Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680750 | XP_024636352.2 | 92.746 | 386 | 28 | 0 | 1 | 386 | 110 | 495 | 0.0 | 758 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680750 | sp|Q39152|FACR1_ARATH | 49.871 | 387 | 187 | 4 | 1 | 386 | 110 | 490 | 1.49e-139 | 409 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680750 | G7JJM2 | 92.746 | 386 | 28 | 0 | 1 | 386 | 110 | 495 | 0.0 | 758 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0672520 | Msa0680750 | 0.994950 | 1.196208e-211 | -8.615850e-47 |
Msa0680750 | Msa1352380 | 0.953324 | 3.524574e-111 | -8.615850e-47 |
Msa0680750 | Msa1359280 | 0.810651 | 1.036682e-50 | -8.615850e-47 |
Msa0680750 | Msa1420060 | 0.821346 | 4.238960e-53 | -8.615850e-47 |
Msa0219190 | Msa0680750 | 0.805610 | 1.228331e-49 | -8.615850e-47 |
Msa0413930 | Msa0680750 | 0.810186 | 1.306600e-50 | -8.615850e-47 |
Msa0545840 | Msa0680750 | 0.946819 | 2.224755e-105 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680750 | MtrunA17_Chr4g0026711 | 92.746 | 386 | 28 | 0 | 1 | 386 | 110 | 495 | 0.0 | 758 |
Msa0680750 | MtrunA17_Chr4g0026771 | 72.093 | 387 | 106 | 2 | 1 | 386 | 107 | 492 | 0.0 | 563 |
Msa0680750 | MtrunA17_Chr4g0026691 | 50.653 | 383 | 185 | 2 | 4 | 386 | 113 | 491 | 4.49e-138 | 402 |
Msa0680750 | MtrunA17_Chr2g0321201 | 49.608 | 383 | 188 | 4 | 4 | 386 | 115 | 492 | 3.51e-136 | 398 |
Msa0680750 | MtrunA17_Chr4g0026701 | 48.964 | 386 | 193 | 2 | 1 | 386 | 111 | 492 | 2.71e-135 | 395 |
Msa0680750 | MtrunA17_Chr2g0321181 | 48.303 | 383 | 194 | 2 | 4 | 386 | 113 | 491 | 3.82e-132 | 387 |
Msa0680750 | MtrunA17_Chr5g0419501 | 64.626 | 294 | 49 | 4 | 1 | 294 | 110 | 348 | 5.51e-121 | 354 |
Msa0680750 | MtrunA17_Chr6g0465391 | 48.187 | 386 | 165 | 6 | 1 | 386 | 110 | 460 | 5.95e-120 | 355 |
Msa0680750 | MtrunA17_Chr4g0026911 | 69.730 | 185 | 54 | 2 | 204 | 386 | 3 | 187 | 1.16e-90 | 271 |
Msa0680750 | MtrunA17_Chr1g0176054 | 35.516 | 397 | 230 | 9 | 3 | 386 | 225 | 608 | 7.44e-81 | 259 |
Msa0680750 | MtrunA17_Chr5g0431281 | 63.587 | 184 | 65 | 2 | 204 | 386 | 28 | 210 | 8.97e-76 | 233 |
Msa0680750 | MtrunA17_Chr5g0431251 | 75.781 | 128 | 31 | 0 | 77 | 204 | 3 | 130 | 1.88e-68 | 213 |
Msa0680750 | MtrunA17_Chr5g0419491 | 89.362 | 94 | 10 | 0 | 293 | 386 | 7 | 100 | 9.10e-56 | 178 |
Msa0680750 | MtrunA17_Chr4g0026891 | 68.293 | 123 | 37 | 2 | 1 | 122 | 107 | 228 | 2.36e-51 | 173 |
