Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352380 | XP_024636352.2 | 93.005 | 386 | 27 | 0 | 1 | 386 | 110 | 495 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352380 | sp|Q39152|FACR1_ARATH | 49.871 | 387 | 187 | 4 | 1 | 386 | 110 | 490 | 6.71e-140 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352380 | G7JJM2 | 93.005 | 386 | 27 | 0 | 1 | 386 | 110 | 495 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1352380 | Msa1420060 | 0.804410 | 2.189397e-49 | -8.615850e-47 |
| Msa0672520 | Msa1352380 | 0.948735 | 5.225669e-107 | -8.615850e-47 |
| Msa0680750 | Msa1352380 | 0.953324 | 3.524574e-111 | -8.615850e-47 |
| Msa0298240 | Msa1352380 | 0.803560 | 3.288675e-49 | -8.615850e-47 |
| Msa0545840 | Msa1352380 | 0.936950 | 7.634305e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352380 | MtrunA17_Chr4g0026711 | 93.005 | 386 | 27 | 0 | 1 | 386 | 110 | 495 | 0.0 | 759 |
| Msa1352380 | MtrunA17_Chr4g0026771 | 72.093 | 387 | 106 | 2 | 1 | 386 | 107 | 492 | 0.0 | 563 |
| Msa1352380 | MtrunA17_Chr4g0026691 | 50.653 | 383 | 185 | 2 | 4 | 386 | 113 | 491 | 2.34e-138 | 403 |
| Msa1352380 | MtrunA17_Chr2g0321201 | 49.608 | 383 | 188 | 4 | 4 | 386 | 115 | 492 | 1.89e-136 | 399 |
| Msa1352380 | MtrunA17_Chr4g0026701 | 48.964 | 386 | 193 | 2 | 1 | 386 | 111 | 492 | 1.34e-135 | 396 |
| Msa1352380 | MtrunA17_Chr2g0321181 | 48.303 | 383 | 194 | 2 | 4 | 386 | 113 | 491 | 1.62e-132 | 389 |
| Msa1352380 | MtrunA17_Chr5g0419501 | 64.966 | 294 | 48 | 4 | 1 | 294 | 110 | 348 | 1.15e-121 | 355 |
| Msa1352380 | MtrunA17_Chr6g0465391 | 48.187 | 386 | 165 | 6 | 1 | 386 | 110 | 460 | 4.03e-120 | 356 |
| Msa1352380 | MtrunA17_Chr4g0026911 | 69.730 | 185 | 54 | 2 | 204 | 386 | 3 | 187 | 1.12e-90 | 271 |
| Msa1352380 | MtrunA17_Chr1g0176054 | 35.516 | 397 | 230 | 9 | 3 | 386 | 225 | 608 | 3.98e-81 | 260 |
| Msa1352380 | MtrunA17_Chr5g0431281 | 63.587 | 184 | 65 | 2 | 204 | 386 | 28 | 210 | 4.95e-76 | 234 |
| Msa1352380 | MtrunA17_Chr5g0431251 | 75.781 | 128 | 31 | 0 | 77 | 204 | 3 | 130 | 1.96e-68 | 212 |
| Msa1352380 | MtrunA17_Chr5g0419491 | 89.362 | 94 | 10 | 0 | 293 | 386 | 7 | 100 | 9.61e-56 | 178 |
| Msa1352380 | MtrunA17_Chr4g0026891 | 68.293 | 123 | 37 | 2 | 1 | 122 | 107 | 228 | 2.26e-51 | 173 |
| Msa1352380 | MtrunA17_Chr5g0431261 | 59.341 | 91 | 37 | 0 | 204 | 294 | 3 | 93 | 7.90e-33 | 118 |
| Msa1352380 | MtrunA17_Chr6g0465381 | 49.640 | 139 | 70 | 0 | 138 | 276 | 1 | 139 | 7.07e-32 | 118 |
| Msa1352380 | MtrunA17_Chr4g0026901 | 86.207 | 58 | 8 | 0 | 122 | 179 | 16 | 73 | 9.10e-32 | 115 |
| Msa1352380 | MtrunA17_Chr5g0431271 | 73.134 | 67 | 18 | 0 | 138 | 204 | 1 | 67 | 1.57e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352380 | AT5G22500.1 | 49.871 | 387 | 187 | 4 | 1 | 386 | 110 | 490 | 6.82e-141 | 410 |
| Msa1352380 | AT3G44540.1 | 50.904 | 387 | 185 | 4 | 1 | 386 | 110 | 492 | 1.03e-140 | 410 |
| Msa1352380 | AT3G44550.2 | 48.586 | 389 | 194 | 2 | 1 | 386 | 1 | 386 | 8.15e-133 | 386 |
| Msa1352380 | AT3G44550.1 | 48.586 | 389 | 194 | 2 | 1 | 386 | 110 | 495 | 1.43e-131 | 387 |
| Msa1352380 | AT4G33790.2 | 46.214 | 383 | 201 | 4 | 1 | 383 | 1 | 378 | 6.56e-129 | 375 |
| Msa1352380 | AT4G33790.1 | 46.214 | 383 | 201 | 4 | 1 | 383 | 114 | 491 | 1.07e-127 | 377 |
| Msa1352380 | AT3G44560.1 | 48.586 | 389 | 194 | 2 | 1 | 386 | 110 | 495 | 5.85e-125 | 370 |
| Msa1352380 | AT5G22420.4 | 46.113 | 373 | 194 | 6 | 1 | 373 | 1 | 366 | 1.94e-119 | 351 |
| Msa1352380 | AT5G22420.1 | 44.142 | 367 | 198 | 6 | 7 | 373 | 43 | 402 | 1.31e-110 | 330 |
| Msa1352380 | AT5G22420.3 | 45.070 | 355 | 188 | 6 | 19 | 373 | 3 | 350 | 3.29e-109 | 325 |
| Msa1352380 | AT5G22420.6 | 45.070 | 355 | 188 | 6 | 19 | 373 | 3 | 350 | 3.29e-109 | 325 |
| Msa1352380 | AT5G22500.2 | 50.680 | 294 | 139 | 3 | 1 | 294 | 110 | 397 | 2.29e-108 | 324 |
| Msa1352380 | AT3G44560.3 | 48.961 | 337 | 169 | 1 | 1 | 337 | 110 | 443 | 1.59e-106 | 321 |
| Msa1352380 | AT3G44560.2 | 50.169 | 295 | 144 | 1 | 1 | 295 | 110 | 401 | 1.77e-95 | 291 |
| Msa1352380 | AT5G22420.5 | 44.062 | 320 | 172 | 6 | 54 | 373 | 3 | 315 | 4.68e-92 | 280 |
| Msa1352380 | AT5G22420.2 | 43.771 | 297 | 164 | 3 | 77 | 373 | 3 | 296 | 3.65e-88 | 269 |
| Msa1352380 | AT5G22420.7 | 43.771 | 297 | 164 | 3 | 77 | 373 | 3 | 296 | 3.65e-88 | 269 |
| Msa1352380 | AT3G11980.1 | 37.940 | 398 | 220 | 10 | 3 | 386 | 229 | 613 | 1.47e-80 | 259 |
| Msa1352380 | AT3G44540.2 | 55.825 | 206 | 87 | 2 | 1 | 206 | 110 | 311 | 7.81e-80 | 248 |
| Msa1352380 | AT3G44540.3 | 55.825 | 206 | 87 | 2 | 1 | 206 | 110 | 311 | 7.81e-80 | 248 |
| Msa1352380 | AT3G56700.2 | 33.681 | 383 | 226 | 8 | 3 | 382 | 182 | 539 | 1.28e-64 | 215 |
| Msa1352380 | AT3G56700.1 | 31.593 | 383 | 213 | 9 | 3 | 382 | 182 | 518 | 1.87e-53 | 185 |
Find 86 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAATTTCCAGCCATTT+TGG | 0.174184 | tig0012590:+7025 | None:intergenic |
| TATATTCAAGGTCTTAAATT+TGG | 0.180226 | tig0012590:-7441 | Msa1352380:intron |
| ACACTTCATATTTGGATAAT+AGG | 0.192277 | tig0012590:+6949 | None:intergenic |
| ATGTTTCTACACTTCATATT+TGG | 0.201055 | tig0012590:+6941 | None:intergenic |
| GTGGACAAGGACCTTCATTT+TGG | 0.201357 | tig0012590:+13379 | None:intergenic |
| TTGACCCGATTAGCATTAAT+TGG | 0.205325 | tig0012590:-7125 | Msa1352380:CDS |
| TAATCACCTTTCATCAAAAT+TGG | 0.225214 | tig0012590:+13796 | None:intergenic |
| ATACGAACACGGAAAATTTA+AGG | 0.283879 | tig0012590:-7191 | Msa1352380:CDS |
| TGTTTCAAAAGTATTTAAAA+AGG | 0.290161 | tig0012590:-6897 | Msa1352380:three_prime_UTR |
| TGTTTGAAAAGTATTCAAAA+TGG | 0.294267 | tig0012590:-6991 | Msa1352380:three_prime_UTR |
| CTGGGATTACCAAGAAAATA+TGG | 0.306717 | tig0012590:+8817 | None:intergenic |
| TTTGTCCAATTAATGCTAAT+CGG | 0.324881 | tig0012590:+7120 | None:intergenic |
