG | + | chr4_1:39162790-39162809 | None:intergenic | 15.0% |
| !! | TACAAAAAATAACAAGATTA+TGG | + | chr4_1:39163441-39163460 | None:intergenic | 15.0% |
| !! | TTGAAAAAAGTAAAAAATCT+CGG | + | chr4_1:39164276-39164295 | None:intergenic | 15.0% |
| !! | ATATTAGAATAATTGACAAA+GGG | + | chr4_1:39164407-39164426 | None:intergenic | 15.0% |
| !! | AATATTAGAATAATTGACAA+AGG | + | chr4_1:39164408-39164427 | None:intergenic | 15.0% |
| !! | ACTAATTAATGCTATATATT+TGG | - | chr4_1:39164438-39164457 | Msa0546800:intron | 15.0% |
| !!! | TTAATTTGAAGCTAATATTT+TGG | - | chr4_1:39164929-39164948 | Msa0546800:intron | 15.0% |
| !!! | TTTCTTTGTTATTAAACTTA+AGG | - | chr4_1:39165377-39165396 | Msa0546800:CDS | 15.0% |
| !! | ATACAAAATATGTATATAGA+AGG | - | chr4_1:39165405-39165424 | Msa0546800:CDS | 15.0% |
| !! | ATATATATAAATACGTAGCT+TGG | + | chr4_1:39159569-39159588 | None:intergenic | 20.0% |
| !!! | TAATAAACCTTTTGATTTGA+TGG | + | chr4_1:39159651-39159670 | None:intergenic | 20.0% |
| !! | TAAAAACTTATACGTTCATT+TGG | + | chr4_1:39159738-39159757 | None:intergenic | 20.0% |
| !! | TTCAATAATTTAACTGTTGA+TGG | + | chr4_1:39159834-39159853 | None:intergenic | 20.0% |
| !!! | TTAACAAGTCATATAGTTTT+CGG | + | chr4_1:39160294-39160313 | None:intergenic | 20.0% |
| !! | TATTGGATATGGTAAATAAT+AGG | - | chr4_1:39160375-39160394 | Msa0546800:intron | 20.0% |
| !! | GTAAAGCAAAAATATATATG+AGG | + | chr4_1:39160461-39160480 | None:intergenic | 20.0% |
| !! | CAAGGTAATATAATGTTATA+GGG | - | chr4_1:39160548-39160567 | Msa0546800:intron | 20.0% |
| !! | AATATAATGTTATAGGGATA+TGG | - | chr4_1:39160554-39160573 | Msa0546800:intron | 20.0% |
| !! | ATATAATGTTATAGGGATAT+GGG | - | chr4_1:39160555-39160574 | Msa0546800:intron | 20.0% |
| !!! | TAATTGTATTTTACCAGTTA+TGG | + | chr4_1:39160693-39160712 | None:intergenic | 20.0% |
| !!! | TTTTTAAAATCAAGTCTATG+TGG | + | chr4_1:39161690-39161709 | None:intergenic | 20.0% |
| !!! | ACATAATAGTTTTTCAATTG+AGG | + | chr4_1:39162349-39162368 | None:intergenic | 20.0% |
| !! | ATTGAAAAACTATTATGTAG+CGG | - | chr4_1:39162351-39162370 | Msa0546800:CDS | 20.0% |
| !!! | TGTATGAAGGTTTTAAATAA+AGG | + | chr4_1:39162396-39162415 | None:intergenic | 20.0% |
| !! | TAGAATTATACTATGTATGA+AGG | + | chr4_1:39162409-39162428 | None:intergenic | 20.0% |
| !! | GATGAATAAGAAAGAATTAT+AGG | - | chr4_1:39162665-39162684 | Msa0546800:intron | 20.0% |
| !!! | TATAAATTATTTTAAGAGGG+TGG | - | chr4_1:39163046-39163065 | Msa0546800:CDS | 20.0% |
| !! | AGAAAAATCATAAAACAGAA+TGG | - | chr4_1:39163246-39163265 | Msa0546800:CDS | 20.0% |
| !! | CAATTCAATTCAACATTAAA+GGG | + | chr4_1:39163278-39163297 | None:intergenic | 20.0% |
| !!! | CAATAGAGCATTTTATTTTA+AGG | - | chr4_1:39163349-39163368 | Msa0546800:CDS | 20.0% |
| !! | CTACTAGATCAATATATATA+TGG | + | chr4_1:39163710-39163729 | None:intergenic | 20.0% |
| !! | TTAATTTAAATGTGAAGAAG+TGG | - | chr4_1:39163770-39163789 | Msa0546800:intron | 20.0% |
| !! | ATTAATTGCACAACATTTAA+AGG | - | chr4_1:39163862-39163881 | Msa0546800:intron | 20.0% |
| !! | TTTCGAATATAAATTGTGTT+AGG | - | chr4_1:39164153-39164172 | Msa0546800:intron | 20.0% |
| !! | AATATGTAACAAACAATTGT+TGG | + | chr4_1:39164731-39164750 | None:intergenic | 20.0% |
| !!! | ATTATTAGTGGATTAAAATG+AGG | - | chr4_1:39164792-39164811 | Msa0546800:intron | 20.0% |
| !!! | TTATTAGTGGATTAAAATGA+GGG | - | chr4_1:39164793-39164812 | Msa0546800:intron | 20.0% |
| !! | TATTGAAATTCATAGTCATA+GGG | + | chr4_1:39165327-39165346 | None:intergenic | 20.0% |
| !! | ATATTGAAATTCATAGTCAT+AGG | + | chr4_1:39165328-39165347 | None:intergenic | 20.0% |
| !!! | TGAAAATTTGTTGATGAAGT+TGG | + | chr4_1:39158889-39158908 | None:intergenic | 25.0% |
| ! | GAAACAATGTTAAAACAACA+TGG | + | chr4_1:39159034-39159053 | None:intergenic | 25.0% |
| ! | TAGTATACTATTATGCATCA+TGG | - | chr4_1:39159244-39159263 | Msa0546800:CDS | 25.0% |
| ! | CTTAATATTGCAGTAAAATG+TGG | - | chr4_1:39159306-39159325 | Msa0546800:CDS | 25.0% |
| ! | TTAGTAGACAGAAATTGTAA+AGG | + | chr4_1:39159431-39159450 | None:intergenic | 25.0% |
| ! | AGACAAAAAGAAAAAGACAA+GGG | + | chr4_1:39159481-39159500 | None:intergenic | 25.0% |
| ! | CAGAGGAAAAAGAAAATTAA+CGG | - | chr4_1:39159502-39159521 | Msa0546800:intron | 25.0% |
| ! | AGAGGAAAAAGAAAATTAAC+GGG | - | chr4_1:39159503-39159522 | Msa0546800:intron | 25.0% |
| ! | TTGATGAAATTAAACTCGTA+TGG | + | chr4_1:39159623-39159642 | None:intergenic | 25.0% |
