AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1170890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170890 MtrunA17_Chr5g0437681 98.765 567 7 0 1 567 1 567 0.0 1167
Msa1170890 MtrunA17_Chr3g0114211 81.162 568 96 3 4 567 10 570 0.0 969
Msa1170890 MtrunA17_Chr5g0431581 59.507 568 221 4 1 567 1 560 0.0 728
Msa1170890 MtrunA17_Chr5g0404361 50.265 565 261 5 7 567 63 611 0.0 604
Msa1170890 MtrunA17_Chr5g0404341 50.970 567 256 7 7 567 16 566 0.0 595
Msa1170890 MtrunA17_Chr7g0238941 52.021 569 254 9 9 567 19 578 0.0 590
Msa1170890 MtrunA17_Chr7g0237491 51.215 576 263 11 4 567 11 580 0.0 585
Msa1170890 MtrunA17_Chr7g0238981 49.914 583 264 9 7 567 17 593 0.0 583
Msa1170890 MtrunA17_Chr4g0031901 52.057 559 245 11 7 551 20 569 0.0 580
Msa1170890 MtrunA17_Chr5g0429511 49.291 564 266 7 8 567 11 558 0.0 579
Msa1170890 MtrunA17_Chr4g0005921 49.562 571 270 6 1 567 1 557 0.0 578
Msa1170890 MtrunA17_Chr7g0237441 49.913 575 268 10 6 567 13 580 0.0 576
Msa1170890 MtrunA17_Chr2g0278811 47.119 590 272 6 11 567 25 607 0.0 574
Msa1170890 MtrunA17_Chr7g0238351 50.089 563 263 11 16 567 26 581 0.0 569
Msa1170890 MtrunA17_Chr5g0436461 49.735 567 261 7 8 567 5 554 0.0 564
Msa1170890 MtrunA17_Chr3g0104061 48.596 570 272 8 2 567 4 556 0.0 559
Msa1170890 MtrunA17_Chr7g0240971 49.223 579 273 9 1 567 1 570 0.0 546
Msa1170890 MtrunA17_Chr4g0008521 49.101 556 260 8 25 567 27 572 0.0 535
Msa1170890 MtrunA17_Chr7g0240991 45.899 573 284 10 10 567 10 571 0.0 534
Msa1170890 MtrunA17_Chr8g0346581 44.786 585 291 6 1 567 1 571 1.03e-179 519
Msa1170890 MtrunA17_Chr3g0133861 46.707 334 164 6 226 553 1 326 2.01e-101 310
Msa1170890 MtrunA17_Chr3g0133871 50.233 215 99 2 1 208 3 216 9.32e-73 232
Msa1170890 MtrunA17_Chr8g0382691 31.058 586 320 20 19 567 29 567 5.77e-72 241
Msa1170890 MtrunA17_Chr3g0118321 30.716 573 324 19 7 545 12 545 3.42e-70 236
Msa1170890 MtrunA17_Chr3g0118331 30.185 593 351 17 1 564 1 559 3.60e-70 236
Msa1170890 MtrunA17_Chr5g0436431 44.958 238 112 5 292 525 6 228 1.24e-60 200
Msa1170890 MtrunA17_Chr8g0374271 28.081 495 305 15 38 527 45 493 1.13e-42 160
Msa1170890 MtrunA17_Chr4g0056511 28.922 529 331 17 11 527 14 509 7.54e-42 159
Msa1170890 MtrunA17_Chr3g0079321 25.868 576 383 20 3 567 9 551 5.57e-40 153
Msa1170890 MtrunA17_Chr4g0024861 26.908 498 300 14 42 527 45 490 5.20e-38 147
Msa1170890 MtrunA17_Chr8g0374261 27.007 548 320 19 7 533 9 497 3.19e-37 145
Msa1170890 MtrunA17_Chr5g0402831 27.525 505 292 17 38 527 45 490 7.27e-37 144
Msa1170890 MtrunA17_Chr1g0157341 25.852 499 316 13 42 533 47 498 1.05e-36 143
Msa1170890 MtrunA17_Chr4g0038671 25.000 564 372 15 8 567 16 532 2.03e-36 142
Msa1170890 MtrunA17_Chr3g0143671 25.992 504 309 15 42 533 48 499 6.03e-36 141
Msa1170890 MtrunA17_Chr2g0322441 26.735 490 311 12 42 527 48 493 4.55e-35 139
Msa1170890 MtrunA17_Chr7g0234061 27.011 522 326 17 27 532 32 514 3.75e-33 134
Msa1170890 MtrunA17_Chr3g0118351 30.000 350 201 10 236 564 5 331 5.86e-33 129
Msa1170890 MtrunA17_Chr3g0121151 24.816 544 348 15 38 567 80 576 4.62e-32 130
Msa1170890 MtrunA17_Chr3g0121171 25.000 544 347 15 38 567 1190 1686 1.06e-31 131
Msa1170890 MtrunA17_Chr3g0121171 24.816 544 348 15 38 567 40 536 4.59e-31 129
Msa1170890 MtrunA17_Chr3g0121171 24.449 544 350 14 38 567 615 1111 1.01e-30 128
Msa1170890 MtrunA17_Chr3g0121171 24.297 498 324 14 80 567 1798 2252 8.55e-26 113
Msa1170890 MtrunA17_Chr3g0121161 25.185 540 351 14 38 567 80 576 1.64e-31 129
Msa1170890 MtrunA17_Chr4g0043261 24.953 537 343 16 11 533 7 497 7.83e-31 126
Msa1170890 MtrunA17_Chr4g0075071 26.030 534 336 20 5 527 9 494 1.08e-28 120
Msa1170890 MtrunA17_Chr4g0043251 25.520 529 355 14 42 567 45 537 1.71e-28 119
Msa1170890 MtrunA17_Chr3g0118341 35.829 187 111 6 1 183 1 182 1.60e-26 107
Msa1170890 MtrunA17_Chr4g0024641 25.328 458 291 16 76 527 1 413 1.34e-22 102
Msa1170890 MtrunA17_Chr5g0436411 42.667 75 40 1 8 79 5 79 2.73e-11 59.7
Msa1170890 MtrunA17_Chr3g0118931 36.232 69 44 0 477 545 10 78 8.16e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170890 AT2G40370.1 76.316 570 126 3 7 567 11 580 0.0 932
Msa1170890 AT5G05390.1 76.937 568 124 2 1 567 4 565 0.0 928
Msa1170890 AT2G30210.1 64.336 572 197 4 1 567 1 570 0.0 798
Msa1170890 AT5G07130.1 65.674 571 190 6 1 567 1 569 0.0 775
Msa1170890 AT5G07130.2 65.844 486 160 6 86 567 1 484 0.0 653
Msa1170890 AT5G07130.3 65.844 486 160 6 86 567 1 484 0.0 653
Msa1170890 AT5G09360.1 51.579 570 261 7 1 567 12 569 0.0 607
Msa1170890 AT2G29130.1 51.295 579 249 11 8 567 9 573 0.0 590
Msa1170890 AT5G60020.1 49.654 578 269 11 7 567 5 577 0.0 571
Msa1170890 AT5G03260.1 49.472 568 264 7 7 567 6 557 0.0 570
Msa1170890 AT5G60020.3 51.188 547 248 10 35 567 4 545 0.0 565
Msa1170890 AT2G38080.1 47.880 566 273 8 7 567 10 558 0.0 565
Msa1170890 AT5G01190.1 49.912 565 263 6 9 567 8 558 0.0 561
Msa1170890 AT3G09220.1 50.091 549 254 7 11 550 13 550 0.0 560
Msa1170890 AT5G58910.2 46.290 566 286 8 8 567 14 567 0.0 547
Msa1170890 AT5G01190.2 51.423 527 238 5 45 567 32 544 0.0 544
Msa1170890 AT5G58910.3 46.290 566 285 9 8 567 14 566 0.0 543
Msa1170890 AT5G48100.1 46.835 553 278 9 4 551 6 547 0.0 533
Msa1170890 AT2G46570.1 45.645 574 288 6 4 567 10 569 0.0 531
Msa1170890 AT1G18140.1 48.301 559 262 12 27 567 32 581 0.0 525
Msa1170890 AT5G01040.1 45.724 573 285 9 5 567 10 566 0.0 523
Msa1170890 AT5G60020.2 49.440 536 249 11 7 525 5 535 1.56e-180 520
Msa1170890 AT5G58910.1 46.580 541 264 9 33 567 2 523 4.29e-180 518
Msa1170890 AT5G01050.1 45.565 575 285 8 5 567 10 568 7.16e-179 518
Msa1170890 AT2G46570.2 46.667 495 242 5 81 567 4 484 1.31e-163 475
Msa1170890 AT3G09220.2 50.647 464 209 7 96 550 1 453 5.33e-163 473
Msa1170890 AT5G21100.1 31.434 579 325 20 19 564 19 558 1.19e-73 245
Msa1170890 AT4G39830.1 30.921 608 338 22 1 567 11 577 8.54e-72 241
Msa1170890 AT5G21105.1 30.651 584 340 18 11 564 25 573 1.83e-69 234
Msa1170890 AT5G21105.3 30.092 545 320 17 11 525 25 538 1.94e-59 207
Msa1170890 AT4G39830.2 30.134 521 285 20 85 567 3 482 7.82e-52 185
Msa1170890 AT4G39830.3 30.000 520 285 20 86 567 2 480 4.85e-51 182
Msa1170890 AT4G39830.4 29.480 519 278 18 85 567 3 469 4.18e-49 177
Msa1170890 AT5G66920.1 27.017 533 333 16 42 567 55 538 7.23e-44 164
Msa1170890 AT4G12420.1 27.586 551 341 20 1 532 1 512 1.97e-43 164
Msa1170890 AT4G12420.2 27.586 551 341 20 1 532 1 512 1.97e-43 164
Msa1170890 AT1G75790.1 26.527 524 344 12 7 527 10 495 1.57e-42 160
Msa1170890 AT5G51480.1 26.418 564 368 16 17 567 21 550 2.46e-41 158
Msa1170890 AT1G21860.1 25.898 529 338 15 11 533 16 496 3.79e-39 150
Msa1170890 AT1G76160.1 24.811 528 354 14 7 533 11 496 1.48e-38 149
Msa1170890 AT4G25240.2 26.562 576 371 18 8 567 11 550 1.23e-36 144
Msa1170890 AT4G25240.1 26.562 576 371 18 8 567 11 550 1.23e-36 144
Msa1170890 AT5G21105.2 29.781 366 215 11 208 564 50 382 1.49e-36 140
Msa1170890 AT1G21850.1 25.836 538 336 18 7 533 11 496 8.88e-36 141
Msa1170890 AT1G41830.1 25.651 538 340 19 6 533 10 497 1.19e-35 140
Msa1170890 AT5G48450.2 25.357 560 370 18 9 564 13 528 2.25e-34 137
Msa1170890 AT5G48450.1 25.357 560 370 18 9 564 13 528 2.72e-34 137
Msa1170890 AT4G22010.1 26.226 530 336 17 6 527 8 490 7.09e-33 132
Msa1170890 AT2G23630.1 27.239 536 329 17 42 567 48 532 4.42e-31 127
Msa1170890 AT2G23630.2 27.239 536 329 17 42 567 53 537 5.61e-31 127
Msa1170890 AT4G37160.1 26.224 572 356 16 10 567 15 534 1.12e-30 126
Msa1170890 AT1G55570.1 25.558 493 321 12 42 527 47 500 1.01e-28 120