Msa0680750 | MtrunA17_Chr5g0431261 | 59.341 | 91 | 37 | 0 | 204 | 294 | 3 | 93 | 1.29e-32 | 117 |
Msa0680750 | MtrunA17_Chr4g0026901 | 86.207 | 58 | 8 | 0 | 122 | 179 | 16 | 73 | 9.59e-32 | 115 |
Msa0680750 | MtrunA17_Chr6g0465381 | 49.640 | 139 | 70 | 0 | 138 | 276 | 1 | 139 | 1.15e-31 | 118 |
Msa0680750 | MtrunA17_Chr5g0431271 | 73.134 | 67 | 18 | 0 | 138 | 204 | 1 | 67 | 1.57e-29 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680750 | AT5G22500.1 | 49.871 | 387 | 187 | 4 | 1 | 386 | 110 | 490 | 1.51e-140 | 409 |
Msa0680750 | AT3G44540.1 | 50.904 | 387 | 185 | 4 | 1 | 386 | 110 | 492 | 1.74e-140 | 409 |
Msa0680750 | AT3G44550.2 | 48.586 | 389 | 194 | 2 | 1 | 386 | 1 | 386 | 1.45e-132 | 385 |
Msa0680750 | AT3G44550.1 | 48.586 | 389 | 194 | 2 | 1 | 386 | 110 | 495 | 2.33e-131 | 386 |
Msa0680750 | AT4G33790.2 | 46.214 | 383 | 201 | 4 | 1 | 383 | 1 | 378 | 8.43e-129 | 375 |
Msa0680750 | AT4G33790.1 | 46.214 | 383 | 201 | 4 | 1 | 383 | 114 | 491 | 1.29e-127 | 376 |
Msa0680750 | AT3G44560.1 | 48.586 | 389 | 194 | 2 | 1 | 386 | 110 | 495 | 6.24e-125 | 370 |
Msa0680750 | AT5G22420.4 | 46.113 | 373 | 194 | 6 | 1 | 373 | 1 | 366 | 3.89e-119 | 350 |
Msa0680750 | AT5G22420.1 | 44.142 | 367 | 198 | 6 | 7 | 373 | 43 | 402 | 3.02e-110 | 329 |
Msa0680750 | AT5G22420.3 | 45.070 | 355 | 188 | 6 | 19 | 373 | 3 | 350 | 6.06e-109 | 324 |
Msa0680750 | AT5G22420.6 | 45.070 | 355 | 188 | 6 | 19 | 373 | 3 | 350 | 6.06e-109 | 324 |
Msa0680750 | AT5G22500.2 | 50.680 | 294 | 139 | 3 | 1 | 294 | 110 | 397 | 4.35e-108 | 323 |
Msa0680750 | AT3G44560.3 | 48.961 | 337 | 169 | 1 | 1 | 337 | 110 | 443 | 1.50e-106 | 321 |
Msa0680750 | AT3G44560.2 | 50.169 | 295 | 144 | 1 | 1 | 295 | 110 | 401 | 1.79e-95 | 291 |
Msa0680750 | AT5G22420.5 | 44.062 | 320 | 172 | 6 | 54 | 373 | 3 | 315 | 8.77e-92 | 279 |
Msa0680750 | AT5G22420.2 | 43.771 | 297 | 164 | 3 | 77 | 373 | 3 | 296 | 6.56e-88 | 268 |
Msa0680750 | AT5G22420.7 | 43.771 | 297 | 164 | 3 | 77 | 373 | 3 | 296 | 6.56e-88 | 268 |
Msa0680750 | AT3G11980.1 | 37.940 | 398 | 220 | 10 | 3 | 386 | 229 | 613 | 2.79e-80 | 258 |
Msa0680750 | AT3G44540.2 | 55.825 | 206 | 87 | 2 | 1 | 206 | 110 | 311 | 7.09e-80 | 248 |
Msa0680750 | AT3G44540.3 | 55.825 | 206 | 87 | 2 | 1 | 206 | 110 | 311 | 7.09e-80 | 248 |
Msa0680750 | AT3G56700.2 | 33.681 | 383 | 226 | 8 | 3 | 382 | 182 | 539 | 2.88e-64 | 214 |
Msa0680750 | AT3G56700.1 | 31.593 | 383 | 213 | 9 | 3 | 382 | 182 | 518 | 3.80e-53 | 184 |