| AATTATTTACTACCCCAAAA+TGG | 0.331678 | tig0012590:-7039 | Msa1352380:three_prime_UTR |
| TATGTAGATACCTGCAGATT+TGG | 0.336833 | tig0012590:-8305 | Msa1352380:intron |
| ATTCCCTTGGAAACGACTAT+TGG | 0.353883 | tig0012590:+8115 | None:intergenic |
| CCGTTTCCTGGTTGGATTGA+AGG | 0.357677 | tig0012590:-9835 | Msa1352380:CDS |
| ATGTCTTAAACATCGCAAAA+AGG | 0.363896 | tig0012590:-13406 | Msa1352380:CDS |
| ACAAGCAAAGATCCGTTTCC+TGG | 0.377539 | tig0012590:-9847 | Msa1352380:CDS |
| TTGGCTTCCCATCTTTGTTT+AGG | 0.410010 | tig0012590:+8134 | None:intergenic |
| GGGAATTGCCTTGAAAAGTA+TGG | 0.413041 | tig0012590:-8098 | Msa1352380:CDS |
| TACGATATCTAAAATTGTCC+TGG | 0.424094 | tig0012590:+8798 | None:intergenic |
| TTTGTGAATACATATGTGTT+TGG | 0.427147 | tig0012590:+9949 | None:intergenic |
| AGTTATCATCATAAACATCT+TGG | 0.434245 | tig0012590:+7393 | None:intergenic |
| TAATTCTAGCTTATGTGTGC+GGG | 0.446461 | tig0012590:-10296 | Msa1352380:intron |
| ATGATGAATACGCACATTCC+TGG | 0.447431 | tig0012590:-7093 | Msa1352380:CDS |
| ACACACAGAAATGAATTTGC+TGG | 0.449134 | tig0012590:-10187 | Msa1352380:CDS |
| TTAGAGCAAATTTGCATGGT+TGG | 0.450318 | tig0012590:-9972 | Msa1352380:intron |
| CATAAACATCTTGGAAGGAA+TGG | 0.454109 | tig0012590:+7402 | None:intergenic |
| ACTCCTTGCCTAAACAAAGA+TGG | 0.462744 | tig0012590:-8142 | Msa1352380:CDS |
| TGATATGTGCCTATGGTAAA+GGG | 0.463507 | tig0012590:-8846 | Msa1352380:CDS |
| ATTTACTACCCCAAAATGGC+TGG | 0.464914 | tig0012590:-7035 | Msa1352380:three_prime_UTR |
| TTCCCATCTTTGTTTAGGCA+AGG | 0.468942 | tig0012590:+8139 | None:intergenic |
| TTGTCCAATTAATGCTAATC+GGG | 0.470692 | tig0012590:+7121 | None:intergenic |
| GATTGACGACCCATCTCAAA+TGG | 0.474980 | tig0012590:+10237 | None:intergenic |
| ATGATATGTGCCTATGGTAA+AGG | 0.478427 | tig0012590:-8847 | Msa1352380:CDS |
| TTATGTGTGCGGGGAGACTA+AGG | 0.481843 | tig0012590:-10286 | Msa1352380:CDS |
| CTGGTTGGATTGAAGGTCAA+AGG | 0.485153 | tig0012590:-9828 | Msa1352380:intron |
| CAAGAGAAACCATTTGAGAT+GGG | 0.491438 | tig0012590:-10246 | Msa1352380:CDS |
| TCAAGAGAAACCATTTGAGA+TGG | 0.493054 | tig0012590:-10247 | Msa1352380:CDS |
| CTCCTTGCCTAAACAAAGAT+GGG | 0.493790 | tig0012590:-8141 | Msa1352380:CDS |
| GTCCTTGTCCACATATCTAC+AGG | 0.498156 | tig0012590:-13368 | Msa1352380:intron |
| CTACAGATTTGACATCTCAA+TGG | 0.499005 | tig0012590:-13453 | Msa1352380:intron |
| TCAATGGGTGTTAATACAAT+GGG | 0.499396 | tig0012590:-13437 | Msa1352380:CDS |
| CTTGTACTAGTTACCATCGT+TGG | 0.503449 | tig0012590:+9865 | None:intergenic |
| GCAAAGATCCGTTTCCTGGT+TGG | 0.504628 | tig0012590:-9843 | Msa1352380:CDS |
| TATGTATTCACAAAAGCAAT+GGG | 0.505601 | tig0012590:-9940 | Msa1352380:CDS |
| CTCAATGGGTGTTAATACAA+TGG | 0.505733 | tig0012590:-13438 | Msa1352380:CDS |
| AAGGGCTATAACATGGAGAA+TGG | 0.506365 | tig0012590:-7159 | Msa1352380:CDS |
| TTGCAGCGGAATGGACAATA+AGG | 0.506628 | tig0012590:+13822 | None:intergenic |
| TACAGATTTGACATCTCAAT+GGG | 0.511926 | tig0012590:-13452 | Msa1352380:intron |
| TGGCAATTTCCCTTTACCAT+AGG | 0.514404 | tig0012590:+8837 | None:intergenic |
| AAATTTAAGGAGGGCAACAA+AGG | 0.516552 | tig0012590:-7178 | Msa1352380:CDS |
| AATTGGTAGTTGCAGCGGAA+TGG | 0.527290 | tig0012590:+13813 | None:intergenic |
| ATCAAAATTGGTAGTTGCAG+CGG | 0.535053 | tig0012590:+13808 | None:intergenic |
| CCTTCAATCCAACCAGGAAA+CGG | 0.537673 | tig0012590:+9835 | None:intergenic |
| ATTGCATACTTGACGAGACC+AGG | 0.540387 | tig0012590:+7075 | None:intergenic |
| GTTGGACGTATAATGATCAA+TGG | 0.544672 | tig0012590:+9883 | None:intergenic |
| TTAATTCTAGCTTATGTGTG+CGG | 0.546785 | tig0012590:-10297 | Msa1352380:intron |
| TCGATATGTCCTGCCACTTG+AGG | 0.547266 | tig0012590:-8050 | Msa1352380:intron |
| AAAATTAGAGCAAATTTGCA+TGG | 0.552835 | tig0012590:-9976 | Msa1352380:intron |
| GATAGTATGATATGTGCCTA+TGG | 0.564664 | tig0012590:-8853 | Msa1352380:CDS |
| ACGATATCTAAAATTGTCCT+GGG | 0.565879 | tig0012590:+8799 | None:intergenic |
| TGGGTCGTCAATCTCTAGAA+AGG | 0.568466 | tig0012590:-10227 | Msa1352380:CDS |
| TCTAACAAACCTCAAGTGGC+AGG | 0.578523 | tig0012590:+8041 | None:intergenic |
| GATACTTACCTGTAGATATG+TGG | 0.578543 | tig0012590:+13360 | None:intergenic |
| AATTTAAGGAGGGCAACAAA+GGG | 0.581635 | tig0012590:-7177 | Msa1352380:CDS |
| GGCAACAAAGGGCTATAACA+TGG | 0.581652 | tig0012590:-7166 | Msa1352380:CDS |
| CAATTGATGACCAAATCTGC+AGG | 0.583208 | tig0012590:+8295 | None:intergenic |
| ATCATCATAAACATCTTGGA+AGG | 0.583944 | tig0012590:+7397 | None:intergenic |
| ATATGTATTCACAAAAGCAA+TGG | 0.587895 | tig0012590:-9941 | Msa1352380:CDS |
| CTTTGACCTTCAATCCAACC+AGG | 0.590282 | tig0012590:+9829 | None:intergenic |
| GAAGCCAATAGTCGTTTCCA+AGG | 0.596362 | tig0012590:-8119 | Msa1352380:CDS |
| CGGGGAGACTAAGGAAGGAA+AGG | 0.602288 | tig0012590:-10277 | Msa1352380:CDS |
| TCGGTCTAACAAACCTCAAG+TGG | 0.615541 | tig0012590:+8037 | None:intergenic |
| AATATTGATGGGAAATGCTG+TGG | 0.630210 | tig0012590:+8173 | None:intergenic |
| TGAATTACAAGCAATGAATG+TGG | 0.639826 | tig0012590:-10151 | Msa1352380:CDS |
| CGAACACGGAAAATTTAAGG+AGG | 0.646321 | tig0012590:-7188 | Msa1352380:CDS |
| TAACTACAAGAAAATACGAA+TGG | 0.647002 | tig0012590:-7375 | Msa1352380:CDS |
| TTCTTAATGAAGAAGAAACA+TGG | 0.655254 | tig0012590:+8218 | None:intergenic |
| AATTCTAGCTTATGTGTGCG+GGG | 0.658485 | tig0012590:-10295 | Msa1352380:intron |
| TAGCTTTGATGATACGAACA+CGG | 0.658725 | tig0012590:-7202 | Msa1352380:CDS |
| GTGTGCGGGGAGACTAAGGA+AGG | 0.662909 | tig0012590:-10282 | Msa1352380:CDS |
| GATCATTATACGTCCAACGA+TGG | 0.666558 | tig0012590:-9878 | Msa1352380:CDS |
| TACCTGTAGATATGTGGACA+AGG | 0.671648 | tig0012590:+13366 | None:intergenic |
| AAGCCAATAGTCGTTTCCAA+GGG | 0.679107 | tig0012590:-8118 | Msa1352380:CDS |