Msa1170890 AT3G13390.1 25.391 512 332 12 25 527 29 499 4.96e-28 118
Msa1170890 AT1G55560.1 25.000 536 333 18 42 564 44 523 5.51e-28 118
Msa1170890 AT4G28090.1 23.944 497 325 15 45 533 49 500 1.54e-27 117
Msa1170890 AT3G13400.2 25.451 499 313 15 42 527 45 497 1.91e-25 110
Msa1170890 AT3G13400.1 25.451 499 313 15 42 527 45 497 1.91e-25 110
Msa1170890 AT4G37160.2 30.032 313 201 5 10 319 15 312 1.54e-24 107
Msa1170890 AT4G38420.1 23.279 494 329 15 42 527 48 499 2.54e-22 101
Msa1170890 AT4G38420.2 27.386 241 165 5 42 281 48 279 5.82e-20 93.2
Msa1170890 AT4G38420.3 27.386 241 165 5 42 281 48 279 1.10e-19 92.8

Find 152 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAAGCTTTAGAAGTTTA+AGG 0.083519 8_1:-266765 Msa1170890:CDS
ACCTATAGATTTACCATTAA+TGG 0.101466 8_1:-268157 Msa1170890:CDS
CACCTACTACTGTTAGTTTA+TGG 0.135494 8_1:+267067 None:intergenic
TGTACCTTCTTGTCCATTAA+TGG 0.180702 8_1:+268144 None:intergenic
TGGCTTAGAGCCACAGTTTA+TGG 0.186697 8_1:-268097 Msa1170890:CDS
AAAACATATACGCTCATATT+TGG 0.224570 8_1:+265274 None:intergenic
CGTGAAACACCCATTCTTCT+AGG 0.253813 8_1:-268019 Msa1170890:intron
ACAATTGTTCCAATTGATTC+AGG 0.259031 8_1:-267156 Msa1170890:CDS
TATATTGTTGCTGAGGGATT+TGG 0.270036 8_1:-266343 Msa1170890:CDS
ACTGTTGCTGTACCTGTTAA+TGG 0.271612 8_1:-266259 Msa1170890:CDS
TCTGATGCATACACTATTAA+TGG 0.273121 8_1:-267596 Msa1170890:CDS
ATTGTTTGTTTCCCTGCATT+GGG 0.279523 8_1:-265509 Msa1170890:three_prime_UTR
CCAACTTTGGAAATTAATAA+TGG 0.283923 8_1:-269027 Msa1170890:CDS
AAAGTTACTAAGTTGAGATT+TGG 0.284792 8_1:-266448 Msa1170890:CDS
GGTGGCATGCTCATAGTTCA+TGG 0.302145 8_1:-268117 Msa1170890:CDS
TGAGGACCTGCCTTTGTGTT+AGG 0.313647 8_1:-265579 Msa1170890:exon
GTGCAGCATTGATTACTCTT+AGG 0.316195 8_1:+267121 None:intergenic
GTGTATGCATCAGATATATT+TGG 0.328938 8_1:+267605 None:intergenic
CATTGTTTGTTTCCCTGCAT+TGG 0.329323 8_1:-265510 Msa1170890:three_prime_UTR
CTAGTATCAATTTAACCAAT+AGG 0.331374 8_1:+265370 None:intergenic
GGACATTGAGTCACAAATTC+TGG 0.334936 8_1:+268202 None:intergenic
AGATCTTCATCAATTTCATT+AGG 0.335973 8_1:+266730 None:intergenic
AGAGGATGGAGAAGGGCTAT+TGG 0.338124 8_1:-265621 Msa1170890:CDS
ACAACCAATGTTCTCATGTT+AGG 0.341290 8_1:-267018 Msa1170890:CDS
TGTTCACATTGGATGGGGTT+TGG 0.346069 8_1:-265660 Msa1170890:CDS
GTCCTCAGGAGGAGCTTCTA+TGG 0.350489 8_1:+265595 None:intergenic
AATCACCCTATTCATCTTCA+TGG 0.351556 8_1:-266376 Msa1170890:CDS
TCATATCCATGAAGATGAAT+AGG 0.353366 8_1:+266370 None:intergenic
CCATTATTAATTTCCAAAGT+TGG 0.356421 8_1:+269027 None:intergenic
GTTTGATGTATGTAGGTGTT+TGG 0.364623 8_1:-265703 Msa1170890:intron
TTTGTTTCTCCTGAATCAAT+TGG 0.365718 8_1:+267147 None:intergenic
CGCCGGGCGCGCTTACCAAT+CGG 0.373787 8_1:-266935 Msa1170890:CDS
GGATAAGCATCTCCTTCCTT+AGG 0.376333 8_1:+268058 None:intergenic
TAGTATCAATTTAACCAATA+GGG 0.376992 8_1:+265371 None:intergenic
AATTAATAATGGAGATACTT+TGG 0.377624 8_1:-269016 Msa1170890:CDS
GAGATTTGGATCAAGGGTTC+AGG 0.378810 8_1:-266434 Msa1170890:CDS
ACAATTTCCTGGTCCAACTT+TGG 0.400549 8_1:-269040 Msa1170890:CDS
ATAACTGCCCAACCATTAAC+AGG 0.400604 8_1:+266247 None:intergenic
AGAATGGGTGTTTCACGCTT+TGG 0.403573 8_1:+268025 None:intergenic
GGATTAGAACATCAGTGGTT+TGG 0.403888 8_1:+266989 None:intergenic
CTAAGTTGAGATTTGGATCA+AGG 0.404145 8_1:-266441 Msa1170890:CDS
TGCTGTACCTGTTAATGGTT+GGG 0.408222 8_1:-266254 Msa1170890:CDS
TCCATTAATGGTAAATCTAT+AGG 0.411836 8_1:+268156 None:intergenic
CAATGACCGACTCACATTAC+CGG 0.413180 8_1:+266492 None:intergenic
AGCCGATTGGTAAGCGCGCC+CGG 0.414132 8_1:+266933 None:intergenic
CCGGCGATGTAGTATCTTGA+TGG 0.420568 8_1:+266952 None:intergenic
GTTACAATGTCACCATTCAT+TGG 0.426411 8_1:-268969 Msa1170890:intron
ACTGTGAATGGACAATTTCC+TGG 0.436760 8_1:-269051 Msa1170890:CDS
ATCCTGCAGGCTCATAAACT+TGG 0.437751 8_1:-266574 Msa1170890:CDS
TTTGTAATTGATATGTTATG+AGG 0.438070 8_1:-265333 Msa1170890:three_prime_UTR
TTTCATTTAGAGATAAAATT+GGG 0.438549 8_1:-265451 Msa1170890:three_prime_UTR
CTTGGATGTTCACATTGGAT+GGG 0.442663 8_1:-265666 Msa1170890:CDS
ATGATCATTACCTAGAAGAA+TGG 0.443551 8_1:+268009 None:intergenic
GATAGTGTCACAAACCCTAT+TGG 0.446797 8_1:-265385 Msa1170890:three_prime_UTR
TAACTTTCTCCAGGACGAAT+AGG 0.449717 8_1:+268181 None:intergenic
ACTTGGATGTTCACATTGGA+TGG 0.450150 8_1:-265667 Msa1170890:CDS
GCAGGTAATGAAGGCATGAT+TGG 0.454006 8_1:+266820 None:intergenic
CATATCCATGAAGATGAATA+GGG 0.455044 8_1:+266371 None:intergenic
GTGAGACAAGCCACACAAAC+AGG 0.461238 8_1:-267635 Msa1170890:CDS
GTGTTGCACAGCCTCTTCAC+TGG 0.461801 8_1:+269087 None:intergenic
CAATGTGTGAATGAAGGTTA+AGG 0.470611 8_1:+269341 None:intergenic
TCATTGTGGCAACCGATTCA+AGG 0.473488 8_1:-266475 Msa1170890:CDS
TCATCACCTTGTCCTGCAAA+GGG 0.474167 8_1:-266859 Msa1170890:CDS
TAACACAAAGGCAGGTCCTC+AGG 0.478994 8_1:+265581 None:intergenic
TTGCTGTACCTGTTAATGGT+TGG 0.479566 8_1:-266255 Msa1170890:CDS
CAAATGAGCATCACTGTGAA+TGG 0.479962 8_1:-269063 Msa1170890:CDS
TGATGATTTGTATTCAAGAA+TGG 0.480556 8_1:+266876 None:intergenic
GTAACTTTAGTCCCTTGAAT+CGG 0.482864 8_1:+266463 None:intergenic
AGATTTGTTGCTGACAATCC+AGG 0.489827 8_1:-266223 Msa1170890:intron
TGATCATTACCTAGAAGAAT+GGG 0.490111 8_1:+268010 None:intergenic
AAACTCGTGCTCATGAACTT+TGG 0.490870 8_1:+269227 None:intergenic
ACCTTGTTGATCCACCTATG+AGG 0.490977 8_1:-266285 Msa1170890:CDS
ACAGCAACAGTGTTCCTCAT+AGG 0.495749 8_1:+266271 None:intergenic
TTGGATGTTCACATTGGATG+GGG 0.496559 8_1:-265665 Msa1170890:CDS
TTGGATTATGCATTGTCACT+TGG 0.496947 8_1:-265684 Msa1170890:CDS
AACCATAAACTAACAGTAGT+AGG 0.497147 8_1:-267069 Msa1170890:CDS
GGGGTTAGACAAATCAGAAC+AGG 0.499855 8_1:-268238 Msa1170890:CDS
TGATTTGCATTAAAATTCGA+TGG 0.500850 8_1:+266673 None:intergenic
GATAAGCATCTCCTTCCTTA+GGG 0.506054 8_1:+268059 None:intergenic
GCTTGTCTCACAACATCCAT+AGG 0.506366 8_1:+267647 None:intergenic
TCAAAACAATGTGTGAATGA+AGG 0.509511 8_1:+269335 None:intergenic
ATGAGAACATTGGTTGTGAA+TGG 0.509668 8_1:+267024 None:intergenic
TCACGCTTTGGCTTAGTGAA+AGG 0.510131 8_1:+268037 None:intergenic
CTCCAAGTTTATGAGCCTGC+AGG 0.510477 8_1:+266572 None:intergenic
AGAACATCAGTGGTTTGGCC+AGG 0.514268 8_1:+266994 None:intergenic
ATCATCACCTTGTCCTGCAA+AGG 0.514426 8_1:-266860 Msa1170890:CDS
GTGATATTATTACCAATGAA+TGG 0.515384 8_1:+268957 None:intergenic
AGATGAATAGGGTGATTCTC+AGG 0.517564 8_1:+266382 None:intergenic
ATCAGAACAGGATGGGCTGA+TGG 0.518148 8_1:-268226 Msa1170890:CDS
TTGATGGTGGTTGGTCACCT+TGG 0.518654 8_1:+266968 None:intergenic
GAAGTGAACCGTGTACCGTT+CGG 0.519056 8_1:+266640 None:intergenic
TTTGCAATTGTGAAGAAAAG+AGG 0.519484 8_1:+267090 None:intergenic
ACTCAATGTCCTATTCGTCC+TGG 0.520865 8_1:-268190 Msa1170890:CDS
GATTATCCTAACACAAAGGC+AGG 0.522293 8_1:+265573 None:intergenic
GCTCATAAACTTGGAGTACA+AGG 0.524236 8_1:-266565 Msa1170890:CDS
CAGCATTGATTACTCTTAGG+AGG 0.526575 8_1:+267124 None:intergenic
TTTACCATTAATGGACAAGA+AGG 0.529526 8_1:-268148 Msa1170890:CDS
GTGTTTGTGTCATTGTAAGC+AGG 0.530023 8_1:+266802 None:intergenic
ATGGTGGGATGCAAACCCTA+TGG 0.535899 8_1:-267663 Msa1170890:CDS
GTTAAGGTTACAAATTGCAA+TGG 0.537808 8_1:+269357 None:intergenic
TCATTGTAAGCAGGTAATGA+AGG 0.540128 8_1:+266811 None:intergenic
TGATTTCTATATTGTTGCTG+AGG 0.540678 8_1:-266350 Msa1170890:CDS
CTTTACAAGTGCTCTACCAA+AGG 0.542011 8_1:-267560 Msa1170890:intron
TTTAATGCAAATCAATGTCA+AGG 0.544640 8_1:-266664 Msa1170890:CDS
ATCACCTTGTCCTGCAAAGG+GGG 0.545026 8_1:-266857 Msa1170890:CDS
CTATAGGTGTAACTTTCTCC+AGG 0.545148 8_1:+268172 None:intergenic
TAAGTTGAGATTTGGATCAA+GGG 0.547755 8_1:-266440 Msa1170890:CDS
