AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348910 MtrunA17_Chr4g0005831 98.744 876 8 1 1 876 1 873 0.0 1778
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348910 AT3G09090.1 70.805 870 228 5 33 876 26 895 0.0 1217
Msa1348910 AT3G09090.3 70.554 849 224 5 33 855 26 874 0.0 1180
Msa1348910 AT3G09090.2 68.930 766 212 5 33 772 26 791 0.0 1030

Find 256 sgRNAs with CRISPR-Local

Find 617 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAAACGTATTATTCTTCT+TGG 0.157043 tig0010575:-5899 Msa1348910:intergenic
ATTAAGAGTAACTACATTTC+TGG 0.158632 tig0010575:-5955 Msa1348910:intergenic
ATTCTTCCATGAGTTATAAA+TGG 0.174312 tig0010575:-12559 Msa1348910:intergenic
GGGTTTCATAAGAACAAATT+AGG 0.174847 tig0010575:-5800 Msa1348910:intergenic
GTTTGGATAAACGGCTTATT+TGG 0.180460 tig0010575:-5523 Msa1348910:intergenic
ATACAGTAACATGAGATTTA+TGG 0.205856 tig0010575:+13998 Msa1348910:three_prime_UTR
CAATCTTCAATCTTTCAATT+TGG 0.207606 tig0010575:+5765 Msa1348910:five_prime_UTR
CAAGAAGAATAATACGTTTC+GGG 0.229674 tig0010575:+5900 Msa1348910:CDS
TTTCTACTTCAATTCTAGTT+AGG 0.231201 tig0010575:+5721 Msa1348910:five_prime_UTR
ATTCTTGTTGGAACTTCTTA+TGG 0.238062 tig0010575:+10908 Msa1348910:CDS
CTTGTTACCTCTTCGTTTGA+TGG 0.250632 tig0010575:+12643 Msa1348910:CDS
TCCCAAATCATATCTCCTTT+GGG 0.256362 tig0010575:-11658 Msa1348910:intergenic
TTCCCAAATCATATCTCCTT+TGG 0.267264 tig0010575:-11659 Msa1348910:intergenic
ATAAGAACAAATTAGGGATT+TGG 0.272337 tig0010575:-5793 Msa1348910:intergenic
GAGCCTGAAAAGAAAATAAA+TGG 0.273112 tig0010575:+8645 Msa1348910:CDS
AATTCGCGATAGTAGCTTCT+TGG 0.273704 tig0010575:-8298 Msa1348910:intergenic
CTTGTTGTACCAACACTATC+TGG 0.277612 tig0010575:+12487 Msa1348910:CDS
GAGCCTGAAAAGAAAGTAAA+TGG 0.282787 tig0010575:+8738 Msa1348910:CDS
CTTCTTGTTCTTCCAATGCT+TGG 0.288511 tig0010575:+13517 Msa1348910:CDS
CCTTGATTGCTGATATTAAC+AGG 0.307509 tig0010575:+6145 Msa1348910:CDS
CTTCCAATGCTTGGGATGTT+TGG 0.309012 tig0010575:+13526 Msa1348910:CDS
TTGGTATGTGGGTTTGAATA+AGG 0.317504 tig0010575:+8229 Msa1348910:CDS
TTCTTGTTCTTCCAATGCTT+GGG 0.326042 tig0010575:+13518 Msa1348910:CDS
TCTGATTACACTACACATAA+AGG 0.333065 tig0010575:-13830 Msa1348910:intergenic
CTGGAAGATAACAACTTAAA+AGG 0.334616 tig0010575:+8876 Msa1348910:CDS
TTTCCACAGGCTCCAACTAT+TGG 0.335598 tig0010575:+12436 Msa1348910:intron
GTGAAGTGATGGGTGCTCTT+TGG 0.339068 tig0010575:-5669 Msa1348910:intergenic
CTCTCTCCTTGGTAATTGCC+AGG 0.340762 tig0010575:-13316 Msa1348910:intergenic
CTTGGATGGTGATGGGTATC+TGG 0.342824 tig0010575:+10883 Msa1348910:CDS
CCAGGAGCATATGAAAGAAT+TGG 0.347380 tig0010575:+10712 Msa1348910:CDS
GTTGTATTGTTAACTAGTTT+TGG 0.348377 tig0010575:+13943 Msa1348910:three_prime_UTR
CCAAGAAGAATAATACGTTT+CGG 0.352140 tig0010575:+5899 Msa1348910:CDS
ACAATTTATAGTAGTGCATA+TGG 0.353288 tig0010575:-13486 Msa1348910:intergenic
GCTTTATTGTTCTCTCTCCT+TGG 0.354570 tig0010575:-13327 Msa1348910:intergenic
AGAATCATTTGTTCAAGCTT+TGG 0.360643 tig0010575:+13749 Msa1348910:three_prime_UTR
AAGGGCAAAATTCCAATATC+AGG 0.365226 tig0010575:-13811 Msa1348910:intergenic
AGGGAAGCATGAGAAATTAG+AGG 0.366054 tig0010575:+9097 Msa1348910:CDS
ATGTTTACCAGGCTGATAAT+AGG 0.371318 tig0010575:-13359 Msa1348910:intergenic
TTCTACTTCAATTCTAGTTA+GGG 0.371411 tig0010575:+5722 Msa1348910:five_prime_UTR
TTGCAACATTATTTCTTCCT+TGG 0.372211 tig0010575:-13036 Msa1348910:intergenic
TTAGGGTATGTTTGGATAAA+CGG 0.375204 tig0010575:-5532 Msa1348910:intergenic
GGTTTCATAAGAACAAATTA+GGG 0.375819 tig0010575:-5799 Msa1348910:intergenic
ATGAACTTCTTCCTTACCTT+TGG 0.376972 tig0010575:-8922 Msa1348910:intergenic
GGGAAGATTCATGTTCTTGA+TGG 0.378492 tig0010575:+12508 Msa1348910:CDS
AGTGAATGAGATCCTGATAT+TGG 0.378778 tig0010575:+13799 Msa1348910:three_prime_UTR
ATAAAATAAAATTGAGTGTT+GGG 0.379310 tig0010575:+5561 Msa1348910:five_prime_UTR
ACATTATTTCTTCCTTGGTT+AGG 0.389436 tig0010575:-13031 Msa1348910:intergenic
AAATAGCACTTCACCATTGT+AGG 0.390827 tig0010575:-8042 Msa1348910:intergenic
TCTTAATACCCTCCTCTGAT+TGG 0.392334 tig0010575:-8764 Msa1348910:intergenic
GGTTATTTGTACCTCATTGA+TGG 0.398016 tig0010575:+12664 Msa1348910:CDS
AAGGACCACAGGAACAGTTT+TGG 0.401580 tig0010575:+13408 Msa1348910:CDS
CCTGTTAATATCAGCAATCA+AGG 0.401995 tig0010575:-6145 Msa1348910:intergenic
TAGCATTGGGAGGCGGCTGC+TGG 0.404393 tig0010575:+8857 Msa1348910:CDS
CCTGAGCTCAATGGTGTGCC+TGG 0.404708 tig0010575:-13639 Msa1348910:intergenic
TGTTAATACTCTCCTCTGAT+TGG 0.405891 tig0010575:-8671 Msa1348910:intergenic
GAAAATGATGGCAATGGCAC+TGG 0.417978 tig0010575:-13577 Msa1348910:intergenic
TTCTTCCATGAGTTATAAAT+GGG 0.418307 tig0010575:-12558 Msa1348910:intergenic
GCAATGGCACTGGGCCTTGT+GGG 0.420539 tig0010575:-13567 Msa1348910:intergenic
GGAAGGGATGGATCACCTAT+TGG 0.420696 tig0010575:+12529 Msa1348910:CDS
ATTTGTTCAAGCTTTGGTTC+AGG 0.421642 tig0010575:+13755 Msa1348910:three_prime_UTR
TTCTCCAACTGTTGTAGACT+TGG 0.422387 tig0010575:+10865 Msa1348910:CDS
TTAAGAGTAACTACATTTCT+GGG 0.425859 tig0010575:-5954 Msa1348910:intergenic
CAGACTTCCTTGCTTGTCCC+TGG 0.428768 tig0010575:+13298 Msa1348910:intron
AGAAAGAGGACGACACCAAT+TGG 0.429768 tig0010575:-5621 Msa1348910:intergenic
TAACTAGAATTGAAGTAGAA+AGG 0.430624 tig0010575:-5719 Msa1348910:intergenic
TTCAAGGTAGTGAACAAAAG+AGG 0.437265 tig0010575:-6621 Msa1348910:intergenic
TAAACAGAAGGAAAAGAAGA+AGG 0.440987 tig0010575:+12612 Msa1348910:CDS
CCAATTCTTTCATATGCTCC+TGG 0.441892 tig0010575:-10712 Msa1348910:intergenic
GGAATCCTCCTCTGCGAAAA+CGG 0.442324 tig0010575:-5878 Msa1348910:intergenic
TTTGTTCAAGCTTTGGTTCA+GGG 0.443656 tig0010575:+13756 Msa1348910:three_prime_UTR
AGCTGCCAACTGTGGGAGTA+AGG 0.450842 tig0010575:+13389 Msa1348910:CDS
ATGCAGATATAGCATGGTCT+TGG 0.451107 tig0010575:+12825 Msa1348910:intron
CACTACCTTGAAGTTCTTGA+GGG 0.452249 tig0010575:+6632 Msa1348910:CDS
TACCAGGCTGATAATAGGTC+TGG 0.454949 tig0010575:-13354 Msa1348910:intergenic
TCAGGATGGGTACGGTCCAC+TGG 0.455155 tig0010575:-8254 Msa1348910:intergenic
GGCAATGGCACTGGGCCTTG+TGG 0.456896 tig0010575:-13568 Msa1348910:intergenic
AACTAGAATTGAAGTAGAAA+GGG 0.458087 tig0010575:-5718 Msa1348910:intergenic
GACATTGGGAAATATGTTGC+TGG 0.458768 tig0010575:+10743 Msa1348910:CDS
AGAGAAGTTCCCTCTTGAAA+TGG 0.464654 tig0010575:+11537 Msa1348910:CDS
CAGGAGCATATGAAAGAATT+GGG 0.467533 tig0010575:+10713 Msa1348910:CDS
CCCAAATCATATCTCCTTTG+GGG 0.469336 tig0010575:-11657 Msa1348910:intergenic
GTTTAGAGATGAAGATGCTT+TGG 0.470437 tig0010575:+6050 Msa1348910:intron
CCCCAAAGGAGATATGATTT+GGG 0.470564 tig0010575:+11657 Msa1348910:CDS
ATAAATGGGTACCGTCCAAT+AGG 0.470788 tig0010575:-12544 Msa1348910:intergenic
CTGATTACACTACACATAAA+GGG 0.470881 tig0010575:-13829 Msa1348910:intergenic
TCTATGTAACTCATCCTTCA+AGG 0.472281 tig0010575:+13080 Msa1348910:CDS
AATAAAATAAAATTGAGTGT+TGG 0.472361 tig0010575:+5560 Msa1348910:five_prime_UTR
AGTTGGTCATCATGAACATC+AGG 0.476688 tig0010575:-8272 Msa1348910:intergenic
CAACTATTGGTGATATCGAC+GGG 0.476817 tig0010575:+12449 Msa1348910:CDS
AGCTTAATTCGATGTTTACC+AGG 0.476834 tig0010575:-13370 Msa1348910:intergenic
TTGAAAATATCCTACCTTGA+GGG 0.477548 tig0010575:-12941 Msa1348910:intergenic
CGGTACCCATTTATAACTCA+TGG 0.479180 tig0010575:+12553 Msa1348910:CDS
TTTGGTTCAGGGATAGTTGA+GGG 0.479347 tig0010575:+13767 Msa1348910:three_prime_UTR
ACATCAAATTGAGTTATCCC+TGG 0.479391 tig0010575:+13680 Msa1348910:three_prime_UTR
CTGTGAATTTAGAGCTAAGA+TGG 0.484697 tig0010575:+6088 Msa1348910:CDS
CGGTGCCCTCAAGAACTTCA+AGG 0.486346 tig0010575:-6637 Msa1348910:intergenic
ATTCTCCTTGTAGAAATGAA+TGG 0.488587 tig0010575:+8546 Msa1348910:intron
TCATCACGGAAAGCCCTTGA+AGG 0.491356 tig0010575:-13094 Msa1348910:intergenic
TACCTCATTGATGGACCTAC+AGG 0.491627 tig0010575:+12673 Msa1348910:CDS
CAATGATGGCGTAATGGAAA+TGG 0.491754 tig0010575:+9288 Msa1348910:CDS
AATTGGGCGATATTGACATT+GGG 0.493358 tig0010575:+10729 Msa1348910:CDS
ATCTGTCAGTGCTGGTTCTG+TGG 0.497253 tig0010575:+8809 Msa1348910:CDS
CATTGTGGGGTGATGAAGAA+TGG 0.497821 tig0010575:+9069 Msa1348910:CDS
CATCTTAGCTCTAAATTCAC+AGG 0.499015 tig0010575:-6087 Msa1348910:intergenic
GCAGACAACAAGACTAGCAT+TGG 0.499136 tig0010575:+8843 Msa1348910:CDS
GAAGAAATAATGTTGCAAAT+CGG 0.499551 tig0010575:+13041 Msa1348910:CDS
GATGATCTAACACATAGAAT+AGG 0.499933 tig0010575:-10931 Msa1348910:intergenic
TTCACATTTCCTGAGCTCAA+TGG 0.500529 tig0010575:-13648 Msa1348910:intergenic
GATAATTATAGATACCCATC+TGG 0.503686 tig0010575:+13154 Msa1348910:CDS
AAACAGAAGGAAAAGAAGAA+GGG 0.505045 tig0010575:+12613 Msa1348910:CDS
ACCGATGGAGACAAAATGCC+AGG 0.507801 tig0010575:+6656 Msa1348910:CDS
CAAAGCTCACTGCGGCACCC+AGG 0.508968 tig0010575:-13698 Msa1348910:intergenic
CTGATTGTCTCGACAATGAA+TGG 0.509054 tig0010575:+12880 Msa1348910:CDS
CATCAAATTGAGTTATCCCT+GGG 0.511777 tig0010575:+13681 Msa1348910:three_prime_UTR
GGTGATGAAGAATGGATTGA+AGG 0.513551 tig0010575:+9077 Msa1348910:CDS
CATGTTCTTGATGGAAGGGA+TGG 0.519262 tig0010575:+12517 Msa1348910:CDS
CTTGTCATCCTTCGCCCACA+AGG 0.519562 tig0010575:+13553 Msa1348910:CDS
GGGTATCTGGACATTCTTGT+TGG 0.523031 tig0010575:+10896 Msa1348910:CDS
AGATTCATGTTCTTGATGGA+AGG 0.524196 tig0010575:+12512 Msa1348910:CDS