| GAACACGGAAAATTTAAGGA+GGG | 0.691082 | tig0012590:-7187 | Msa1352380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTTTTTAAATTAA+TGG | + | tig0012590:8422-8441 | None:intergenic | 0.0% |
| !!! | TAATTATATTTTATATATAA+TGG | - | tig0012590:11784-11803 | Msa1352380:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTGACAAA+AGG | + | tig0012590:7780-7799 | None:intergenic | 10.0% |
| !! | AAAACTATTAAAATTAAGTA+AGG | + | tig0012590:7882-7901 | None:intergenic | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | - | tig0012590:8204-8223 | Msa1352380:CDS | 10.0% |
| !!! | TAAGTAAATTTTTTTTTTGT+AGG | - | tig0012590:8266-8285 | Msa1352380:CDS | 10.0% |
| !!! | AAGTAAATTTTTTTTTTGTA+GGG | - | tig0012590:8267-8286 | Msa1352380:CDS | 10.0% |
| !!! | TTTTAAATTAATGGTAAAAT+TGG | + | tig0012590:8413-8432 | None:intergenic | 10.0% |
| !! | AGAGTAATATATATTAAAAT+AGG | - | tig0012590:10277-10296 | Msa1352380:CDS | 10.0% |
| !! | TAATATATATTAAAATAGGA+GGG | - | tig0012590:10281-10300 | Msa1352380:CDS | 10.0% |
| !! | TAACAAAAAAAATTAAAAAC+TGG | - | tig0012590:10312-10331 | Msa1352380:intron | 10.0% |
| !!! | TTTTTAATAAAAGATTGATA+TGG | - | tig0012590:11107-11126 | Msa1352380:intron | 10.0% |
| !! | CATTTATGAATAATTTATTT+GGG | + | tig0012590:11206-11225 | None:intergenic | 10.0% |
| !! | ACATTTATGAATAATTTATT+TGG | + | tig0012590:11207-11226 | None:intergenic | 10.0% |
| !!! | AAATACATTGTTTTTTTTTT+TGG | - | tig0012590:11316-11335 | Msa1352380:intron | 10.0% |
| !! | CTATATCAAAATTTAAATTA+AGG | - | tig0012590:11669-11688 | Msa1352380:intron | 10.0% |
| !!! | GATATTTTCATAAAAAATAA+TGG | + | tig0012590:12132-12151 | None:intergenic | 10.0% |
| !!! | TTAATCCTTTTAATATTTTT+TGG | - | tig0012590:13233-13252 | Msa1352380:intron | 10.0% |
| !!! | ATGAAAATATGAATTATTTT+TGG | - | tig0012590:13471-13490 | Msa1352380:intron | 10.0% |
| !!! | ATGATCAATTTAATTTAACA+TGG | + | tig0012590:7199-7218 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTCACAAGTAT+AGG | + | tig0012590:7507-7526 | None:intergenic | 15.0% |
| !! | TACTTCTATATTATTTGTTT+CGG | + | tig0012590:7536-7555 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | tig0012590:7954-7973 | None:intergenic | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | + | tig0012590:8038-8057 | None:intergenic | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | tig0012590:8296-8315 | Msa1352380:CDS | 15.0% |
| !! | TAGATATGTAAGAATAAAAT+TGG | + | tig0012590:10197-10216 | None:intergenic | 15.0% |
| !! | GTAATATATATTAAAATAGG+AGG | - | tig0012590:10280-10299 | Msa1352380:CDS | 15.0% |
| !! | AAAAAAAATTAAAAACTGGA+AGG | - | tig0012590:10316-10335 | Msa1352380:intron | 15.0% |
| !! | ACTGTATAAAATAAAAAGTA+AGG | + | tig0012590:10652-10671 | None:intergenic | 15.0% |
| !!! | TTATTTAAGAGTTTTAAACT+TGG | + | tig0012590:11274-11293 | None:intergenic | 15.0% |
| !! | AACTCTTAAATAATGTTATT+AGG | - | tig0012590:11281-11300 | Msa1352380:intron | 15.0% |
| !! | ACTCTTAAATAATGTTATTA+GGG | - | tig0012590:11282-11301 | Msa1352380:intron | 15.0% |
| !!! | ATTTTTTTTGATAGAAATGA+GGG | + | tig0012590:11348-11367 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTGATAGAAATG+AGG | + | tig0012590:11349-11368 | None:intergenic | 15.0% |
| !! | AATATATTAAAGATAGTATG+AGG | - | tig0012590:11524-11543 | Msa1352380:intron | 15.0% |
| !! | CTTGATAAAAAAAAAATATG+AGG | - | tig0012590:11601-11620 | Msa1352380:intron | 15.0% |
| !!! | ACACAAAATATTATTTTGTT+GGG | - | tig0012590:11637-11656 | Msa1352380:intron | 15.0% |
| !! | ATATAATTAGCAACTAAAAT+AGG | + | tig0012590:11773-11792 | None:intergenic | 15.0% |
| !! | CTTTAATCCAAAATTTAAAT+AGG | + | tig0012590:12061-12080 | None:intergenic | 15.0% |
| !! | GCAAGTTATTTAAAAATTTA+AGG | + | tig0012590:12260-12279 | None:intergenic | 15.0% |
| !!! | ATAAAGTAATTTTCTACATT+CGG | - | tig0012590:12766-12785 | Msa1352380:intron | 15.0% |
| !! | TAGTGAATTAAATAATATGT+TGG | + | tig0012590:13043-13062 | None:intergenic | 15.0% |
| !! | AAAAGGATTAATTAGTAAAA+GGG | + | tig0012590:13224-13243 | None:intergenic | 15.0% |
| !! | TAAAAGGATTAATTAGTAAA+AGG | + | tig0012590:13225-13244 | None:intergenic | 15.0% |
| !! | ATATGCCAAAAAATATTAAA+AGG | + | tig0012590:13241-13260 | None:intergenic | 15.0% |
| !!! | AATTCATATTTTCATGAATA+TGG | + | tig0012590:13466-13485 | None:intergenic | 15.0% |
| !!! | TGTTTCAAAAGTATTTAAAA+AGG | - | tig0012590:13802-13821 | Msa1352380:intron | 15.0% |
| !! | CATTCAATAAATGATGTATA+CGG | - | tig0012590:7049-7068 | Msa1352380:exon | 20.0% |
| !!! | TAAGCAAAAATTCACATTTT+AGG | + | tig0012590:7113-7132 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATAATTGTAAC+CGG | - | tig0012590:7123-7142 | Msa1352380:CDS | 20.0% |
| !!! | GTTATTTTTTTTTTCTGTCA+AGG | + | tig0012590:7413-7432 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTGACAAAAGG+TGG | + | tig0012590:7777-7796 | None:intergenic | 20.0% |
| !! | TTAACCCAAAAAACATTATA+AGG | + | tig0012590:7815-7834 | None:intergenic | 20.0% |
| !!! | TTTTGGGTTAATTATGTTTT+TGG | - | tig0012590:7824-7843 | Msa1352380:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | - | tig0012590:7984-8003 | Msa1352380:intron | 20.0% |
| !!! | TAACCAAAATTTATTTTAGC+AGG | - | tig0012590:8232-8251 | Msa1352380:CDS | 20.0% |
| !!! | AACCAAAATTTATTTTAGCA+GGG | - | tig0012590:8233-8252 | Msa1352380:CDS | 20.0% |
| !!! | ACTTGTGTTAAATATGTTTT+TGG | + | tig0012590:8354-8373 | None:intergenic | 20.0% |
| !!! | TTTCAGCTAATTTATTTTGA+AGG | - | tig0012590:8565-8584 | Msa1352380:intron | 20.0% |
| !! | AGTCAAAAGAAACATATATA+AGG | + | tig0012590:8887-8906 | None:intergenic | 20.0% |
| !!! | ATCCAATTTTGATTAAAGAA+GGG | + | tig0012590:9027-9046 | None:intergenic | 20.0% |
| !!! | AATCCAATTTTGATTAAAGA+AGG | + | tig0012590:9028-9047 | None:intergenic | 20.0% |
| !! | AACATATATTTCTTCAACAA+CGG | + | tig0012590:9078-9097 | None:intergenic | 20.0% |