| ! | AATCTAACCATCAAATCAAA+AGG | - | chr4_1:39159641-39159660 | Msa0546800:intron | 25.0% |
| ! | ATACTAATTAGTCCAAACTT+TGG | - | chr4_1:39160082-39160101 | Msa0546800:intron | 25.0% |
| ! | AAACTTATAGTTCCAAAGTT+TGG | + | chr4_1:39160097-39160116 | None:intergenic | 25.0% |
| !!! | TAAGTTTGCTATTTTTGCTA+AGG | - | chr4_1:39160110-39160129 | Msa0546800:intron | 25.0% |
| !!! | AAGTTTGCTATTTTTGCTAA+GGG | - | chr4_1:39160111-39160130 | Msa0546800:intron | 25.0% |
| ! | AGTGGCATATATCATTAAAT+AGG | - | chr4_1:39160170-39160189 | Msa0546800:intron | 25.0% |
| ! | TAACTCCCCTATATATTTAT+AGG | + | chr4_1:39160213-39160232 | None:intergenic | 25.0% |
| ! | CTATATGCCAAAAAATTCAA+TGG | - | chr4_1:39160235-39160254 | Msa0546800:intron | 25.0% |
| !!! | CTAAATGCCATTGAATTTTT+TGG | + | chr4_1:39160245-39160264 | None:intergenic | 25.0% |
| !!! | GACTTGTTAATGTAATAAAC+AGG | - | chr4_1:39160304-39160323 | Msa0546800:intron | 25.0% |
| ! | AGAAAAGGTTCATGAAATAT+TGG | - | chr4_1:39160358-39160377 | Msa0546800:intron | 25.0% |
| ! | TTCAAAACTTCATATATGCA+AGG | - | chr4_1:39160530-39160549 | Msa0546800:intron | 25.0% |
| ! | GCAAGGTAATATAATGTTAT+AGG | - | chr4_1:39160547-39160566 | Msa0546800:intron | 25.0% |
| ! | AAACATTGAAACTTCATGTT+GGG | + | chr4_1:39160640-39160659 | None:intergenic | 25.0% |
| !! | TTTTACCAGTTATGGTTTAA+AGG | + | chr4_1:39160685-39160704 | None:intergenic | 25.0% |
| ! | TAACACTGTTGTAATAAACT+AGG | - | chr4_1:39160722-39160741 | Msa0546800:intron | 25.0% |
| !!! | AATTTTTGACTTAGATTCCT+TGG | + | chr4_1:39161050-39161069 | None:intergenic | 25.0% |
| ! | AGGAATCTAAGTCAAAAATT+TGG | - | chr4_1:39161050-39161069 | Msa0546800:CDS | 25.0% |
| ! | TTTCATAAGTAAAGCTATCA+AGG | - | chr4_1:39161201-39161220 | Msa0546800:intron | 25.0% |
| ! | TTCATAAGTAAAGCTATCAA+GGG | - | chr4_1:39161202-39161221 | Msa0546800:intron | 25.0% |
| ! | TTCAGTCTTAATGAAAAAAC+AGG | - | chr4_1:39161244-39161263 | Msa0546800:intron | 25.0% |
| ! | AATTTCATGAAAGAGTTACT+AGG | - | chr4_1:39161320-39161339 | Msa0546800:intron | 25.0% |
| ! | CATACATACACGAATAAATT+GGG | + | chr4_1:39161423-39161442 | None:intergenic | 25.0% |
| ! | ACATACATACACGAATAAAT+TGG | + | chr4_1:39161424-39161443 | None:intergenic | 25.0% |
| ! | ATAATAAGATGGATGCTAAA+GGG | + | chr4_1:39161561-39161580 | None:intergenic | 25.0% |
| ! | TATAATAAGATGGATGCTAA+AGG | + | chr4_1:39161562-39161581 | None:intergenic | 25.0% |
| ! | ACATGAATAATGTACATATC+AGG | - | chr4_1:39162254-39162273 | Msa0546800:CDS | 25.0% |
| ! | CATATCAGGAATTTAAATTG+TGG | - | chr4_1:39162268-39162287 | Msa0546800:CDS | 25.0% |
| ! | TTTGATATTGCAGAAAATTG+CGG | - | chr4_1:39162304-39162323 | Msa0546800:CDS | 25.0% |
| !!! | CTAATTTCTGTTGATTTGTA+AGG | + | chr4_1:39162548-39162567 | None:intergenic | 25.0% |
| !! | ATCAACAGAAATTAGCATTT+TGG | - | chr4_1:39162553-39162572 | Msa0546800:intron | 25.0% |
| ! | TTCTTTCTTATTCATCCATT+TGG | + | chr4_1:39162661-39162680 | None:intergenic | 25.0% |
| ! | TAAGAAAGAATTATAGGACA+TGG | - | chr4_1:39162671-39162690 | Msa0546800:intron | 25.0% |
| ! | TTATAGGGATTCATTCAATA+TGG | - | chr4_1:39162718-39162737 | Msa0546800:intron | 25.0% |
| ! | GTTAATTGGATTGATTAACA+AGG | - | chr4_1:39162762-39162781 | Msa0546800:intron | 25.0% |
| ! | ACTTTCGAAAAAAAGATGTT+TGG | - | chr4_1:39163004-39163023 | Msa0546800:CDS | 25.0% |
| ! | GCAATTCAATTCAACATTAA+AGG | + | chr4_1:39163279-39163298 | None:intergenic | 25.0% |
| ! | AAATGCTACTATAGTCTATA+AGG | + | chr4_1:39163687-39163706 | None:intergenic | 25.0% |
| ! | ATTAATTGCACAGCATTTAA+AGG | - | chr4_1:39163991-39164010 | Msa0546800:CDS | 25.0% |
| ! | AATTGTGTTAGGTTACATAT+TGG | - | chr4_1:39164164-39164183 | Msa0546800:intron | 25.0% |
| ! | AAAAGACACTTAAAAAGGAA+CGG | + | chr4_1:39164316-39164335 | None:intergenic | 25.0% |
| !!! | TCCTTTTTAAGTGTCTTTTT+AGG | - | chr4_1:39164317-39164336 | Msa0546800:intron | 25.0% |
| !!! | CCTTTTTAAGTGTCTTTTTA+GGG | - | chr4_1:39164318-39164337 | Msa0546800:intron | 25.0% |
| ! | TTTCATGGAACTATTATCAT+AGG | + | chr4_1:39164562-39164581 | None:intergenic | 25.0% |
| !!! | CATAGGATTTTAACTTTTCA+TGG | + | chr4_1:39164577-39164596 | None:intergenic | 25.0% |
| ! | AGTACTACTATGTTATTCAT+AGG | + | chr4_1:39164594-39164613 | None:intergenic | 25.0% |
| ! | ATAAAGCGCACAAAAAAAAT+AGG | - | chr4_1:39164679-39164698 | Msa0546800:intron | 25.0% |
| ! | CAAAAAAAATAGGAATCTGT+TGG | - | chr4_1:39164689-39164708 | Msa0546800:intron | 25.0% |