CCATCAAGATACTACATCGC+CGG 0.549313 8_1:-266952 Msa1170890:CDS
GATTTCTATATTGTTGCTGA+GGG 0.549381 8_1:-266349 Msa1170890:CDS
TGGAGCTGCTCCTGTTTGTG+TGG 0.553190 8_1:+267625 None:intergenic
CATTGTGGCAACCGATTCAA+GGG 0.556129 8_1:-266474 Msa1170890:CDS
ACCGGTGTAATCAAATTGCA+CGG 0.556156 8_1:+266510 None:intergenic
GTCAAGGACCGAACGGTACA+CGG 0.560784 8_1:-266648 Msa1170890:CDS
AGCTCTAATCATTCACCCTA+AGG 0.560869 8_1:-268074 Msa1170890:CDS
CATCAAGATACTACATCGCC+GGG 0.561153 8_1:-266951 Msa1170890:CDS
ACCACTGATGTTCTAATCCA+AGG 0.563616 8_1:-266985 Msa1170890:CDS
TTAATTTCCAAAGTTGGACC+AGG 0.564251 8_1:+269033 None:intergenic
GACAAGAAGGTACACTTTGG+TGG 0.574088 8_1:-268135 Msa1170890:CDS
TTGTTTAATACTCTAAACAA+TGG 0.576331 8_1:-269307 Msa1170890:exon
TTGTTTGTTTCCCTGCATTG+GGG 0.580260 8_1:-265508 Msa1170890:three_prime_UTR
CTTGTCTCACAACATCCATA+GGG 0.581965 8_1:+267648 None:intergenic
TACACTATTAATGGTCAACC+TGG 0.583665 8_1:-267587 Msa1170890:CDS
CTAATCATTCACCCTAAGGA+AGG 0.586825 8_1:-268070 Msa1170890:CDS
TGTAGTATCTTGATGGTGGT+TGG 0.588008 8_1:+266959 None:intergenic
GGTTGTGAATGGTTTGACAT+AGG 0.595120 8_1:+267035 None:intergenic
ACCTTGGATTAGAACATCAG+TGG 0.604071 8_1:+266984 None:intergenic
ATGGACAAGAAGGTACACTT+TGG 0.605647 8_1:-268138 Msa1170890:CDS
TTTGTATTCAAGAATGGCAG+TGG 0.605780 8_1:+266882 None:intergenic
ATTGTTGAGTCCTAATCCAA+TGG 0.608848 8_1:+266699 None:intergenic
TAGACAAATCAGAACAGGAT+GGG 0.611575 8_1:-268233 Msa1170890:CDS
TACAAGCAACTCCAGTGAAG+AGG 0.611814 8_1:-269098 Msa1170890:CDS
GAGCACTTGTAAAGATCACC+AGG 0.619435 8_1:+267569 None:intergenic
GCAACAGTGTTCCTCATAGG+TGG 0.621280 8_1:+266274 None:intergenic
TGTCACTTGGATGTTCACAT+TGG 0.623581 8_1:-265671 Msa1170890:CDS
GTGTAATCAAATTGCACGGG+AGG 0.625603 8_1:+266514 None:intergenic
CCGGTGTAATCAAATTGCAC+GGG 0.626025 8_1:+266511 None:intergenic
ATTACACCGGTAATGTGAGT+CGG 0.633330 8_1:-266498 Msa1170890:CDS
GTCCATAGAAGCTCCTCCTG+AGG 0.638740 8_1:-265597 Msa1170890:CDS
AATGTTCTCATGTTAGGACC+TGG 0.640008 8_1:-267012 Msa1170890:CDS
CACAAAGGCAGGTCCTCAGG+AGG 0.658358 8_1:+265584 None:intergenic
GGGTTTGTGACACTATCAGA+TGG 0.658383 8_1:+265391 None:intergenic
TCACCTTGTCCTGCAAAGGG+GGG 0.659071 8_1:-266856 Msa1170890:CDS
TTTGGATTATCCTAACACAA+AGG 0.661322 8_1:+265569 None:intergenic
GTAATGTGAGTCGGTCATTG+TGG 0.663037 8_1:-266489 Msa1170890:CDS
TCCTCATAGGTGGATCAACA+AGG 0.663984 8_1:+266284 None:intergenic
AATCAATGTCAAGGACCGAA+CGG 0.668939 8_1:-266655 Msa1170890:CDS
CCCGTGCAATTTGATTACAC+CGG 0.670640 8_1:-266511 Msa1170890:CDS
CATCACCTTGTCCTGCAAAG+GGG 0.673225 8_1:-266858 Msa1170890:CDS
TTAGACAAATCAGAACAGGA+TGG 0.677485 8_1:-268234 Msa1170890:CDS
AGGTCCTAACATGAGAACAT+TGG 0.679248 8_1:+267014 None:intergenic
GATTAGAGCTCCATAAACTG+TGG 0.691733 8_1:+268087 None:intergenic
GCGATGTAGTATCTTGATGG+TGG 0.696908 8_1:+266955 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTTAAAAAAAAT+AGG + chr8_1:265764-265783 None:intergenic 0.0%
!!! AATATTTTTTTAAAAAAAAT+AGG + chr8_1:265764-265783 None:intergenic 0.0%
!! TTAACAACTAAAAATAAAAA+GGG + chr8_1:265455-265474 None:intergenic 10.0%
!! ATTAACAACTAAAAATAAAA+AGG + chr8_1:265456-265475 None:intergenic 10.0%
!! ACTATAAAAATACTATTATA+TGG + chr8_1:266195-266214 None:intergenic 10.0%
!!! TATAATAGTATTTTTATAGT+AGG - chr8_1:266195-266214 Msa1170890:intron 10.0%
!!! ATAATAGTATTTTTATAGTA+GGG - chr8_1:266196-266215 Msa1170890:intron 10.0%
!!! TTTTTTCAATTTGTTAATTA+AGG - chr8_1:266805-266824 Msa1170890:CDS 10.0%
!!! ATGATGATTATTTTTTAATT+AGG - chr8_1:266940-266959 Msa1170890:CDS 10.0%
!!! TGATGATTATTTTTTAATTA+GGG - chr8_1:266941-266960 Msa1170890:CDS 10.0%
!! CAATTAATTTATTATGTATA+TGG + chr8_1:267298-267317 None:intergenic 10.0%
!!! ATTTTGAATAAAATTTATGT+AGG + chr8_1:268535-268554 None:intergenic 10.0%
!!! GAAAAAATTGTAAATTTTAT+AGG - chr8_1:268668-268687 Msa1170890:intron 10.0%
!! AACTTTATCATAAAAATTAA+GGG + chr8_1:268711-268730 None:intergenic 10.0%
!! AAACTTTATCATAAAAATTA+AGG + chr8_1:268712-268731 None:intergenic 10.0%
!!! AATTACAAATTTTCATAATT+TGG + chr8_1:269081-269100 None:intergenic 10.0%
!! TTAACAACTAAAAATAAAAA+GGG + chr8_1:265455-265474 None:intergenic 10.0%
!! ATTAACAACTAAAAATAAAA+AGG + chr8_1:265456-265475 None:intergenic 10.0%
!! ACTATAAAAATACTATTATA+TGG + chr8_1:266195-266214 None:intergenic 10.0%
!!! TATAATAGTATTTTTATAGT+AGG - chr8_1:266195-266214 Msa1170890:intron 10.0%
!!! ATAATAGTATTTTTATAGTA+GGG - chr8_1:266196-266215 Msa1170890:intron 10.0%
!!! TTTTTTCAATTTGTTAATTA+AGG - chr8_1:266805-266824 Msa1170890:CDS 10.0%
!!! ATGATGATTATTTTTTAATT+AGG - chr8_1:266940-266959 Msa1170890:CDS 10.0%
!!! TGATGATTATTTTTTAATTA+GGG - chr8_1:266941-266960 Msa1170890:CDS 10.0%
!! CAATTAATTTATTATGTATA+TGG + chr8_1:267298-267317 None:intergenic 10.0%
!!! ATTTTGAATAAAATTTATGT+AGG + chr8_1:268535-268554 None:intergenic 10.0%
!!! GAAAAAATTGTAAATTTTAT+AGG - chr8_1:268668-268687 Msa1170890:intron 10.0%
!! AACTTTATCATAAAAATTAA+GGG + chr8_1:268711-268730 None:intergenic 10.0%
!! AAACTTTATCATAAAAATTA+AGG + chr8_1:268712-268731 None:intergenic 10.0%
!!! AATTACAAATTTTCATAATT+TGG + chr8_1:269081-269100 None:intergenic 10.0%
!! GGAGATTAATTATAATTAAT+TGG - chr8_1:265486-265505 Msa1170890:three_prime_UTR 15.0%
!! TTATATTCCTATTAGTATAT+AGG - chr8_1:265868-265887 Msa1170890:intron 15.0%
!! AGTGTAATAACAAATTTAAT+TGG - chr8_1:265942-265961 Msa1170890:intron 15.0%
!! TCAAAAATCAAAAACAAAAA+AGG + chr8_1:266145-266164 None:intergenic 15.0%
!! TAAAAATACTATTATATGGA+AGG + chr8_1:266191-266210 None:intergenic 15.0%
!!! ACCACAATTTAAAATTTTAA+TGG - chr8_1:266269-266288 Msa1170890:CDS 15.0%
!!! ACCATTAAAATTTTAAATTG+TGG + chr8_1:266273-266292 None:intergenic 15.0%
!! TGCAAATAATCAATAATTTA+TGG - chr8_1:266335-266354 Msa1170890:CDS 15.0%
!! AGATAAGAATTAAAATAAGT+TGG + chr8_1:266763-266782 None:intergenic 15.0%
!!! GATGATTATTTTTTAATTAG+GGG - chr8_1:266942-266961 Msa1170890:CDS 15.0%
!!! TAAGCAAAAATCAATATTTT+AGG + chr8_1:267327-267346 None:intergenic 15.0%
!!! TTTTCATTTAGAGATAAAAT+TGG - chr8_1:269177-269196 Msa1170890:intron 15.0%
!! TTTCATTTAGAGATAAAATT+GGG - chr8_1:269178-269197 Msa1170890:intron 15.0%
!! GGAGATTAATTATAATTAAT+TGG - chr8_1:265486-265505 Msa1170890:three_prime_UTR 15.0%
!! TTATATTCCTATTAGTATAT+AGG - chr8_1:265868-265887 Msa1170890:intron 15.0%
!! AGTGTAATAACAAATTTAAT+TGG - chr8_1:265942-265961 Msa1170890:intron 15.0%
!! TCAAAAATCAAAAACAAAAA+AGG + chr8_1:266145-266164 None:intergenic 15.0%
!! TAAAAATACTATTATATGGA+AGG + chr8_1:266191-266210 None:intergenic 15.0%
!!! ACCACAATTTAAAATTTTAA+TGG - chr8_1:266269-266288 Msa1170890:CDS 15.0%
!!! ACCATTAAAATTTTAAATTG+TGG + chr8_1:266273-266292 None:intergenic 15.0%
!! TGCAAATAATCAATAATTTA+TGG - chr8_1:266335-266354 Msa1170890:CDS 15.0%
!! AGATAAGAATTAAAATAAGT+TGG + chr8_1:266763-266782 None:intergenic 15.0%
!!! GATGATTATTTTTTAATTAG+GGG - chr8_1:266942-266961 Msa1170890:CDS 15.0%
!!! TAAGCAAAAATCAATATTTT+AGG + chr8_1:267327-267346 None:intergenic 15.0%
!!! TTTTCATTTAGAGATAAAAT+TGG - chr8_1:269177-269196 Msa1170890:intron 15.0%
!! TTTCATTTAGAGATAAAATT+GGG - chr8_1:269178-269197 Msa1170890:intron 15.0%
!! TTGTTTAATACTCTAAACAA+TGG - chr8_1:265322-265341 Msa1170890:three_prime_UTR 20.0%
!! TTAGTTGTTAATTTAACCTT+TGG - chr8_1:265464-265483 Msa1170890:three_prime_UTR 20.0%
!! TAGTTGTTAATTTAACCTTT+GGG - chr8_1:265465-265484 Msa1170890:three_prime_UTR 20.0%
!! AATTATAATTAATCTCCCAA+AGG + chr8_1:265483-265502 None:intergenic 20.0%
!!! AATTAATAATGGAGATACTT+TGG - chr8_1:265613-265632 Msa1170890:CDS 20.0%