| !! | TTCATCAATGAGAATAATTA+AGG | - | tig0012590:9163-9182 | Msa1352380:intron | 20.0% |
| !! | ACAAATTCAATCAATGATTT+GGG | + | tig0012590:9530-9549 | None:intergenic | 20.0% |
| !! | TACAAATTCAATCAATGATT+TGG | + | tig0012590:9531-9550 | None:intergenic | 20.0% |
| !! | TTTCTTTCAATCTAAATAAG+TGG | + | tig0012590:9705-9724 | None:intergenic | 20.0% |
| !! | TATTTAGATTGAAAGAAAAG+AGG | - | tig0012590:9707-9726 | Msa1352380:intron | 20.0% |
| !! | TACTCTATTTATGTATTGTT+CGG | + | tig0012590:10263-10282 | None:intergenic | 20.0% |
| !! | TGAAAAATTATGGAATTGAA+AGG | - | tig0012590:10595-10614 | Msa1352380:intron | 20.0% |
| !! | AGTAAGGAAAAAAAAAAGTA+TGG | + | tig0012590:10636-10655 | None:intergenic | 20.0% |
| !!! | AGTAACATCTTTTTTTATAG+AGG | + | tig0012590:11180-11199 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTCAAATAGTC+TGG | - | tig0012590:11375-11394 | Msa1352380:intron | 20.0% |
| !! | AGCAATTAAATTAAAAACAC+AGG | + | tig0012590:11583-11602 | None:intergenic | 20.0% |
| !!! | GACACAAAATATTATTTTGT+TGG | - | tig0012590:11636-11655 | Msa1352380:intron | 20.0% |
| !! | CAAAGAGTGATAAAAAAAAA+AGG | + | tig0012590:11973-11992 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTATCACTCTT+TGG | - | tig0012590:11971-11990 | Msa1352380:intron | 20.0% |
| !! | AAAGAAAAATGAACTATCAA+AGG | + | tig0012590:12003-12022 | None:intergenic | 20.0% |
| !!! | ATTGAGACCTATTTAAATTT+TGG | - | tig0012590:12051-12070 | Msa1352380:intron | 20.0% |
| !!! | AGTTTTCATGAAATATTGAT+GGG | + | tig0012590:12540-12559 | None:intergenic | 20.0% |
| !! | GTTGCTTCTTTAAATATTAA+TGG | - | tig0012590:12693-12712 | Msa1352380:intron | 20.0% |
| !!! | TAAAGTAATTTTCTACATTC+GGG | - | tig0012590:12767-12786 | Msa1352380:intron | 20.0% |
| !!! | TATTTTTTGGCATATATTCA+AGG | - | tig0012590:13246-13265 | Msa1352380:intron | 20.0% |
| !! | TATATTCAAGGTCTTAAATT+TGG | - | tig0012590:13258-13277 | Msa1352380:intron | 20.0% |
| !! | TAACATCTAGTAAATAGAAA+AGG | + | tig0012590:13415-13434 | None:intergenic | 20.0% |
| !!! | TGTTTGAAAAGTATTCAAAA+TGG | - | tig0012590:13708-13727 | Msa1352380:intron | 20.0% |
| ! | TAATCACCTTTCATCAAAAT+TGG | + | tig0012590:6906-6925 | None:intergenic | 25.0% |
| ! | GAAAGGTGATTAAAGAATTA+AGG | - | tig0012590:6914-6933 | Msa1352380:three_prime_UTR | 25.0% |
| !!! | CTCGTTTTGAAAAAAAAACA+AGG | + | tig0012590:6955-6974 | None:intergenic | 25.0% |
| ! | TATAATATATGCAAGGTTTG+AGG | + | tig0012590:6985-7004 | None:intergenic | 25.0% |
| !!! | TACCACCTTATAATGTTTTT+TGG | - | tig0012590:7807-7826 | Msa1352380:intron | 25.0% |
| !!! | ACCACCTTATAATGTTTTTT+GGG | - | tig0012590:7808-7827 | Msa1352380:intron | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | tig0012590:7943-7962 | None:intergenic | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | - | tig0012590:8008-8027 | Msa1352380:intron | 25.0% |
| ! | TTTAGTAAATGAACCTTTCA+TGG | - | tig0012590:8154-8173 | Msa1352380:CDS | 25.0% |
| !! | TTAGAAGGTCACAATTTTAT+AGG | - | tig0012590:8326-8345 | Msa1352380:intron | 25.0% |
| !! | TAGAAGGTCACAATTTTATA+GGG | - | tig0012590:8327-8346 | Msa1352380:intron | 25.0% |
| !! | TAATCTAGCTCAAAACTAAA+AGG | - | tig0012590:8515-8534 | Msa1352380:intron | 25.0% |
| ! | GTTAATAAAGAACAAGTTTG+TGG | + | tig0012590:8545-8564 | None:intergenic | 25.0% |
| ! | TACCCTTCTTTAATCAAAAT+TGG | - | tig0012590:9022-9041 | Msa1352380:intron | 25.0% |
| ! | AGGAAAGTTTATTCTAACTT+TGG | + | tig0012590:9204-9223 | None:intergenic | 25.0% |
| ! | AATGACTATTATCTCAAAGA+AGG | + | tig0012590:9224-9243 | None:intergenic | 25.0% |
| ! | AAACATCGTTAAAAACGTAA+AGG | - | tig0012590:9381-9400 | Msa1352380:intron | 25.0% |
| ! | ACGAAATCACAAAAATACAA+AGG | - | tig0012590:9656-9675 | Msa1352380:intron | 25.0% |
| ! | CGAAATCACAAAAATACAAA+GGG | - | tig0012590:9657-9676 | Msa1352380:intron | 25.0% |
| ! | AAAATAAATTCAGTTACAGC+CGG | + | tig0012590:9855-9874 | None:intergenic | 25.0% |
| ! | AAAACTTTGCATCAAGATTA+AGG | + | tig0012590:9907-9926 | None:intergenic | 25.0% |
| ! | TGTGCAGAAAATATAAGTAT+AGG | + | tig0012590:10081-10100 | None:intergenic | 25.0% |
| ! | AAGTATGCGATGAAAAATTA+TGG | - | tig0012590:10585-10604 | Msa1352380:intron | 25.0% |
| ! | AAAATTAGAGCAAATTTGCA+TGG | - | tig0012590:10723-10742 | Msa1352380:intron | 25.0% |
| ! | TTTGTGAATACATATGTGTT+TGG | + | tig0012590:10753-10772 | None:intergenic | 25.0% |
| ! | ATATGTATTCACAAAAGCAA+TGG | - | tig0012590:10758-10777 | Msa1352380:intron | 25.0% |
| ! | TATGTATTCACAAAAGCAAT+GGG | - | tig0012590:10759-10778 | Msa1352380:intron | 25.0% |
| ! | AAAAGAAAACATGAACATGA+TGG | + | tig0012590:11085-11104 | None:intergenic | 25.0% |
| !! | CTTTCTTAGATGTCTATTTT+TGG | - | tig0012590:11233-11252 | Msa1352380:intron | 25.0% |
| !! | AATAATGTTATTAGGGTACT+TGG | - | tig0012590:11289-11308 | Msa1352380:intron | 25.0% |
| ! | CTTCATTTATTCATCTTAAG+AGG | + | tig0012590:11415-11434 | None:intergenic | 25.0% |
| !! | GAGTTTGAATTCTTTTTATG+TGG | - | tig0012590:11546-11565 | Msa1352380:intron | 25.0% |
| !! | ATATGCACTAGTTATTTCAA+CGG | - | tig0012590:12325-12344 | Msa1352380:intron | 25.0% |
| !! | ACATGGTAGATGAAATTTTT+AGG | + | tig0012590:12467-12486 | None:intergenic | 25.0% |
| ! | TTCTTAATGAAGAAGAAACA+TGG | + | tig0012590:12484-12503 | None:intergenic | 25.0% |
| !! | GAGTTTTCATGAAATATTGA+TGG | + | tig0012590:12541-12560 | None:intergenic | 25.0% |
| ! | AAAGAAGCAACTAAATCAAT+CGG | + | tig0012590:12684-12703 | None:intergenic | 25.0% |
| !! | AAGAAAGTTCATTGGTAATT+TGG | + | tig0012590:13009-13028 | None:intergenic | 25.0% |
| ! | CTGTAAAAAAGAAAGTTCAT+TGG | + | tig0012590:13017-13036 | None:intergenic | 25.0% |
| !!! | TTCAACACATATTTTCTAGT+TGG | - | tig0012590:13065-13084 | Msa1352380:intron | 25.0% |