TTTAGAGCTAAGATGGCAAA+CGG 0.525130 tig0010575:+6095 Msa1348910:CDS
AACTCTTTCCTTCCTCATCA+CGG 0.525602 tig0010575:-13108 Msa1348910:intergenic
GATAATTCATCTGTCAGTGC+TGG 0.526433 tig0010575:+8801 Msa1348910:CDS
TGAAAATATCCTACCTTGAG+GGG 0.528195 tig0010575:-12940 Msa1348910:intergenic
ACTACTATAAATTGTTGAAG+TGG 0.530048 tig0010575:+13494 Msa1348910:CDS
CCAAATCATATCTCCTTTGG+GGG 0.530327 tig0010575:-11656 Msa1348910:intergenic
GAATTGGGCGATATTGACAT+TGG 0.530810 tig0010575:+10728 Msa1348910:CDS
GCAGCTGATATTAATGATGA+TGG 0.531122 tig0010575:+11583 Msa1348910:CDS
CAAACTAGAATCAAAGAAAG+AGG 0.531657 tig0010575:-5635 Msa1348910:intergenic
TGGGTATCCGAGCGCATCAT+CGG 0.531962 tig0010575:-5935 Msa1348910:intergenic
TCTCTCCTTGGTAATTGCCA+GGG 0.532602 tig0010575:-13315 Msa1348910:intergenic
TATTGACAATGATGGCGTAA+TGG 0.532605 tig0010575:+9282 Msa1348910:CDS
TCGAATTAAGCTGCCAACTG+TGG 0.533264 tig0010575:+13381 Msa1348910:CDS
GATCTGAGTGTGTGAAGTGA+TGG 0.533969 tig0010575:-5680 Msa1348910:intergenic
TCACTACCTTGAAGTTCTTG+AGG 0.536008 tig0010575:+6631 Msa1348910:CDS
TCGTTGTTCCTTGAAAATGA+TGG 0.536141 tig0010575:-13589 Msa1348910:intergenic
TGTGGAAAATGAGGAAGGAC+TGG 0.538615 tig0010575:+8953 Msa1348910:CDS
TGTTGATTTAAGTAAACAGA+AGG 0.539500 tig0010575:+12600 Msa1348910:CDS
TGGCGTGAGAGAAATAGCTT+TGG 0.539702 tig0010575:+8016 Msa1348910:CDS
TCCATGCAACAACATTTCCA+TGG 0.540039 tig0010575:-11633 Msa1348910:intergenic
TGATGGGAAGCTTGACATAG+TGG 0.541378 tig0010575:+6595 Msa1348910:CDS
CCATCCAAGTCTACAACAGT+TGG 0.542560 tig0010575:-10869 Msa1348910:intergenic
CCAGGCACACCATTGAGCTC+AGG 0.544197 tig0010575:+13639 Msa1348910:three_prime_UTR
AGAAGTTCATGCTGCAACTG+TGG 0.544496 tig0010575:+8935 Msa1348910:CDS
TTCAAGGGCTTTCCGTGATG+AGG 0.545086 tig0010575:+13096 Msa1348910:CDS
ATTGCAGATATTGACAATGA+TGG 0.545159 tig0010575:+9274 Msa1348910:CDS
AATATCCTACCTTGAGGGGA+TGG 0.546249 tig0010575:-12936 Msa1348910:intergenic
CCGTCGATATCACCAATAGT+TGG 0.547051 tig0010575:-12448 Msa1348910:intergenic
GAAGTTCTTGAGGGCACCGA+TGG 0.547844 tig0010575:+6641 Msa1348910:CDS
GACTAGAATGCACAGTCGAT+TGG 0.548673 tig0010575:-7968 Msa1348910:intergenic
GCACTGGGCCTTGTGGGCGA+AGG 0.550344 tig0010575:-13561 Msa1348910:intergenic
TTCTGTTGATGTGGAAGCTG+AGG 0.550577 tig0010575:-8589 Msa1348910:intergenic
ACAGTCGATTGGTGGAAAGC+AGG 0.553340 tig0010575:-7957 Msa1348910:intergenic
GTCTTGGCAGACAATGTAGA+TGG 0.554460 tig0010575:+12841 Msa1348910:CDS
AACAACACCTGCTTGAATCT+CGG 0.554490 tig0010575:-11560 Msa1348910:intergenic
AACCAGACCTATTATCAGCC+TGG 0.554997 tig0010575:+13352 Msa1348910:CDS
TGCTGCAACTGTGGAAAATG+AGG 0.555327 tig0010575:+8944 Msa1348910:CDS
TTGTTGTACCAACACTATCT+GGG 0.556727 tig0010575:+12488 Msa1348910:CDS
GATTCATGTTCTTGATGGAA+GGG 0.557088 tig0010575:+12513 Msa1348910:CDS
TGGTTCTGAATCCAAAGGTA+AGG 0.557327 tig0010575:+8911 Msa1348910:CDS
TTATGTTGATGAATCATTGT+GGG 0.557727 tig0010575:+9055 Msa1348910:CDS
TAGTAGCTTCTTGGACAAGT+TGG 0.558204 tig0010575:-8289 Msa1348910:intergenic
CCAACTGTTGTAGACTTGGA+TGG 0.558571 tig0010575:+10869 Msa1348910:CDS
TTCTATGTGTTAGATCATCA+TGG 0.558711 tig0010575:+10935 Msa1348910:CDS
CGAATTAAGCTGCCAACTGT+GGG 0.559486 tig0010575:+13382 Msa1348910:CDS
CTTGTCTGACATGATATAGC+CGG 0.560084 tig0010575:-8174 Msa1348910:intergenic
TTGAGGGGATGGTGAGGTGA+GGG 0.560431 tig0010575:-12925 Msa1348910:intergenic
CATAGTTGTACTCATCAGCC+AGG 0.561836 tig0010575:-9022 Msa1348910:intergenic
TGGCAGACAATGTAGATGGT+GGG 0.562085 tig0010575:+12845 Msa1348910:CDS
AGATACCCATCTGGTCATCA+AGG 0.562292 tig0010575:+13163 Msa1348910:CDS
CATCAAACGAAGAGGTAACA+AGG 0.562691 tig0010575:-12642 Msa1348910:intergenic
AGGGTGACTTTCTGTTGATG+TGG 0.570303 tig0010575:-8598 Msa1348910:intergenic
ATTATGTTGATGAATCATTG+TGG 0.571019 tig0010575:+9054 Msa1348910:CDS
TTGTCTATGTCATATAGAAG+TGG 0.571149 tig0010575:-7990 Msa1348910:intergenic
TGTGCTGATGTTGTTGACAT+TGG 0.572184 tig0010575:+12697 Msa1348910:CDS
CTTTGATCACGTAGTCAAAG+TGG 0.572192 tig0010575:+13716 Msa1348910:three_prime_UTR
ATCTGAGTGTGTGAAGTGAT+GGG 0.572297 tig0010575:-5679 Msa1348910:intergenic
TAGAATGCACAGTCGATTGG+TGG 0.572725 tig0010575:-7965 Msa1348910:intergenic
CAGACAACAAGACTAGCATT+GGG 0.573562 tig0010575:+8844 Msa1348910:CDS
AAAATGATGGCAATGGCACT+GGG 0.576438 tig0010575:-13576 Msa1348910:intergenic
CTTTGGTTCAGGGATAGTTG+AGG 0.576905 tig0010575:+13766 Msa1348910:three_prime_UTR
ATCACTTCACACACTCAGAT+CGG 0.577047 tig0010575:+5682 Msa1348910:five_prime_UTR
GTGATGAAGAATGGATTGAA+GGG 0.577077 tig0010575:+9078 Msa1348910:CDS
GAACTTACAGTGACATGGTA+TGG 0.578989 tig0010575:-13187 Msa1348910:intergenic
ACACCAAACATCCCAAGCAT+TGG 0.580558 tig0010575:-13529 Msa1348910:intergenic
GATGAATTATCAGCAACTGT+TGG 0.581842 tig0010575:-8789 Msa1348910:intergenic
TTAAAAGGAGCTGAGCAAGT+TGG 0.583630 tig0010575:+8891 Msa1348910:CDS
AGGGCTTTCCGTGATGAGGA+AGG 0.583864 tig0010575:+13100 Msa1348910:CDS
TGAATCTCGGCCATTTCAAG+AGG 0.584486 tig0010575:-11547 Msa1348910:intergenic
CCAACTATTGGTGATATCGA+CGG 0.586361 tig0010575:+12448 Msa1348910:CDS
CTAGTTACTGCTGATACCCA+TGG 0.586395 tig0010575:+11616 Msa1348910:CDS
CTATATGACATAGACAAAGA+TGG 0.586706 tig0010575:+7996 Msa1348910:CDS
GTGGTCCTTACTCCCACAGT+TGG 0.587468 tig0010575:-13394 Msa1348910:intergenic
CTCGACCAAAACTGTTCCTG+TGG 0.591060 tig0010575:-13413 Msa1348910:intergenic
TCAAGGTAGTGAACAAAAGA+GGG 0.591437 tig0010575:-6620 Msa1348910:intergenic
ATTGGTGATATCGACGGGGA+TGG 0.591949 tig0010575:+12454 Msa1348910:CDS
AAAGCTCACTGCGGCACCCA+GGG 0.595695 tig0010575:-13697 Msa1348910:intergenic
ATAGCTTTGGCAACCTACAA+TGG 0.596273 tig0010575:+8029 Msa1348910:CDS
CCATGCAACAACATTTCCAT+GGG 0.597707 tig0010575:-11632 Msa1348910:intergenic
AGTAAATGGAAGCCAATCAG+AGG 0.598162 tig0010575:+8752 Msa1348910:CDS
CTATGTAACTCATCCTTCAA+GGG 0.598298 tig0010575:+13081 Msa1348910:CDS
CTTGAGGGGATGGTGAGGTG+AGG 0.598439 tig0010575:-12926 Msa1348910:intergenic
GTTGTAGACTTGGATGGTGA+TGG 0.598690 tig0010575:+10875 Msa1348910:CDS
GGTCATCATGAACATCAGGA+TGG 0.599779 tig0010575:-8268 Msa1348910:intergenic
GAGAAGAATATACGTACGCT+CGG 0.600163 tig0010575:-10847 Msa1348910:intergenic
CATGAACATCAGGATGGGTA+CGG 0.601250 tig0010575:-8262 Msa1348910:intergenic
GCAAATCGGTACGGTCGTGA+AGG 0.603856 tig0010575:+13055 Msa1348910:CDS
AAATGGAAGCCAATCAGAGG+AGG 0.604090 tig0010575:+8755 Msa1348910:CDS
ACTGTGGGAGTAAGGACCAC+AGG 0.604153 tig0010575:+13397 Msa1348910:CDS
CTGAGGAATTAACTTCGTGT+CGG 0.604187 tig0010575:-8572 Msa1348910:intergenic
TTGGCAGACAATGTAGATGG+TGG 0.604254 tig0010575:+12844 Msa1348910:CDS
CCCATGGAAATGTTGTTGCA+TGG 0.605735 tig0010575:+11632 Msa1348910:CDS
CTCACCTCACCATCCCCTCA+AGG 0.605790 tig0010575:+12927 Msa1348910:CDS
TGGACACAAAACAAGTCAAG+TGG 0.612073 tig0010575:+10786 Msa1348910:CDS
ATTCCGCAATAGTGATGACC+TGG 0.612503 tig0010575:+9004 Msa1348910:CDS
TTGGTTTCAACTTTACGATG+TGG 0.614299 tig0010575:+13962 Msa1348910:three_prime_UTR
GAAATGGCCGAGATTCAAGC+AGG 0.614578 tig0010575:+11553 Msa1348910:CDS
GTCATCATGAACATCAGGAT+GGG 0.614968 tig0010575:-8267 Msa1348910:intergenic
TTCCTTGAAAATGATGGCAA+TGG 0.615790 tig0010575:-13583 Msa1348910:intergenic
ACAAGACTAGCATTGGGAGG+CGG 0.615861 tig0010575:+8850 Msa1348910:CDS
GAAGCCACCGATGATGCGCT+CGG 0.617757 tig0010575:+5928 Msa1348910:CDS
CTGTTAATATCAGCAATCAA+GGG 0.618771 tig0010575:-6144 Msa1348910:intergenic
CAGCCAGGTCATCACTATTG+CGG 0.618967 tig0010575:-9007 Msa1348910:intergenic
GCAACTGTGGAAAATGAGGA+AGG 0.620753 tig0010575:+8948 Msa1348910:CDS
TTGGTACAACAAGCTCAGTA+CGG 0.621516 tig0010575:-12477 Msa1348910:intergenic
CTTGTCCCTGGCAATTACCA+AGG 0.622404 tig0010575:+13310 Msa1348910:CDS
TTGTAGACTTGGATGGTGAT+GGG 0.625613 tig0010575:+10876 Msa1348910:CDS
CAAATAACCATCAAACGAAG+AGG 0.628486 tig0010575:-12650 Msa1348910:intergenic
AATAATGTTGCAAATCGGTA+CGG 0.629908 tig0010575:+13046 Msa1348910:CDS
TATGGTCCTTGATGACCAGA+TGG 0.631810 tig0010575:-13169 Msa1348910:intergenic
AATAAATGGAAGCCAATCAG+AGG 0.633557 tig0010575:+8659 Msa1348910:CDS
GGCAGACAATGTAGATGGTG+GGG 0.633931 tig0010575:+12846 Msa1348910:CDS
GGGTTTGAATAAGGATCCAG+TGG 0.638731 tig0010575:+8238 Msa1348910:CDS
TGAATCTTCCCAGATAGTGT+TGG 0.640555 tig0010575:-12496 Msa1348910:intergenic
GGGATGGATCACCTATTGGA+CGG 0.641758 tig0010575:+12533 Msa1348910:CDS
GTAATTGCCAGGGACAAGCA+AGG 0.643916 tig0010575:-13305 Msa1348910:intergenic
CCTACCTTGAGGGGATGGTG+AGG 0.643978 tig0010575:-12931 Msa1348910:intergenic
GTATCCGAGCGCATCATCGG+TGG 0.645748 tig0010575:-5932 Msa1348910:intergenic
GATGGGAACTTACAGTGACA+TGG 0.645843 tig0010575:-13192 Msa1348910:intergenic
GAATCTCGGCCATTTCAAGA+GGG 0.650459 tig0010575:-11546 Msa1348910:intergenic
CAAGTTGGTTCTGAATCCAA+AGG 0.652708 tig0010575:+8906 Msa1348910:CDS
AGCCTGTAGGTCCATCAATG+AGG 0.655462 tig0010575:-12675 Msa1348910:intergenic
GTAGGAGGAACTAACAGGAG+TGG 0.657581 tig0010575:-9150 Msa1348910:intergenic
GCATGGAGATTGCCTAACCA+AGG 0.658526 tig0010575:+13019 Msa1348910:CDS
ATCCTCCTCTGCGAAAACGG+AGG 0.659787 tig0010575:-5875 Msa1348910:intergenic
AATGGAAGCCAATCAGAGGA+GGG 0.664074 tig0010575:+8756 Msa1348910:CDS
TGACAGGTATTATGACAACC+AGG 0.671120 tig0010575:+10694 Msa1348910:intron