!!! TACTTTTCCTATATACTAAT+AGG + chr8_1:265878-265897 None:intergenic 20.0%
!! AAAACTAAAAAGTAACTAGA+TGG + chr8_1:266091-266110 None:intergenic 20.0%
!! ATGCATGCTATAATTTATAA+AGG - chr8_1:266302-266321 Msa1170890:CDS 20.0%
!!! TTATTGCATTTTGAATCTTT+AGG - chr8_1:266365-266384 Msa1170890:CDS 20.0%
!!! ATTTTTATATCTGATGTAAC+TGG - chr8_1:266694-266713 Msa1170890:CDS 20.0%
!! AATCTTTGTCTAAAAAGAAA+AGG + chr8_1:266882-266901 None:intergenic 20.0%
!!! TTATTTTTTAATTAGGGGAA+TGG - chr8_1:266947-266966 Msa1170890:CDS 20.0%
!! ACATAAAATAATCAAACCTT+TGG + chr8_1:267088-267107 None:intergenic 20.0%
!!! TATATGGTCTTTTTAAATGT+CGG + chr8_1:267282-267301 None:intergenic 20.0%
!!! TTTTTGCTTATAATAGTGAT+CGG - chr8_1:267337-267356 Msa1170890:intron 20.0%
!! AATGATCATATGTCAAATAA+TGG + chr8_1:267438-267457 None:intergenic 20.0%
!! ATTATTTGACATATGATCAT+TGG - chr8_1:267437-267456 Msa1170890:intron 20.0%
!!! ATTAGGGTTAATTATGTTTT+CGG - chr8_1:268472-268491 Msa1170890:intron 20.0%
!! TTGAATAAAATTTATGTAGG+AGG + chr8_1:268532-268551 None:intergenic 20.0%
!! GTCTCAATAAAATCAAAATA+AGG - chr8_1:268610-268629 Msa1170890:intron 20.0%
!! ATGTTTGATCTTATGTAATT+TGG - chr8_1:268901-268920 Msa1170890:intron 20.0%
!! TAGTATCAATTTAACCAATA+GGG + chr8_1:269261-269280 None:intergenic 20.0%
!! TTTGTAATTGATATGTTATG+AGG - chr8_1:269296-269315 Msa1170890:exon 20.0%
!! TTGTTTAATACTCTAAACAA+TGG - chr8_1:265322-265341 Msa1170890:three_prime_UTR 20.0%
!! TTAGTTGTTAATTTAACCTT+TGG - chr8_1:265464-265483 Msa1170890:three_prime_UTR 20.0%
!! TAGTTGTTAATTTAACCTTT+GGG - chr8_1:265465-265484 Msa1170890:three_prime_UTR 20.0%
!! AATTATAATTAATCTCCCAA+AGG + chr8_1:265483-265502 None:intergenic 20.0%
!!! AATTAATAATGGAGATACTT+TGG - chr8_1:265613-265632 Msa1170890:CDS 20.0%
!!! TACTTTTCCTATATACTAAT+AGG + chr8_1:265878-265897 None:intergenic 20.0%
!! AAAACTAAAAAGTAACTAGA+TGG + chr8_1:266091-266110 None:intergenic 20.0%
!! ATGCATGCTATAATTTATAA+AGG - chr8_1:266302-266321 Msa1170890:CDS 20.0%
!!! TTATTGCATTTTGAATCTTT+AGG - chr8_1:266365-266384 Msa1170890:CDS 20.0%
!!! ATTTTTATATCTGATGTAAC+TGG - chr8_1:266694-266713 Msa1170890:CDS 20.0%
!! AATCTTTGTCTAAAAAGAAA+AGG + chr8_1:266882-266901 None:intergenic 20.0%
!!! TTATTTTTTAATTAGGGGAA+TGG - chr8_1:266947-266966 Msa1170890:CDS 20.0%
!! ACATAAAATAATCAAACCTT+TGG + chr8_1:267088-267107 None:intergenic 20.0%
!!! TATATGGTCTTTTTAAATGT+CGG + chr8_1:267282-267301 None:intergenic 20.0%
!!! TTTTTGCTTATAATAGTGAT+CGG - chr8_1:267337-267356 Msa1170890:intron 20.0%
!! AATGATCATATGTCAAATAA+TGG + chr8_1:267438-267457 None:intergenic 20.0%
!! ATTATTTGACATATGATCAT+TGG - chr8_1:267437-267456 Msa1170890:intron 20.0%
!!! ATTAGGGTTAATTATGTTTT+CGG - chr8_1:268472-268491 Msa1170890:intron 20.0%
!! TTGAATAAAATTTATGTAGG+AGG + chr8_1:268532-268551 None:intergenic 20.0%
!! GTCTCAATAAAATCAAAATA+AGG - chr8_1:268610-268629 Msa1170890:intron 20.0%
!! ATGTTTGATCTTATGTAATT+TGG - chr8_1:268901-268920 Msa1170890:intron 20.0%
!! TAGTATCAATTTAACCAATA+GGG + chr8_1:269261-269280 None:intergenic 20.0%
!! TTTGTAATTGATATGTTATG+AGG - chr8_1:269296-269315 Msa1170890:exon 20.0%
! AAGAAAAATTGCTAAGAAGA+TGG + chr8_1:265360-265379 None:intergenic 25.0%
! GCATGTTTATTAATGTGAAA+AGG - chr8_1:265508-265527 Msa1170890:three_prime_UTR 25.0%
! CCATTATTAATTTCCAAAGT+TGG + chr8_1:265605-265624 None:intergenic 25.0%
!! CCAACTTTGGAAATTAATAA+TGG - chr8_1:265602-265621 Msa1170890:CDS 25.0%
! GTGATATTATTACCAATGAA+TGG + chr8_1:265675-265694 None:intergenic 25.0%
! GGAAAAGTAAATGATAGATA+CGG - chr8_1:265889-265908 Msa1170890:intron 25.0%
! ATAAATAGCAATGCTCAAAA+AGG - chr8_1:266007-266026 Msa1170890:intron 25.0%
! TAAATAGCAATGCTCAAAAA+GGG - chr8_1:266008-266027 Msa1170890:intron 25.0%
! ACCTATAGATTTACCATTAA+TGG - chr8_1:266472-266491 Msa1170890:CDS 25.0%
! TCCATTAATGGTAAATCTAT+AGG + chr8_1:266476-266495 None:intergenic 25.0%
! AGAATTCAATAAGTGATTGA+AGG + chr8_1:267384-267403 None:intergenic 25.0%
! AATGGAAAAATGTTTAGTCA+TGG + chr8_1:267420-267439 None:intergenic 25.0%
!! TGATGATTTGTATTCAAGAA+TGG + chr8_1:267756-267775 None:intergenic 25.0%
!!! GTAAAAGCTTTAGAAGTTTA+AGG - chr8_1:267864-267883 Msa1170890:intron 25.0%
! AGATCTTCATCAATTTCATT+AGG + chr8_1:267902-267921 None:intergenic 25.0%
!! TGATTTGCATTAAAATTCGA+TGG + chr8_1:267959-267978 None:intergenic 25.0%
! TTTAATGCAAATCAATGTCA+AGG - chr8_1:267965-267984 Msa1170890:intron 25.0%
!! AAAGTTACTAAGTTGAGATT+TGG - chr8_1:268181-268200 Msa1170890:CDS 25.0%
!!! ATTTTGAAGCATCTTTCTTA+GGG + chr8_1:268321-268340 None:intergenic 25.0%
!!! AATTTTGAAGCATCTTTCTT+AGG + chr8_1:268322-268341 None:intergenic 25.0%
! AAAGTTTCACAAACATGATA+TGG - chr8_1:268725-268744 Msa1170890:intron 25.0%
! AGAAAAATGAAACAGAACAA+TGG + chr8_1:269158-269177 None:intergenic 25.0%
! CTAGTATCAATTTAACCAAT+AGG + chr8_1:269262-269281 None:intergenic 25.0%
! AAAACATATACGCTCATATT+TGG + chr8_1:269358-269377 None:intergenic 25.0%
! AAGAAAAATTGCTAAGAAGA+TGG + chr8_1:265360-265379 None:intergenic 25.0%
! GCATGTTTATTAATGTGAAA+AGG - chr8_1:265508-265527 Msa1170890:three_prime_UTR 25.0%
! CCATTATTAATTTCCAAAGT+TGG + chr8_1:265605-265624 None:intergenic 25.0%
!! CCAACTTTGGAAATTAATAA+TGG - chr8_1:265602-265621 Msa1170890:CDS 25.0%
! GTGATATTATTACCAATGAA+TGG + chr8_1:265675-265694 None:intergenic 25.0%
! GGAAAAGTAAATGATAGATA+CGG - chr8_1:265889-265908 Msa1170890:intron 25.0%
! ATAAATAGCAATGCTCAAAA+AGG - chr8_1:266007-266026 Msa1170890:intron 25.0%
! TAAATAGCAATGCTCAAAAA+GGG - chr8_1:266008-266027 Msa1170890:intron 25.0%
! ACCTATAGATTTACCATTAA+TGG - chr8_1:266472-266491 Msa1170890:CDS 25.0%
! TCCATTAATGGTAAATCTAT+AGG + chr8_1:266476-266495 None:intergenic 25.0%
! AGAATTCAATAAGTGATTGA+AGG + chr8_1:267384-267403 None:intergenic 25.0%
! AATGGAAAAATGTTTAGTCA+TGG + chr8_1:267420-267439 None:intergenic 25.0%
!! TGATGATTTGTATTCAAGAA+TGG + chr8_1:267756-267775 None:intergenic 25.0%
!!! GTAAAAGCTTTAGAAGTTTA+AGG - chr8_1:267864-267883 Msa1170890:intron 25.0%
! AGATCTTCATCAATTTCATT+AGG + chr8_1:267902-267921 None:intergenic 25.0%
!! TGATTTGCATTAAAATTCGA+TGG + chr8_1:267959-267978 None:intergenic 25.0%
! TTTAATGCAAATCAATGTCA+AGG - chr8_1:267965-267984 Msa1170890:intron 25.0%
!! AAAGTTACTAAGTTGAGATT+TGG - chr8_1:268181-268200 Msa1170890:CDS 25.0%
!!! ATTTTGAAGCATCTTTCTTA+GGG + chr8_1:268321-268340 None:intergenic 25.0%
!!! AATTTTGAAGCATCTTTCTT+AGG + chr8_1:268322-268341 None:intergenic 25.0%
! AAAGTTTCACAAACATGATA+TGG - chr8_1:268725-268744 Msa1170890:intron 25.0%
! AGAAAAATGAAACAGAACAA+TGG + chr8_1:269158-269177 None:intergenic 25.0%
! CTAGTATCAATTTAACCAAT+AGG + chr8_1:269262-269281 None:intergenic 25.0%
! AAAACATATACGCTCATATT+TGG + chr8_1:269358-269377 None:intergenic 25.0%
TCAAAACAATGTGTGAATGA+AGG + chr8_1:265297-265316 None:intergenic 30.0%
! CTTAGCAATTTTTCTTCTCT+TGG - chr8_1:265364-265383 Msa1170890:three_prime_UTR 30.0%
TAAATGAGTTAAGACAAGTC+AGG - chr8_1:266058-266077 Msa1170890:intron 30.0%
AAATGAGTTAAGACAAGTCA+GGG - chr8_1:266059-266078 Msa1170890:intron 30.0%
! CATTTTGAATCTTTAGGCAT+GGG - chr8_1:266371-266390 Msa1170890:CDS 30.0%
! ATTTTGAATCTTTAGGCATG+GGG - chr8_1:266372-266391 Msa1170890:CDS 30.0%
! TTTACCATTAATGGACAAGA+AGG - chr8_1:266481-266500 Msa1170890:CDS 30.0%
TGATCATTACCTAGAAGAAT+GGG + chr8_1:266622-266641 None:intergenic 30.0%
ATGATCATTACCTAGAAGAA+TGG + chr8_1:266623-266642 None:intergenic 30.0%
GACAAAGATTATGTTCATGA+TGG - chr8_1:266892-266911 Msa1170890:CDS 30.0%