Find 86 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGAAATTTCCAGCCATTT+TGG | 0.174184 | 4_4:-39974694 | None:intergenic |
TATATTCAAGGTCTTAAATT+TGG | 0.180226 | 4_4:+39974278 | Msa0680750:intron |
ACACTTCATATTTGGATAAT+AGG | 0.192277 | 4_4:-39974770 | None:intergenic |
ATGTTTCTACACTTCATATT+TGG | 0.201055 | 4_4:-39974778 | None:intergenic |
GTGGACAAGGACCTTCATTT+TGG | 0.201357 | 4_4:-39968413 | None:intergenic |
TTGACCCGATTAGCATTAAT+TGG | 0.205325 | 4_4:+39974594 | Msa0680750:CDS |
TAATCACCTTTCATCAAAAT+TGG | 0.225214 | 4_4:-39967989 | None:intergenic |
ATACGAACACGGAAAATTTA+AGG | 0.283879 | 4_4:+39974528 | Msa0680750:CDS |
TGTTTCAAAAGTATTTAAAA+AGG | 0.290161 | 4_4:+39974822 | Msa0680750:three_prime_UTR |
TGTTTGAAAAGTATTCAAAA+TGG | 0.294267 | 4_4:+39974728 | Msa0680750:three_prime_UTR |
CTGGGATTACCAAGAAAATA+TGG | 0.306717 | 4_4:-39972902 | None:intergenic |
TTTGTCCAATTAATGCTAAT+CGG | 0.324881 | 4_4:-39974599 | None:intergenic |
AATTATTTACTACCCCAAAA+TGG | 0.331678 | 4_4:+39974680 | Msa0680750:three_prime_UTR |
TATGTAGATACCTGCAGATT+TGG | 0.336833 | 4_4:+39973414 | Msa0680750:intron |
ATTCCCTTGGAAACGACTAT+TGG | 0.353883 | 4_4:-39973604 | None:intergenic |
CCGTTTCCTGGTTGGATTGA+AGG | 0.357677 | 4_4:+39972002 | Msa0680750:CDS |
ATGTCTTAAACATCGCAAAA+AGG | 0.363896 | 4_4:+39968386 | Msa0680750:CDS |
ACAAGCAAAGATCCGTTTCC+TGG | 0.377539 | 4_4:+39971990 | Msa0680750:CDS |
TTGGCTTCCCATCTTTGTTT+AGG | 0.410010 | 4_4:-39973585 | None:intergenic |
GGGAATTGCCTTGAAAAGTA+TGG | 0.413041 | 4_4:+39973621 | Msa0680750:CDS |
TACGATATCTAAAATTGTCC+TGG | 0.424094 | 4_4:-39972921 | None:intergenic |
TTTGTGAATACATATGTGTT+TGG | 0.427147 | 4_4:-39971888 | None:intergenic |
AGTTATCATCATAAACATCT+TGG | 0.434245 | 4_4:-39974326 | None:intergenic |
TAATTCTAGCTTATGTGTGC+GGG | 0.446461 | 4_4:+39971541 | Msa0680750:intron |
ATGATGAATACGCACATTCC+TGG | 0.447431 | 4_4:+39974626 | Msa0680750:CDS |
ACACACAGAAATGAATTTGC+TGG | 0.449134 | 4_4:+39971650 | Msa0680750:CDS |
TTAGAGCAAATTTGCATGGT+TGG | 0.450318 | 4_4:+39971865 | Msa0680750:intron |
CATAAACATCTTGGAAGGAA+TGG | 0.454109 | 4_4:-39974317 | None:intergenic |
ACTCCTTGCCTAAACAAAGA+TGG | 0.462744 | 4_4:+39973577 | Msa0680750:CDS |
TGATATGTGCCTATGGTAAA+GGG | 0.463507 | 4_4:+39972873 | Msa0680750:CDS |
ATTTACTACCCCAAAATGGC+TGG | 0.464914 | 4_4:+39974684 | Msa0680750:three_prime_UTR |
TTCCCATCTTTGTTTAGGCA+AGG | 0.468942 | 4_4:-39973580 | None:intergenic |