TATGTTGATGAATCATTGTG+GGG 0.671873 tig0010575:+9056 Msa1348910:CDS
ATGGTCCTTGATGACCAGAT+GGG 0.674700 tig0010575:-13168 Msa1348910:intergenic
TATCATGTCAGACAAGCTTG+AGG 0.681103 tig0010575:+8181 Msa1348910:CDS
ACAACATCAGCACAGCCTGT+AGG 0.681376 tig0010575:-12688 Msa1348910:intergenic
ACAACAAGACTAGCATTGGG+AGG 0.681724 tig0010575:+8847 Msa1348910:CDS
ATCAAACGAAGAGGTAACAA+GGG 0.688966 tig0010575:-12641 Msa1348910:intergenic
AACTATTGGTGATATCGACG+GGG 0.720915 tig0010575:+12450 Msa1348910:CDS
ATTGGGAAATATGTTGCTGG+TGG 0.740662 tig0010575:+10746 Msa1348910:CDS
TACGTGATCAAAGCTCACTG+CGG 0.755579 tig0010575:-13706 Msa1348910:intergenic
ACAAGCTTGAGGTCCCACGT+AGG 0.760693 tig0010575:+8192 Msa1348910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAAATAAAATTAAA+AGG - tig0010575:9177-9196 Msa1348910:intergenic 0.0%
!!! TTTTATTTTATTTTTGGTTA+GGG - tig0010575:5552-5571 Msa0693590:intergenic 10.0%
!!! ATTTTATTTTATTTTTGGTT+AGG - tig0010575:5553-5572 Msa0693590:intergenic 10.0%
!!! ACTCAATTTTATTTTATTTT+TGG - tig0010575:5558-5577 Msa0693590:intergenic 10.0%
!!! TAATTTTCTCAAATTATTAT+CGG - tig0010575:6232-6251 Msa1348910:intergenic 10.0%
!!! TTGAAATTTTTAGTAAATAT+TGG - tig0010575:6997-7016 Msa1348910:intergenic 10.0%
!!! TATTTTTATTAGCATATTTA+GGG - tig0010575:7488-7507 Msa1348910:intergenic 10.0%
!!! TTAATAATATTTTCTATAAG+AGG + tig0010575:10103-10122 Msa1348910:intron 10.0%
!!! AATCAAATATATATTTTCTT+TGG + tig0010575:11464-11483 Msa1348910:intron 10.0%
!! AATAAAATAAAATTGAGTGT+TGG + tig0010575:5560-5579 Msa1348910:five_prime_UTR 15.0%
!! ATAAAATAAAATTGAGTGTT+GGG + tig0010575:5561-5580 Msa1348910:five_prime_UTR 15.0%
!!! TTTTTTTTTGACTTTTTGAT+TGG + tig0010575:6014-6033 Msa1348910:intron 15.0%
!!! AAAACAGTGAATTTATTTTA+TGG - tig0010575:6301-6320 Msa1348910:intergenic 15.0%
!!! ATCATTAATACTTTTTTGAA+GGG - tig0010575:6404-6423 Msa1348910:intergenic 15.0%
!!! TATCATTAATACTTTTTTGA+AGG - tig0010575:6405-6424 Msa1348910:intergenic 15.0%
!! AAGTATTAATGATAAAGTTA+AGG + tig0010575:6411-6430 Msa1348910:intron 15.0%
!! AGTATTAATGATAAAGTTAA+GGG + tig0010575:6412-6431 Msa1348910:intron 15.0%
!!! GTATTTTTATTAGCATATTT+AGG - tig0010575:7489-7508 Msa1348910:intergenic 15.0%
!!! TACAATGATTTTTCATTTTT+AGG + tig0010575:8147-8166 Msa1348910:intron 15.0%
!!! ACAATGATTTTTCATTTTTA+GGG + tig0010575:8148-8167 Msa1348910:intron 15.0%
!!! ATCTAATCTAATTTTATCTT+TGG + tig0010575:8517-8536 Msa1348910:intron 15.0%
!!! TCTAATCTAATTTTATCTTT+GGG + tig0010575:8518-8537 Msa1348910:intron 15.0%
!!! AAAATAAAATTAAAAGGTGT+AGG - tig0010575:9171-9190 Msa1348910:intergenic 15.0%
!!! ATATGATTTTTGACAATTAT+TGG + tig0010575:10609-10628 Msa1348910:intron 15.0%
!!! TTTTAAGTTATTTTGTATAG+AGG + tig0010575:11156-11175 Msa1348910:intron 15.0%
!! GCATAAATAAAATTCTAATA+GGG - tig0010575:11239-11258 Msa1348910:intergenic 15.0%
!! AGCATAAATAAAATTCTAAT+AGG - tig0010575:11240-11259 Msa1348910:intergenic 15.0%
!!! TTTTTTTTATAAGCTCAATT+AGG + tig0010575:11353-11372 Msa1348910:intron 15.0%
!!! TTTTTTTATAAGCTCAATTA+GGG + tig0010575:11354-11373 Msa1348910:intron 15.0%
!! TATGATTCACAAAAAAAAAA+AGG - tig0010575:11380-11399 Msa1348910:intergenic 15.0%
!!! TTTTTTTGTGAATCATAATT+AGG + tig0010575:11383-11402 Msa1348910:intron 15.0%
!!! TTTTTTGTGAATCATAATTA+GGG + tig0010575:11384-11403 Msa1348910:intron 15.0%
!!! GTTTAATAGCATTTTTAAAT+TGG + tig0010575:11813-11832 Msa1348910:intron 15.0%
!!! AAAATCGATTTATAAGATTA+GGG + tig0010575:11888-11907 Msa1348910:intron 15.0%
!!! AAATTCACTGTTTTGAATAT+AGG + tig0010575:6307-6326 Msa1348910:intron 20.0%
!!! AATTCACTGTTTTGAATATA+GGG + tig0010575:6308-6327 Msa1348910:intron 20.0%
!!! ACATCAATTGTTTTGAAATA+AGG + tig0010575:6348-6367 Msa1348910:intron 20.0%
!!! CATCAATTGTTTTGAAATAA+GGG + tig0010575:6349-6368 Msa1348910:intron 20.0%
!!! TGGTATATGTATACATTTTT+AGG + tig0010575:6440-6459 Msa1348910:intron 20.0%
!! GTTGTGATATATATAAAGAA+GGG + tig0010575:7350-7369 Msa1348910:intron 20.0%
!! TTGTGATATATATAAAGAAG+GGG + tig0010575:7351-7370 Msa1348910:intron 20.0%
!! AAATACCAGTTTCTATTAAT+TGG + tig0010575:7503-7522 Msa1348910:intron 20.0%
!!! TTCTTGTTTTTTTTTTGAGA+GGG - tig0010575:7617-7636 Msa1348910:intergenic 20.0%
!!! ATTCTTGTTTTTTTTTTGAG+AGG - tig0010575:7618-7637 Msa1348910:intergenic 20.0%
!! CAAAAAAAAAACAAGAATGA+AGG + tig0010575:7620-7639 Msa1348910:intron 20.0%
!! TTGTAAATGGAAGAAAAATT+TGG - tig0010575:8091-8110 Msa1348910:intergenic 20.0%
!! GTGTAGATAATGAAAATATA+AGG - tig0010575:8395-8414 Msa1348910:intergenic 20.0%
!! AATTTACAGTTTATCAATTC+TGG + tig0010575:9194-9213 Msa1348910:intron 20.0%
!! AAGTTGAGCTTAAAAAATAT+TGG + tig0010575:9608-9627 Msa1348910:intron 20.0%
!! ATTAAAAACAGATGAAAGAA+AGG + tig0010575:9727-9746 Msa1348910:intron 20.0%
!!! TTTTCTTTTTTTGGTTGAAT+TGG + tig0010575:9831-9850 Msa1348910:intron 20.0%
!!! AGAAATTTTTTTAGAGAACT+GGG - tig0010575:9859-9878 Msa1348910:intergenic 20.0%
!! GTCTTCAATGAAAAAATAAA+AGG + tig0010575:10360-10379 Msa1348910:intron 20.0%
!! CTTTAAATAAAATACTTCAC+TGG - tig0010575:10472-10491 Msa1348910:intergenic 20.0%
!! CATCAAAAAATTTCAAAAAC+AGG - tig0010575:10548-10567 Msa1348910:intergenic 20.0%
!!! TTGAAATTTTTTGATGCATT+AGG + tig0010575:10552-10571 Msa1348910:intron 20.0%
!!! TTTTTTAATATGCTTCTATG+AGG + tig0010575:11006-11025 Msa1348910:intron 20.0%
!! CTTAAAACAGTAAATTGTAA+TGG - tig0010575:11143-11162 Msa1348910:intergenic 20.0%
!!! ATTGATAATGATGAAACTTA+GGG - tig0010575:11188-11207 Msa1348910:intergenic 20.0%
!!! TATTGATAATGATGAAACTT+AGG - tig0010575:11189-11208 Msa1348910:intergenic 20.0%
!!! TTTTTGTGAATCATAATTAG+GGG + tig0010575:11385-11404 Msa1348910:intron 20.0%
!!! TTTTTTTTTCTTCCTCAAAT+AGG + tig0010575:11505-11524 Msa1348910:intron 20.0%
!!! ATAGCATTTTTAAATTGGTT+TGG + tig0010575:11818-11837 Msa1348910:intron 20.0%
!!! TAGCATTTTTAAATTGGTTT+GGG + tig0010575:11819-11838 Msa1348910:intron 20.0%
!!! ATCTTATAAATCGATTTTGT+AGG - tig0010575:11886-11905 Msa1348910:intergenic 20.0%
!!! CAAAATCGATTTATAAGATT+AGG + tig0010575:11887-11906 Msa1348910:intron 20.0%
!! TAAAATTATTATTTAAGCCC+TGG - tig0010575:12052-12071 Msa1348910:intergenic 20.0%
!! AACAGAATTAAAATGAAAAC+TGG - tig0010575:12185-12204 Msa1348910:intergenic 20.0%
! AACTAGAATTGAAGTAGAAA+GGG - tig0010575:5721-5740 Msa1348910:intergenic 25.0%
! TAACTAGAATTGAAGTAGAA+AGG - tig0010575:5722-5741 Msa1348910:intergenic 25.0%
!! TTTCTACTTCAATTCTAGTT+AGG + tig0010575:5721-5740 Msa1348910:five_prime_UTR 25.0%
!! TTCTACTTCAATTCTAGTTA+GGG + tig0010575:5722-5741 Msa1348910:five_prime_UTR 25.0%
! CAATCTTCAATCTTTCAATT+TGG + tig0010575:5765-5784 Msa1348910:five_prime_UTR 25.0%
! ATAAGAACAAATTAGGGATT+TGG - tig0010575:5796-5815 Msa1348910:intergenic 25.0%
! GGTTTCATAAGAACAAATTA+GGG - tig0010575:5802-5821 Msa1348910:intergenic 25.0%
!!! AGAACTTTTTTGGATGAAAA+GGG - tig0010575:5823-5842 Msa1348910:intergenic 25.0%
!!! AAGAACTTTTTTGGATGAAA+AGG - tig0010575:5824-5843 Msa1348910:intergenic 25.0%
!!! GAGAAAAAGAAGAACTTTTT+TGG - tig0010575:5833-5852 Msa1348910:intergenic 25.0%
! TTAAGAGTAACTACATTTCT+GGG - tig0010575:5957-5976 Msa1348910:intergenic 25.0%
! ATTAAGAGTAACTACATTTC+TGG - tig0010575:5958-5977 Msa1348910:intergenic 25.0%
! TTGTGTATTTGTTTGTCTAA+TGG + tig0010575:6184-6203 Msa1348910:intron 25.0%
! ACAATTGATGTATGTTTGTA+TGG - tig0010575:6339-6358 Msa1348910:intergenic 25.0%
!!! TGATAAAGTTAAGGGTATTT+TGG + tig0010575:6420-6439 Msa1348910:intron 25.0%
!!! TTCTTTTCTTTGGTAGTTTA+AGG - tig0010575:6495-6514 Msa1348910:intergenic 25.0%
! TACCAAAGAAAAGAAATGTA+GGG + tig0010575:6500-6519 Msa1348910:intron 25.0%
!!! AAATCACTGCAATTTTGTTT+TGG + tig0010575:6569-6588 Msa1348910:intron 25.0%
!!! TTTTTGTTGTAGCTATATTG+TGG + tig0010575:6763-6782 Msa1348910:intron 25.0%
! TAGATTAAGACAGAATTTAG+AGG + tig0010575:6836-6855 Msa1348910:intron 25.0%
! AGATTAAGACAGAATTTAGA+GGG + tig0010575:6837-6856 Msa1348910:intron 25.0%
!!! TGTTTTTTGTTTTTCACACA+TGG + tig0010575:7136-7155 Msa1348910:intron 25.0%
!!! GTTTTTTGTTTTTCACACAT+GGG + tig0010575:7137-7156 Msa1348910:intron 25.0%
! GATACTAGTCATGTAAAATT+TGG + tig0010575:7244-7263 Msa1348910:intron 25.0%
!! TCATGTAAAATTTGGCTTAA+AGG + tig0010575:7252-7271 Msa1348910:intron 25.0%
! TGATGTAGATAAAGTCATAA+AGG + tig0010575:7322-7341 Msa1348910:intron 25.0%
! GATGTAGATAAAGTCATAAA+GGG + tig0010575:7323-7342 Msa1348910:intron 25.0%
! GGTTGTGATATATATAAAGA+AGG + tig0010575:7349-7368 Msa1348910:intron 25.0%
! TGATACCAATTAATAGAAAC+TGG - tig0010575:7511-7530 Msa1348910:intergenic 25.0%
!!! TTTTTTTTTTGAGAGGGAAA+AGG - tig0010575:7611-7630 Msa1348910:intergenic 25.0%
!!! AACTTATCTATAGTTCTGAA+TGG + tig0010575:7742-7761 Msa1348910:intron 25.0%
! GATGTTATATTGTTACGAAA+GGG + tig0010575:7783-7802 Msa1348910:intron 25.0%
! CATTAAAAACCCATTTACAT+TGG - tig0010575:7823-7842 Msa1348910:intergenic 25.0%
! ATTCAAATCATTCTTCTTCT+TGG + tig0010575:7921-7940 Msa1348910:intron 25.0%
!!! ATTCTTCTTCTTGGTTTTTT+AGG + tig0010575:7930-7949 Msa1348910:intron 25.0%
!! AGCAATGGATAATTTGTAAA+TGG - tig0010575:8104-8123 Msa1348910:intergenic 25.0%
!!! TTTTTCATTTTTAGGGTTTC+CGG + tig0010575:8155-8174 Msa1348910:intron 25.0%