| !! | GATTAAAATGAGGGTATAAT+AGG | - | chr4_1:39164802-39164821 | Msa0546800:intron | 25.0% |
| !!! | TTCTAAAACGACACTTAAAA+AGG | - | chr4_1:39164868-39164887 | Msa0546800:intron | 25.0% |
| !! | TTTTAGCCTCAATTTTGTTA+AGG | - | chr4_1:39164974-39164993 | Msa0546800:intron | 25.0% |
| !! | TTTTGTCCTTAACAAAATTG+AGG | + | chr4_1:39164983-39165002 | None:intergenic | 25.0% |
| ! | TTAAGGACAAAATTGTACAA+AGG | - | chr4_1:39164991-39165010 | Msa0546800:intron | 25.0% |
| ! | AATCAATTTGCATTGTATTC+AGG | - | chr4_1:39165029-39165048 | Msa0546800:intron | 25.0% |
| ACACATAACTTCTCTTTCTT+TGG | - | chr4_1:39158944-39158963 | Msa0546800:three_prime_UTR | 30.0% | |
| CTTCTTCATCTTCATAATGT+TGG | + | chr4_1:39158997-39159016 | None:intergenic | 30.0% | |
| CAATGTTAAAACAACATGGA+GGG | + | chr4_1:39159030-39159049 | None:intergenic | 30.0% | |
| ACAATGTTAAAACAACATGG+AGG | + | chr4_1:39159031-39159050 | None:intergenic | 30.0% | |
| AATTCTAAGCGTTTCATGTT+TGG | - | chr4_1:39159055-39159074 | Msa0546800:CDS | 30.0% | |
| ATTCTAAGCGTTTCATGTTT+GGG | - | chr4_1:39159056-39159075 | Msa0546800:CDS | 30.0% | |
| CTTACAATATCAATGTGAGA+GGG | + | chr4_1:39159130-39159149 | None:intergenic | 30.0% | |
| ACTTACAATATCAATGTGAG+AGG | + | chr4_1:39159131-39159150 | None:intergenic | 30.0% | |
| !!! | TGCATCATGGTTTTAAATTG+CGG | - | chr4_1:39159257-39159276 | Msa0546800:CDS | 30.0% |
| ! | TAAATTGCGGTTGTAGTTTT+TGG | - | chr4_1:39159270-39159289 | Msa0546800:CDS | 30.0% |
| ATATTGCAGTAAAATGTGGT+TGG | - | chr4_1:39159310-39159329 | Msa0546800:intron | 30.0% | |
| CAGACAAAAAGAAAAAGACA+AGG | + | chr4_1:39159482-39159501 | None:intergenic | 30.0% | |
| !! | GAACTTGAAAAAGAGGTATT+TGG | - | chr4_1:39159541-39159560 | Msa0546800:intron | 30.0% |
| AGTTAGAGTGACATATATAG+AGG | - | chr4_1:39159914-39159933 | Msa0546800:intron | 30.0% | |
| TTAATGATATATGCCACTGA+GGG | + | chr4_1:39160168-39160187 | None:intergenic | 30.0% | |
| TTTAATGATATATGCCACTG+AGG | + | chr4_1:39160169-39160188 | None:intergenic | 30.0% | |
| ! | TTTCATGAACCTTTTCTTCT+TGG | + | chr4_1:39160355-39160374 | None:intergenic | 30.0% |
| GGTTCATGAAATATTGGATA+TGG | - | chr4_1:39160364-39160383 | Msa0546800:intron | 30.0% | |
| ATGGTAAATAATAGGCCAAA+CGG | - | chr4_1:39160383-39160402 | Msa0546800:intron | 30.0% | |
| ACCTTAGAAGGAAGAAAATT+GGG | + | chr4_1:39160425-39160444 | None:intergenic | 30.0% | |
| TACCTTAGAAGGAAGAAAAT+TGG | + | chr4_1:39160426-39160445 | None:intergenic | 30.0% | |
| GAACATTGTATTACCTTAGA+AGG | + | chr4_1:39160437-39160456 | None:intergenic | 30.0% | |
| ACGCTATGAAAATTTAGCTA+GGG | + | chr4_1:39160499-39160518 | None:intergenic | 30.0% | |
| AACATTGAAACTTCATGTTG+GGG | + | chr4_1:39160639-39160658 | None:intergenic | 30.0% | |
| GAAACATTGAAACTTCATGT+TGG | + | chr4_1:39160641-39160660 | None:intergenic | 30.0% | |
| !! | AGTTTGAAGAGTGCTAATTT+GGG | + | chr4_1:39161002-39161021 | None:intergenic | 30.0% |
| ! | AAGTCAAAAATTTGGAACCA+AGG | - | chr4_1:39161058-39161077 | Msa0546800:intron | 30.0% |
| ! | AGTCAAAAATTTGGAACCAA+GGG | - | chr4_1:39161059-39161078 | Msa0546800:intron | 30.0% |
| TAGTAATGTTCATGAAAGGA+TGG | - | chr4_1:39161156-39161175 | Msa0546800:intron | 30.0% | |
| ! | GCAGAAAGAAAATAGTTTTC+AGG | - | chr4_1:39161288-39161307 | Msa0546800:intron | 30.0% |
| !! | GAAAGAAAATAGTTTTCAGG+AGG | - | chr4_1:39161291-39161310 | Msa0546800:intron | 30.0% |
| GAAAGAGTTACTAGGAAAAA+TGG | - | chr4_1:39161328-39161347 | Msa0546800:intron | 30.0% | |
| !! | AATTGTGCAATTTTGACCTT+TGG | - | chr4_1:39161512-39161531 | Msa0546800:intron | 30.0% |
| AGGCTATAGACATTAGAAAT+TGG | + | chr4_1:39161609-39161628 | None:intergenic | 30.0% | |
| ! | AGTGATTGGTTGCAAATATT+AGG | + | chr4_1:39161776-39161795 | None:intergenic | 30.0% |
| !! | ATGCTTTCAGATAACTTGTT+TGG | + | chr4_1:39161905-39161924 | None:intergenic | 30.0% |
| TCTGAATCAAAGATACCATA+TGG | + | chr4_1:39162112-39162131 | None:intergenic | 30.0% | |
| AACATAACCAGATTCTTGTA+AGG | + | chr4_1:39162160-39162179 | None:intergenic | 30.0% | |
| ! | TATGTTCACTTCAAGTTCTA+TGG | - | chr4_1:39162174-39162193 | Msa0546800:CDS | 30.0% |
| ! | TTAGTAATGGAATAGACGAA+GGG | + | chr4_1:39162219-39162238 | None:intergenic | 30.0% |
| TTCCATTACTAAGGAAGTTA+AGG | - | chr4_1:39162227-39162246 | Msa0546800:CDS | 30.0% | |
| TACCTTAACTTCCTTAGTAA+TGG | + | chr4_1:39162232-39162251 | None:intergenic | 30.0% | |