| ! | TGTTTCTCACTAAATTTATG+TGG | - | tig0012590:13100-13119 | Msa1352380:intron | 25.0% |
| !!! | TCTCAAACACACATTTTAAT+TGG | + | tig0012590:13162-13181 | None:intergenic | 25.0% |
| ! | AGTTATCATCATAAACATCT+TGG | + | tig0012590:13309-13328 | None:intergenic | 25.0% |
| ! | TAACTACAAGAAAATACGAA+TGG | - | tig0012590:13324-13343 | Msa1352380:intron | 25.0% |
| ! | TTTGTCCAATTAATGCTAAT+CGG | + | tig0012590:13582-13601 | None:intergenic | 25.0% |
| ! | AATTATTTACTACCCCAAAA+TGG | - | tig0012590:13660-13679 | Msa1352380:intron | 25.0% |
| ! | ACACTTCATATTTGGATAAT+AGG | + | tig0012590:13753-13772 | None:intergenic | 25.0% |
| !! | ATGTTTCTACACTTCATATT+TGG | + | tig0012590:13761-13780 | None:intergenic | 25.0% |
| !! | CAACTACCAATTTTGATGAA+AGG | - | tig0012590:6897-6916 | Msa1352380:three_prime_UTR | 30.0% |
| ! | GAGAGTGTATAATATATGCA+AGG | + | tig0012590:6992-7011 | None:intergenic | 30.0% |
| TGCATATATTATACACTCTC+TGG | - | tig0012590:6992-7011 | Msa1352380:three_prime_UTR | 30.0% | |
| TACAGATTTGACATCTCAAT+GGG | - | tig0012590:7247-7266 | Msa1352380:intron | 30.0% | |
| TCAATGGGTGTTAATACAAT+GGG | - | tig0012590:7262-7281 | Msa1352380:intron | 30.0% | |
| ATGTCTTAAACATCGCAAAA+AGG | - | tig0012590:7293-7312 | Msa1352380:intron | 30.0% | |
| ! | TTTTTCACAAGTATAGGACA+AGG | + | tig0012590:7501-7520 | None:intergenic | 30.0% |
| ACCCAAAAAACATTATAAGG+TGG | + | tig0012590:7812-7831 | None:intergenic | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | + | tig0012590:7867-7886 | None:intergenic | 30.0% | |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | + | tig0012590:7911-7930 | None:intergenic | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | + | tig0012590:7912-7931 | None:intergenic | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | + | tig0012590:8035-8054 | None:intergenic | 30.0% |
| ! | GTCCCTGCTAAAATAAATTT+TGG | + | tig0012590:8238-8257 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | - | tig0012590:8311-8330 | Msa1352380:intron | 30.0% | |
| TTTGAAGGTGAGAAAAACAT+AGG | - | tig0012590:8580-8599 | Msa1352380:intron | 30.0% | |
| GAACAAGGATAAACTATATG+TGG | + | tig0012590:8691-8710 | None:intergenic | 30.0% | |
| TATTGTAATCCCAGATTGTA+GGG | + | tig0012590:8715-8734 | None:intergenic | 30.0% | |
| TTATTGTAATCCCAGATTGT+AGG | + | tig0012590:8716-8735 | None:intergenic | 30.0% | |
| TAAATCTCTGCATTGAGATT+AGG | + | tig0012590:8778-8797 | None:intergenic | 30.0% | |
| ATAGTGTTTGCACAAATTGT+AGG | - | tig0012590:8819-8838 | Msa1352380:CDS | 30.0% | |
| TGAATGTTGAGATATCTTAG+AGG | - | tig0012590:9112-9131 | Msa1352380:intron | 30.0% | |
| GTTTATTCTAACTTTGGCAA+GGG | + | tig0012590:9198-9217 | None:intergenic | 30.0% | |
| AGTTTATTCTAACTTTGGCA+AGG | + | tig0012590:9199-9218 | None:intergenic | 30.0% | |
| GTCGTTGTATGATATTAACT+TGG | + | tig0012590:9434-9453 | None:intergenic | 30.0% | |
| AAGAGGAAAAAAAGATGTAG+AGG | - | tig0012590:9724-9743 | Msa1352380:intron | 30.0% | |
| AGAGGAAAAAAAGATGTAGA+GGG | - | tig0012590:9725-9744 | Msa1352380:intron | 30.0% | |
| AAGAAAGTTTAGAGAGAGAT+TGG | - | tig0012590:9804-9823 | Msa1352380:intron | 30.0% | |
| ATCAAGATTAAGGTCAATTG+AGG | + | tig0012590:9897-9916 | None:intergenic | 30.0% | |
| TTAAGAGCTTTCAAACACTT+AGG | - | tig0012590:9958-9977 | Msa1352380:CDS | 30.0% | |
| TAAGAGCTTTCAAACACTTA+GGG | - | tig0012590:9959-9978 | Msa1352380:CDS | 30.0% | |
| AAGCATGATTGAGAACAATT+AGG | + | tig0012590:10126-10145 | None:intergenic | 30.0% | |
| !! | TTAATTCTAGCTTATGTGTG+CGG | - | tig0012590:10402-10421 | Msa1352380:intron | 30.0% |
| TGAATTACAAGCAATGAATG+TGG | - | tig0012590:10548-10567 | Msa1352380:intron | 30.0% | |
| ! | GATTGAATATTTTCTCTGCT+TGG | - | tig0012590:11052-11071 | Msa1352380:intron | 30.0% |
| !!! | TTTTTTGTCAAATAGTCTGG+TGG | - | tig0012590:11378-11397 | Msa1352380:intron | 30.0% |
| ! | TTTTTGTCAAATAGTCTGGT+GGG | - | tig0012590:11379-11398 | Msa1352380:intron | 30.0% |
| ! | GAATTCTTTTTATGTGGTTC+AGG | - | tig0012590:11552-11571 | Msa1352380:intron | 30.0% |
| ! | ACGATATCTAAAATTGTCCT+GGG | + | tig0012590:11903-11922 | None:intergenic | 30.0% |
| ! | TACGATATCTAAAATTGTCC+TGG | + | tig0012590:11904-11923 | None:intergenic | 30.0% |
| AAATAGGTCTCAATTTACGT+GGG | + | tig0012590:12045-12064 | None:intergenic | 30.0% | |
| TAAATAGGTCTCAATTTACG+TGG | + | tig0012590:12046-12065 | None:intergenic | 30.0% | |
| AAGGATTGAGCTTCTTAAAT+TGG | + | tig0012590:12241-12260 | None:intergenic | 30.0% | |
| ! | TATGCACTAGTTATTTCAAC+GGG | - | tig0012590:12326-12345 | Msa1352380:intron | 30.0% |
| ! | TAATTTTCTACATTCGGGAT+AGG | - | tig0012590:12772-12791 | Msa1352380:intron | 30.0% |
| TTTCTCCGATTTCAAAATCT+GGG | + | tig0012590:12849-12868 | None:intergenic | 30.0% | |
| ! | TTTTCTCCGATTTCAAAATC+TGG | + | tig0012590:12850-12869 | None:intergenic | 30.0% |
| ! | AGACGAAGTGGATATATTTT+TGG | - | tig0012590:12969-12988 | Msa1352380:intron | 30.0% |
| ATCATCATAAACATCTTGGA+AGG | + | tig0012590:13305-13324 | None:intergenic | 30.0% | |
| !! | ACTGCTTTAAAAAACACGTA+AGG | + | tig0012590:13376-13395 | None:intergenic | 30.0% |
| ATACGAACACGGAAAATTTA+AGG | - | tig0012590:13508-13527 | Msa1352380:intron | 30.0% | |
| TTGTCCAATTAATGCTAATC+GGG | + | tig0012590:13581-13600 | None:intergenic | 30.0% | |
| !! | TAGAAATTTCCAGCCATTTT+GGG | + | tig0012590:13676-13695 | None:intergenic | 30.0% |
| ! | ATAGAAATTTCCAGCCATTT+TGG | + | tig0012590:13677-13696 | None:intergenic | 30.0% |
| ! | ATCAAAATTGGTAGTTGCAG+CGG | + | tig0012590:6894-6913 | None:intergenic | 35.0% |
| TTGCTTATAATTGTAACCGG+AGG | - | tig0012590:7126-7145 | Msa1352380:CDS | 35.0% | |
| TGCTTATAATTGTAACCGGA+GGG | - | tig0012590:7127-7146 | Msa1352380:CDS | 35.0% | |
| ! | TGGAAAAGTATGAGTTGTCT+TGG | + | tig0012590:7179-7198 | None:intergenic | 35.0% |