TTGTCCAATTAATGCTAATC+GGG | 0.470692 | 4_4:-39974598 | None:intergenic |
GATTGACGACCCATCTCAAA+TGG | 0.474980 | 4_4:-39971600 | None:intergenic |
ATGATATGTGCCTATGGTAA+AGG | 0.478427 | 4_4:+39972872 | Msa0680750:CDS |
TTATGTGTGCGGGGAGACTA+AGG | 0.481843 | 4_4:+39971551 | Msa0680750:CDS |
CTGGTTGGATTGAAGGTCAA+AGG | 0.485153 | 4_4:+39972009 | Msa0680750:CDS |
CAAGAGAAACCATTTGAGAT+GGG | 0.491438 | 4_4:+39971591 | Msa0680750:CDS |
TCAAGAGAAACCATTTGAGA+TGG | 0.493054 | 4_4:+39971590 | Msa0680750:CDS |
CTCCTTGCCTAAACAAAGAT+GGG | 0.493790 | 4_4:+39973578 | Msa0680750:CDS |
GTCCTTGTCCACATATCTAC+AGG | 0.498156 | 4_4:+39968424 | Msa0680750:CDS |
CTACAGATTTGACATCTCAA+TGG | 0.499005 | 4_4:+39968339 | Msa0680750:intron |
TCAATGGGTGTTAATACAAT+GGG | 0.499396 | 4_4:+39968355 | Msa0680750:CDS |
CTTGTACTAGTTACCATCGT+TGG | 0.503449 | 4_4:-39971972 | None:intergenic |
GCAAAGATCCGTTTCCTGGT+TGG | 0.504628 | 4_4:+39971994 | Msa0680750:CDS |
TATGTATTCACAAAAGCAAT+GGG | 0.505601 | 4_4:+39971897 | Msa0680750:CDS |
CTCAATGGGTGTTAATACAA+TGG | 0.505733 | 4_4:+39968354 | Msa0680750:CDS |
AAGGGCTATAACATGGAGAA+TGG | 0.506365 | 4_4:+39974560 | Msa0680750:CDS |
TTGCAGCGGAATGGACAATA+AGG | 0.506628 | 4_4:-39967963 | None:intergenic |
TACAGATTTGACATCTCAAT+GGG | 0.511926 | 4_4:+39968340 | Msa0680750:intron |
TGGCAATTTCCCTTTACCAT+AGG | 0.514404 | 4_4:-39972882 | None:intergenic |
AAATTTAAGGAGGGCAACAA+AGG | 0.516552 | 4_4:+39974541 | Msa0680750:CDS |
AATTGGTAGTTGCAGCGGAA+TGG | 0.527290 | 4_4:-39967972 | None:intergenic |
ATCAAAATTGGTAGTTGCAG+CGG | 0.535053 | 4_4:-39967977 | None:intergenic |
CCTTCAATCCAACCAGGAAA+CGG | 0.537673 | 4_4:-39972002 | None:intergenic |
ATTGCATACTTGACGAGACC+AGG | 0.540387 | 4_4:-39974644 | None:intergenic |
GTTGGACGTATAATGATCAA+TGG | 0.544672 | 4_4:-39971954 | None:intergenic |
TTAATTCTAGCTTATGTGTG+CGG | 0.546785 | 4_4:+39971540 | Msa0680750:intron |
TCGATATGTCCTGCCACTTG+AGG | 0.547266 | 4_4:+39973669 | Msa0680750:CDS |
AAAATTAGAGCAAATTTGCA+TGG | 0.552835 | 4_4:+39971861 | Msa0680750:intron |
GATAGTATGATATGTGCCTA+TGG | 0.564664 | 4_4:+39972866 | Msa0680750:CDS |
ACGATATCTAAAATTGTCCT+GGG | 0.565879 | 4_4:-39972920 | None:intergenic |
TGGGTCGTCAATCTCTAGAA+AGG | 0.568466 | 4_4:+39971610 | Msa0680750:CDS |
TCTAACAAACCTCAAGTGGC+AGG | 0.578523 | 4_4:-39973678 | None:intergenic |
GATACTTACCTGTAGATATG+TGG | 0.578543 | 4_4:-39968432 | None:intergenic |
AATTTAAGGAGGGCAACAAA+GGG | 0.581635 | 4_4:+39974542 | Msa0680750:CDS |