| !! | GGATTTTAGTATGTTTCTTG+TGG | - | chr4_1:39162476-39162495 | Msa0546800:CDS | 30.0% |
| ! | CAATCCAATTAACTTTTCTG+AGG | + | chr4_1:39162755-39162774 | None:intergenic | 30.0% |
| ATCATAAAACAGAATGGCAA+TGG | - | chr4_1:39163252-39163271 | Msa0546800:CDS | 30.0% | |
| ! | GAATTGAATTGCTATTGTGT+AGG | - | chr4_1:39163287-39163306 | Msa0546800:CDS | 30.0% |
| AGATGCTTCTAATATGAAAG+AGG | - | chr4_1:39163377-39163396 | Msa0546800:CDS | 30.0% | |
| AAAACAATATGGCATGCTTT+AGG | - | chr4_1:39163472-39163491 | Msa0546800:intron | 30.0% | |
| GTGGTATAATGTGTATGTTT+GGG | + | chr4_1:39163638-39163657 | None:intergenic | 30.0% | |
| TGTGGTATAATGTGTATGTT+TGG | + | chr4_1:39163639-39163658 | None:intergenic | 30.0% | |
| TGAATAGAATAAGCAAACTG+TGG | + | chr4_1:39163657-39163676 | None:intergenic | 30.0% | |
| ATATTGATCTAGTAGCATAG+TGG | - | chr4_1:39163715-39163734 | Msa0546800:intron | 30.0% | |
| TCATTGCATAACTTATGCAA+GGG | + | chr4_1:39163819-39163838 | None:intergenic | 30.0% | |
| TTCATTGCATAACTTATGCA+AGG | + | chr4_1:39163820-39163839 | None:intergenic | 30.0% | |
| TGAATCTGATATTGTGTGTT+CGG | - | chr4_1:39163943-39163962 | Msa0546800:CDS | 30.0% | |
| TGAATCTGATATTGTGTGTT+CGG | - | chr4_1:39163943-39163962 | Msa0546800:CDS | 30.0% | |
| !!! | TTGGTTTTATCATTCTCACA+AGG | - | chr4_1:39164183-39164202 | Msa0546800:intron | 30.0% |
| CCCTAAAAAGACACTTAAAA+AGG | + | chr4_1:39164321-39164340 | None:intergenic | 30.0% | |
| TTCCTATTTAACTATCGTTC+TGG | - | chr4_1:39164352-39164371 | Msa0546800:intron | 30.0% | |
| TACCAGAACGATAGTTAAAT+AGG | + | chr4_1:39164357-39164376 | None:intergenic | 30.0% | |
| ! | ACTATCGTTCTGGTATTTTA+AGG | - | chr4_1:39164362-39164381 | Msa0546800:intron | 30.0% |
| !! | CTATCGTTCTGGTATTTTAA+GGG | - | chr4_1:39164363-39164382 | Msa0546800:intron | 30.0% |
| AAAAAATAGGAATCTGTTGG+AGG | - | chr4_1:39164692-39164711 | Msa0546800:intron | 30.0% | |
| AAACGACACTTAAAAAGGAA+CGG | - | chr4_1:39164873-39164892 | Msa0546800:intron | 30.0% | |
| CAAAATCAAGCATGTTTCTT+AGG | + | chr4_1:39165170-39165189 | None:intergenic | 30.0% | |
| !! | ATATTGATTCACTAGTGGAA+TGG | - | chr4_1:39165196-39165215 | Msa0546800:intron | 30.0% |
| !! | TATTGATTCACTAGTGGAAT+GGG | - | chr4_1:39165197-39165216 | Msa0546800:intron | 30.0% |
| AATCAATGGTTGAATGCTTT+AGG | - | chr4_1:39165256-39165275 | Msa0546800:CDS | 30.0% | |
| ATCAATGGTTGAATGCTTTA+GGG | - | chr4_1:39165257-39165276 | Msa0546800:CDS | 30.0% | |
| !! | ATAGGGTATCTTTTCAACAA+TGG | + | chr4_1:39165310-39165329 | None:intergenic | 30.0% |
| ATTAGACCGGCTATAATATA+TGG | + | chr4_1:39165459-39165478 | None:intergenic | 30.0% | |
| AGTTTGACTATCAATTAGAC+CGG | + | chr4_1:39165472-39165491 | None:intergenic | 30.0% | |
| GATAAAAACCGTCTTTGTTG+TGG | + | chr4_1:39158851-39158870 | None:intergenic | 35.0% | |
| GTTATGTGTTGAAGTTGAGA+GGG | + | chr4_1:39158933-39158952 | None:intergenic | 35.0% | |
| AGTTATGTGTTGAAGTTGAG+AGG | + | chr4_1:39158934-39158953 | None:intergenic | 35.0% | |
| ATCTAGTTGAGTATGATCCA+TGG | + | chr4_1:39159086-39159105 | None:intergenic | 35.0% | |
| GATTAAGAATTGTTCCATCG+AGG | - | chr4_1:39159381-39159400 | Msa0546800:intron | 35.0% | |
| AACAATATTGCAATCCTCGA+TGG | + | chr4_1:39159398-39159417 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTTTTGTCTGCAG+AGG | - | chr4_1:39159485-39159504 | Msa0546800:intron | 35.0% |
| GAAAGAGGAACTTGAAAAAG+AGG | - | chr4_1:39159534-39159553 | Msa0546800:intron | 35.0% | |
| AGTGACATATATAGAGGAGA+GGG | - | chr4_1:39159920-39159939 | Msa0546800:intron | 35.0% | |
| !! | TCAGTCATAGCTTTTTGGAA+AGG | + | chr4_1:39160036-39160055 | None:intergenic | 35.0% |
| ! | TGAACTCAGTCATAGCTTTT+TGG | + | chr4_1:39160041-39160060 | None:intergenic | 35.0% |
| TAATGATATATGCCACTGAG+GGG | + | chr4_1:39160167-39160186 | None:intergenic | 35.0% | |
| ATAGATATAGCTGAACCGTT+TGG | + | chr4_1:39160401-39160420 | None:intergenic | 35.0% | |
| ! | TCCCAATTTTCTTCCTTCTA+AGG | - | chr4_1:39160421-39160440 | Msa0546800:intron | 35.0% |
| CACGCTATGAAAATTTAGCT+AGG | + | chr4_1:39160500-39160519 | None:intergenic | 35.0% | |
| AGTCTTCTTACATGCATGTA+TGG | + | chr4_1:39160605-39160624 | None:intergenic | 35.0% | |
| ACATTGAAACTTCATGTTGG+GGG | + | chr4_1:39160638-39160657 | None:intergenic | 35.0% | |
| TCAATGTTTCGTCATCACTT+AGG | - | chr4_1:39160651-39160670 | Msa0546800:intron | 35.0% | |
| TTGGTCCTTTAAACCATAAC+TGG | - | chr4_1:39160677-39160696 | Msa0546800:intron | 35.0% | |