| CATTGAGATGTCAAATCTGT+AGG | + | tig0012590:7248-7267 | None:intergenic | 35.0% | |
| CTACAGATTTGACATCTCAA+TGG | - | tig0012590:7246-7265 | Msa1352380:intron | 35.0% | |
| CTCAATGGGTGTTAATACAA+TGG | - | tig0012590:7261-7280 | Msa1352380:intron | 35.0% | |
| !! | AAAAAGGTGTCCCAAAATGA+AGG | - | tig0012590:7309-7328 | Msa1352380:intron | 35.0% |
| GATACTTACCTGTAGATATG+TGG | + | tig0012590:7342-7361 | None:intergenic | 35.0% | |
| ! | TATCAATTTTTCCTCGCGAT+TGG | - | tig0012590:7735-7754 | Msa1352380:intron | 35.0% |
| ! | ATCAATTTTTCCTCGCGATT+GGG | - | tig0012590:7736-7755 | Msa1352380:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | + | tig0012590:7851-7870 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | + | tig0012590:7852-7871 | None:intergenic | 35.0% |
| ! | CAAGTTTAGAACACCATGAA+AGG | + | tig0012590:8170-8189 | None:intergenic | 35.0% |
| !!! | CTTTTGACTTTTGCTAGACA+AGG | - | tig0012590:8898-8917 | Msa1352380:intron | 35.0% |
| TGTAAATACGTGTGTATGCT+TGG | - | tig0012590:8980-8999 | Msa1352380:intron | 35.0% | |
| GTAAATACGTGTGTATGCTT+GGG | - | tig0012590:8981-9000 | Msa1352380:intron | 35.0% | |
| AGATATCTCAACATTCACTC+AGG | + | tig0012590:9109-9128 | None:intergenic | 35.0% | |
| ACTGAAGTCGATCTTTCAAT+AGG | - | tig0012590:9555-9574 | Msa1352380:intron | 35.0% | |
| GAGGAAAAAAAGATGTAGAG+GGG | - | tig0012590:9726-9745 | Msa1352380:intron | 35.0% | |
| ATTATCACTAGTAACAGCCA+CGG | + | tig0012590:10366-10385 | None:intergenic | 35.0% | |
| !! | TAATTCTAGCTTATGTGTGC+GGG | - | tig0012590:10403-10422 | Msa1352380:intron | 35.0% |
| TCAAGAGAAACCATTTGAGA+TGG | - | tig0012590:10452-10471 | Msa1352380:intron | 35.0% | |
| ! | CAAGAGAAACCATTTGAGAT+GGG | - | tig0012590:10453-10472 | Msa1352380:intron | 35.0% |
| ACACACAGAAATGAATTTGC+TGG | - | tig0012590:10512-10531 | Msa1352380:intron | 35.0% | |
| TTAGAGCAAATTTGCATGGT+TGG | - | tig0012590:10727-10746 | Msa1352380:intron | 35.0% | |
| GTTGGACGTATAATGATCAA+TGG | + | tig0012590:10819-10838 | None:intergenic | 35.0% | |
| ! | AATATTTTCACGTCCAACGA+TGG | - | tig0012590:10939-10958 | Msa1352380:intron | 35.0% |
| ATAGCTTAGCTTAGCTATCA+GGG | + | tig0012590:11477-11496 | None:intergenic | 35.0% | |
| TATAGCTTAGCTTAGCTATC+AGG | + | tig0012590:11478-11497 | None:intergenic | 35.0% | |
| GATAGTATGATATGTGCCTA+TGG | - | tig0012590:11846-11865 | Msa1352380:intron | 35.0% | |
| ATGATATGTGCCTATGGTAA+AGG | - | tig0012590:11852-11871 | Msa1352380:intron | 35.0% | |
| TGATATGTGCCTATGGTAAA+GGG | - | tig0012590:11853-11872 | Msa1352380:intron | 35.0% | |
| ! | GGGAAATTGCCATATTTTCT+TGG | - | tig0012590:11873-11892 | Msa1352380:intron | 35.0% |
| CTGGGATTACCAAGAAAATA+TGG | + | tig0012590:11885-11904 | None:intergenic | 35.0% | |
| !! | CATATTTTCTTGGTAATCCC+AGG | - | tig0012590:11883-11902 | Msa1352380:intron | 35.0% |
| ! | ATGCACTAGTTATTTCAACG+GGG | - | tig0012590:12327-12346 | Msa1352380:intron | 35.0% |
| TATGTAGATACCTGCAGATT+TGG | - | tig0012590:12394-12413 | Msa1352380:intron | 35.0% | |
| ! | TGGACATCAGAAATTTTGAG+AGG | + | tig0012590:12509-12528 | None:intergenic | 35.0% |
| AATATTGATGGGAAATGCTG+TGG | + | tig0012590:12529-12548 | None:intergenic | 35.0% | |
| ! | AAAAGCAGCCATACTTTTCA+AGG | + | tig0012590:12612-12631 | None:intergenic | 35.0% |
| CGATTTCAAAATCTGGGTAT+GGG | + | tig0012590:12843-12862 | None:intergenic | 35.0% | |
| !!! | CCATACCCAGATTTTGAAAT+CGG | - | tig0012590:12841-12860 | Msa1352380:intron | 35.0% |
| ! | TTTTCATTGGGTTTGGGTAT+GGG | + | tig0012590:12879-12898 | None:intergenic | 35.0% |
| ! | ATTTTCATTGGGTTTGGGTA+TGG | + | tig0012590:12880-12899 | None:intergenic | 35.0% |
| ATACCCAAACCCAATGAAAA+TGG | - | tig0012590:12879-12898 | Msa1352380:intron | 35.0% | |
| TACCCAAACCCAATGAAAAT+GGG | - | tig0012590:12880-12899 | Msa1352380:intron | 35.0% | |
| CATAAACATCTTGGAAGGAA+TGG | + | tig0012590:13300-13319 | None:intergenic | 35.0% | |
| !! | TAGCTTTGATGATACGAACA+CGG | - | tig0012590:13497-13516 | Msa1352380:intron | 35.0% |
| GAACACGGAAAATTTAAGGA+GGG | - | tig0012590:13512-13531 | Msa1352380:intron | 35.0% | |
| AAATTTAAGGAGGGCAACAA+AGG | - | tig0012590:13521-13540 | Msa1352380:intron | 35.0% | |
| AATTTAAGGAGGGCAACAAA+GGG | - | tig0012590:13522-13541 | Msa1352380:intron | 35.0% | |
| TTGACCCGATTAGCATTAAT+TGG | - | tig0012590:13574-13593 | Msa1352380:intron | 35.0% | |
| !! | AGAAATTTCCAGCCATTTTG+GGG | + | tig0012590:13675-13694 | None:intergenic | 35.0% |
| ! | TGGACAAGGACCTTCATTTT+GGG | + | tig0012590:7322-7341 | None:intergenic | 40.0% |
| TACCTGTAGATATGTGGACA+AGG | + | tig0012590:7336-7355 | None:intergenic | 40.0% | |
| TTGAGATTAGGAAGTCCTCT+AGG | + | tig0012590:8766-8785 | None:intergenic | 40.0% | |
| GTGATTTCGTCGTCAAATTG+TGG | + | tig0012590:9646-9665 | None:intergenic | 40.0% | |
| ! | AGATGTAGAGGGGTGATTTT+AGG | - | tig0012590:9736-9755 | Msa1352380:intron | 40.0% |
| ! | CATCGAAGAAGAGTGGTTTT+AGG | + | tig0012590:9773-9792 | None:intergenic | 40.0% |
| CTAAAACCACTCTTCTTCGA+TGG | - | tig0012590:9771-9790 | Msa1352380:intron | 40.0% | |
| CTTAACGAGCTATGTGTCAT+GGG | + | tig0012590:9937-9956 | None:intergenic | 40.0% | |
| !! | AGGACTTTGACTTGTTACAG+AGG | - | tig0012590:10039-10058 | Msa1352380:intron | 40.0% |
| GGTACAAAGTAGCAGATAGT+TGG | + | tig0012590:10242-10261 | None:intergenic | 40.0% | |
| TTATCACTAGTAACAGCCAC+GGG | + | tig0012590:10365-10384 | None:intergenic | 40.0% | |
| !! | AATTCTAGCTTATGTGTGCG+GGG | - | tig0012590:10404-10423 | Msa1352380:intron | 40.0% |
| GATCATTATACGTCCAACGA+TGG | - | tig0012590:10821-10840 | Msa1352380:intron | 40.0% | |
| CTTGTACTAGTTACCATCGT+TGG | + | tig0012590:10837-10856 | None:intergenic | 40.0% | |
| CTTGTACTAGTTACCATCGT+TGG | + | tig0012590:10837-10856 | None:intergenic | 40.0% | |
| GTGAATACGAGTAGAGTTCA+AGG | - | tig0012590:11131-11150 | Msa1352380:intron | 40.0% | |