! ATTGTTGGATATAAGCATAT+AGG + tig0010575:8361-8380 Msa1348910:intron 25.0%
!! AATAAAACAGCTTTTAACAG+AGG + tig0010575:8415-8434 Msa1348910:intron 25.0%
!!! CTTCCATTTATTTTCTTTTC+AGG - tig0010575:8651-8670 Msa1348910:intergenic 25.0%
!!! TAGACACATTTTTTGTATCA+GGG - tig0010575:8713-8732 Msa1348910:intergenic 25.0%
!!! TTAGACACATTTTTTGTATC+AGG - tig0010575:8714-8733 Msa1348910:intergenic 25.0%
!! ATTATGTTGATGAATCATTG+TGG + tig0010575:9054-9073 Msa1348910:CDS 25.0%
!! TTATGTTGATGAATCATTGT+GGG + tig0010575:9055-9074 Msa1348910:CDS 25.0%
!! ATAAAATTAAAAGGTGTAGG+AGG - tig0010575:9168-9187 Msa1348910:intergenic 25.0%
! ATAGTCATAGTTATGTGAAT+AGG + tig0010575:9425-9444 Msa1348910:intron 25.0%
! ATAATGAACCCAACAAAAAT+AGG + tig0010575:9506-9525 Msa1348910:intron 25.0%
!!! TCCTATATCCTATTTTTGTT+GGG - tig0010575:9517-9536 Msa1348910:intergenic 25.0%
!!! TTCCTATATCCTATTTTTGT+TGG - tig0010575:9518-9537 Msa1348910:intergenic 25.0%
! TAATTACTTCAAACGAAACA+AGG + tig0010575:9548-9567 Msa1348910:intron 25.0%
! TTTAAGCTCAACTTGAATAT+TGG - tig0010575:9602-9621 Msa1348910:intergenic 25.0%
!!! CAGAAATTTTTTTAGAGAAC+TGG - tig0010575:9860-9879 Msa1348910:intergenic 25.0%
! ATTGCAATTAATAGAAGGAA+TGG - tig0010575:10172-10191 Msa1348910:intergenic 25.0%
! GTTTGATTGCAATTAATAGA+AGG - tig0010575:10177-10196 Msa1348910:intergenic 25.0%
! AATCCTTTGTGTAAAAGATT+GGG - tig0010575:10204-10223 Msa1348910:intergenic 25.0%
!!! TTATTTTTTCATTGAAGACC+AGG - tig0010575:10359-10378 Msa1348910:intergenic 25.0%
! ATGAGTATTTGTCAATTTAG+TGG + tig0010575:10644-10663 Msa1348910:intron 25.0%
!!! TGGTATTGTTGTTTTTAATC+TGG + tig0010575:10766-10785 Msa1348910:CDS 25.0%
! TAAATTGTAATGGTTGGAAA+TGG - tig0010575:11133-11152 Msa1348910:intergenic 25.0%
! AAACAGTAAATTGTAATGGT+TGG - tig0010575:11139-11158 Msa1348910:intergenic 25.0%
!!! ATAATTAGGGGTTTTAAGTA+GGG + tig0010575:11397-11416 Msa1348910:intron 25.0%
!!! TATAATGGATACTAGTGAAA+AGG + tig0010575:11979-11998 Msa1348910:intron 25.0%
! TATTTCTTTCAAAAACCTGT+TGG - tig0010575:12094-12113 Msa1348910:intergenic 25.0%
! ATAATCAACATATGCTTCAT+AGG + tig0010575:12280-12299 Msa1348910:intron 25.0%
!! AATTTAGAAGACATTGACTA+AGG - tig0010575:12413-12432 Msa1348910:intergenic 25.0%
!! CTTCTAAATTAATTTTCCAC+AGG + tig0010575:12423-12442 Msa1348910:intron 25.0%
! TTCTTCCATGAGTTATAAAT+GGG - tig0010575:12561-12580 Msa1348910:intergenic 25.0%
! ATTCTTCCATGAGTTATAAA+TGG - tig0010575:12562-12581 Msa1348910:intergenic 25.0%
!!! TGTTGATTTAAGTAAACAGA+AGG + tig0010575:12600-12619 Msa1348910:CDS 25.0%
! TTCATGAAAGAAAGAAACAA+AGG - tig0010575:12755-12774 Msa1348910:intergenic 25.0%
!!! TTTTTTATGCAGATATAGCA+TGG + tig0010575:12819-12838 Msa1348910:intron 25.0%
! GAAGAAATAATGTTGCAAAT+CGG + tig0010575:13041-13060 Msa1348910:CDS 25.0%
! ATTAGAGATCGAAAGTAATT+TGG - tig0010575:13217-13236 Msa1348910:intergenic 25.0%
! ACAATTTATAGTAGTGCATA+TGG - tig0010575:13489-13508 Msa1348910:intergenic 25.0%
! ACTACTATAAATTGTTGAAG+TGG + tig0010575:13494-13513 Msa1348910:CDS 25.0%
!!! GTTGTATTGTTAACTAGTTT+TGG + tig0010575:13943-13962 Msa1348910:three_prime_UTR 25.0%
! ATACAGTAACATGAGATTTA+TGG + tig0010575:13998-14017 Msa1348910:three_prime_UTR 25.0%
TTAGGGTATGTTTGGATAAA+CGG - tig0010575:5535-5554 Msa0693590:intergenic 30.0%
!!! ATTTTTGGTTAGGGTATGTT+TGG - tig0010575:5543-5562 Msa0693590:intergenic 30.0%
CAAACTAGAATCAAAGAAAG+AGG - tig0010575:5638-5657 Msa1348910:intergenic 30.0%
GGGTTTCATAAGAACAAATT+AGG - tig0010575:5803-5822 Msa1348910:intergenic 30.0%
CCAAGAAGAATAATACGTTT+CGG + tig0010575:5899-5918 Msa1348910:CDS 30.0%
CAAGAAGAATAATACGTTTC+GGG + tig0010575:5900-5919 Msa1348910:CDS 30.0%
CTGTTAATATCAGCAATCAA+GGG - tig0010575:6147-6166 Msa1348910:intergenic 30.0%
!!! CAGTGAATTTATTTTATGGC+AGG - tig0010575:6297-6316 Msa1348910:intergenic 30.0%
!!! TTTTTTGAAGGGTTTTGAAG+GGG - tig0010575:6393-6412 Msa1348910:intergenic 30.0%
!!! CTTTTTTGAAGGGTTTTGAA+GGG - tig0010575:6394-6413 Msa1348910:intergenic 30.0%
!!! ACTTTTTTGAAGGGTTTTGA+AGG - tig0010575:6395-6414 Msa1348910:intergenic 30.0%
CTACCAAAGAAAAGAAATGT+AGG + tig0010575:6499-6518 Msa1348910:intron 30.0%
!!! AATTTTGTTTTGGCAGTGAT+GGG + tig0010575:6579-6598 Msa1348910:intron 30.0%
ACAAAAATATCATCAGGACA+AGG - tig0010575:6750-6769 Msa1348910:intergenic 30.0%
GCTACAACAAAAATATCATC+AGG - tig0010575:6756-6775 Msa1348910:intergenic 30.0%
AAGAACACTAAGTTACTAAC+TGG + tig0010575:6891-6910 Msa1348910:intron 30.0%
AACACGAATCGATAATATGA+CGG - tig0010575:7182-7201 Msa1348910:intergenic 30.0%
AGATAAAGTCATAAAGGGTT+AGG + tig0010575:7328-7347 Msa1348910:intron 30.0%
GATATATATAAAGAAGGGGA+AGG + tig0010575:7355-7374 Msa1348910:intron 30.0%
ATTAATTGGTATCAGATCTC+TGG + tig0010575:7517-7536 Msa1348910:intron 30.0%
TTCTTGTTGAATATGAACAG+CGG - tig0010575:7582-7601 Msa1348910:intergenic 30.0%
TCTCCAAGAATGATAAGAAT+GGG - tig0010575:7648-7667 Msa1348910:intergenic 30.0%
TTCTCCAAGAATGATAAGAA+TGG - tig0010575:7649-7668 Msa1348910:intergenic 30.0%
TTCTTATCATTCTTGGAGAA+TGG + tig0010575:7649-7668 Msa1348910:intron 30.0%
CTAAAAATCCCAATCTTTGA+CGG + tig0010575:7713-7732 Msa1348910:intron 30.0%
GGATGTTATATTGTTACGAA+AGG + tig0010575:7782-7801 Msa1348910:intron 30.0%
TTGTCTATGTCATATAGAAG+TGG - tig0010575:7993-8012 Msa1348910:intergenic 30.0%
CTATATGACATAGACAAAGA+TGG + tig0010575:7996-8015 Msa1348910:CDS 30.0%
ACAAATTATCCATTGCTTTG+AGG + tig0010575:8107-8126 Msa1348910:intron 30.0%
AATAAAACACCTCAAAGCAA+TGG - tig0010575:8119-8138 Msa1348910:intergenic 30.0%
!!! TGCTTTGAGGTGTTTTATTA+AGG + tig0010575:8120-8139 Msa1348910:intron 30.0%
!! GTAGGAAAGTGCTTAAAAAT+TGG + tig0010575:8210-8229 Msa1348910:CDS 30.0%
AGTGCTTAAAAATTGGTATG+TGG + tig0010575:8217-8236 Msa1348910:CDS 30.0%
GTGCTTAAAAATTGGTATGT+GGG + tig0010575:8218-8237 Msa1348910:CDS 30.0%
CTTATCGCTTAGATAATTGT+TGG + tig0010575:8346-8365 Msa1348910:intron 30.0%
ATTCTCCTTGTAGAAATGAA+TGG + tig0010575:8546-8565 Msa1348910:intron 30.0%
!! TTTATTTTCTTTTCAGGCTC+TGG - tig0010575:8645-8664 Msa1348910:intergenic 30.0%
GAGCCTGAAAAGAAAATAAA+TGG + tig0010575:8645-8664 Msa1348910:CDS 30.0%
! CTTCCATTTACTTTCTTTTC+AGG - tig0010575:8744-8763 Msa1348910:intergenic 30.0%
CTGGAAGATAACAACTTAAA+AGG + tig0010575:8876-8895 Msa1348910:CDS 30.0%
! TATGTTGATGAATCATTGTG+GGG + tig0010575:9056-9075 Msa1348910:CDS 30.0%
! GACTTGTTTATACTTTCTCT+CGG - tig0010575:9232-9251 Msa1348910:intergenic 30.0%
ATTGCAGATATTGACAATGA+TGG + tig0010575:9274-9293 Msa1348910:CDS 30.0%
TATCATAACAACGTTGTGAT+TGG + tig0010575:9397-9416 Msa1348910:intron 30.0%
TCATAGTTATGTGAATAGGA+TGG + tig0010575:9429-9448 Msa1348910:intron 30.0%
TTTGTTGGGTTCATTATGAT+AGG - tig0010575:9503-9522 Msa1348910:intergenic 30.0%
ACCCAACAAAAATAGGATAT+AGG + tig0010575:9513-9532 Msa1348910:intron 30.0%
TCTATCAGAGTGAAATTGTA+GGG - tig0010575:9754-9773 Msa1348910:intergenic 30.0%
CTCTGATAGAGAAAGAAATT+TGG + tig0010575:9764-9783 Msa1348910:intron 30.0%
! GGACTGAGTTTTTCTTTTTT+TGG + tig0010575:9822-9841 Msa1348910:intron 30.0%
AATATGTATACAGCTGCAAA+GGG - tig0010575:9887-9906 Msa1348910:intergenic 30.0%
TCATCTTGCAGATAAGTATT+TGG - tig0010575:10008-10027 Msa1348910:intergenic 30.0%
ATAGAAGGAATGGTAATTAC+TGG - tig0010575:10162-10181 Msa1348910:intergenic 30.0%
CAATCCTTTGTGTAAAAGAT+TGG - tig0010575:10205-10224 Msa1348910:intergenic 30.0%
! CAATCTTTTACACAAAGGAT+TGG + tig0010575:10203-10222 Msa1348910:intron 30.0%
AAGATTGAATGCTCTATTCT+TGG + tig0010575:10386-10405 Msa1348910:intron 30.0%
AGATTGAATGCTCTATTCTT+GGG + tig0010575:10387-10406 Msa1348910:intron 30.0%
TCCATAAATGACTAGAACAT+TGG + tig0010575:10415-10434 Msa1348910:intron 30.0%
ACCAATGTTCTAGTCATTTA+TGG - tig0010575:10419-10438 Msa1348910:intergenic 30.0%
GAGATTTCAAAATTGTTGAG+AGG + tig0010575:10439-10458 Msa1348910:intron 30.0%
TATTTGTCAATTTAGTGGTC+TGG + tig0010575:10649-10668 Msa1348910:intron 30.0%
ATTCTTGTTGGAACTTCTTA+TGG + tig0010575:10908-10927 Msa1348910:CDS 30.0%
GATGATCTAACACATAGAAT+AGG - tig0010575:10934-10953 Msa1348910:intergenic 30.0%
TTCTATGTGTTAGATCATCA+TGG + tig0010575:10935-10954 Msa1348910:CDS 30.0%
! CAATAAAGTTTTGCATTGCA+AGG + tig0010575:11291-11310 Msa1348910:intron 30.0%
!! GGCTCTGAAATCTTAAAATT+CGG + tig0010575:11327-11346 Msa1348910:intron 30.0%
!! GCTCTGAAATCTTAAAATTC+GGG + tig0010575:11328-11347 Msa1348910:intron 30.0%
!!! CATAATTAGGGGTTTTAAGT+AGG + tig0010575:11396-11415 Msa1348910:intron 30.0%
TTCTGTTCGACTAATAAACA+AGG - tig0010575:11437-11456 Msa1348910:intergenic 30.0%
TCTCTAACTTTACCTATTTG+AGG - tig0010575:11520-11539 Msa1348910:intergenic 30.0%
TTGAGATAGTACATTACATG+TGG - tig0010575:11706-11725 Msa1348910:intergenic 30.0%
TGCTATTAAACATACACTGT+CGG - tig0010575:11804-11823 Msa1348910:intergenic 30.0%
!! TTTAAATTGGTTTGGGTTGA+TGG + tig0010575:11826-11845 Msa1348910:intron 30.0%
!! TTAAATTGGTTTGGGTTGAT+GGG + tig0010575:11827-11846 Msa1348910:intron 30.0%
TGATGGGATTTCTTAGAATT+TGG + tig0010575:11843-11862 Msa1348910:intron 30.0%
GATGGGATTTCTTAGAATTT+GGG + tig0010575:11844-11863 Msa1348910:intron 30.0%
ATGGGATTTCTTAGAATTTG+GGG + tig0010575:11845-11864 Msa1348910:intron 30.0%
TCGACAAGGTAATTATAAGA+TGG + tig0010575:11939-11958 Msa1348910:intron 30.0%