| !! | CAGTTTGAAGAGTGCTAATT+TGG | + | chr4_1:39161003-39161022 | None:intergenic | 35.0% |
| CAAATTAGCACTCTTCAAAC+TGG | - | chr4_1:39161001-39161020 | Msa0546800:CDS | 35.0% | |
| ACATGAACAAGAAATCACCA+AGG | - | chr4_1:39161030-39161049 | Msa0546800:CDS | 35.0% | |
| GCAGTAGTAATGTTCATGAA+AGG | - | chr4_1:39161152-39161171 | Msa0546800:intron | 35.0% | |
| ! | AAGGATGGCATTTGAAACAA+AGG | - | chr4_1:39161171-39161190 | Msa0546800:intron | 35.0% |
| TCTAATGTCTATAGCCTATG+TGG | - | chr4_1:39161612-39161631 | Msa0546800:CDS | 35.0% | |
| GCTGAAAATAGTACAGTGAT+TGG | + | chr4_1:39161790-39161809 | None:intergenic | 35.0% | |
| ! | ACTGTACTATTTTCAGCTGA+GGG | - | chr4_1:39161793-39161812 | Msa0546800:CDS | 35.0% |
| TCATTCTCTTCTGATAGAAG+TGG | + | chr4_1:39161869-39161888 | None:intergenic | 35.0% | |
| AACATCAAGAGCAATGGAAT+TGG | - | chr4_1:39161964-39161983 | Msa0546800:intron | 35.0% | |
| GCAATGGAATTGGAAAAATC+AGG | - | chr4_1:39161974-39161993 | Msa0546800:intron | 35.0% | |
| GAATGCAATGATCTTGAAAC+AGG | + | chr4_1:39162001-39162020 | None:intergenic | 35.0% | |
| ! | CAACATAAGACTTGGTTTCT+GGG | + | chr4_1:39162065-39162084 | None:intergenic | 35.0% |
| TTATGTTGCACAAGGAATCA+AGG | - | chr4_1:39162077-39162096 | Msa0546800:intron | 35.0% | |
| TATTGGTCCTTACAAGAATC+TGG | - | chr4_1:39162150-39162169 | Msa0546800:CDS | 35.0% | |
| GAAGGGCTTGATATAAACTT+TGG | + | chr4_1:39162202-39162221 | None:intergenic | 35.0% | |
| ! | CTTAGTAATGGAATAGACGA+AGG | + | chr4_1:39162220-39162239 | None:intergenic | 35.0% |
| CTTCGTCTATTCCATTACTA+AGG | - | chr4_1:39162218-39162237 | Msa0546800:CDS | 35.0% | |
| !! | TTTTTCAATTGAGGTTGCGT+CGG | + | chr4_1:39162340-39162359 | None:intergenic | 35.0% |
| CTTGCAAATTTCGCAACATT+TGG | + | chr4_1:39162449-39162468 | None:intergenic | 35.0% | |
| !! | CTTCAGACAGTTGATTTGAA+AGG | - | chr4_1:39162522-39162541 | Msa0546800:CDS | 35.0% |
| ATGCTTGTATCATGCATGTA+TGG | - | chr4_1:39162589-39162608 | Msa0546800:intron | 35.0% | |
| !!! | ATTAACTTTTCTGAGGTGGA+TGG | + | chr4_1:39162748-39162767 | None:intergenic | 35.0% |
| TCCACCTCAGAAAAGTTAAT+TGG | - | chr4_1:39162748-39162767 | Msa0546800:intron | 35.0% | |
| !! | TCCAATTAACTTTTCTGAGG+TGG | + | chr4_1:39162752-39162771 | None:intergenic | 35.0% |
| CGACACTTGTCATTATATCA+TGG | + | chr4_1:39162851-39162870 | None:intergenic | 35.0% | |
| TCAGTTGTACGTGAACTTTA+TGG | - | chr4_1:39163527-39163546 | Msa0546800:intron | 35.0% | |
| CAGTTGTACGTGAACTTTAT+GGG | - | chr4_1:39163528-39163547 | Msa0546800:intron | 35.0% | |
| ACTTTATGGGCTTGAATTTG+TGG | - | chr4_1:39163541-39163560 | Msa0546800:intron | 35.0% | |
| GCTAGCTATAATTGTGTGTT+TGG | - | chr4_1:39163884-39163903 | Msa0546800:intron | 35.0% | |
| GCTAGCTATAATTGTGTGTT+TGG | - | chr4_1:39163884-39163903 | Msa0546800:intron | 35.0% | |
| ATTTGCATTGTATTCAGGTG+AGG | - | chr4_1:39165034-39165053 | Msa0546800:intron | 35.0% | |
| CTATCTTCAAGCTTCAATTC+TGG | - | chr4_1:39165107-39165126 | Msa0546800:intron | 35.0% | |
| CTACTAGCAACAAAAGGATA+GGG | - | chr4_1:39165130-39165149 | Msa0546800:intron | 35.0% | |
| ATGTTTCTTAGGAGAAGTTC+TGG | + | chr4_1:39165159-39165178 | None:intergenic | 35.0% | |
| ! | AAACATGCTTGATTTTGCTG+TGG | - | chr4_1:39165173-39165192 | Msa0546800:intron | 35.0% |
| !! | TGTGGATATTGATTCACTAG+TGG | - | chr4_1:39165191-39165210 | Msa0546800:intron | 35.0% |
| TCAATGGTTGAATGCTTTAG+GGG | - | chr4_1:39165258-39165277 | Msa0546800:CDS | 35.0% | |
| ACCGGCTATAATATATGGAA+GGG | + | chr4_1:39165454-39165473 | None:intergenic | 35.0% | |
| ACTCACAACCACAACAAAGA+CGG | - | chr4_1:39158840-39158859 | Msa0546800:three_prime_UTR | 40.0% | |
| AGAAGATGATGACACAAGCT+TGG | + | chr4_1:39158972-39158991 | None:intergenic | 40.0% | |
| TTTCATGTTTGGGTCTTCCA+TGG | - | chr4_1:39159066-39159085 | Msa0546800:CDS | 40.0% | |
| CTAGTAGCTTCTCACAAACA+TGG | + | chr4_1:39159227-39159246 | None:intergenic | 40.0% | |
| TAAAATGTGGTTGGCATGAC+TGG | - | chr4_1:39159319-39159338 | Msa0546800:intron | 40.0% | |
| GAGTGACATATATAGAGGAG+AGG | - | chr4_1:39159919-39159938 | Msa0546800:intron | 40.0% | |
| !!! | TGCTATTTTTGCTAAGGGAG+AGG | - | chr4_1:39160116-39160135 | Msa0546800:intron | 40.0% |
| AACAGGTCACTATGCTTCAA+AGG | - | chr4_1:39160321-39160340 | Msa0546800:intron | 40.0% | |
| CACTATGCTTCAAAGGTTGT+TGG | - | chr4_1:39160328-39160347 | Msa0546800:intron | 40.0% | |