GGCAACAAAGGGCTATAACA+TGG | 0.581652 | 4_4:+39974553 | Msa0680750:CDS |
CAATTGATGACCAAATCTGC+AGG | 0.583208 | 4_4:-39973424 | None:intergenic |
ATCATCATAAACATCTTGGA+AGG | 0.583944 | 4_4:-39974322 | None:intergenic |
ATATGTATTCACAAAAGCAA+TGG | 0.587895 | 4_4:+39971896 | Msa0680750:CDS |
CTTTGACCTTCAATCCAACC+AGG | 0.590282 | 4_4:-39972008 | None:intergenic |
GAAGCCAATAGTCGTTTCCA+AGG | 0.596362 | 4_4:+39973600 | Msa0680750:CDS |
CGGGGAGACTAAGGAAGGAA+AGG | 0.602288 | 4_4:+39971560 | Msa0680750:CDS |
TCGGTCTAACAAACCTCAAG+TGG | 0.615541 | 4_4:-39973682 | None:intergenic |
AATATTGATGGGAAATGCTG+TGG | 0.630210 | 4_4:-39973546 | None:intergenic |
TGAATTACAAGCAATGAATG+TGG | 0.639826 | 4_4:+39971686 | Msa0680750:CDS |
CGAACACGGAAAATTTAAGG+AGG | 0.646321 | 4_4:+39974531 | Msa0680750:CDS |
TAACTACAAGAAAATACGAA+TGG | 0.647002 | 4_4:+39974344 | Msa0680750:CDS |
TTCTTAATGAAGAAGAAACA+TGG | 0.655254 | 4_4:-39973501 | None:intergenic |
AATTCTAGCTTATGTGTGCG+GGG | 0.658485 | 4_4:+39971542 | Msa0680750:intron |
TAGCTTTGATGATACGAACA+CGG | 0.658725 | 4_4:+39974517 | Msa0680750:intron |
GTGTGCGGGGAGACTAAGGA+AGG | 0.662909 | 4_4:+39971555 | Msa0680750:CDS |
GATCATTATACGTCCAACGA+TGG | 0.666558 | 4_4:+39971959 | Msa0680750:CDS |
TACCTGTAGATATGTGGACA+AGG | 0.671648 | 4_4:-39968426 | None:intergenic |
AAGCCAATAGTCGTTTCCAA+GGG | 0.679107 | 4_4:+39973601 | Msa0680750:CDS |
GAACACGGAAAATTTAAGGA+GGG | 0.691082 | 4_4:+39974532 | Msa0680750:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATTATTTTTAAATTAA+TGG | - | chr4_4:39969538-39969557 | None:intergenic | 0.0% |
!!! | TAATTATATTTTATATATAA+TGG | + | chr4_4:39972804-39972823 | Msa0680750:intron | 0.0% |
!!! | TTTTTTTTTTTTTTGACAAA+AGG | - | chr4_4:39968881-39968900 | None:intergenic | 10.0% |
!! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr4_4:39969308-39969327 | Msa0680750:intron | 10.0% |
!!! | ATAAGTAAATTTTTTTTTGT+AGG | + | chr4_4:39969369-39969388 | Msa0680750:intron | 10.0% |
!!! | TAAGTAAATTTTTTTTTGTA+GGG | + | chr4_4:39969370-39969389 | Msa0680750:intron | 10.0% |
!!! | TTTTAAATTAATGGTAAAAT+TGG | - | chr4_4:39969529-39969548 | None:intergenic | 10.0% |
!! | TTATGCTTATATATTAAAAT+AGG | + | chr4_4:39971415-39971434 | Msa0680750:intron | 10.0% |
!! | TAACAAAAAAAATTAAAAAC+TGG | + | chr4_4:39971450-39971469 | Msa0680750:intron | 10.0% |
!!! | TTTTTAATAAAAGATTGATA+TGG | + | chr4_4:39972127-39972146 | Msa0680750:intron | 10.0% |