CAAGGTAATTATAAGATGGA+CGG + tig0010575:11943-11962 Msa1348910:intron 30.0%
TTCATTGACAAAGGCAAAAT+GGG - tig0010575:12123-12142 Msa1348910:intergenic 30.0%
TTTCATTGACAAAGGCAAAA+TGG - tig0010575:12124-12143 Msa1348910:intergenic 30.0%
!! TGAAAGTGTTTCATTGACAA+AGG - tig0010575:12132-12151 Msa1348910:intergenic 30.0%
CAATGAAACACTTTCAATCA+TGG + tig0010575:12136-12155 Msa1348910:intron 30.0%
TTCCCAAATTGTTAAGACAT+GGG + tig0010575:12207-12226 Msa1348910:intron 30.0%
CTAATATTCCTTTGTACCTT+TGG + tig0010575:12314-12333 Msa1348910:intron 30.0%
! AGTTGTACAAGCTATGTTTT+TGG - tig0010575:12341-12360 Msa1348910:intergenic 30.0%
TAAACAGAAGGAAAAGAAGA+AGG + tig0010575:12612-12631 Msa1348910:CDS 30.0%
AAACAGAAGGAAAAGAAGAA+GGG + tig0010575:12613-12632 Msa1348910:CDS 30.0%
! TCATTTAGCTTCTGGAAAAT+AGG - tig0010575:12790-12809 Msa1348910:intergenic 30.0%
TTGAAAATATCCTACCTTGA+GGG - tig0010575:12944-12963 Msa1348910:intergenic 30.0%
TTTGAAAATATCCTACCTTG+AGG - tig0010575:12945-12964 Msa1348910:intergenic 30.0%
ATTGCTTTATACCATGTTTC+AGG + tig0010575:12997-13016 Msa1348910:intron 30.0%
! ACATTATTTCTTCCTTGGTT+AGG - tig0010575:13034-13053 Msa1348910:intergenic 30.0%
! TTGCAACATTATTTCTTCCT+TGG - tig0010575:13039-13058 Msa1348910:intergenic 30.0%
AATAATGTTGCAAATCGGTA+CGG + tig0010575:13046-13065 Msa1348910:CDS 30.0%
GATAATTATAGATACCCATC+TGG + tig0010575:13154-13173 Msa1348910:CDS 30.0%
AGATCGAAAGTAATTTGGAT+GGG - tig0010575:13212-13231 Msa1348910:intergenic 30.0%
TTATAAACTGAGTGCTTCAT+AGG - tig0010575:13243-13262 Msa1348910:intergenic 30.0%
!! ATTATTTTGTTTCATGCTCC+AGG + tig0010575:13621-13640 Msa1348910:three_prime_UTR 30.0%
AGAATCATTTGTTCAAGCTT+TGG + tig0010575:13749-13768 Msa1348910:three_prime_UTR 30.0%
CTGATTACACTACACATAAA+GGG - tig0010575:13832-13851 Msa1348910:intergenic 30.0%
TCTGATTACACTACACATAA+AGG - tig0010575:13833-13852 Msa1348910:intergenic 30.0%
GTTTGGATAAACGGCTTATT+TGG - tig0010575:5526-5545 Msa0693590:intergenic 35.0%
!! GACAATTTTGAGAGTCCAAT+TGG + tig0010575:5606-5625 Msa1348910:five_prime_UTR 35.0%
! ATGAAAAAGTGCAGAGTAGA+AGG - tig0010575:5855-5874 Msa1348910:intergenic 35.0%
CCGAAACGTATTATTCTTCT+TGG - tig0010575:5902-5921 Msa1348910:intergenic 35.0%
GTTTAGAGATGAAGATGCTT+TGG + tig0010575:6050-6069 Msa1348910:intron 35.0%
!! CATCTTAGCTCTAAATTCAC+AGG - tig0010575:6090-6109 Msa1348910:intergenic 35.0%
! CTGTGAATTTAGAGCTAAGA+TGG + tig0010575:6088-6107 Msa1348910:CDS 35.0%
! TTTAGAGCTAAGATGGCAAA+CGG + tig0010575:6095-6114 Msa1348910:CDS 35.0%
CCTGTTAATATCAGCAATCA+AGG - tig0010575:6148-6167 Msa1348910:intergenic 35.0%
CCTTGATTGCTGATATTAAC+AGG + tig0010575:6145-6164 Msa1348910:CDS 35.0%
TTTGTTTGTCTAATGGAGCA+CGG + tig0010575:6191-6210 Msa1348910:intron 35.0%
!!! TTTTTGAAGGGTTTTGAAGG+GGG - tig0010575:6392-6411 Msa1348910:intergenic 35.0%
! CTCCCTACATTTCTTTTCTT+TGG - tig0010575:6505-6524 Msa1348910:intergenic 35.0%
GAGTAGCTTAATCTTGAGTA+CGG + tig0010575:6522-6541 Msa1348910:intron 35.0%
!!! CAATTTTGTTTTGGCAGTGA+TGG + tig0010575:6578-6597 Msa1348910:intron 35.0%
TCAAGGTAGTGAACAAAAGA+GGG - tig0010575:6623-6642 Msa1348910:intergenic 35.0%
TTCAAGGTAGTGAACAAAAG+AGG - tig0010575:6624-6643 Msa1348910:intergenic 35.0%
! ACATTGACGATCTTTTTACC+TGG - tig0010575:6677-6696 Msa1348910:intergenic 35.0%
! TAGCCTTGAGATTAGTTGAA+GGG + tig0010575:6810-6829 Msa1348910:intron 35.0%
AATCCCTTCAACTAATCTCA+AGG - tig0010575:6816-6835 Msa1348910:intergenic 35.0%
TCGTCTAATTCCTTCTCTTA+TGG - tig0010575:6863-6882 Msa1348910:intergenic 35.0%
TGAAAATTCAAGCCACACAT+GGG - tig0010575:6968-6987 Msa1348910:intergenic 35.0%
ATGAAAATTCAAGCCACACA+TGG - tig0010575:6969-6988 Msa1348910:intergenic 35.0%
TACAAAAGTAGTGCAAACAC+AGG - tig0010575:7024-7043 Msa1348910:intergenic 35.0%
!! TTTGCACTACTTTTGTAAGC+TGG + tig0010575:7027-7046 Msa1348910:intron 35.0%
! ACTTTTGTAAGCTGGTGTAA+TGG + tig0010575:7035-7054 Msa1348910:intron 35.0%
!! GTCATATTATCGATTCGTGT+TGG + tig0010575:7181-7200 Msa1348910:intron 35.0%
! ATACAACTCTCCTCTTTTAC+TGG + tig0010575:7217-7236 Msa1348910:intron 35.0%
AGTATCTAAGCCAGTAAAAG+AGG - tig0010575:7230-7249 Msa1348910:intergenic 35.0%
AAGGTATGACATAACACCAT+AGG + tig0010575:7271-7290 Msa1348910:intron 35.0%
TCATGTCAATTGAGAGAGTT+AGG + tig0010575:7394-7413 Msa1348910:intron 35.0%
TGCAAGCTGTACTGTTATAA+GGG + tig0010575:7454-7473 Msa1348910:intron 35.0%
CTTCTGAATTGTCAATATGC+AGG - tig0010575:7559-7578 Msa1348910:intergenic 35.0%
GATCCCATTCTTATCATTCT+TGG + tig0010575:7642-7661 Msa1348910:intron 35.0%
TATCATTCTTGGAGAATGGA+AGG + tig0010575:7653-7672 Msa1348910:intron 35.0%
TTTCTTCTCCGTCAAAGATT+GGG - tig0010575:7724-7743 Msa1348910:intergenic 35.0%
GTTATATTGTTACGAAAGGG+TGG + tig0010575:7786-7805 Msa1348910:intron 35.0%
TGATCTATCAGAATAAGGAC+AGG - tig0010575:7880-7899 Msa1348910:intergenic 35.0%
CCAGATGATCTATCAGAATA+AGG - tig0010575:7885-7904 Msa1348910:intergenic 35.0%
CCTTATTCTGATAGATCATC+TGG + tig0010575:7882-7901 Msa1348910:intron 35.0%
!!! TTCTTCTTGGTTTTTTAGGC+TGG + tig0010575:7934-7953 Msa1348910:intron 35.0%
AAATAGCACTTCACCATTGT+AGG - tig0010575:8045-8064 Msa1348910:intergenic 35.0%
!!! ATGGTGAAGTGCTATTTTTC+AGG + tig0010575:8048-8067 Msa1348910:CDS 35.0%
! TTTTAAGCACTTTCCTACGT+GGG - tig0010575:8208-8227 Msa1348910:intergenic 35.0%
!! TTTTTAAGCACTTTCCTACG+TGG - tig0010575:8209-8228 Msa1348910:intergenic 35.0%
TTGGTATGTGGGTTTGAATA+AGG + tig0010575:8229-8248 Msa1348910:CDS 35.0%
ATAAGCACAGCAGAAACTTA+CGG - tig0010575:8331-8350 Msa1348910:intergenic 35.0%
AATAAATGGAAGCCAATCAG+AGG + tig0010575:8659-8678 Msa1348910:CDS 35.0%
TGTTAATACTCTCCTCTGAT+TGG - tig0010575:8674-8693 Msa1348910:intergenic 35.0%
!! TTTACTTTCTTTTCAGGCTC+TGG - tig0010575:8738-8757 Msa1348910:intergenic 35.0%
GAGCCTGAAAAGAAAGTAAA+TGG + tig0010575:8738-8757 Msa1348910:CDS 35.0%
GATGAATTATCAGCAACTGT+TGG - tig0010575:8792-8811 Msa1348910:intergenic 35.0%
ATGAACTTCTTCCTTACCTT+TGG - tig0010575:8925-8944 Msa1348910:intergenic 35.0%
!! GTGATGAAGAATGGATTGAA+GGG + tig0010575:9078-9097 Msa1348910:CDS 35.0%
! TATTGACAATGATGGCGTAA+TGG + tig0010575:9282-9301 Msa1348910:CDS 35.0%
TATAAGCATAGACTCACTCT+TGG - tig0010575:9339-9358 Msa1348910:intergenic 35.0%
GAACCAAAATAGTCAGCTAA+AGG - tig0010575:9481-9500 Msa1348910:intergenic 35.0%
! CATGATCTCTTTTGCAGTAT+CGG + tig0010575:9651-9670 Msa1348910:intron 35.0%
CTCTATCAGAGTGAAATTGT+AGG - tig0010575:9755-9774 Msa1348910:intergenic 35.0%
! TGTTTTCAATCCAATCTGCA+TGG + tig0010575:9801-9820 Msa1348910:intron 35.0%
CAATATGTATACAGCTGCAA+AGG - tig0010575:9888-9907 Msa1348910:intergenic 35.0%
AAACGATAAAAGTCACATGC+TGG + tig0010575:10043-10062 Msa1348910:intron 35.0%
AACGATAAAAGTCACATGCT+GGG + tig0010575:10044-10063 Msa1348910:intron 35.0%
!! TGTGGCGTTTTAACAGATAA+TGG + tig0010575:10078-10097 Msa1348910:intron 35.0%
TTAGCAATGTTTAAGCTGAC+AGG + tig0010575:10678-10697 Msa1348910:intron 35.0%
! CAGGAGCATATGAAAGAATT+GGG + tig0010575:10713-10732 Msa1348910:CDS 35.0%
AATTGGGCGATATTGACATT+GGG + tig0010575:10729-10748 Msa1348910:CDS 35.0%
!!! AGGTCTTCATTGATTTTCTC+TGG + tig0010575:11026-11045 Msa1348910:intron 35.0%
!!! GGTCTTCATTGATTTTCTCT+GGG + tig0010575:11027-11046 Msa1348910:intron 35.0%
TCACAGAAAAGAAACACTTC+TGG - tig0010575:11216-11235 Msa1348910:intergenic 35.0%
! AAAGTTTTGCATTGCAAGGT+CGG + tig0010575:11295-11314 Msa1348910:intron 35.0%
TATTAGTCGAACAGAAGCTT+TGG + tig0010575:11441-11460 Msa1348910:intron 35.0%
GCAGCTGATATTAATGATGA+TGG + tig0010575:11583-11602 Msa1348910:CDS 35.0%
TCCCAAATCATATCTCCTTT+GGG - tig0010575:11661-11680 Msa1348910:intergenic 35.0%
TTCCCAAATCATATCTCCTT+TGG - tig0010575:11662-11681 Msa1348910:intergenic 35.0%
TGTACTATCTCAATCTTCCT+TGG + tig0010575:11713-11732 Msa1348910:intron 35.0%
! GTTTTGCTGAATATTGAACG+TGG + tig0010575:11776-11795 Msa1348910:intron 35.0%
CTAGTATCCATTATAGTCTC+CGG - tig0010575:11974-11993 Msa1348910:intergenic 35.0%
TAAGTTTCTCATTTGCCAAC+AGG + tig0010575:12076-12095 Msa1348910:intron 35.0%
CTTCCCAAATTGTTAAGACA+TGG + tig0010575:12206-12225 Msa1348910:intron 35.0%
AGCCCATGTCTTAACAATTT+GGG - tig0010575:12212-12231 Msa1348910:intergenic 35.0%
!! TTTTTGGACCAAAGGTACAA+AGG - tig0010575:12325-12344 Msa1348910:intergenic 35.0%
!!! AAGCTATGTTTTTGGACCAA+AGG - tig0010575:12333-12352 Msa1348910:intergenic 35.0%
TTAAGAGCAAAACTGCTCAA+TGG - tig0010575:12382-12401 Msa1348910:intergenic 35.0%
TTGTTGTACCAACACTATCT+GGG + tig0010575:12488-12507 Msa1348910:CDS 35.0%
AGATTCATGTTCTTGATGGA+AGG + tig0010575:12512-12531 Msa1348910:CDS 35.0%
GATTCATGTTCTTGATGGAA+GGG + tig0010575:12513-12532 Msa1348910:CDS 35.0%
ATCAAACGAAGAGGTAACAA+GGG - tig0010575:12644-12663 Msa1348910:intergenic 35.0%
CAAATAACCATCAAACGAAG+AGG - tig0010575:12653-12672 Msa1348910:intergenic 35.0%
GGTTATTTGTACCTCATTGA+TGG + tig0010575:12664-12683 Msa1348910:CDS 35.0%
! TAGCTTCTGGAAAATAGGAT+GGG - tig0010575:12785-12804 Msa1348910:intergenic 35.0%
! TTAGCTTCTGGAAAATAGGA+TGG - tig0010575:12786-12805 Msa1348910:intergenic 35.0%
! TTACTCGTTCATTTAGCTTC+TGG - tig0010575:12798-12817 Msa1348910:intergenic 35.0%
TGAAAATATCCTACCTTGAG+GGG - tig0010575:12943-12962 Msa1348910:intergenic 35.0%