| GTTGTTGGACCAAGAAGAAA+AGG | - | chr4_1:39160343-39160362 | Msa0546800:intron | 40.0% | |
| TTCGTCATCACTTAGGAGTT+TGG | - | chr4_1:39160658-39160677 | Msa0546800:intron | 40.0% | |
| !!! | GCTTTTTTGCCAGTTGAACT+AGG | + | chr4_1:39160766-39160785 | None:intergenic | 40.0% |
| GCAAAAAAGCCGATACTGTT+AGG | - | chr4_1:39160776-39160795 | Msa0546800:CDS | 40.0% | |
| AAAAGCCGATACTGTTAGGT+TGG | - | chr4_1:39160780-39160799 | Msa0546800:CDS | 40.0% | |
| GACTTCCAACCTAACAGTAT+CGG | + | chr4_1:39160788-39160807 | None:intergenic | 40.0% | |
| TTGTGTGTGCGAGTTTGTAA+TGG | - | chr4_1:39160839-39160858 | Msa0546800:CDS | 40.0% | |
| ATTGTTAGCAGAGCTAGTCA+TGG | - | chr4_1:39160949-39160968 | Msa0546800:intron | 40.0% | |
| CATTGCTCATCAAATTCCCT+TGG | + | chr4_1:39161078-39161097 | None:intergenic | 40.0% | |
| CTGCTTCTTTGAACAGAACT+AGG | + | chr4_1:39161136-39161155 | None:intergenic | 40.0% | |
| AAATTCGTCCTGCATACCTT+AGG | + | chr4_1:39161400-39161419 | None:intergenic | 40.0% | |
| TCGCGCAACTAAAATACCAA+AGG | + | chr4_1:39161531-39161550 | None:intergenic | 40.0% | |
| GTCTAAGTTGCGACTAACTT+CGG | + | chr4_1:39161660-39161679 | None:intergenic | 40.0% | |
| ATCAAGTCTATGTGGTACAG+AGG | + | chr4_1:39161682-39161701 | None:intergenic | 40.0% | |
| ! | CACTGTACTATTTTCAGCTG+AGG | - | chr4_1:39161792-39161811 | Msa0546800:CDS | 40.0% |
| ACGTAATCTAGACATGCACT+TGG | - | chr4_1:39161817-39161836 | Msa0546800:CDS | 40.0% | |
| CAGAAGAGAATGACCTAAAG+TGG | - | chr4_1:39161876-39161895 | Msa0546800:intron | 40.0% | |
| !! | ACTTGTTTGGTTGCCACTTT+AGG | + | chr4_1:39161892-39161911 | None:intergenic | 40.0% |
| ACTCAGAACATCAAGAGCAA+TGG | - | chr4_1:39161958-39161977 | Msa0546800:intron | 40.0% | |
| CTTTAAGCTCAAGAAGCTTC+CGG | - | chr4_1:39162023-39162042 | Msa0546800:intron | 40.0% | |
| TTTAAGCTCAAGAAGCTTCC+GGG | - | chr4_1:39162024-39162043 | Msa0546800:intron | 40.0% | |
| ! | GCAACATAAGACTTGGTTTC+TGG | + | chr4_1:39162066-39162085 | None:intergenic | 40.0% |
| ! | ACCAAGTCTTATGTTGCACA+AGG | - | chr4_1:39162069-39162088 | Msa0546800:intron | 40.0% |
| TCCTTGTGCAACATAAGACT+TGG | + | chr4_1:39162073-39162092 | None:intergenic | 40.0% | |
| ATTCAGAAGAGTCCATTCCT+AGG | - | chr4_1:39162125-39162144 | Msa0546800:intron | 40.0% | |
| TTCAGAAGAGTCCATTCCTA+GGG | - | chr4_1:39162126-39162145 | Msa0546800:intron | 40.0% | |
| TTGTAAGGACCAATATCCCT+AGG | + | chr4_1:39162145-39162164 | None:intergenic | 40.0% | |
| GCGAAATTTGCAAGTTTCAC+TGG | - | chr4_1:39162455-39162474 | Msa0546800:CDS | 40.0% | |
| GTATGTTTCTTGTGGCTTAC+AGG | - | chr4_1:39162484-39162503 | Msa0546800:CDS | 40.0% | |
| TATGTTGCCTCCTATGTTGA+GGG | + | chr4_1:39163316-39163335 | None:intergenic | 40.0% | |
| TTATGTTGCCTCCTATGTTG+AGG | + | chr4_1:39163317-39163336 | None:intergenic | 40.0% | |
| ! | ATGCTTTAGGCACAAAGGAA+GGG | - | chr4_1:39163485-39163504 | Msa0546800:intron | 40.0% |
| CAGAGAGCAAATGTGACATT+TGG | + | chr4_1:39163569-39163588 | None:intergenic | 40.0% | |
| TGATCTAGTAGCATAGTGGT+TGG | - | chr4_1:39163719-39163738 | Msa0546800:intron | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | + | chr4_1:39164877-39164896 | None:intergenic | 40.0% | |
| AGACACTTAAAAAGGAACGG+AGG | + | chr4_1:39164313-39164332 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+TGG | - | chr4_1:39164877-39164896 | Msa0546800:intron | 40.0% | |
| ATTCAGGTGAGGATATACAC+AGG | - | chr4_1:39165045-39165064 | Msa0546800:intron | 40.0% | |
| ! | TTCTGGCTACTAGCAACAAA+AGG | - | chr4_1:39165124-39165143 | Msa0546800:intron | 40.0% |
| GCTACTAGCAACAAAAGGAT+AGG | - | chr4_1:39165129-39165148 | Msa0546800:intron | 40.0% | |
| ! | AGGGACTCTAAGGAAATCAA+TGG | - | chr4_1:39165242-39165261 | Msa0546800:CDS | 40.0% |
| CCGGCTATAATATATGGAAG+GGG | + | chr4_1:39165453-39165472 | None:intergenic | 40.0% | |
| CCCCTTCCATATATTATAGC+CGG | - | chr4_1:39165450-39165469 | Msa0546800:CDS | 40.0% | |
| GACCGGCTATAATATATGGA+AGG | + | chr4_1:39165455-39165474 | None:intergenic | 40.0% | |
| ! | TTTGTTGTGGTTGTGAGTGC+TGG | + | chr4_1:39158838-39158857 | None:intergenic | 45.0% |
| ! | GAAGTTGAGAGGGACTTTTC+AGG | + | chr4_1:39158923-39158942 | None:intergenic | 45.0% |
| AAACAACATGGAGGGCTAAG+AGG | + | chr4_1:39159022-39159041 | None:intergenic | 45.0% | |
| !! | TAACGGGCTGCAAAAGAAAG+AGG | - | chr4_1:39159519-39159538 | Msa0546800:intron | 45.0% |
| TTGAAACTTCATGTTGGGGG+TGG | + | chr4_1:39160635-39160654 | None:intergenic | 45.0% | |