!! | CATTTATGAATAATTTATTT+GGG | - | chr4_4:39972226-39972245 | None:intergenic | 10.0% |
!! | ACATTTATGAATAATTTATT+TGG | - | chr4_4:39972227-39972246 | None:intergenic | 10.0% |
!! | CTATATCAAAATTTAAATTA+AGG | + | chr4_4:39972689-39972708 | Msa0680750:intron | 10.0% |
!!! | GATATTTTCATAAAAAATAA+TGG | - | chr4_4:39973152-39973171 | None:intergenic | 10.0% |
!!! | TTAATCCTTTTAATATTTTT+TGG | + | chr4_4:39974253-39974272 | Msa0680750:intron | 10.0% |
!!! | ATGAAAATATGAATTATTTT+TGG | + | chr4_4:39974491-39974510 | Msa0680750:intron | 10.0% |
!!! | TAAGCAAAAATTCATATTTT+AGG | - | chr4_4:39968199-39968218 | None:intergenic | 15.0% |
!!! | ATGATCAATTTAATTTAACA+TGG | - | chr4_4:39968292-39968311 | None:intergenic | 15.0% |
!!! | TAATTTTTTTTCACAAGTAT+AGG | - | chr4_4:39968608-39968627 | None:intergenic | 15.0% |
!! | TACTTCTATATTATTTGTTT+CGG | - | chr4_4:39968637-39968656 | None:intergenic | 15.0% |
!! | AAAGCTATTAAAATTAAGTA+AGG | - | chr4_4:39969399-39969418 | None:intergenic | 15.0% |
!! | AAGCATAAATTAAACAAATT+TGG | - | chr4_4:39969059-39969078 | None:intergenic | 15.0% |
!!! | AAATTTTTGCGATATTTTTT+CGG | - | chr4_4:39969143-39969162 | None:intergenic | 15.0% |
!! | AAAGCTATTAAAATTAAGTA+AGG | + | chr4_4:39969399-39969418 | Msa0680750:intron | 15.0% |
!! | TAGATATGTAAGAATAAAAT+TGG | - | chr4_4:39971322-39971341 | None:intergenic | 15.0% |
!! | AAAAAAAATTAAAAACTGGA+AGG | + | chr4_4:39971454-39971473 | Msa0680750:intron | 15.0% |
!! | ACTGTATAAAATAAAAAGTA+AGG | - | chr4_4:39971790-39971809 | None:intergenic | 15.0% |
!!! | TTATTTAAGAGTTTTAAACT+TGG | - | chr4_4:39972294-39972313 | None:intergenic | 15.0% |
!! | AACTCTTAAATAATGTTATT+AGG | + | chr4_4:39972301-39972320 | Msa0680750:intron | 15.0% |
!! | ACTCTTAAATAATGTTATTA+GGG | + | chr4_4:39972302-39972321 | Msa0680750:intron | 15.0% |
!!! | ATTTTTTTTGATAGAAATGA+GGG | - | chr4_4:39972367-39972386 | None:intergenic | 15.0% |
!!! | AATTTTTTTTGATAGAAATG+AGG | - | chr4_4:39972368-39972387 | None:intergenic | 15.0% |
!! | AATATATTAAAGATAGTATG+AGG | + | chr4_4:39972544-39972563 | Msa0680750:intron | 15.0% |
!! | CTTGATAAAAAAAAAATATG+AGG | + | chr4_4:39972621-39972640 | Msa0680750:intron | 15.0% |
!!! | ACACAAAATATTATTTTGTT+GGG | + | chr4_4:39972657-39972676 | Msa0680750:intron | 15.0% |
!! | ATATAATTAGCAACTAAAAT+AGG | - | chr4_4:39972793-39972812 | None:intergenic | 15.0% |
!! | CTTTAATCCAAAATTTAAAT+AGG | - | chr4_4:39973081-39973100 | None:intergenic | 15.0% |