TTTATACCATGTTTCAGGCA+TGG + tig0010575:13002-13021 Msa1348910:intron 35.0%
TCTATGTAACTCATCCTTCA+AGG + tig0010575:13080-13099 Msa1348910:CDS 35.0%
CTATGTAACTCATCCTTCAA+GGG + tig0010575:13081-13100 Msa1348910:CDS 35.0%
!!! GGAAGGAAAGAGTTTTTTTG+TGG + tig0010575:13117-13136 Msa1348910:CDS 35.0%
GAGATCGAAAGTAATTTGGA+TGG - tig0010575:13213-13232 Msa1348910:intergenic 35.0%
GATGATTTCACAGCATGAAA+AGG - tig0010575:13279-13298 Msa1348910:intergenic 35.0%
ATGTTTACCAGGCTGATAAT+AGG - tig0010575:13362-13381 Msa1348910:intergenic 35.0%
AGCTTAATTCGATGTTTACC+AGG - tig0010575:13373-13392 Msa1348910:intergenic 35.0%
TTCTTGTTCTTCCAATGCTT+GGG + tig0010575:13518-13537 Msa1348910:CDS 35.0%
TTCCTTGAAAATGATGGCAA+TGG - tig0010575:13586-13605 Msa1348910:intergenic 35.0%
TCGTTGTTCCTTGAAAATGA+TGG - tig0010575:13592-13611 Msa1348910:intergenic 35.0%
ACATCAAATTGAGTTATCCC+TGG + tig0010575:13680-13699 Msa1348910:three_prime_UTR 35.0%
CATCAAATTGAGTTATCCCT+GGG + tig0010575:13681-13700 Msa1348910:three_prime_UTR 35.0%
! ATTTGTTCAAGCTTTGGTTC+AGG + tig0010575:13755-13774 Msa1348910:three_prime_UTR 35.0%
! TTTGTTCAAGCTTTGGTTCA+GGG + tig0010575:13756-13775 Msa1348910:three_prime_UTR 35.0%
AGTGAATGAGATCCTGATAT+TGG + tig0010575:13799-13818 Msa1348910:three_prime_UTR 35.0%
AAGGGCAAAATTCCAATATC+AGG - tig0010575:13814-13833 Msa1348910:intergenic 35.0%
! TGTAGAACTGAACGTGTTTT+TGG + tig0010575:13861-13880 Msa1348910:three_prime_UTR 35.0%
TTGGTTTCAACTTTACGATG+TGG + tig0010575:13962-13981 Msa1348910:three_prime_UTR 35.0%
ATCTGAGTGTGTGAAGTGAT+GGG - tig0010575:5682-5701 Msa1348910:intergenic 40.0%
ATCACTTCACACACTCAGAT+CGG + tig0010575:5682-5701 Msa1348910:five_prime_UTR 40.0%
!!! TTTTGAAGGGTTTTGAAGGG+GGG - tig0010575:6391-6410 Msa1348910:intergenic 40.0%
TCACTACCTTGAAGTTCTTG+AGG + tig0010575:6631-6650 Msa1348910:CDS 40.0%
CACTACCTTGAAGTTCTTGA+GGG + tig0010575:6632-6651 Msa1348910:CDS 40.0%
! GTAGCCTTGAGATTAGTTGA+AGG + tig0010575:6809-6828 Msa1348910:intron 40.0%
ATTTAGAGGGCCATAAGAGA+AGG + tig0010575:6850-6869 Msa1348910:intron 40.0%
CTACATAGTGTGTCACACAA+GGG + tig0010575:7088-7107 Msa1348910:intron 40.0%
CATGGGTAATGACTTAGCAT+CGG + tig0010575:7154-7173 Msa1348910:intron 40.0%
GTATGACATAACACCATAGG+CGG + tig0010575:7274-7293 Msa1348910:intron 40.0%
AATGGCTCCTTGTACTGTTA+GGG + tig0010575:7297-7316 Msa1348910:intron 40.0%
AAGGGGAAGGAATTATAGAG+AGG + tig0010575:7368-7387 Msa1348910:intron 40.0%
AGGGGAAGGAATTATAGAGA+GGG + tig0010575:7369-7388 Msa1348910:intron 40.0%
ATTGAGAGAGTTAGGTCTTC+TGG + tig0010575:7402-7421 Msa1348910:intron 40.0%
AGTTAGGTCTTCTGGACATT+GGG + tig0010575:7410-7429 Msa1348910:intron 40.0%
TACAGCTTGCAGAACATCAT+GGG - tig0010575:7445-7464 Msa1348910:intergenic 40.0%
CTGCAAGCTGTACTGTTATA+AGG + tig0010575:7453-7472 Msa1348910:intron 40.0%
GCAAGCTGTACTGTTATAAG+GGG + tig0010575:7455-7474 Msa1348910:intron 40.0%
TGGTATCAGATCTCTGGTAT+TGG + tig0010575:7523-7542 Msa1348910:intron 40.0%
! GATCTCTGGTATTGGAGATT+CGG + tig0010575:7531-7550 Msa1348910:intron 40.0%
! ATCTCTGGTATTGGAGATTC+GGG + tig0010575:7532-7551 Msa1348910:intron 40.0%
GTTTCTTCTCCGTCAAAGAT+TGG - tig0010575:7725-7744 Msa1348910:intergenic 40.0%
!! TAGTTCTGAATGGAAGCCTA+AGG + tig0010575:7752-7771 Msa1348910:intron 40.0%
ATAACATCCTACCCTTCCTT+AGG - tig0010575:7771-7790 Msa1348910:intergenic 40.0%
TGCAGAGGACCAATGTAAAT+GGG + tig0010575:7811-7830 Msa1348910:intron 40.0%
!! ATAGCTTTGGCAACCTACAA+TGG + tig0010575:8029-8048 Msa1348910:CDS 40.0%
CTTGTCTGACATGATATAGC+CGG - tig0010575:8177-8196 Msa1348910:intergenic 40.0%
TATCATGTCAGACAAGCTTG+AGG + tig0010575:8181-8200 Msa1348910:CDS 40.0%
GTCATCATGAACATCAGGAT+GGG - tig0010575:8270-8289 Msa1348910:intergenic 40.0%
AGTTGGTCATCATGAACATC+AGG - tig0010575:8275-8294 Msa1348910:intergenic 40.0%
TAGTAGCTTCTTGGACAAGT+TGG - tig0010575:8292-8311 Msa1348910:intergenic 40.0%
AATTCGCGATAGTAGCTTCT+TGG - tig0010575:8301-8320 Msa1348910:intergenic 40.0%
TAAGCACAGCAGAAACTTAC+GGG - tig0010575:8330-8349 Msa1348910:intergenic 40.0%
GGCTTCCATTCATTTCTACA+AGG - tig0010575:8554-8573 Msa1348910:intergenic 40.0%
CTGAGGAATTAACTTCGTGT+CGG - tig0010575:8575-8594 Msa1348910:intergenic 40.0%
!! TAGACACGCTTTTTGTGTCA+GGG - tig0010575:8620-8639 Msa1348910:intergenic 40.0%
!! TTAGACACGCTTTTTGTGTC+AGG - tig0010575:8621-8640 Msa1348910:intergenic 40.0%
AGTAAATGGAAGCCAATCAG+AGG + tig0010575:8752-8771 Msa1348910:CDS 40.0%
TCTTAATACCCTCCTCTGAT+TGG - tig0010575:8767-8786 Msa1348910:intergenic 40.0%
GATAATTCATCTGTCAGTGC+TGG + tig0010575:8801-8820 Msa1348910:CDS 40.0%
CAGACAACAAGACTAGCATT+GGG + tig0010575:8844-8863 Msa1348910:CDS 40.0%
TTAAAAGGAGCTGAGCAAGT+TGG + tig0010575:8891-8910 Msa1348910:CDS 40.0%
!! CAAGTTGGTTCTGAATCCAA+AGG + tig0010575:8906-8925 Msa1348910:CDS 40.0%
!! TGGTTCTGAATCCAAAGGTA+AGG + tig0010575:8911-8930 Msa1348910:CDS 40.0%
!! GGTGATGAAGAATGGATTGA+AGG + tig0010575:9077-9096 Msa1348910:CDS 40.0%
! AGGGAAGCATGAGAAATTAG+AGG + tig0010575:9097-9116 Msa1348910:CDS 40.0%
!! GTCGTTTTCTTGTCTTTTCC+AGG + tig0010575:9249-9268 Msa1348910:intron 40.0%
TGTCAATATCTGCAATGACC+TGG - tig0010575:9270-9289 Msa1348910:intergenic 40.0%
! CAATGATGGCGTAATGGAAA+TGG + tig0010575:9288-9307 Msa1348910:CDS 40.0%
! GCACCTTTAGCTGACTATTT+TGG + tig0010575:9475-9494 Msa1348910:intron 40.0%
!! TCTTTTGCAGTATCGGAAAC+AGG + tig0010575:9658-9677 Msa1348910:intron 40.0%
!! CTTTTGCAGTATCGGAAACA+GGG + tig0010575:9659-9678 Msa1348910:intron 40.0%
TATCGGAAACAGGGTATGTT+GGG + tig0010575:9668-9687 Msa1348910:intron 40.0%
AAAACTCAGTCCATGCAGAT+TGG - tig0010575:9814-9833 Msa1348910:intergenic 40.0%
! CAGCCCAATCTTTTACACAA+AGG + tig0010575:10198-10217 Msa1348910:intron 40.0%
!! CTAAGCTCTAGATATACACC+TGG + tig0010575:10338-10357 Msa1348910:intron 40.0%
TTGTCAATTTAGTGGTCTGG+TGG + tig0010575:10652-10671 Msa1348910:intron 40.0%
TGACAGGTATTATGACAACC+AGG + tig0010575:10694-10713 Msa1348910:intron 40.0%
CCAATTCTTTCATATGCTCC+TGG - tig0010575:10715-10734 Msa1348910:intergenic 40.0%
! CCAGGAGCATATGAAAGAAT+TGG + tig0010575:10712-10731 Msa1348910:CDS 40.0%
GAATTGGGCGATATTGACAT+TGG + tig0010575:10728-10747 Msa1348910:CDS 40.0%
GACATTGGGAAATATGTTGC+TGG + tig0010575:10743-10762 Msa1348910:CDS 40.0%
ATTGGGAAATATGTTGCTGG+TGG + tig0010575:10746-10765 Msa1348910:CDS 40.0%
TGGACACAAAACAAGTCAAG+TGG + tig0010575:10786-10805 Msa1348910:CDS 40.0%
GAGAAGAATATACGTACGCT+CGG - tig0010575:10850-10869 Msa1348910:intergenic 40.0%
TTCTCCAACTGTTGTAGACT+TGG + tig0010575:10865-10884 Msa1348910:CDS 40.0%
TTGTAGACTTGGATGGTGAT+GGG + tig0010575:10876-10895 Msa1348910:CDS 40.0%
! TAGATCATCATGGTAATGCC+TGG + tig0010575:10945-10964 Msa1348910:intron 40.0%
! GTATGGTTGTGCTACTATCT+GGG - tig0010575:11087-11106 Msa1348910:intergenic 40.0%
GGAGATGAATCTCCTTGTAA+GGG - tig0010575:11112-11131 Msa1348910:intergenic 40.0%
TGGAGATGAATCTCCTTGTA+AGG - tig0010575:11113-11132 Msa1348910:intergenic 40.0%
!!! TTGCAAGGTCGGACATTTTT+TGG + tig0010575:11306-11325 Msa1348910:intron 40.0%
AGAGAAGTTCCCTCTTGAAA+TGG + tig0010575:11537-11556 Msa1348910:CDS 40.0%
AACAACACCTGCTTGAATCT+CGG - tig0010575:11563-11582 Msa1348910:intergenic 40.0%
CCATGCAACAACATTTCCAT+GGG - tig0010575:11635-11654 Msa1348910:intergenic 40.0%
TCCATGCAACAACATTTCCA+TGG - tig0010575:11636-11655 Msa1348910:intergenic 40.0%
CCAAATCATATCTCCTTTGG+GGG - tig0010575:11659-11678 Msa1348910:intergenic 40.0%
CCCAAATCATATCTCCTTTG+GGG - tig0010575:11660-11679 Msa1348910:intergenic 40.0%
CCCCAAAGGAGATATGATTT+GGG + tig0010575:11657-11676 Msa1348910:CDS 40.0%
GGATTTCTTAGAATTTGGGG+TGG + tig0010575:11848-11867 Msa1348910:intron 40.0%
! ATGCCATTTCACATCCAATG+TGG + tig0010575:11911-11930 Msa1348910:intron 40.0%
AAGAGTAATGAAAGCAAGCC+AGG + tig0010575:12031-12050 Msa1348910:intron 40.0%
AGAGTAATGAAAGCAAGCCA+GGG + tig0010575:12032-12051 Msa1348910:intron 40.0%
AATGAAAACTGGCAGCTCAA+AGG - tig0010575:12174-12193 Msa1348910:intergenic 40.0%
GAGCCCATGTCTTAACAATT+TGG - tig0010575:12213-12232 Msa1348910:intergenic 40.0%
! CCAACTATTGGTGATATCGA+CGG + tig0010575:12448-12467 Msa1348910:CDS 40.0%
! CAACTATTGGTGATATCGAC+GGG + tig0010575:12449-12468 Msa1348910:CDS 40.0%
! AACTATTGGTGATATCGACG+GGG + tig0010575:12450-12469 Msa1348910:CDS 40.0%
TTGGTACAACAAGCTCAGTA+CGG - tig0010575:12480-12499 Msa1348910:intergenic 40.0%
! CTTGTTGTACCAACACTATC+TGG + tig0010575:12487-12506 Msa1348910:CDS 40.0%
TGAATCTTCCCAGATAGTGT+TGG - tig0010575:12499-12518 Msa1348910:intergenic 40.0%
GGGAAGATTCATGTTCTTGA+TGG + tig0010575:12508-12527 Msa1348910:CDS 40.0%
! ATAAATGGGTACCGTCCAAT+AGG - tig0010575:12547-12566 Msa1348910:intergenic 40.0%
CGGTACCCATTTATAACTCA+TGG + tig0010575:12553-12572 Msa1348910:CDS 40.0%
CATCAAACGAAGAGGTAACA+AGG - tig0010575:12645-12664 Msa1348910:intergenic 40.0%
CTTGTTACCTCTTCGTTTGA+TGG + tig0010575:12643-12662 Msa1348910:CDS 40.0%
! TGTGCTGATGTTGTTGACAT+TGG + tig0010575:12697-12716 Msa1348910:CDS 40.0%
ATGCAGATATAGCATGGTCT+TGG + tig0010575:12825-12844 Msa1348910:intron 40.0%
CTGATTGTCTCGACAATGAA+TGG + tig0010575:12880-12899 Msa1348910:CDS 40.0%
AACTCTTTCCTTCCTCATCA+CGG - tig0010575:13111-13130 Msa1348910:intergenic 40.0%