| TCCACAAGTCCTAGTTCAAC+TGG | - | chr4_1:39160754-39160773 | Msa0546800:intron | 45.0% | |
| !! | GTTAGGTTGGAAGTCATGAC+CGG | - | chr4_1:39160793-39160812 | Msa0546800:CDS | 45.0% |
| !! | TTAGGTTGGAAGTCATGACC+GGG | - | chr4_1:39160794-39160813 | Msa0546800:CDS | 45.0% |
| TACAAACTCGCACACACAAG+TGG | + | chr4_1:39160838-39160857 | None:intergenic | 45.0% | |
| !! | TGCATACCTTAGGTGATGGA+TGG | + | chr4_1:39161390-39161409 | None:intergenic | 45.0% |
| ATCCATCACCTAAGGTATGC+AGG | - | chr4_1:39161389-39161408 | Msa0546800:intron | 45.0% | |
| GCTAGAAACACGATCCACAT+AGG | + | chr4_1:39161629-39161648 | None:intergenic | 45.0% | |
| AAGTTGCGACTAACTTCGGT+CGG | + | chr4_1:39161656-39161675 | None:intergenic | 45.0% | |
| TGCACTTGGATCTTCCAACT+AGG | - | chr4_1:39161831-39161850 | Msa0546800:CDS | 45.0% | |
| TCAAGGCAGCAAGATCCATA+TGG | - | chr4_1:39162094-39162113 | Msa0546800:intron | 45.0% | |
| GAGTCCATTCCTAGGGATAT+TGG | - | chr4_1:39162133-39162152 | Msa0546800:CDS | 45.0% | |
| AGGACCAATATCCCTAGGAA+TGG | + | chr4_1:39162140-39162159 | None:intergenic | 45.0% | |
| TTATGTAGCGGCCTAGATTG+TGG | - | chr4_1:39162363-39162382 | Msa0546800:CDS | 45.0% | |
| ! | ATGGCATGCTTTAGGCACAA+AGG | - | chr4_1:39163480-39163499 | Msa0546800:intron | 45.0% |
| ! | CATGCTTTAGGCACAAAGGA+AGG | - | chr4_1:39163484-39163503 | Msa0546800:intron | 45.0% |
| ! | TGCTTTAGGCACAAAGGAAG+GGG | - | chr4_1:39163486-39163505 | Msa0546800:intron | 45.0% |
| GTCACATTTGCTCTCTGTAG+TGG | - | chr4_1:39163572-39163591 | Msa0546800:intron | 45.0% | |
| TGTGTATGTTTGGGTGTGTG+AGG | + | chr4_1:39163629-39163648 | None:intergenic | 45.0% | |
| ! | ATGTGAAGAAGTGGAGTGTC+CGG | - | chr4_1:39163779-39163798 | Msa0546800:intron | 45.0% |
| TGCATAACTTATGCAAGGGC+CGG | + | chr4_1:39163815-39163834 | None:intergenic | 45.0% | |
| TGCAACCAGTTACCTACTTC+AGG | - | chr4_1:39165222-39165241 | Msa0546800:intron | 45.0% | |
| GCAACCAGTTACCTACTTCA+GGG | - | chr4_1:39165223-39165242 | Msa0546800:intron | 45.0% | |
| TACCTACTTCAGGGACTCTA+AGG | - | chr4_1:39165232-39165251 | Msa0546800:intron | 45.0% | |
| TTCCTTAGAGTCCCTGAAGT+AGG | + | chr4_1:39165237-39165256 | None:intergenic | 45.0% | |
| !! | GTTGAATGCTTTAGGGGTCA+TGG | - | chr4_1:39165264-39165283 | Msa0546800:CDS | 45.0% |
| !!! | AATAACTTTTTTTTAATATA+AGG | - | chr4_1:39162961-39162980 | Msa0546800:intron | 5.0% |
| !!! | AAAATTAAATTTTCTTTATT+CGG | - | chr4_1:39163083-39163102 | Msa0546800:CDS | 5.0% |
| !! | TTGTGAGTGCTGGTAGGAGT+GGG | + | chr4_1:39158828-39158847 | None:intergenic | 50.0% |
| !! | TTGTGGTTGTGAGTGCTGGT+AGG | + | chr4_1:39158834-39158853 | None:intergenic | 50.0% |
| ATATATGCCACTGAGGGGCA+TGG | + | chr4_1:39160162-39160181 | None:intergenic | 50.0% | |
| GCCAGTTGAACTAGGACTTG+TGG | + | chr4_1:39160758-39160777 | None:intergenic | 50.0% | |
| ! | TAGGTTGGAAGTCATGACCG+GGG | - | chr4_1:39160795-39160814 | Msa0546800:CDS | 50.0% |
| AAACTCGCACACACAAGTGG+AGG | + | chr4_1:39160835-39160854 | None:intergenic | 50.0% | |
| GTCCTGCATACCTTAGGTGA+TGG | + | chr4_1:39161394-39161413 | None:intergenic | 50.0% | |
| GGATCAAGCAGTGACCTAGT+TGG | + | chr4_1:39161848-39161867 | None:intergenic | 50.0% | |
| GTGTAGGCAACCCTCAACAT+AGG | - | chr4_1:39163303-39163322 | Msa0546800:CDS | 50.0% | |
| TAGGCAACCCTCAACATAGG+AGG | - | chr4_1:39163306-39163325 | Msa0546800:CDS | 50.0% | |
| ! | GCTTTAGGCACAAAGGAAGG+GGG | - | chr4_1:39163487-39163506 | Msa0546800:intron | 50.0% |
| TGAGGAGGTGAACTTACAGC+TGG | + | chr4_1:39163611-39163630 | None:intergenic | 50.0% | |
| GTATGTTTGGGTGTGTGAGG+AGG | + | chr4_1:39163626-39163645 | None:intergenic | 50.0% | |
| ! | TGTGAAGAAGTGGAGTGTCC+GGG | - | chr4_1:39163780-39163799 | Msa0546800:intron | 50.0% |
| CATAACTTATGCAAGGGCCG+GGG | + | chr4_1:39163813-39163832 | None:intergenic | 50.0% | |
| GCATAACTTATGCAAGGGCC+GGG | + | chr4_1:39163814-39163833 | None:intergenic | 50.0% | |
| GTGAGGATATACACAGGCGA+TGG | - | chr4_1:39165051-39165070 | Msa0546800:intron | 50.0% | |
| GAGTCCCTGAAGTAGGTAAC+TGG | + | chr4_1:39165230-39165249 | None:intergenic | 50.0% | |
| !! | GAATGCTTTAGGGGTCATGG+TGG | - | chr4_1:39165267-39165286 | Msa0546800:CDS | 50.0% |
| ! | GGGTCATGGTGGTAATGTCA+AGG | - | chr4_1:39165278-39165297 | Msa0546800:CDS | 50.0% |
| !! | GTTGTGAGTGCTGGTAGGAG+TGG | + | chr4_1:39158829-39158848 | None:intergenic | 55.0% |
| ATGAGAACCATGCCCCTCAG+TGG | - | chr4_1:39160152-39160171 | Msa0546800:intron | 55.0% | |