| TGGCAATTTCCCTTTACCAT+AGG | + | tig0012590:11865-11884 | None:intergenic | 40.0% | |
| !! | ATTTACGTGGGTGTTGAGTA+CGG | + | tig0012590:12033-12052 | None:intergenic | 40.0% |
| ! | CAATTGATGACCAAATCTGC+AGG | + | tig0012590:12407-12426 | None:intergenic | 40.0% |
| ACTCCTTGCCTAAACAAAGA+TGG | - | tig0012590:12557-12576 | Msa1352380:intron | 40.0% | |
| CTCCTTGCCTAAACAAAGAT+GGG | - | tig0012590:12558-12577 | Msa1352380:intron | 40.0% | |
| ! | TTCCCATCTTTGTTTAGGCA+AGG | + | tig0012590:12563-12582 | None:intergenic | 40.0% |
| ! | TTGGCTTCCCATCTTTGTTT+AGG | + | tig0012590:12568-12587 | None:intergenic | 40.0% |
| AAGCCAATAGTCGTTTCCAA+GGG | - | tig0012590:12581-12600 | Msa1352380:intron | 40.0% | |
| ATTCCCTTGGAAACGACTAT+TGG | + | tig0012590:12587-12606 | None:intergenic | 40.0% | |
| !! | ACTTTTCAAGGCAATTCCCT+TGG | + | tig0012590:12600-12619 | None:intergenic | 40.0% |
| GGGAATTGCCTTGAAAAGTA+TGG | - | tig0012590:12601-12620 | Msa1352380:intron | 40.0% | |
| ATTCGGGATAGGTTTGAGTA+TGG | - | tig0012590:12783-12802 | Msa1352380:intron | 40.0% | |
| TTCGGGATAGGTTTGAGTAT+GGG | - | tig0012590:12784-12803 | Msa1352380:intron | 40.0% | |
| GATAGGTTTGAGTATGGGTT+CGG | - | tig0012590:12789-12808 | Msa1352380:intron | 40.0% | |
| ATAGGTTTGAGTATGGGTTC+GGG | - | tig0012590:12790-12809 | Msa1352380:intron | 40.0% | |
| CCGATTTCAAAATCTGGGTA+TGG | + | tig0012590:12844-12863 | None:intergenic | 40.0% | |
| ACCCAAACCCAATGAAAATG+GGG | - | tig0012590:12881-12900 | Msa1352380:intron | 40.0% | |
| ! | TCCCCATTTTCATTGGGTTT+GGG | + | tig0012590:12885-12904 | None:intergenic | 40.0% |
| ! | TTCCCCATTTTCATTGGGTT+TGG | + | tig0012590:12886-12905 | None:intergenic | 40.0% |
| ! | GGGTTTTCCCCATTTTCATT+GGG | + | tig0012590:12891-12910 | None:intergenic | 40.0% |
| AAAACCCGTCAAATTGGGTT+TGG | - | tig0012590:12904-12923 | Msa1352380:intron | 40.0% | |
| ATATCCACTTCGTCTAAGCA+TGG | + | tig0012590:12964-12983 | None:intergenic | 40.0% | |
| ! | GTGTTTGAGAGTGCATTGAT+AGG | - | tig0012590:13172-13191 | Msa1352380:intron | 40.0% |
| CGAACACGGAAAATTTAAGG+AGG | - | tig0012590:13511-13530 | Msa1352380:intron | 40.0% | |
| AAGGGCTATAACATGGAGAA+TGG | - | tig0012590:13540-13559 | Msa1352380:intron | 40.0% | |
| ATGATGAATACGCACATTCC+TGG | - | tig0012590:13606-13625 | Msa1352380:intron | 40.0% | |
| ATTTACTACCCCAAAATGGC+TGG | - | tig0012590:13664-13683 | Msa1352380:intron | 40.0% | |
| TTGCAGCGGAATGGACAATA+AGG | + | tig0012590:6880-6899 | None:intergenic | 45.0% | |
| ! | AATTGGTAGTTGCAGCGGAA+TGG | + | tig0012590:6889-6908 | None:intergenic | 45.0% |
| CAGTAACAATGTACACCCTC+CGG | + | tig0012590:7145-7164 | None:intergenic | 45.0% | |
| ! | GTGGACAAGGACCTTCATTT+TGG | + | tig0012590:7323-7342 | None:intergenic | 45.0% |
| GTCCTTGTCCACATATCTAC+AGG | - | tig0012590:7331-7350 | Msa1352380:CDS | 45.0% | |
| ATGTTATAAGCCCAATCGCG+AGG | + | tig0012590:7749-7768 | None:intergenic | 45.0% | |
| TCCTTGTTCACCCTACAATC+TGG | - | tig0012590:8702-8721 | Msa1352380:intron | 45.0% | |
| CCTTGTTCACCCTACAATCT+GGG | - | tig0012590:8703-8722 | Msa1352380:intron | 45.0% | |
| GAGTCAAATGCTTGACACAG+TGG | - | tig0012590:9267-9286 | Msa1352380:intron | 45.0% | |
| TTTGAATTCGCGTCTTGTCG+CGG | + | tig0012590:9594-9613 | None:intergenic | 45.0% | |
| ! | GTGTTGTTAGTCGTCTTGTG+CGG | + | tig0012590:9619-9638 | None:intergenic | 45.0% |
| CTTCATCCATCGAAGAAGAG+TGG | + | tig0012590:9780-9799 | None:intergenic | 45.0% | |
| CACTCTTCTTCGATGGATGA+AGG | - | tig0012590:9778-9797 | Msa1352380:intron | 45.0% | |
| !!! | CGGCTCTAGTTTTCTAGTGA+GGG | + | tig0012590:9835-9854 | None:intergenic | 45.0% |
| CCTCACTAGAAAACTAGAGC+CGG | - | tig0012590:9833-9852 | Msa1352380:CDS | 45.0% | |
| GAGCTATGTGTCATGGGTAA+AGG | + | tig0012590:9931-9950 | None:intergenic | 45.0% | |
| CCTTAACGAGCTATGTGTCA+TGG | + | tig0012590:9938-9957 | None:intergenic | 45.0% | |
| CCATGACACATAGCTCGTTA+AGG | - | tig0012590:9935-9954 | Msa1352380:CDS | 45.0% | |
| ! | CACAAGCTTAGAGCTTTGAC+CGG | - | tig0012590:9992-10011 | Msa1352380:intron | 45.0% |
| AAGTCAAAGCTCTGCACTAC+CGG | + | tig0012590:10014-10033 | None:intergenic | 45.0% | |
| !! | GCAGAGCTTTGACTTGGTTT+AGG | - | tig0012590:10019-10038 | Msa1352380:intron | 45.0% |
| TATCACTAGTAACAGCCACG+GGG | + | tig0012590:10364-10383 | None:intergenic | 45.0% | |
| GATTGACGACCCATCTCAAA+TGG | + | tig0012590:10465-10484 | None:intergenic | 45.0% | |
| ! | TGGGTCGTCAATCTCTAGAA+AGG | - | tig0012590:10472-10491 | Msa1352380:intron | 45.0% |
| CCTTCAATCCAACCAGGAAA+CGG | + | tig0012590:10867-10886 | None:intergenic | 45.0% | |
| CTTTGACCTTCAATCCAACC+AGG | + | tig0012590:10873-10892 | None:intergenic | 45.0% | |
| CTGGTTGGATTGAAGGTCAA+AGG | - | tig0012590:10871-10890 | Msa1352380:intron | 45.0% | |
| ACAAGCAAAGATCCGTTTCC+TGG | - | tig0012590:10852-10871 | Msa1352380:intron | 45.0% | |
| CCTTCAATCCAACCAGGAAA+CGG | + | tig0012590:10867-10886 | None:intergenic | 45.0% | |
| CTTTGACCTTCAATCCAACC+AGG | + | tig0012590:10873-10892 | None:intergenic | 45.0% | |
| CTGGTTGGATTGAAGGTCAA+AGG | - | tig0012590:10871-10890 | Msa1352380:intron | 45.0% | |
| GAAGCCAATAGTCGTTTCCA+AGG | - | tig0012590:12580-12599 | Msa1352380:intron | 45.0% | |
| TCTAACAAACCTCAAGTGGC+AGG | + | tig0012590:12661-12680 | None:intergenic | 45.0% | |
| TCGGTCTAACAAACCTCAAG+TGG | + | tig0012590:12665-12684 | None:intergenic | 45.0% | |
| TAGGTTTGAGTATGGGTTCG+GGG | - | tig0012590:12791-12810 | Msa1352380:intron | 45.0% | |
| ! | CGGGTTTTCCCCATTTTCAT+TGG | + | tig0012590:12892-12911 | None:intergenic | 45.0% |
| ATGGGGAAAACCCGTCAAAT+TGG | - | tig0012590:12898-12917 | Msa1352380:intron | 45.0% | |
| TGGGGAAAACCCGTCAAATT+GGG | - | tig0012590:12899-12918 | Msa1352380:intron | 45.0% | |