!!! TTTTTTAATTAGGGGAATGG+TGG - chr8_1:266950-266969 Msa1170890:CDS 30.0%
!! TTTTTAATTAGGGGAATGGT+GGG - chr8_1:266951-266970 Msa1170890:CDS 30.0%
GTGTATGCATCAGATATATT+TGG + chr8_1:267027-267046 None:intergenic 30.0%
TCTGATGCATACACTATTAA+TGG - chr8_1:267033-267052 Msa1170890:CDS 30.0%
! ACAATTGTTCCAATTGATTC+AGG - chr8_1:267473-267492 Msa1170890:intron 30.0%
! TTTGTTTCTCCTGAATCAAT+TGG + chr8_1:267485-267504 None:intergenic 30.0%
TTTGCAATTGTGAAGAAAAG+AGG + chr8_1:267542-267561 None:intergenic 30.0%
AACCATAAACTAACAGTAGT+AGG - chr8_1:267560-267579 Msa1170890:intron 30.0%
! GAAGATCTTTTCTTTACCAT+TGG - chr8_1:267914-267933 Msa1170890:intron 30.0%
! CTTTTCTTTACCATTGGATT+AGG - chr8_1:267920-267939 Msa1170890:intron 30.0%
! TAAGTTGAGATTTGGATCAA+GGG - chr8_1:268189-268208 Msa1170890:CDS 30.0%
CATATCCATGAAGATGAATA+GGG + chr8_1:268261-268280 None:intergenic 30.0%
TCATATCCATGAAGATGAAT+AGG + chr8_1:268262-268281 None:intergenic 30.0%
TGATTTCTATATTGTTGCTG+AGG - chr8_1:268279-268298 Msa1170890:intron 30.0%
GATTTCTATATTGTTGCTGA+GGG - chr8_1:268280-268299 Msa1170890:intron 30.0%
ATCAAAATAAGGACTGAAAG+TGG - chr8_1:268621-268640 Msa1170890:intron 30.0%
TTTGGTTGTTTGATGTATGT+AGG - chr8_1:268919-268938 Msa1170890:intron 30.0%
TTTGGATTATCCTAACACAA+AGG + chr8_1:269063-269082 None:intergenic 30.0%
TCAAAACAATGTGTGAATGA+AGG + chr8_1:265297-265316 None:intergenic 30.0%
! CTTAGCAATTTTTCTTCTCT+TGG - chr8_1:265364-265383 Msa1170890:three_prime_UTR 30.0%
TAAATGAGTTAAGACAAGTC+AGG - chr8_1:266058-266077 Msa1170890:intron 30.0%
AAATGAGTTAAGACAAGTCA+GGG - chr8_1:266059-266078 Msa1170890:intron 30.0%
! CATTTTGAATCTTTAGGCAT+GGG - chr8_1:266371-266390 Msa1170890:CDS 30.0%
! ATTTTGAATCTTTAGGCATG+GGG - chr8_1:266372-266391 Msa1170890:CDS 30.0%
! TTTACCATTAATGGACAAGA+AGG - chr8_1:266481-266500 Msa1170890:CDS 30.0%
TGATCATTACCTAGAAGAAT+GGG + chr8_1:266622-266641 None:intergenic 30.0%
ATGATCATTACCTAGAAGAA+TGG + chr8_1:266623-266642 None:intergenic 30.0%
GACAAAGATTATGTTCATGA+TGG - chr8_1:266892-266911 Msa1170890:CDS 30.0%
!!! TTTTTTAATTAGGGGAATGG+TGG - chr8_1:266950-266969 Msa1170890:CDS 30.0%
!! TTTTTAATTAGGGGAATGGT+GGG - chr8_1:266951-266970 Msa1170890:CDS 30.0%
GTGTATGCATCAGATATATT+TGG + chr8_1:267027-267046 None:intergenic 30.0%
TCTGATGCATACACTATTAA+TGG - chr8_1:267033-267052 Msa1170890:CDS 30.0%
! ACAATTGTTCCAATTGATTC+AGG - chr8_1:267473-267492 Msa1170890:intron 30.0%
! TTTGTTTCTCCTGAATCAAT+TGG + chr8_1:267485-267504 None:intergenic 30.0%
TTTGCAATTGTGAAGAAAAG+AGG + chr8_1:267542-267561 None:intergenic 30.0%
AACCATAAACTAACAGTAGT+AGG - chr8_1:267560-267579 Msa1170890:intron 30.0%
! GAAGATCTTTTCTTTACCAT+TGG - chr8_1:267914-267933 Msa1170890:intron 30.0%
! CTTTTCTTTACCATTGGATT+AGG - chr8_1:267920-267939 Msa1170890:intron 30.0%
! TAAGTTGAGATTTGGATCAA+GGG - chr8_1:268189-268208 Msa1170890:CDS 30.0%
CATATCCATGAAGATGAATA+GGG + chr8_1:268261-268280 None:intergenic 30.0%
TCATATCCATGAAGATGAAT+AGG + chr8_1:268262-268281 None:intergenic 30.0%
TGATTTCTATATTGTTGCTG+AGG - chr8_1:268279-268298 Msa1170890:intron 30.0%
GATTTCTATATTGTTGCTGA+GGG - chr8_1:268280-268299 Msa1170890:intron 30.0%
ATCAAAATAAGGACTGAAAG+TGG - chr8_1:268621-268640 Msa1170890:intron 30.0%
TTTGGTTGTTTGATGTATGT+AGG - chr8_1:268919-268938 Msa1170890:intron 30.0%
TTTGGATTATCCTAACACAA+AGG + chr8_1:269063-269082 None:intergenic 30.0%
CAATGTGTGAATGAAGGTTA+AGG + chr8_1:265291-265310 None:intergenic 35.0%
TTAATTTCCAAAGTTGGACC+AGG + chr8_1:265599-265618 None:intergenic 35.0%
GTTACAATGTCACCATTCAT+TGG - chr8_1:265660-265679 Msa1170890:CDS 35.0%
!! AAAAGTGTTTGCTTGCTTGT+GGG + chr8_1:265798-265817 None:intergenic 35.0%
!! AAAAAGTGTTTGCTTGCTTG+TGG + chr8_1:265799-265818 None:intergenic 35.0%
TCTTAGTACAAGTGTGAAGA+AGG + chr8_1:265826-265845 None:intergenic 35.0%
AAAAGGAATGTCACTCTACA+TGG + chr8_1:266128-266147 None:intergenic 35.0%
! GCATTTTGAATCTTTAGGCA+TGG - chr8_1:266370-266389 Msa1170890:CDS 35.0%
TTAGACAAATCAGAACAGGA+TGG - chr8_1:266395-266414 Msa1170890:CDS 35.0%
TAGACAAATCAGAACAGGAT+GGG - chr8_1:266396-266415 Msa1170890:CDS 35.0%
TGTACCTTCTTGTCCATTAA+TGG + chr8_1:266488-266507 None:intergenic 35.0%
! GATTATGTTCATGATGGAGA+TGG - chr8_1:266898-266917 Msa1170890:CDS 35.0%
! TCATGATGGAGATGGTTTAA+CGG - chr8_1:266906-266925 Msa1170890:CDS 35.0%
TACACTATTAATGGTCAACC+TGG - chr8_1:267042-267061 Msa1170890:CDS 35.0%
TTGCTTATAATAGTGATCGG+AGG - chr8_1:267340-267359 Msa1170890:intron 35.0%
! CACCTACTACTGTTAGTTTA+TGG + chr8_1:267565-267584 None:intergenic 35.0%
! ATGAGAACATTGGTTGTGAA+TGG + chr8_1:267608-267627 None:intergenic 35.0%
ACAACCAATGTTCTCATGTT+AGG - chr8_1:267611-267630 Msa1170890:CDS 35.0%
TTTGTATTCAAGAATGGCAG+TGG + chr8_1:267750-267769 None:intergenic 35.0%
TCATTGTAAGCAGGTAATGA+AGG + chr8_1:267821-267840 None:intergenic 35.0%
ATTGTTGAGTCCTAATCCAA+TGG + chr8_1:267933-267952 None:intergenic 35.0%
TGCAGGATTGAAAAATTGCT+AGG + chr8_1:268043-268062 None:intergenic 35.0%
!! TAGCAATTTTTCAATCCTGC+AGG - chr8_1:268042-268061 Msa1170890:CDS 35.0%
!! AGTACAAGGTGTTTTTACGA+CGG - chr8_1:268078-268097 Msa1170890:CDS 35.0%
GTAACTTTAGTCCCTTGAAT+CGG + chr8_1:268169-268188 None:intergenic 35.0%
! CTAAGTTGAGATTTGGATCA+AGG - chr8_1:268188-268207 Msa1170890:CDS 35.0%
AATCACCCTATTCATCTTCA+TGG - chr8_1:268253-268272 Msa1170890:intron 35.0%
TATATTGTTGCTGAGGGATT+TGG - chr8_1:268286-268305 Msa1170890:intron 35.0%
GAAATTGAGCTAATGTTACC+TGG + chr8_1:268427-268446 None:intergenic 35.0%
GAGACTAAGTACATGACTAA+AGG + chr8_1:268595-268614 None:intergenic 35.0%
GCAGTCAAATGAAATTGATG+TGG + chr8_1:268796-268815 None:intergenic 35.0%
GTTTGATGTATGTAGGTGTT+TGG - chr8_1:268926-268945 Msa1170890:intron 35.0%
TTGGATTATGCATTGTCACT+TGG - chr8_1:268945-268964 Msa1170890:intron 35.0%
ATTGTTTGTTTCCCTGCATT+GGG - chr8_1:269120-269139 Msa1170890:intron 35.0%
GAAAAAAAATCCCCAATGCA+GGG + chr8_1:269134-269153 None:intergenic 35.0%
AGAAAAAAAATCCCCAATGC+AGG + chr8_1:269135-269154 None:intergenic 35.0%
CAATGTGTGAATGAAGGTTA+AGG + chr8_1:265291-265310 None:intergenic 35.0%
TTAATTTCCAAAGTTGGACC+AGG + chr8_1:265599-265618 None:intergenic 35.0%
GTTACAATGTCACCATTCAT+TGG - chr8_1:265660-265679 Msa1170890:CDS 35.0%
!! AAAAGTGTTTGCTTGCTTGT+GGG + chr8_1:265798-265817 None:intergenic 35.0%
!! AAAAAGTGTTTGCTTGCTTG+TGG + chr8_1:265799-265818 None:intergenic 35.0%
TCTTAGTACAAGTGTGAAGA+AGG + chr8_1:265826-265845 None:intergenic 35.0%
AAAAGGAATGTCACTCTACA+TGG + chr8_1:266128-266147 None:intergenic 35.0%
! GCATTTTGAATCTTTAGGCA+TGG - chr8_1:266370-266389 Msa1170890:CDS 35.0%
TTAGACAAATCAGAACAGGA+TGG - chr8_1:266395-266414 Msa1170890:CDS 35.0%
TAGACAAATCAGAACAGGAT+GGG - chr8_1:266396-266415 Msa1170890:CDS 35.0%
TGTACCTTCTTGTCCATTAA+TGG + chr8_1:266488-266507 None:intergenic 35.0%
! GATTATGTTCATGATGGAGA+TGG - chr8_1:266898-266917 Msa1170890:CDS 35.0%
! TCATGATGGAGATGGTTTAA+CGG - chr8_1:266906-266925 Msa1170890:CDS 35.0%
TACACTATTAATGGTCAACC+TGG - chr8_1:267042-267061 Msa1170890:CDS 35.0%
TTGCTTATAATAGTGATCGG+AGG - chr8_1:267340-267359 Msa1170890:intron 35.0%
! CACCTACTACTGTTAGTTTA+TGG + chr8_1:267565-267584 None:intergenic 35.0%
! ATGAGAACATTGGTTGTGAA+TGG + chr8_1:267608-267627 None:intergenic 35.0%
ACAACCAATGTTCTCATGTT+AGG - chr8_1:267611-267630 Msa1170890:CDS 35.0%
TTTGTATTCAAGAATGGCAG+TGG + chr8_1:267750-267769 None:intergenic 35.0%
TCATTGTAAGCAGGTAATGA+AGG + chr8_1:267821-267840 None:intergenic 35.0%
ATTGTTGAGTCCTAATCCAA+TGG + chr8_1:267933-267952 None:intergenic 35.0%