GAACTTACAGTGACATGGTA+TGG - tig0010575:13190-13209 Msa1348910:intergenic 40.0%
! GCTTTATTGTTCTCTCTCCT+TGG - tig0010575:13330-13349 Msa1348910:intergenic 40.0%
GTCGAGATGGTTGACAAAAA+TGG + tig0010575:13430-13449 Msa1348910:CDS 40.0%
CTTCTTGTTCTTCCAATGCT+TGG + tig0010575:13517-13536 Msa1348910:CDS 40.0%
AAAATGATGGCAATGGCACT+GGG - tig0010575:13579-13598 Msa1348910:intergenic 40.0%
! TGCCATTGCCATCATTTTCA+AGG + tig0010575:13581-13600 Msa1348910:CDS 40.0%
TTCACATTTCCTGAGCTCAA+TGG - tig0010575:13651-13670 Msa1348910:intergenic 40.0%
CTTTGATCACGTAGTCAAAG+TGG + tig0010575:13716-13735 Msa1348910:three_prime_UTR 40.0%
! TTTGGTTCAGGGATAGTTGA+GGG + tig0010575:13767-13786 Msa1348910:three_prime_UTR 40.0%
AGAAAGAGGACGACACCAAT+TGG - tig0010575:5624-5643 Msa1348910:intergenic 45.0%
GATCTGAGTGTGTGAAGTGA+TGG - tig0010575:5683-5702 Msa1348910:intergenic 45.0%
TGATGGGAAGCTTGACATAG+TGG + tig0010575:6595-6614 Msa1348910:CDS 45.0%
! ACCTGGCATTTTGTCTCCAT+CGG - tig0010575:6660-6679 Msa1348910:intergenic 45.0%
TTGATTCTCTGTCCCATGTG+TGG + tig0010575:6953-6972 Msa1348910:intron 45.0%
GCTACATAGTGTGTCACACA+AGG + tig0010575:7087-7106 Msa1348910:intron 45.0%
ACATAACACCATAGGCGGAA+TGG + tig0010575:7279-7298 Msa1348910:intron 45.0%
GAATGGCTCCTTGTACTGTT+AGG + tig0010575:7296-7315 Msa1348910:intron 45.0%
CATCACACCCTAACAGTACA+AGG - tig0010575:7307-7326 Msa1348910:intergenic 45.0%
GAGTTAGGTCTTCTGGACAT+TGG + tig0010575:7409-7428 Msa1348910:intron 45.0%
GTACAGCTTGCAGAACATCA+TGG - tig0010575:7446-7465 Msa1348910:intergenic 45.0%
CTTGGAGAATGGAAGGAACT+TGG + tig0010575:7660-7679 Msa1348910:intron 45.0%
TCTGAATGGAAGCCTAAGGA+AGG + tig0010575:7756-7775 Msa1348910:intron 45.0%
CTGAATGGAAGCCTAAGGAA+GGG + tig0010575:7757-7776 Msa1348910:intron 45.0%
CTGCAGAGGACCAATGTAAA+TGG + tig0010575:7810-7829 Msa1348910:intron 45.0%
TAGAATGCACAGTCGATTGG+TGG - tig0010575:7968-7987 Msa1348910:intergenic 45.0%
GACTAGAATGCACAGTCGAT+TGG - tig0010575:7971-7990 Msa1348910:intergenic 45.0%
TGGCGTGAGAGAAATAGCTT+TGG + tig0010575:8016-8035 Msa1348910:CDS 45.0%
GGGTTTGAATAAGGATCCAG+TGG + tig0010575:8238-8257 Msa1348910:CDS 45.0%
CATGAACATCAGGATGGGTA+CGG - tig0010575:8265-8284 Msa1348910:intergenic 45.0%
GGTCATCATGAACATCAGGA+TGG - tig0010575:8271-8290 Msa1348910:intergenic 45.0%
TTCTGTTGATGTGGAAGCTG+AGG - tig0010575:8592-8611 Msa1348910:intergenic 45.0%
AGGGTGACTTTCTGTTGATG+TGG - tig0010575:8601-8620 Msa1348910:intergenic 45.0%
AAATGGAAGCCAATCAGAGG+AGG + tig0010575:8662-8681 Msa1348910:CDS 45.0%
AATGGAAGCCAATCAGAGGA+GGG + tig0010575:8663-8682 Msa1348910:CDS 45.0%
GCAGACAACAAGACTAGCAT+TGG + tig0010575:8843-8862 Msa1348910:CDS 45.0%
! ACAACAAGACTAGCATTGGG+AGG + tig0010575:8847-8866 Msa1348910:CDS 45.0%
AGAAGTTCATGCTGCAACTG+TGG + tig0010575:8935-8954 Msa1348910:CDS 45.0%
TGCTGCAACTGTGGAAAATG+AGG + tig0010575:8944-8963 Msa1348910:CDS 45.0%
GCAACTGTGGAAAATGAGGA+AGG + tig0010575:8948-8967 Msa1348910:CDS 45.0%
TGTGGAAAATGAGGAAGGAC+TGG + tig0010575:8953-8972 Msa1348910:CDS 45.0%
ATTCCGCAATAGTGATGACC+TGG + tig0010575:9004-9023 Msa1348910:CDS 45.0%
CATAGTTGTACTCATCAGCC+AGG - tig0010575:9025-9044 Msa1348910:intergenic 45.0%
CATTGTGGGGTGATGAAGAA+TGG + tig0010575:9069-9088 Msa1348910:CDS 45.0%
AAGGTGTAGGAGGAACTAAC+AGG - tig0010575:9158-9177 Msa1348910:intergenic 45.0%
GTATCGGAAACAGGGTATGT+TGG + tig0010575:9667-9686 Msa1348910:intron 45.0%
CCATCCAAGTCTACAACAGT+TGG - tig0010575:10872-10891 Msa1348910:intergenic 45.0%
CCAACTGTTGTAGACTTGGA+TGG + tig0010575:10869-10888 Msa1348910:CDS 45.0%
GTTGTAGACTTGGATGGTGA+TGG + tig0010575:10875-10894 Msa1348910:CDS 45.0%
GGGTATCTGGACATTCTTGT+TGG + tig0010575:10896-10915 Msa1348910:CDS 45.0%
! GGTATGGTTGTGCTACTATC+TGG - tig0010575:11088-11107 Msa1348910:intergenic 45.0%
ACAACCATACCACCCTTACA+AGG + tig0010575:11097-11116 Msa1348910:intron 45.0%
ATCTCCTTGTAAGGGTGGTA+TGG - tig0010575:11104-11123 Msa1348910:intergenic 45.0%
GATGAATCTCCTTGTAAGGG+TGG - tig0010575:11109-11128 Msa1348910:intergenic 45.0%
GAATCTCGGCCATTTCAAGA+GGG - tig0010575:11549-11568 Msa1348910:intergenic 45.0%
TGAATCTCGGCCATTTCAAG+AGG - tig0010575:11550-11569 Msa1348910:intergenic 45.0%
CTAGTTACTGCTGATACCCA+TGG + tig0010575:11616-11635 Msa1348910:CDS 45.0%
CCCATGGAAATGTTGTTGCA+TGG + tig0010575:11632-11651 Msa1348910:CDS 45.0%
CCCCCAAAGGAGATATGATT+TGG + tig0010575:11656-11675 Msa1348910:CDS 45.0%
CTACACTCATTGACATGCCA+AGG - tig0010575:11733-11752 Msa1348910:intergenic 45.0%
GCACCACATTGGATGTGAAA+TGG - tig0010575:11917-11936 Msa1348910:intergenic 45.0%
TATAAGATGGACGGAGAAGC+CGG + tig0010575:11952-11971 Msa1348910:intron 45.0%
!! ATGGGCTCTTCTGTTTCTGA+TGG + tig0010575:12225-12244 Msa1348910:intron 45.0%
TTTCCACAGGCTCCAACTAT+TGG + tig0010575:12436-12455 Msa1348910:intron 45.0%
CCGTCGATATCACCAATAGT+TGG - tig0010575:12451-12470 Msa1348910:intergenic 45.0%
CATGTTCTTGATGGAAGGGA+TGG + tig0010575:12517-12536 Msa1348910:CDS 45.0%
! TACCTCATTGATGGACCTAC+AGG + tig0010575:12673-12692 Msa1348910:CDS 45.0%
GTCTTGGCAGACAATGTAGA+TGG + tig0010575:12841-12860 Msa1348910:CDS 45.0%
TTGGCAGACAATGTAGATGG+TGG + tig0010575:12844-12863 Msa1348910:CDS 45.0%
TGGCAGACAATGTAGATGGT+GGG + tig0010575:12845-12864 Msa1348910:CDS 45.0%
AATATCCTACCTTGAGGGGA+TGG - tig0010575:12939-12958 Msa1348910:intergenic 45.0%
CAATCTCCATGCCTGAAACA+TGG - tig0010575:13011-13030 Msa1348910:intergenic 45.0%
AGATACCCATCTGGTCATCA+AGG + tig0010575:13163-13182 Msa1348910:CDS 45.0%
! ATGGTCCTTGATGACCAGAT+GGG - tig0010575:13171-13190 Msa1348910:intergenic 45.0%
! TATGGTCCTTGATGACCAGA+TGG - tig0010575:13172-13191 Msa1348910:intergenic 45.0%
GATGGGAACTTACAGTGACA+TGG - tig0010575:13195-13214 Msa1348910:intergenic 45.0%
! TCTCTCCTTGGTAATTGCCA+GGG - tig0010575:13318-13337 Msa1348910:intergenic 45.0%
AACCAGACCTATTATCAGCC+TGG + tig0010575:13352-13371 Msa1348910:CDS 45.0%
TACCAGGCTGATAATAGGTC+TGG - tig0010575:13357-13376 Msa1348910:intergenic 45.0%
TCGAATTAAGCTGCCAACTG+TGG + tig0010575:13381-13400 Msa1348910:CDS 45.0%
CGAATTAAGCTGCCAACTGT+GGG + tig0010575:13382-13401 Msa1348910:CDS 45.0%
! AAGGACCACAGGAACAGTTT+TGG + tig0010575:13408-13427 Msa1348910:CDS 45.0%
!! AGGAACAGTTTTGGTCGAGA+TGG + tig0010575:13417-13436 Msa1348910:CDS 45.0%
CTTCCAATGCTTGGGATGTT+TGG + tig0010575:13526-13545 Msa1348910:CDS 45.0%
ACACCAAACATCCCAAGCAT+TGG - tig0010575:13532-13551 Msa1348910:intergenic 45.0%
GAAAATGATGGCAATGGCAC+TGG - tig0010575:13580-13599 Msa1348910:intergenic 45.0%
TACGTGATCAAAGCTCACTG+CGG - tig0010575:13709-13728 Msa1348910:intergenic 45.0%
! CTTTGGTTCAGGGATAGTTG+AGG + tig0010575:13766-13785 Msa1348910:three_prime_UTR 45.0%
!! GTGAAGTGATGGGTGCTCTT+TGG - tig0010575:5672-5691 Msa1348910:intergenic 50.0%
! TTCATCCTCCGTTTTCGCAG+AGG + tig0010575:5870-5889 Msa1348910:CDS 50.0%
GGAATCCTCCTCTGCGAAAA+CGG - tig0010575:5881-5900 Msa1348910:intergenic 50.0%
ACCGATGGAGACAAAATGCC+AGG + tig0010575:6656-6675 Msa1348910:CDS 50.0%
CTGCGTCATTTGCTTCTCTC+TGG - tig0010575:6927-6946 Msa1348910:intergenic 50.0%
TAGGTCTTCTGGACATTGGG+TGG + tig0010575:7413-7432 Msa1348910:intron 50.0%
GGAGAATGGAAGGAACTTGG+AGG + tig0010575:7663-7682 Msa1348910:intron 50.0%
ATGGAAGCCTAAGGAAGGGT+AGG + tig0010575:7761-7780 Msa1348910:intron 50.0%
ACAGTCGATTGGTGGAAAGC+AGG - tig0010575:7960-7979 Msa1348910:intergenic 50.0%
TAGCAGCCACGAAGTTTCTG+CGG + tig0010575:8450-8469 Msa1348910:intron 50.0%
TGTAGACCGCAGAAACTTCG+TGG - tig0010575:8459-8478 Msa1348910:intergenic 50.0%
!! ATCTGTCAGTGCTGGTTCTG+TGG + tig0010575:8809-8828 Msa1348910:CDS 50.0%
! ACAAGACTAGCATTGGGAGG+CGG + tig0010575:8850-8869 Msa1348910:CDS 50.0%
CAGCCAGGTCATCACTATTG+CGG - tig0010575:9010-9029 Msa1348910:intergenic 50.0%
GTAGGAGGAACTAACAGGAG+TGG - tig0010575:9153-9172 Msa1348910:intergenic 50.0%
AAGTCACATGCTGGGAGCTT+TGG + tig0010575:10052-10071 Msa1348910:intron 50.0%
!! CTTGGATGGTGATGGGTATC+TGG + tig0010575:10883-10902 Msa1348910:CDS 50.0%
TAAGCGAGTAGCAGAGAAGC+AGG - tig0010575:10973-10992 Msa1348910:intergenic 50.0%
GAAATGGCCGAGATTCAAGC+AGG + tig0010575:11553-11572 Msa1348910:CDS 50.0%
GGAGAAGCCGGAGACTATAA+TGG + tig0010575:11964-11983 Msa1348910:intron 50.0%
TCACCAATAGTTGGAGCCTG+TGG - tig0010575:12442-12461 Msa1348910:intergenic 50.0%
! ATTGGTGATATCGACGGGGA+TGG + tig0010575:12454-12473 Msa1348910:CDS 50.0%
GGAAGGGATGGATCACCTAT+TGG + tig0010575:12529-12548 Msa1348910:CDS 50.0%
GGGATGGATCACCTATTGGA+CGG + tig0010575:12533-12552 Msa1348910:CDS 50.0%
AGCCTGTAGGTCCATCAATG+AGG - tig0010575:12678-12697 Msa1348910:intergenic 50.0%
ACAACATCAGCACAGCCTGT+AGG - tig0010575:12691-12710 Msa1348910:intergenic 50.0%
GGCAGACAATGTAGATGGTG+GGG + tig0010575:12846-12865 Msa1348910:CDS 50.0%
GCATGGAGATTGCCTAACCA+AGG + tig0010575:13019-13038 Msa1348910:CDS 50.0%
TCATCACGGAAAGCCCTTGA+AGG - tig0010575:13097-13116 Msa1348910:intergenic 50.0%
TTCAAGGGCTTTCCGTGATG+AGG + tig0010575:13096-13115 Msa1348910:CDS 50.0%
GTAATTGCCAGGGACAAGCA+AGG - tig0010575:13308-13327 Msa1348910:intergenic 50.0%
CTTGTCCCTGGCAATTACCA+AGG + tig0010575:13310-13329 Msa1348910:CDS 50.0%
! CTCTCTCCTTGGTAATTGCC+AGG - tig0010575:13319-13338 Msa1348910:intergenic 50.0%