| !! | ACACACAAGTGGAGGTGCCA+GGG | + | chr4_1:39160827-39160846 | None:intergenic | 55.0% |
| !! | ACCTTAGGTGATGGATGGCG+CGG | + | chr4_1:39161385-39161404 | None:intergenic | 55.0% |
| AAGAAGCTTCCGGGTCGATC+TGG | - | chr4_1:39162033-39162052 | Msa0546800:intron | 55.0% | |
| AGAAGCTTCCGGGTCGATCT+GGG | - | chr4_1:39162034-39162053 | Msa0546800:intron | 55.0% | |
| AAGGCCTGCGACCACAATCT+AGG | + | chr4_1:39162377-39162396 | None:intergenic | 55.0% | |
| ! | GTGAAGAAGTGGAGTGTCCG+GGG | - | chr4_1:39163781-39163800 | Msa0546800:intron | 55.0% |
| CATGACCGGGGTTCAAACCC+TGG | - | chr4_1:39160807-39160826 | Msa0546800:CDS | 60.0% | |
| AGGTGCCAGGGTTTGAACCC+CGG | + | chr4_1:39160815-39160834 | None:intergenic | 60.0% | |
| !! | CACACACAAGTGGAGGTGCC+AGG | + | chr4_1:39160828-39160847 | None:intergenic | 60.0% |
| !! | CCTTAGGTGATGGATGGCGC+GGG | + | chr4_1:39161384-39161403 | None:intergenic | 60.0% |
| AGGCACAAAGGAAGGGGGAG+TGG | - | chr4_1:39163492-39163511 | Msa0546800:intron | 60.0% | |
| GGCACAAAGGAAGGGGGAGT+GGG | - | chr4_1:39163493-39163512 | Msa0546800:intron | 60.0% | |
| CCCGCGCCATCCATCACCTA+AGG | - | chr4_1:39161381-39161400 | Msa0546800:intron | 65.0% | |
| GGGTCGATCCCAGATCGACC+CGG | + | chr4_1:39162045-39162064 | None:intergenic | 65.0% | |
| GCGGCCTAGATTGTGGTCGC+AGG | - | chr4_1:39162370-39162389 | Msa0546800:CDS | 65.0% | |
| AGTGTCCGGGGTTCGAACCC+CGG | - | chr4_1:39163793-39163812 | Msa0546800:intron | 65.0% | |
| GGGTCACGCATAGGCGAGGG+AGG | + | chr4_1:39161364-39161383 | None:intergenic | 70.0% | |
| CGCGGGTCACGCATAGGCGA+GGG | + | chr4_1:39161367-39161386 | None:intergenic | 70.0% | |
| GGATGGCGCGGGTCACGCAT+AGG | + | chr4_1:39161373-39161392 | None:intergenic | 70.0% | |
| AAGGGCCGGGGTTCGAACCC+CGG | + | chr4_1:39163801-39163820 | None:intergenic | 70.0% | |
| GCGCGGGTCACGCATAGGCG+AGG | + | chr4_1:39161368-39161387 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 39158821 | 39165558 | 39158821 | ID=Msa0546800;Name=Msa0546800 |
| chr4_1 | mRNA | 39158821 | 39165558 | 39158821 | ID=Msa0546800-mRNA-1;Parent=Msa0546800;Name=Msa0546800-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0.9|1|1|1|10|196|691 |
| chr4_1 | exon | 39158821 | 39159328 | 39158821 | ID=Msa0546800-mRNA-1:exon:9966;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39160766 | 39160885 | 39160766 | ID=Msa0546800-mRNA-1:exon:9965;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39160981 | 39161070 | 39160981 | ID=Msa0546800-mRNA-1:exon:9964;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39161596 | 39161655 | 39161596 | ID=Msa0546800-mRNA-1:exon:9963;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39161774 | 39161873 | 39161774 | ID=Msa0546800-mRNA-1:exon:9962;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39162131 | 39162570 | 39162131 | ID=Msa0546800-mRNA-1:exon:9961;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39162977 | 39163438 | 39162977 | ID=Msa0546800-mRNA-1:exon:9960;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39163937 | 39164053 | 39163937 | ID=Msa0546800-mRNA-1:exon:9959;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39164824 | 39164874 | 39164824 | ID=Msa0546800-mRNA-1:exon:9958;Parent=Msa0546800-mRNA-1 |
| chr4_1 | exon | 39165235 | 39165558 | 39165235 | ID=Msa0546800-mRNA-1:exon:9957;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39165235 | 39165558 | 39165235 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39164824 | 39164874 | 39164824 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39163937 | 39164053 | 39163937 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39162977 | 39163438 | 39162977 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39162131 | 39162570 | 39162131 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39161774 | 39161873 | 39161774 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39161596 | 39161655 | 39161596 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39160981 | 39161070 | 39160981 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39160766 | 39160885 | 39160766 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | CDS | 39159017 | 39159328 | 39159017 | ID=Msa0546800-mRNA-1:cds;Parent=Msa0546800-mRNA-1 |
| chr4_1 | three_prime_UTR | 39158821 | 39159016 | 39158821 | ID=Msa0546800-mRNA-1:three_prime_utr;Parent=Msa0546800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