TGCAGGATTGAAAAATTGCT+AGG + chr8_1:268043-268062 None:intergenic 35.0%
!! TAGCAATTTTTCAATCCTGC+AGG - chr8_1:268042-268061 Msa1170890:CDS 35.0%
!! AGTACAAGGTGTTTTTACGA+CGG - chr8_1:268078-268097 Msa1170890:CDS 35.0%
GTAACTTTAGTCCCTTGAAT+CGG + chr8_1:268169-268188 None:intergenic 35.0%
! CTAAGTTGAGATTTGGATCA+AGG - chr8_1:268188-268207 Msa1170890:CDS 35.0%
AATCACCCTATTCATCTTCA+TGG - chr8_1:268253-268272 Msa1170890:intron 35.0%
TATATTGTTGCTGAGGGATT+TGG - chr8_1:268286-268305 Msa1170890:intron 35.0%
GAAATTGAGCTAATGTTACC+TGG + chr8_1:268427-268446 None:intergenic 35.0%
GAGACTAAGTACATGACTAA+AGG + chr8_1:268595-268614 None:intergenic 35.0%
GCAGTCAAATGAAATTGATG+TGG + chr8_1:268796-268815 None:intergenic 35.0%
GTTTGATGTATGTAGGTGTT+TGG - chr8_1:268926-268945 Msa1170890:intron 35.0%
TTGGATTATGCATTGTCACT+TGG - chr8_1:268945-268964 Msa1170890:intron 35.0%
ATTGTTTGTTTCCCTGCATT+GGG - chr8_1:269120-269139 Msa1170890:intron 35.0%
GAAAAAAAATCCCCAATGCA+GGG + chr8_1:269134-269153 None:intergenic 35.0%
AGAAAAAAAATCCCCAATGC+AGG + chr8_1:269135-269154 None:intergenic 35.0%
AAACTCGTGCTCATGAACTT+TGG + chr8_1:265405-265424 None:intergenic 40.0%
CAAATGAGCATCACTGTGAA+TGG - chr8_1:265566-265585 Msa1170890:exon 40.0%
ACTGTGAATGGACAATTTCC+TGG - chr8_1:265578-265597 Msa1170890:exon 40.0%
ACAATTTCCTGGTCCAACTT+TGG - chr8_1:265589-265608 Msa1170890:CDS 40.0%
GGACATTGAGTCACAAATTC+TGG + chr8_1:266430-266449 None:intergenic 40.0%
TAACTTTCTCCAGGACGAAT+AGG + chr8_1:266451-266470 None:intergenic 40.0%
CTATAGGTGTAACTTTCTCC+AGG + chr8_1:266460-266479 None:intergenic 40.0%
! ATGGACAAGAAGGTACACTT+TGG - chr8_1:266491-266510 Msa1170890:CDS 40.0%
GATTAGAGCTCCATAAACTG+TGG + chr8_1:266545-266564 None:intergenic 40.0%
! AGCTCTAATCATTCACCCTA+AGG - chr8_1:266555-266574 Msa1170890:CDS 40.0%
CTAATCATTCACCCTAAGGA+AGG - chr8_1:266559-266578 Msa1170890:CDS 40.0%
GATAAGCATCTCCTTCCTTA+GGG + chr8_1:266573-266592 None:intergenic 40.0%
CTTGTCTCACAACATCCATA+GGG + chr8_1:266984-267003 None:intergenic 40.0%
CTTTACAAGTGCTCTACCAA+AGG - chr8_1:267069-267088 Msa1170890:CDS 40.0%
CATATGATCATTGGCAATGC+AGG - chr8_1:267446-267465 Msa1170890:intron 40.0%
!! CAGCATTGATTACTCTTAGG+AGG + chr8_1:267508-267527 None:intergenic 40.0%
!! GTGCAGCATTGATTACTCTT+AGG + chr8_1:267511-267530 None:intergenic 40.0%
GGTTGTGAATGGTTTGACAT+AGG + chr8_1:267597-267616 None:intergenic 40.0%
AGGTCCTAACATGAGAACAT+TGG + chr8_1:267618-267637 None:intergenic 40.0%
AATGTTCTCATGTTAGGACC+TGG - chr8_1:267617-267636 Msa1170890:CDS 40.0%
GGATTAGAACATCAGTGGTT+TGG + chr8_1:267643-267662 None:intergenic 40.0%
ACCACTGATGTTCTAATCCA+AGG - chr8_1:267644-267663 Msa1170890:CDS 40.0%
! ACCTTGGATTAGAACATCAG+TGG + chr8_1:267648-267667 None:intergenic 40.0%
!! TGTAGTATCTTGATGGTGGT+TGG + chr8_1:267673-267692 None:intergenic 40.0%
! GTGTTTGTGTCATTGTAAGC+AGG + chr8_1:267830-267849 None:intergenic 40.0%
AATCAATGTCAAGGACCGAA+CGG - chr8_1:267974-267993 Msa1170890:intron 40.0%
GCTCATAAACTTGGAGTACA+AGG - chr8_1:268064-268083 Msa1170890:CDS 40.0%
ACCGGTGTAATCAAATTGCA+CGG + chr8_1:268122-268141 None:intergenic 40.0%
ATTACACCGGTAATGTGAGT+CGG - chr8_1:268131-268150 Msa1170890:CDS 40.0%
AGATGAATAGGGTGATTCTC+AGG + chr8_1:268250-268269 None:intergenic 40.0%
ACTGTTGCTGTACCTGTTAA+TGG - chr8_1:268370-268389 Msa1170890:intron 40.0%
TTGCTGTACCTGTTAATGGT+TGG - chr8_1:268374-268393 Msa1170890:intron 40.0%
TGCTGTACCTGTTAATGGTT+GGG - chr8_1:268375-268394 Msa1170890:intron 40.0%
ATAACTGCCCAACCATTAAC+AGG + chr8_1:268385-268404 None:intergenic 40.0%
!! AGATTTGTTGCTGACAATCC+AGG - chr8_1:268406-268425 Msa1170890:intron 40.0%
! TGTTTCTGTGACCATAACTG+AGG - chr8_1:268770-268789 Msa1170890:intron 40.0%
AATTGATGTGGCCTCAGTTA+TGG + chr8_1:268784-268803 None:intergenic 40.0%
CAGGACCAAGTATCTATATG+CGG - chr8_1:268825-268844 Msa1170890:intron 40.0%
GCGGTTGCGATATAAAACTT+TGG - chr8_1:268844-268863 Msa1170890:intron 40.0%
! TGTCACTTGGATGTTCACAT+TGG - chr8_1:268958-268977 Msa1170890:intron 40.0%
ACTTGGATGTTCACATTGGA+TGG - chr8_1:268962-268981 Msa1170890:intron 40.0%
CTTGGATGTTCACATTGGAT+GGG - chr8_1:268963-268982 Msa1170890:intron 40.0%
TTGGATGTTCACATTGGATG+GGG - chr8_1:268964-268983 Msa1170890:intron 40.0%
!!! ACTGTGTTTTTGGTAGAGGA+TGG - chr8_1:268994-269013 Msa1170890:CDS 40.0%
!! TTTTTGGTAGAGGATGGAGA+AGG - chr8_1:269000-269019 Msa1170890:CDS 40.0%
! TTTTGGTAGAGGATGGAGAA+GGG - chr8_1:269001-269020 Msa1170890:CDS 40.0%
GATTATCCTAACACAAAGGC+AGG + chr8_1:269059-269078 None:intergenic 40.0%
CATTGTTTGTTTCCCTGCAT+TGG - chr8_1:269119-269138 Msa1170890:intron 40.0%
TTGTTTGTTTCCCTGCATTG+GGG - chr8_1:269121-269140 Msa1170890:intron 40.0%
GATAGTGTCACAAACCCTAT+TGG - chr8_1:269244-269263 Msa1170890:CDS 40.0%
AAACTCGTGCTCATGAACTT+TGG + chr8_1:265405-265424 None:intergenic 40.0%
CAAATGAGCATCACTGTGAA+TGG - chr8_1:265566-265585 Msa1170890:exon 40.0%
ACTGTGAATGGACAATTTCC+TGG - chr8_1:265578-265597 Msa1170890:exon 40.0%
ACAATTTCCTGGTCCAACTT+TGG - chr8_1:265589-265608 Msa1170890:CDS 40.0%
GGACATTGAGTCACAAATTC+TGG + chr8_1:266430-266449 None:intergenic 40.0%
TAACTTTCTCCAGGACGAAT+AGG + chr8_1:266451-266470 None:intergenic 40.0%
CTATAGGTGTAACTTTCTCC+AGG + chr8_1:266460-266479 None:intergenic 40.0%
! ATGGACAAGAAGGTACACTT+TGG - chr8_1:266491-266510 Msa1170890:CDS 40.0%
GATTAGAGCTCCATAAACTG+TGG + chr8_1:266545-266564 None:intergenic 40.0%
! AGCTCTAATCATTCACCCTA+AGG - chr8_1:266555-266574 Msa1170890:CDS 40.0%
CTAATCATTCACCCTAAGGA+AGG - chr8_1:266559-266578 Msa1170890:CDS 40.0%
GATAAGCATCTCCTTCCTTA+GGG + chr8_1:266573-266592 None:intergenic 40.0%
CTTGTCTCACAACATCCATA+GGG + chr8_1:266984-267003 None:intergenic 40.0%
CTTTACAAGTGCTCTACCAA+AGG - chr8_1:267069-267088 Msa1170890:CDS 40.0%
CATATGATCATTGGCAATGC+AGG - chr8_1:267446-267465 Msa1170890:intron 40.0%
!! CAGCATTGATTACTCTTAGG+AGG + chr8_1:267508-267527 None:intergenic 40.0%
!! GTGCAGCATTGATTACTCTT+AGG + chr8_1:267511-267530 None:intergenic 40.0%
GGTTGTGAATGGTTTGACAT+AGG + chr8_1:267597-267616 None:intergenic 40.0%
AGGTCCTAACATGAGAACAT+TGG + chr8_1:267618-267637 None:intergenic 40.0%
AATGTTCTCATGTTAGGACC+TGG - chr8_1:267617-267636 Msa1170890:CDS 40.0%
GGATTAGAACATCAGTGGTT+TGG + chr8_1:267643-267662 None:intergenic 40.0%
ACCACTGATGTTCTAATCCA+AGG - chr8_1:267644-267663 Msa1170890:CDS 40.0%
! ACCTTGGATTAGAACATCAG+TGG + chr8_1:267648-267667 None:intergenic 40.0%
!! TGTAGTATCTTGATGGTGGT+TGG + chr8_1:267673-267692 None:intergenic 40.0%
! GTGTTTGTGTCATTGTAAGC+AGG + chr8_1:267830-267849 None:intergenic 40.0%
AATCAATGTCAAGGACCGAA+CGG - chr8_1:267974-267993 Msa1170890:intron 40.0%
GCTCATAAACTTGGAGTACA+AGG - chr8_1:268064-268083 Msa1170890:CDS 40.0%
ACCGGTGTAATCAAATTGCA+CGG + chr8_1:268122-268141 None:intergenic 40.0%
ATTACACCGGTAATGTGAGT+CGG - chr8_1:268131-268150 Msa1170890:CDS 40.0%
AGATGAATAGGGTGATTCTC+AGG + chr8_1:268250-268269 None:intergenic 40.0%
ACTGTTGCTGTACCTGTTAA+TGG - chr8_1:268370-268389 Msa1170890:intron 40.0%
TTGCTGTACCTGTTAATGGT+TGG - chr8_1:268374-268393 Msa1170890:intron 40.0%
TGCTGTACCTGTTAATGGTT+GGG - chr8_1:268375-268394 Msa1170890:intron 40.0%
ATAACTGCCCAACCATTAAC+AGG + chr8_1:268385-268404 None:intergenic 40.0%
!! AGATTTGTTGCTGACAATCC+AGG - chr8_1:268406-268425 Msa1170890:intron 40.0%
! TGTTTCTGTGACCATAACTG+AGG - chr8_1:268770-268789 Msa1170890:intron 40.0%
AATTGATGTGGCCTCAGTTA+TGG + chr8_1:268784-268803 None:intergenic 40.0%
CAGGACCAAGTATCTATATG+CGG - chr8_1:268825-268844 Msa1170890:intron 40.0%
GCGGTTGCGATATAAAACTT+TGG - chr8_1:268844-268863 Msa1170890:intron 40.0%