CTCGACCAAAACTGTTCCTG+TGG - tig0010575:13416-13435 Msa1348910:intergenic 50.0%
! ATCCTCCGTTTTCGCAGAGG+AGG + tig0010575:5873-5892 Msa1348910:CDS 55.0%
ATCCTCCTCTGCGAAAACGG+AGG - tig0010575:5878-5897 Msa1348910:intergenic 55.0%
TGGGTATCCGAGCGCATCAT+CGG - tig0010575:5938-5957 Msa1348910:intergenic 55.0%
CGGTGCCCTCAAGAACTTCA+AGG - tig0010575:6640-6659 Msa1348910:intergenic 55.0%
!! GAAGTTCTTGAGGGCACCGA+TGG + tig0010575:6641-6660 Msa1348910:CDS 55.0%
ACAAGGAGCCATTCCGCCTA+TGG - tig0010575:7290-7309 Msa1348910:intergenic 55.0%
TACGAAAGGGTGGTCTGCAG+AGG + tig0010575:7796-7815 Msa1348910:intron 55.0%
ACAAGCTTGAGGTCCCACGT+AGG + tig0010575:8192-8211 Msa1348910:CDS 55.0%
!! TGCTGGGAGCTTTGGAGATG+TGG + tig0010575:10060-10079 Msa1348910:intron 55.0%
GTTGTTGCATGGACCCCCAA+AGG + tig0010575:11643-11662 Msa1348910:CDS 55.0%
!! CCTTGTCGAGAGCACCACAT+TGG - tig0010575:11928-11947 Msa1348910:intergenic 55.0%
CCAATGTGGTGCTCTCGACA+AGG + tig0010575:11925-11944 Msa1348910:intron 55.0%
TTGAGGGGATGGTGAGGTGA+GGG - tig0010575:12928-12947 Msa1348910:intergenic 55.0%
GCAAATCGGTACGGTCGTGA+AGG + tig0010575:13055-13074 Msa1348910:CDS 55.0%
AGGGCTTTCCGTGATGAGGA+AGG + tig0010575:13100-13119 Msa1348910:CDS 55.0%
CAGACTTCCTTGCTTGTCCC+TGG + tig0010575:13298-13317 Msa1348910:intron 55.0%
AGCTGCCAACTGTGGGAGTA+AGG + tig0010575:13389-13408 Msa1348910:CDS 55.0%
GTGGTCCTTACTCCCACAGT+TGG - tig0010575:13397-13416 Msa1348910:intergenic 55.0%
ACTGTGGGAGTAAGGACCAC+AGG + tig0010575:13397-13416 Msa1348910:CDS 55.0%
CTTGTCATCCTTCGCCCACA+AGG + tig0010575:13553-13572 Msa1348910:CDS 55.0%
GAAGCCACCGATGATGCGCT+CGG + tig0010575:5928-5947 Msa1348910:CDS 60.0%
GTATCCGAGCGCATCATCGG+TGG - tig0010575:5935-5954 Msa1348910:intergenic 60.0%
TCAGGATGGGTACGGTCCAC+TGG - tig0010575:8257-8276 Msa1348910:intergenic 60.0%
GTAGCAGAGAAGCAGGCTCC+AGG - tig0010575:10966-10985 Msa1348910:intergenic 60.0%
CTTGAGGGGATGGTGAGGTG+AGG - tig0010575:12929-12948 Msa1348910:intergenic 60.0%
CTCACCTCACCATCCCCTCA+AGG + tig0010575:12927-12946 Msa1348910:CDS 60.0%
CCTACCTTGAGGGGATGGTG+AGG - tig0010575:12934-12953 Msa1348910:intergenic 60.0%
CCTCACCATCCCCTCAAGGT+AGG + tig0010575:12931-12950 Msa1348910:intron 60.0%
! GCAATGGCACTGGGCCTTGT+GGG - tig0010575:13570-13589 Msa1348910:intergenic 60.0%
CCTGAGCTCAATGGTGTGCC+TGG - tig0010575:13642-13661 Msa1348910:intergenic 60.0%
CCAGGCACACCATTGAGCTC+AGG + tig0010575:13639-13658 Msa1348910:three_prime_UTR 60.0%
AAAGCTCACTGCGGCACCCA+GGG - tig0010575:13700-13719 Msa1348910:intergenic 60.0%
! TAGCATTGGGAGGCGGCTGC+TGG + tig0010575:8857-8876 Msa1348910:CDS 65.0%
! GGCAATGGCACTGGGCCTTG+TGG - tig0010575:13571-13590 Msa1348910:intergenic 65.0%
CAAAGCTCACTGCGGCACCC+AGG - tig0010575:13701-13720 Msa1348910:intergenic 65.0%
! GCACTGGGCCTTGTGGGCGA+AGG - tig0010575:13564-13583 Msa1348910:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0010575 gene 5517 14109 5517 ID=Msa1348910;Name=Msa1348910
tig0010575 mRNA 5517 14109 5517 ID=Msa1348910-mRNA-1;Parent=Msa1348910;Name=Msa1348910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=297|1|1|1|1|1|13|494|876
tig0010575 exon 5517 5962 5517 ID=Msa1348910-mRNA-1:exon:6646;Parent=Msa1348910-mRNA-1
tig0010575 exon 6056 6166 6056 ID=Msa1348910-mRNA-1:exon:6647;Parent=Msa1348910-mRNA-1
tig0010575 exon 6595 6677 6595 ID=Msa1348910-mRNA-1:exon:6648;Parent=Msa1348910-mRNA-1
tig0010575 exon 7952 8069 7952 ID=Msa1348910-mRNA-1:exon:6649;Parent=Msa1348910-mRNA-1
tig0010575 exon 8169 8329 8169 ID=Msa1348910-mRNA-1:exon:6650;Parent=Msa1348910-mRNA-1
tig0010575 exon 8559 9157 8559 ID=Msa1348910-mRNA-1:exon:6651;Parent=Msa1348910-mRNA-1
tig0010575 exon 9271 9341 9271 ID=Msa1348910-mRNA-1:exon:6652;Parent=Msa1348910-mRNA-1
tig0010575 exon 10700 10956 10700 ID=Msa1348910-mRNA-1:exon:6653;Parent=Msa1348910-mRNA-1
tig0010575 exon 11527 11708 11527 ID=Msa1348910-mRNA-1:exon:6654;Parent=Msa1348910-mRNA-1
tig0010575 exon 12445 12728 12445 ID=Msa1348910-mRNA-1:exon:6655;Parent=Msa1348910-mRNA-1
tig0010575 exon 12831 12948 12831 ID=Msa1348910-mRNA-1:exon:6656;Parent=Msa1348910-mRNA-1
tig0010575 exon 13019 13201 13019 ID=Msa1348910-mRNA-1:exon:6657;Parent=Msa1348910-mRNA-1
tig0010575 exon 13301 14109 13301 ID=Msa1348910-mRNA-1:exon:6658;Parent=Msa1348910-mRNA-1
tig0010575 five_prime_UTR 5517 5813 5517 ID=Msa1348910-mRNA-1:five_prime_utr;Parent=Msa1348910-mRNA-1
tig0010575 CDS 5814 5962 5814 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 6056 6166 6056 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 6595 6677 6595 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 7952 8069 7952 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 8169 8329 8169 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 8559 9157 8559 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 9271 9341 9271 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 10700 10956 10700 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 11527 11708 11527 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 12445 12728 12445 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 12831 12948 12831 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 13019 13201 13019 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 CDS 13301 13615 13301 ID=Msa1348910-mRNA-1:cds;Parent=Msa1348910-mRNA-1
tig0010575 three_prime_UTR 13616 14109 13616 ID=Msa1348910-mRNA-1:three_prime_utr;Parent=Msa1348910-mRNA-1
Gene Sequence

>Msa1348910

ATGAAACCCTTTTCATCCAAAAAAGTTCTTCTTTTTCTCCTTCTACTCTGCACTTTTTCATCCTCCGTTTTCGCAGAGGAGGATTCCAAGAAGAATAATACGTTTCGGGAACGTGAAGCCACCGATGATGCGCTCGGATACCCAGAAATAGATGAAGATGCTTTGGTGAATTCGAAATGTCCTGTGAATTTAGAGCTAAGATGGCAAACGGAAGTTAGTTCTAGTGTTTATGCAAATCCCTTGATTGCTGATATTAACAGTGATGGGAAGCTTGACATAGTGGTTCCCTCTTTTGTTCACTACCTTGAAGTTCTTGAGGGCACCGATGGAGACAAAATGCCAGGCTGGCCTGCTTTCCACCAATCGACTGTGCATTCTAGTCCACTTCTATATGACATAGACAAAGATGGCGTGAGAGAAATAGCTTTGGCAACCTACAATGGTGAAGTGCTATTTTTCAGGGTTTCCGGCTATATCATGTCAGACAAGCTTGAGGTCCCACGTAGGAAAGTGCTTAAAAATTGGTATGTGGGTTTGAATAAGGATCCAGTGGACCGTACCCATCCTGATGTTCATGATGACCAACTTGTCCAAGAAGCTACTATCGCGAATTCTATGTCCCAAATGAATGGAAGCCGACACGAAGTTAATTCCTCAGCTTCCACATCAACAGAAAGTCACCCTGACACAAAAAGCGTGTCTAATCCAGAGCCTGAAAAGAAAATAAATGGAAGCCAATCAGAGGAGAGTATTAACACATCAACAGAAAGTCACCCTGATACAAAAAATGTGTCTAATCCAGAGCCTGAAAAGAAAGTAAATGGAAGCCAATCAGAGGAGGGTATTAAGATGCCAACAGTTGCTGATAATTCATCTGTCAGTGCTGGTTCTGTGGAGACTGTTAATGCAGACAACAAGACTAGCATTGGGAGGCGGCTGCTGGAAGATAACAACTTAAAAGGAGCTGAGCAAGTTGGTTCTGAATCCAAAGGTAAGGAAGAAGTTCATGCTGCAACTGTGGAAAATGAGGAAGGACTGGAAGCAGATGCTGATTCATCTTTTGAGTTATTCCGCAATAGTGATGACCTGGCTGATGAGTACAACTATGATTATGATGATTATGTTGATGAATCATTGTGGGGTGATGAAGAATGGATTGAAGGGAAGCATGAGAAATTAGAGGATTACGTGAATGTTGACTCACACATCTTGTCCACTCCTGTCATTGCAGATATTGACAATGATGGCGTAATGGAAATGGTTGTTGCTGTTTCTTATTTTTTTGACCAAGAGTATTATGACAACCAGGAGCATATGAAAGAATTGGGCGATATTGACATTGGGAAATATGTTGCTGGTGGTATTGTTGTTTTTAATCTGGACACAAAACAAGTCAAGTGGACTGCAGAACTTGATATGAGTACAGATACAGCAAACTTCCGAGCGTACGTATATTCTTCTCCAACTGTTGTAGACTTGGATGGTGATGGGTATCTGGACATTCTTGTTGGAACTTCTTATGGCCTATTCTATGTGTTAGATCATCATGGTAAAGTTAGAGAGAAGTTCCCTCTTGAAATGGCCGAGATTCAAGCAGGTGTTGTTGCAGCTGATATTAATGATGATGGAAAAATTGAGCTAGTTACTGCTGATACCCATGGAAATGTTGTTGCATGGACCCCCAAAGGAGATATGATTTGGGAAAAGCATCTGAAGAGTCTTATTCCACATGCTCCAACTATTGGTGATATCGACGGGGATGGCCGTACTGAGCTTGTTGTACCAACACTATCTGGGAAGATTCATGTTCTTGATGGAAGGGATGGATCACCTATTGGACGGTACCCATTTATAACTCATGGAAGAATAATGAATCAAATTCTTCTTGTTGATTTAAGTAAACAGAAGGAAAAGAAGAAGGGATTGACCCTTGTTACCTCTTCGTTTGATGGTTATTTGTACCTCATTGATGGACCTACAGGCTGTGCTGATGTTGTTGACATTGGTGAAACTTCATATAGCATGGTCTTGGCAGACAATGTAGATGGTGGGGATGATCTTGATCTGATTGTCTCGACAATGAATGGCAACGTCTTCTGCTTCTCGACTCCCTCACCTCACCATCCCCTCAAGGCATGGAGATTGCCTAACCAAGGAAGAAATAATGTTGCAAATCGGTACGGTCGTGAAGGCATCTATGTAACTCATCCTTCAAGGGCTTTCCGTGATGAGGAAGGAAAGAGTTTTTTTGTGGAAATTGAGATTGTAGATAATTATAGATACCCATCTGGTCATCAAGGACCATACCATGTCACTACTTCCTTGCTTGTCCCTGGCAATTACCAAGGAGAGAGAACAATAAAGCAGAACCAGACCTATTATCAGCCTGGTAAACATCGAATTAAGCTGCCAACTGTGGGAGTAAGGACCACAGGAACAGTTTTGGTCGAGATGGTTGACAAAAATGGACTCTATTTCTCTGATGAATTCTCTCTTACATTCCATATGCACTACTATAAATTGTTGAAGTGGCTTCTTGTTCTTCCAATGCTTGGGATGTTTGGTGTGCTTGTCATCCTTCGCCCACAAGGCCCAGTGCCATTGCCATCATTTTCAAGGAACAACGATTAG
Protein sequence

>Msa1348910

MKPFSSKKVLLFLLLLCTFSSSVFAEEDSKKNNTFREREATDDALGYPEIDEDALVNSKCPVNLELRWQTEVSSSVYANPLIADINSDGKLDIVVPSFVHYLEVLEGTDGDKMPGWPAFHQSTVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYIMSDKLEVPRRKVLKNWYVGLNKDPVDRTHPDVHDDQLVQEATIANSMSQMNGSRHEVNSSASTSTESHPDTKSVSNPEPEKKINGSQSEESINTSTESHPDTKNVSNPEPEKKVNGSQSEEGIKMPTVADNSSVSAGSVETVNADNKTSIGRRLLEDNNLKGAEQVGSESKGKEEVHAATVENEEGLEADADSSFELFRNSDDLADEYNYDYDDYVDESLWGDEEWIEGKHEKLEDYVNVDSHILSTPVIADIDNDGVMEMVVAVSYFFDQEYYDNQEHMKELGDIDIGKYVAGGIVVFNLDTKQVKWTAELDMSTDTANFRAYVYSSPTVVDLDGDGYLDILVGTSYGLFYVLDHHGKVREKFPLEMAEIQAGVVAADINDDGKIELVTADTHGNVVAWTPKGDMIWEKHLKSLIPHAPTIGDIDGDGRTELVVPTLSGKIHVLDGRDGSPIGRYPFITHGRIMNQILLVDLSKQKEKKKGLTLVTSSFDGYLYLIDGPTGCADVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKAWRLPNQGRNNVANRYGREGIYVTHPSRAFRDEEGKSFFVEIEIVDNYRYPSGHQGPYHVTTSLLVPGNYQGERTIKQNQTYYQPGKHRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMLGMFGVLVILRPQGPVPLPSFSRNND*