| CGAACCAAACCCAATTTGAC+GGG | + | tig0012590:12911-12930 | None:intergenic | 45.0% | |
| CCGAACCAAACCCAATTTGA+CGG | + | tig0012590:12912-12931 | None:intergenic | 45.0% | |
| ! | CCGTCAAATTGGGTTTGGTT+CGG | - | tig0012590:12909-12928 | Msa1352380:intron | 45.0% |
| ! | CGTCAAATTGGGTTTGGTTC+GGG | - | tig0012590:12910-12929 | Msa1352380:intron | 45.0% |
| !! | AAATTGGGTTTGGTTCGGGT+AGG | - | tig0012590:12914-12933 | Msa1352380:intron | 45.0% |
| GGCAACAAAGGGCTATAACA+TGG | - | tig0012590:13533-13552 | Msa1352380:intron | 45.0% | |
| ATTGCATACTTGACGAGACC+AGG | + | tig0012590:13627-13646 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTATTTTTTTTCT+GGG | + | tig0012590:7364-7383 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTATTTTTTTTC+TGG | + | tig0012590:7365-7384 | None:intergenic | 5.0% |
| !!! | TAGATTATAAATATTTTTTT+TGG | + | tig0012590:8502-8521 | None:intergenic | 5.0% |
| !! | TATATCAAAATTTAAATTAA+GGG | - | tig0012590:11670-11689 | Msa1352380:intron | 5.0% |
| CCCAGATTGTAGGGTGAACA+AGG | + | tig0012590:8706-8725 | None:intergenic | 50.0% | |
| ! | CAACCTAGTTCTCGACCTAG+AGG | - | tig0012590:8748-8767 | Msa1352380:intron | 50.0% |
| AGTCCTCTAGGTCGAGAACT+AGG | + | tig0012590:8754-8773 | None:intergenic | 50.0% | |
| GTGTATGCTTGGGTGTTCGT+AGG | - | tig0012590:8991-9010 | Msa1352380:intron | 50.0% | |
| CACAGTGGATCTCACTAGAG+AGG | - | tig0012590:9282-9301 | Msa1352380:intron | 50.0% | |
| ! | ATCCGGAAGCATGGGCATTT+CGG | + | tig0012590:9493-9512 | None:intergenic | 50.0% |
| !!! | CCGGCTCTAGTTTTCTAGTG+AGG | + | tig0012590:9836-9855 | None:intergenic | 50.0% |
| ! | GGTAGTGCAGAGCTTTGACT+TGG | - | tig0012590:10013-10032 | Msa1352380:intron | 50.0% |
| TTATGTGTGCGGGGAGACTA+AGG | - | tig0012590:10413-10432 | Msa1352380:intron | 50.0% | |
| CCGTTTCCTGGTTGGATTGA+AGG | - | tig0012590:10864-10883 | Msa1352380:intron | 50.0% | |
| GCAAAGATCCGTTTCCTGGT+TGG | - | tig0012590:10856-10875 | Msa1352380:intron | 50.0% | |
| CCGTTTCCTGGTTGGATTGA+AGG | - | tig0012590:10864-10883 | Msa1352380:intron | 50.0% | |
| ! | TCGATATGTCCTGCCACTTG+AGG | - | tig0012590:12649-12668 | Msa1352380:intron | 50.0% |
| TTTGAGTATGGGTTCGGGGT+GGG | - | tig0012590:12795-12814 | Msa1352380:intron | 50.0% | |
| !! | TTGGTTCGGGTAGGTAACCA+CGG | - | tig0012590:12923-12942 | Msa1352380:intron | 50.0% |
| GGCAACAAAACTCATACCCG+TGG | + | tig0012590:12943-12962 | None:intergenic | 50.0% | |
| GTTGCCATGCTTAGACGAAG+TGG | - | tig0012590:12957-12976 | Msa1352380:intron | 50.0% | |
| CACCGAAATGCCCATGCTTC+CGG | - | tig0012590:9488-9507 | Msa1352380:intron | 55.0% | |
| ! | CGTTGCAGATCCGGAAGCAT+GGG | + | tig0012590:9501-9520 | None:intergenic | 55.0% |
| ACGTTGCAGATCCGGAAGCA+TGG | + | tig0012590:9502-9521 | None:intergenic | 55.0% | |
| GGGCATCAACGTTGCAGATC+CGG | + | tig0012590:9510-9529 | None:intergenic | 55.0% | |
| ATTTCACCTTCCCATCCCCG+TGG | - | tig0012590:10346-10365 | Msa1352380:intron | 55.0% | |
| CTAGTAACAGCCACGGGGAT+GGG | + | tig0012590:10359-10378 | None:intergenic | 55.0% | |
| ACTAGTAACAGCCACGGGGA+TGG | + | tig0012590:10360-10379 | None:intergenic | 55.0% | |
| CGGGGAGACTAAGGAAGGAA+AGG | - | tig0012590:10422-10441 | Msa1352380:intron | 55.0% | |
| GTTTGAGTATGGGTTCGGGG+TGG | - | tig0012590:12794-12813 | Msa1352380:intron | 55.0% | |
| CTGGGTATGGGACGAGTAAC+AGG | + | tig0012590:12831-12850 | None:intergenic | 55.0% | |
| ! | TGGTTCGGGTAGGTAACCAC+GGG | - | tig0012590:12924-12943 | Msa1352380:intron | 55.0% |
| TAACAGCCACGGGGATGGGA+AGG | + | tig0012590:10355-10374 | None:intergenic | 60.0% | |
| GTGTGCGGGGAGACTAAGGA+AGG | - | tig0012590:10417-10436 | Msa1352380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012590 | gene | 6858 | 13863 | 6858 | ID=Msa1352380;Name=Msa1352380 |
| tig0012590 | mRNA | 6858 | 13863 | 6858 | ID=Msa1352380-mRNA-1;Parent=Msa1352380;Name=Msa1352380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=2|1|1|1|0.71|0.62|8|210|386 |
| tig0012590 | exon | 6858 | 7221 | 6858 | ID=Msa1352380-mRNA-1:exon:8151;Parent=Msa1352380-mRNA-1 |
| tig0012590 | exon | 7326 | 7453 | 7326 | ID=Msa1352380-mRNA-1:exon:8150;Parent=Msa1352380-mRNA-1 |
| tig0012590 | exon | 8051 | 8320 | 8051 | ID=Msa1352380-mRNA-1:exon:8149;Parent=Msa1352380-mRNA-1 |
| tig0012590 | exon | 8801 | 8882 | 8801 | ID=Msa1352380-mRNA-1:exon:8148;Parent=Msa1352380-mRNA-1 |
| tig0012590 | exon | 9829 | 9990 | 9829 | ID=Msa1352380-mRNA-1:exon:8147;Parent=Msa1352380-mRNA-1 |
| tig0012590 | exon | 10105 | 10309 | 10105 | ID=Msa1352380-mRNA-1:exon:8146;Parent=Msa1352380-mRNA-1 |
| tig0012590 | exon | 13369 | 13469 | 13369 | ID=Msa1352380-mRNA-1:exon:8145;Parent=Msa1352380-mRNA-1 |
| tig0012590 | exon | 13803 | 13863 | 13803 | ID=Msa1352380-mRNA-1:exon:8144;Parent=Msa1352380-mRNA-1 |
| tig0012590 | five_prime_UTR | 13862 | 13863 | 13862 | ID=Msa1352380-mRNA-1:five_prime_utr;Parent=Msa1352380-mRNA-1 |
| tig0012590 | CDS | 13803 | 13861 | 13803 | ID=Msa1352380-mRNA-1:cds;Parent=Msa1352380-mRNA-1 |
| tig0012590 | CDS | 13369 | 13469 | 13369 | ID=Msa1352380-mRNA-1:cds;Parent=Msa1352380-mRNA-1 |
| tig0012590 | CDS | 10105 | 10309 | 10105 | ID=Msa1352380-mRNA-1:cds;Parent=Msa1352380-mRNA-1 |
| tig0012590 | CDS | 9829 | 9990 | 9829 | ID=Msa1352380-mRNA-1:cds;Parent=Msa1352380-mRNA-1 |
| tig0012590 | CDS | 8801 | 8882 | 8801 | ID=Msa1352380-mRNA-1:cds;Parent=Msa1352380-mRNA-1 |
| tig0012590 | CDS | 8051 | 8320 | 8051 | ID=Msa1352380-mRNA-1:cds;Parent=Msa1352380-mRNA-1 |
| tig0012590 | CDS | 7326 | 7453 | 7326 | ID=Msa1352380-mRNA-1:cds;Parent=Msa1352380-mRNA-1 |
| tig0012590 | CDS | 7068 | 7221 | 7068 | ID=Msa1352380-mRNA-1:cds;Parent=Msa1352380-mRNA-1 |
| tig0012590 | three_prime_UTR | 6858 | 7067 | 6858 | ID=Msa1352380-mRNA-1:three_prime_utr;Parent=Msa1352380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