! TGTCACTTGGATGTTCACAT+TGG - chr8_1:268958-268977 Msa1170890:intron 40.0%
ACTTGGATGTTCACATTGGA+TGG - chr8_1:268962-268981 Msa1170890:intron 40.0%
CTTGGATGTTCACATTGGAT+GGG - chr8_1:268963-268982 Msa1170890:intron 40.0%
TTGGATGTTCACATTGGATG+GGG - chr8_1:268964-268983 Msa1170890:intron 40.0%
!!! ACTGTGTTTTTGGTAGAGGA+TGG - chr8_1:268994-269013 Msa1170890:CDS 40.0%
!! TTTTTGGTAGAGGATGGAGA+AGG - chr8_1:269000-269019 Msa1170890:CDS 40.0%
! TTTTGGTAGAGGATGGAGAA+GGG - chr8_1:269001-269020 Msa1170890:CDS 40.0%
GATTATCCTAACACAAAGGC+AGG + chr8_1:269059-269078 None:intergenic 40.0%
CATTGTTTGTTTCCCTGCAT+TGG - chr8_1:269119-269138 Msa1170890:intron 40.0%
TTGTTTGTTTCCCTGCATTG+GGG - chr8_1:269121-269140 Msa1170890:intron 40.0%
GATAGTGTCACAAACCCTAT+TGG - chr8_1:269244-269263 Msa1170890:CDS 40.0%
TACAAGCAACTCCAGTGAAG+AGG - chr8_1:265531-265550 Msa1170890:three_prime_UTR 45.0%
GGGGTTAGACAAATCAGAAC+AGG - chr8_1:266391-266410 Msa1170890:CDS 45.0%
ACTCAATGTCCTATTCGTCC+TGG - chr8_1:266439-266458 Msa1170890:CDS 45.0%
! GACAAGAAGGTACACTTTGG+TGG - chr8_1:266494-266513 Msa1170890:CDS 45.0%
TGGCTTAGAGCCACAGTTTA+TGG - chr8_1:266532-266551 Msa1170890:CDS 45.0%
GGATAAGCATCTCCTTCCTT+AGG + chr8_1:266574-266593 None:intergenic 45.0%
! TCACGCTTTGGCTTAGTGAA+AGG + chr8_1:266595-266614 None:intergenic 45.0%
AGAATGGGTGTTTCACGCTT+TGG + chr8_1:266607-266626 None:intergenic 45.0%
CGTGAAACACCCATTCTTCT+AGG - chr8_1:266610-266629 Msa1170890:CDS 45.0%
GCTTGTCTCACAACATCCAT+AGG + chr8_1:266985-267004 None:intergenic 45.0%
GAGCACTTGTAAAGATCACC+AGG + chr8_1:267063-267082 None:intergenic 45.0%
GCGATGTAGTATCTTGATGG+TGG + chr8_1:267677-267696 None:intergenic 45.0%
CCATCAAGATACTACATCGC+CGG - chr8_1:267677-267696 Msa1170890:intron 45.0%
CATCAAGATACTACATCGCC+GGG - chr8_1:267678-267697 Msa1170890:intron 45.0%
ATCATCACCTTGTCCTGCAA+AGG - chr8_1:267769-267788 Msa1170890:intron 45.0%
TCATCACCTTGTCCTGCAAA+GGG - chr8_1:267770-267789 Msa1170890:intron 45.0%
! GCAGGTAATGAAGGCATGAT+TGG + chr8_1:267812-267831 None:intergenic 45.0%
ATCCTGCAGGCTCATAAACT+TGG - chr8_1:268055-268074 Msa1170890:CDS 45.0%
!! AATTGCACGGGAGGTTTTGT+GGG + chr8_1:268109-268128 None:intergenic 45.0%
! AAATTGCACGGGAGGTTTTG+TGG + chr8_1:268110-268129 None:intergenic 45.0%
GTGTAATCAAATTGCACGGG+AGG + chr8_1:268118-268137 None:intergenic 45.0%
CCGGTGTAATCAAATTGCAC+GGG + chr8_1:268121-268140 None:intergenic 45.0%
CCCGTGCAATTTGATTACAC+CGG - chr8_1:268118-268137 Msa1170890:CDS 45.0%
! CAATGACCGACTCACATTAC+CGG + chr8_1:268140-268159 None:intergenic 45.0%
GTAATGTGAGTCGGTCATTG+TGG - chr8_1:268140-268159 Msa1170890:CDS 45.0%
! TCATTGTGGCAACCGATTCA+AGG - chr8_1:268154-268173 Msa1170890:CDS 45.0%
! CATTGTGGCAACCGATTCAA+GGG - chr8_1:268155-268174 Msa1170890:CDS 45.0%
GAGATTTGGATCAAGGGTTC+AGG - chr8_1:268195-268214 Msa1170890:CDS 45.0%
ACCTTGTTGATCCACCTATG+AGG - chr8_1:268344-268363 Msa1170890:intron 45.0%
TCCTCATAGGTGGATCAACA+AGG + chr8_1:268348-268367 None:intergenic 45.0%
ACAGCAACAGTGTTCCTCAT+AGG + chr8_1:268361-268380 None:intergenic 45.0%
ATTTGACTGCGATTCTCTGC+AGG - chr8_1:268806-268825 Msa1170890:intron 45.0%
CGCAACCGCATATAGATACT+TGG + chr8_1:268833-268852 None:intergenic 45.0%
TGTTCACATTGGATGGGGTT+TGG - chr8_1:268969-268988 Msa1170890:intron 45.0%
! GGGTTTGGCTACTGTGTTTT+TGG - chr8_1:268984-269003 Msa1170890:CDS 45.0%
!!! GGCTACTGTGTTTTTGGTAG+AGG - chr8_1:268990-269009 Msa1170890:CDS 45.0%
GGGTTTGTGACACTATCAGA+TGG + chr8_1:269241-269260 None:intergenic 45.0%
TACAAGCAACTCCAGTGAAG+AGG - chr8_1:265531-265550 Msa1170890:three_prime_UTR 45.0%
GGGGTTAGACAAATCAGAAC+AGG - chr8_1:266391-266410 Msa1170890:CDS 45.0%
ACTCAATGTCCTATTCGTCC+TGG - chr8_1:266439-266458 Msa1170890:CDS 45.0%
! GACAAGAAGGTACACTTTGG+TGG - chr8_1:266494-266513 Msa1170890:CDS 45.0%
TGGCTTAGAGCCACAGTTTA+TGG - chr8_1:266532-266551 Msa1170890:CDS 45.0%
GGATAAGCATCTCCTTCCTT+AGG + chr8_1:266574-266593 None:intergenic 45.0%
! TCACGCTTTGGCTTAGTGAA+AGG + chr8_1:266595-266614 None:intergenic 45.0%
AGAATGGGTGTTTCACGCTT+TGG + chr8_1:266607-266626 None:intergenic 45.0%
CGTGAAACACCCATTCTTCT+AGG - chr8_1:266610-266629 Msa1170890:CDS 45.0%
GCTTGTCTCACAACATCCAT+AGG + chr8_1:266985-267004 None:intergenic 45.0%
GAGCACTTGTAAAGATCACC+AGG + chr8_1:267063-267082 None:intergenic 45.0%
GCGATGTAGTATCTTGATGG+TGG + chr8_1:267677-267696 None:intergenic 45.0%
CCATCAAGATACTACATCGC+CGG - chr8_1:267677-267696 Msa1170890:intron 45.0%
CATCAAGATACTACATCGCC+GGG - chr8_1:267678-267697 Msa1170890:intron 45.0%
ATCATCACCTTGTCCTGCAA+AGG - chr8_1:267769-267788 Msa1170890:intron 45.0%
TCATCACCTTGTCCTGCAAA+GGG - chr8_1:267770-267789 Msa1170890:intron 45.0%
! GCAGGTAATGAAGGCATGAT+TGG + chr8_1:267812-267831 None:intergenic 45.0%
ATCCTGCAGGCTCATAAACT+TGG - chr8_1:268055-268074 Msa1170890:CDS 45.0%
!! AATTGCACGGGAGGTTTTGT+GGG + chr8_1:268109-268128 None:intergenic 45.0%
! AAATTGCACGGGAGGTTTTG+TGG + chr8_1:268110-268129 None:intergenic 45.0%
GTGTAATCAAATTGCACGGG+AGG + chr8_1:268118-268137 None:intergenic 45.0%
CCGGTGTAATCAAATTGCAC+GGG + chr8_1:268121-268140 None:intergenic 45.0%
CCCGTGCAATTTGATTACAC+CGG - chr8_1:268118-268137 Msa1170890:CDS 45.0%
! CAATGACCGACTCACATTAC+CGG + chr8_1:268140-268159 None:intergenic 45.0%
GTAATGTGAGTCGGTCATTG+TGG - chr8_1:268140-268159 Msa1170890:CDS 45.0%
! TCATTGTGGCAACCGATTCA+AGG - chr8_1:268154-268173 Msa1170890:CDS 45.0%
! CATTGTGGCAACCGATTCAA+GGG - chr8_1:268155-268174 Msa1170890:CDS 45.0%
GAGATTTGGATCAAGGGTTC+AGG - chr8_1:268195-268214 Msa1170890:CDS 45.0%
ACCTTGTTGATCCACCTATG+AGG - chr8_1:268344-268363 Msa1170890:intron 45.0%
TCCTCATAGGTGGATCAACA+AGG + chr8_1:268348-268367 None:intergenic 45.0%
ACAGCAACAGTGTTCCTCAT+AGG + chr8_1:268361-268380 None:intergenic 45.0%
ATTTGACTGCGATTCTCTGC+AGG - chr8_1:268806-268825 Msa1170890:intron 45.0%
CGCAACCGCATATAGATACT+TGG + chr8_1:268833-268852 None:intergenic 45.0%
TGTTCACATTGGATGGGGTT+TGG - chr8_1:268969-268988 Msa1170890:intron 45.0%
! GGGTTTGGCTACTGTGTTTT+TGG - chr8_1:268984-269003 Msa1170890:CDS 45.0%
!!! GGCTACTGTGTTTTTGGTAG+AGG - chr8_1:268990-269009 Msa1170890:CDS 45.0%
GGGTTTGTGACACTATCAGA+TGG + chr8_1:269241-269260 None:intergenic 45.0%
!! ATTGTATAAAAAATATAATT+AGG - chr8_1:268455-268474 Msa1170890:intron 5.0%
!! TTGTATAAAAAATATAATTA+GGG - chr8_1:268456-268475 Msa1170890:intron 5.0%
!! TGTAAAAATTAATAAAAATA+GGG + chr8_1:268562-268581 None:intergenic 5.0%
!! TTGTAAAAATTAATAAAAAT+AGG + chr8_1:268563-268582 None:intergenic 5.0%
!!! TTTTATTAATTTTTACAAAA+TGG - chr8_1:268565-268584 Msa1170890:intron 5.0%
!!! AAAAAATTGTAAATTTTATA+GGG - chr8_1:268669-268688 Msa1170890:intron 5.0%
!! ATTGTATAAAAAATATAATT+AGG - chr8_1:268455-268474 Msa1170890:intron 5.0%
!! TTGTATAAAAAATATAATTA+GGG - chr8_1:268456-268475 Msa1170890:intron 5.0%
!! TGTAAAAATTAATAAAAATA+GGG + chr8_1:268562-268581 None:intergenic 5.0%
!! TTGTAAAAATTAATAAAAAT+AGG + chr8_1:268563-268582 None:intergenic 5.0%
!!! TTTTATTAATTTTTACAAAA+TGG - chr8_1:268565-268584 Msa1170890:intron 5.0%
!!! AAAAAATTGTAAATTTTATA+GGG - chr8_1:268669-268688 Msa1170890:intron 5.0%
!! ATCAGAACAGGATGGGCTGA+TGG - chr8_1:266403-266422 Msa1170890:CDS 50.0%
GGTGGCATGCTCATAGTTCA+TGG - chr8_1:266512-266531 Msa1170890:CDS 50.0%
! ATGGTGGGATGCAAACCCTA+TGG - chr8_1:266966-266985 Msa1170890:CDS 50.0%
GTGAGACAAGCCACACAAAC+AGG - chr8_1:266994-267013 Msa1170890:CDS 50.0%
! AGAACATCAGTGGTTTGGCC+AGG + chr8_1:267638-267657 None:intergenic 50.0%
!! TTGATGGTGGTTGGTCACCT+TGG + chr8_1:267664-267683 None:intergenic 50.0%
CCGGCGATGTAGTATCTTGA+TGG + chr8_1:267680-267699 None:intergenic 50.0%
! ACGCAGCATTTTGAGCCGAT+TGG + chr8_1:267712-267731 None:intergenic 50.0%
CATCACCTTGTCCTGCAAAG+GGG - chr8_1:267771-267790 Msa1170890:intron 50.0%
ATCACCTTGTCCTGCAAAGG+GGG - chr8_1:267772-267791 Msa1170890:intron 50.0%
ATATTTGCACCCCCCTTTGC+AGG + chr8_1:267785-267804 None:intergenic 50.0%
GAAGTGAACCGTGTACCGTT+CGG + chr8_1:267992-268011 None:intergenic 50.0%
CTCCAAGTTTATGAGCCTGC+AGG + chr8_1:268060-268079 None:intergenic 50.0%
GCAACAGTGTTCCTCATAGG+TGG + chr8_1:268358-268377 None:intergenic 50.0%
AGAGGATGGAGAAGGGCTAT+TGG - chr8_1:269008-269027 Msa1170890:CDS 50.0%
TAACACAAAGGCAGGTCCTC+AGG + chr8_1:269051-269070 None:intergenic 50.0%
TGAGGACCTGCCTTTGTGTT+AGG - chr8_1:269050-269069 Msa1170890:CDS 50.0%
!! ATCAGAACAGGATGGGCTGA+TGG - chr8_1:266403-266422 Msa1170890:CDS 50.0%
GGTGGCATGCTCATAGTTCA+TGG - chr8_1:266512-266531 Msa1170890:CDS 50.0%
! ATGGTGGGATGCAAACCCTA+TGG - chr8_1:266966-266985 Msa1170890:CDS 50.0%
GTGAGACAAGCCACACAAAC+AGG - chr8_1:266994-267013 Msa1170890:CDS 50.0%
! AGAACATCAGTGGTTTGGCC+AGG + chr8_1:267638-267657 None:intergenic 50.0%
!! TTGATGGTGGTTGGTCACCT+TGG + chr8_1:267664-267683 None:intergenic 50.0%
CCGGCGATGTAGTATCTTGA+TGG + chr8_1:267680-267699 None:intergenic 50.0%
! ACGCAGCATTTTGAGCCGAT+TGG + chr8_1:267712-267731 None:intergenic 50.0%
CATCACCTTGTCCTGCAAAG+GGG - chr8_1:267771-267790 Msa1170890:intron 50.0%
ATCACCTTGTCCTGCAAAGG+GGG - chr8_1:267772-267791 Msa1170890:intron 50.0%
ATATTTGCACCCCCCTTTGC+AGG + chr8_1:267785-267804 None:intergenic 50.0%
GAAGTGAACCGTGTACCGTT+CGG + chr8_1:267992-268011 None:intergenic 50.0%
CTCCAAGTTTATGAGCCTGC+AGG + chr8_1:268060-268079 None:intergenic 50.0%
GCAACAGTGTTCCTCATAGG+TGG + chr8_1:268358-268377 None:intergenic 50.0%
AGAGGATGGAGAAGGGCTAT+TGG - chr8_1:269008-269027 Msa1170890:CDS 50.0%
TAACACAAAGGCAGGTCCTC+AGG + chr8_1:269051-269070 None:intergenic 50.0%
TGAGGACCTGCCTTTGTGTT+AGG - chr8_1:269050-269069 Msa1170890:CDS 50.0%
GTGTTGCACAGCCTCTTCAC+TGG + chr8_1:265545-265564 None:intergenic 55.0%
TGGAGCTGCTCCTGTTTGTG+TGG + chr8_1:267007-267026 None:intergenic 55.0%
TCACCTTGTCCTGCAAAGGG+GGG - chr8_1:267773-267792 Msa1170890:intron 55.0%
GTCAAGGACCGAACGGTACA+CGG - chr8_1:267981-268000 Msa1170890:intron 55.0%
GTCCATAGAAGCTCCTCCTG+AGG - chr8_1:269032-269051 Msa1170890:CDS 55.0%
GTCCTCAGGAGGAGCTTCTA+TGG + chr8_1:269037-269056 None:intergenic 55.0%
GTGTTGCACAGCCTCTTCAC+TGG + chr8_1:265545-265564 None:intergenic 55.0%
TGGAGCTGCTCCTGTTTGTG+TGG + chr8_1:267007-267026 None:intergenic 55.0%
TCACCTTGTCCTGCAAAGGG+GGG - chr8_1:267773-267792 Msa1170890:intron 55.0%
GTCAAGGACCGAACGGTACA+CGG - chr8_1:267981-268000 Msa1170890:intron 55.0%
GTCCATAGAAGCTCCTCCTG+AGG - chr8_1:269032-269051 Msa1170890:CDS 55.0%
GTCCTCAGGAGGAGCTTCTA+TGG + chr8_1:269037-269056 None:intergenic 55.0%
CACAAAGGCAGGTCCTCAGG+AGG + chr8_1:269048-269067 None:intergenic 60.0%
CACAAAGGCAGGTCCTCAGG+AGG + chr8_1:269048-269067 None:intergenic 60.0%
AGCCGATTGGTAAGCGCGCC+CGG + chr8_1:267699-267718 None:intergenic 65.0%
GCACCCCCCTTTGCAGGACA+AGG + chr8_1:267779-267798 None:intergenic 65.0%
AGCCGATTGGTAAGCGCGCC+CGG + chr8_1:267699-267718 None:intergenic 65.0%
GCACCCCCCTTTGCAGGACA+AGG + chr8_1:267779-267798 None:intergenic 65.0%
CGCCGGGCGCGCTTACCAAT+CGG - chr8_1:267694-267713 Msa1170890:intron 70.0%
CGCCGGGCGCGCTTACCAAT+CGG - chr8_1:267694-267713 Msa1170890:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 265274 269377 265274 ID=Msa1170890;Name=Msa1170890
chr8_1 mRNA 265274 269377 265274 ID=Msa1170890-mRNA-1;Parent=Msa1170890;Name=Msa1170890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67|1|1|1|1|1|6|306|567
chr8_1 exon 265274 265710 265274 ID=Msa1170890-mRNA-1:exon:56;Parent=Msa1170890-mRNA-1
chr8_1 exon 266224 267183 266224 ID=Msa1170890-mRNA-1:exon:55;Parent=Msa1170890-mRNA-1
chr8_1 exon 267561 267689 267561 ID=Msa1170890-mRNA-1:exon:54;Parent=Msa1170890-mRNA-1
chr8_1 exon 268020 268264 268020 ID=Msa1170890-mRNA-1:exon:53;Parent=Msa1170890-mRNA-1
chr8_1 exon 268970 269121 268970 ID=Msa1170890-mRNA-1:exon:52;Parent=Msa1170890-mRNA-1
chr8_1 exon 269224 269377 269224 ID=Msa1170890-mRNA-1:exon:51;Parent=Msa1170890-mRNA-1
chr8_1 five_prime_UTR 269311 269377 269311 ID=Msa1170890-mRNA-1:five_prime_utr;Parent=Msa1170890-mRNA-1
chr8_1 CDS 269224 269310 269224 ID=Msa1170890-mRNA-1:cds;Parent=Msa1170890-mRNA-1
chr8_1 CDS 268970 269121 268970 ID=Msa1170890-mRNA-1:cds;Parent=Msa1170890-mRNA-1
chr8_1 CDS 268020 268264 268020 ID=Msa1170890-mRNA-1:cds;Parent=Msa1170890-mRNA-1
chr8_1 CDS 267561 267689 267561 ID=Msa1170890-mRNA-1:cds;Parent=Msa1170890-mRNA-1
chr8_1 CDS 266224 267183 266224 ID=Msa1170890-mRNA-1:cds;Parent=Msa1170890-mRNA-1
chr8_1 CDS 265580 265710 265580 ID=Msa1170890-mRNA-1:cds;Parent=Msa1170890-mRNA-1
chr8_1 three_prime_UTR 265274 265579 265274 ID=Msa1170890-mRNA-1:three_prime_utr;Parent=Msa1170890-mRNA-1
Gene Sequence

>Msa1170890

ATGGAAGCTTTCAACACCATCTTCTTAGCAATTTTTCTTCTCTTGGCTTCTTTAGCTAATGCCAAAGTTCATGAGCACGAGTTTGTCGTACAAGCAACTCCAGTGAAGAGGCTGTGCAACACACAAATGAGCATCACTGTGAATGGACAATTTCCTGGTCCAACTTTGGAAATTAATAATGGAGATACTTTGGTTGTCAAAGTCATTAACAAAGCTCGTTACAATGTCACCATTCATTGGCATGGGGTTAGACAAATCAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAATGTCCTATTCGTCCTGGAGAAAGTTACACCTATAGATTTACCATTAATGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCATGGCTTAGAGCCACAGTTTATGGAGCTCTAATCATTCACCCTAAGGAAGGAGATGCTTATCCTTTCACTAAGCCAAAGCGTGAAACACCCATTCTTCTAGGGGAATGGTGGGATGCAAACCCTATGGATGTTGTGAGACAAGCCACACAAACAGGAGCAGCTCCAAATATATCTGATGCATACACTATTAATGGTCAACCTGGTGATCTTTACAAGTGCTCTACCAAAGGCACAACAATTGTTCCAATTGATTCAGGAGAAACAAACCTCCTAAGAGTAATCAATGCTGCACTAAATCAACCTCTTTTCTTCACAATTGCAAACCATAAACTAACAGTAGTAGGTGCTGATGCTTCCTATGTCAAACCATTCACAACCAATGTTCTCATGTTAGGACCTGGCCAAACCACTGATGTTCTAATCCAAGGTGACCAACCACCATCAAGATACTACATCGCCGGGCGCGCTTACCAATCGGCTCAAAATGCTGCGTTCGATAACACAACAACCACTGCCATTCTTGAATACAAATCATCACCTTGTCCTGCAAAGGGGGGTGCAAATATCAGACCAATCATGCCTTCATTACCTGCTTACAATGACACAAACACTGTTACATCATTTAGTAAAAGCTTTAGAAGTTTAAGGAATGTTGAAGTTCCTAATGAAATTGATGAAGATCTTTTCTTTACCATTGGATTAGGACTCAACAATTGTCCATCGAATTTTAATGCAAATCAATGTCAAGGACCGAACGGTACACGGTTCACTTCTAGTATGAACAATGTGTCTTTTGTACTTCCTAGCAATTTTTCAATCCTGCAGGCTCATAAACTTGGAGTACAAGGTGTTTTTACGACGGATTTTCCCACAAAACCTCCCGTGCAATTTGATTACACCGGTAATGTGAGTCGGTCATTGTGGCAACCGATTCAAGGGACTAAAGTTACTAAGTTGAGATTTGGATCAAGGGTTCAGGTTGTTTTGCAAGATACTAGTATTGTTACTCCTGAGAATCACCCTATTCATCTTCATGGATATGATTTCTATATTGTTGCTGAGGGATTTGGAAATTATGACCCTAAGAAAGATGCTTCAAAATTTAACCTTGTTGATCCACCTATGAGGAACACTGTTGCTGTACCTGTTAATGGTTGGGCAGTTATCAGATTTGTTGCTGACAATCCAGGTGTTTGGATTATGCATTGTCACTTGGATGTTCACATTGGATGGGGTTTGGCTACTGTGTTTTTGGTAGAGGATGGAGAAGGGCTATTGGAGTCCATAGAAGCTCCTCCTGAGGACCTGCCTTTGTGTTAG
Protein sequence

>Msa1170890

MEAFNTIFLAIFLLLASLANAKVHEHEFVVQATPVKRLCNTQMSITVNGQFPGPTLEINNGDTLVVKVINKARYNVTIHWHGVRQIRTGWADGPEFVTQCPIRPGESYTYRFTINGQEGTLWWHAHSSWLRATVYGALIIHPKEGDAYPFTKPKRETPILLGEWWDANPMDVVRQATQTGAAPNISDAYTINGQPGDLYKCSTKGTTIVPIDSGETNLLRVINAALNQPLFFTIANHKLTVVGADASYVKPFTTNVLMLGPGQTTDVLIQGDQPPSRYYIAGRAYQSAQNAAFDNTTTTAILEYKSSPCPAKGGANIRPIMPSLPAYNDTNTVTSFSKSFRSLRNVEVPNEIDEDLFFTIGLGLNNCPSNFNANQCQGPNGTRFTSSMNNVSFVLPSNFSILQAHKLGVQGVFTTDFPTKPPVQFDYTGNVSRSLWQPIQGTKVTKLRFGSRVQVVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNYDPKKDASKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGVWIMHCHLDVHIGWGLATVFLVEDGEGLLESIEAPPEDLPLC*