!! | GCAAGTTATTTAAAAATTTA+AGG | - | chr4_4:39973280-39973299 | None:intergenic | 15.0% |
!!! | ATAAAGTAATTTTCTACATT+CGG | + | chr4_4:39973786-39973805 | Msa0680750:intron | 15.0% |
!! | TAGTGAATTAAATAATATGT+TGG | - | chr4_4:39974063-39974082 | None:intergenic | 15.0% |
!! | AAAAGGATTAATTAGTAAAA+GGG | - | chr4_4:39974244-39974263 | None:intergenic | 15.0% |
!! | TAAAAGGATTAATTAGTAAA+AGG | - | chr4_4:39974245-39974264 | None:intergenic | 15.0% |
!! | ATATGCCAAAAAATATTAAA+AGG | - | chr4_4:39974261-39974280 | None:intergenic | 15.0% |
!!! | AATTCATATTTTCATGAATA+TGG | - | chr4_4:39974486-39974505 | None:intergenic | 15.0% |
!!! | TGTTTCAAAAGTATTTAAAA+AGG | + | chr4_4:39974822-39974841 | Msa0680750:three_prime_UTR | 15.0% |
!! | CATTCAATAAATGATGTATA+CGG | + | chr4_4:39968135-39968154 | Msa0680750:intron | 20.0% |
!!! | TTTTTGCTTATAATTGTAAC+CGG | + | chr4_4:39968209-39968228 | Msa0680750:intron | 20.0% |
!!! | GTTATTTTTTTTTTCTGTCA+AGG | - | chr4_4:39968514-39968533 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTGACAAAAGG+TGG | - | chr4_4:39968878-39968897 | None:intergenic | 20.0% |
!! | TTAACCCAAAAAACATTATA+AGG | - | chr4_4:39968920-39968939 | None:intergenic | 20.0% |
!!! | TTTTGGGTTAATTATGTTTT+TGG | + | chr4_4:39968929-39968948 | Msa0680750:intron | 20.0% |
!!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr4_4:39969089-39969108 | Msa0680750:intron | 20.0% |
!!! | TAACCAAAATTTATTTTAGC+AGG | + | chr4_4:39969336-39969355 | Msa0680750:intron | 20.0% |
!!! | AACCAAAATTTATTTTAGCA+GGG | + | chr4_4:39969337-39969356 | Msa0680750:intron | 20.0% |
!!! | TTTCAGCTAATTTATTTTGA+AGG | + | chr4_4:39969680-39969699 | Msa0680750:intron | 20.0% |
!! | AGTCAAAAGAAACATATATA+AGG | - | chr4_4:39970002-39970021 | None:intergenic | 20.0% |
!!! | ATCCAATTTTGATTAAAGAA+GGG | - | chr4_4:39970150-39970169 | None:intergenic | 20.0% |
!!! | AATCCAATTTTGATTAAAGA+AGG | - | chr4_4:39970151-39970170 | None:intergenic | 20.0% |
!! | AACATATATTTCTTCAACAA+CGG | - | chr4_4:39970202-39970221 | None:intergenic | 20.0% |
!! | TTCATCAATGAGAATAATTA+AGG | + | chr4_4:39970287-39970306 | Msa0680750:intron | 20.0% |
!! | ACAAATTCAATCAATGATTT+GGG | - | chr4_4:39970655-39970674 | None:intergenic | 20.0% |
!! | TACAAATTCAATCAATGATT+TGG | - | chr4_4:39970656-39970675 | None:intergenic | 20.0% |
!! | TTTCTTTCAATCTAAATAAG+TGG | - | chr4_4:39970830-39970849 | None:intergenic | 20.0% |
!! | TATTTAGATTGAAAGAAAAG+AGG | + | chr4_4:39970832-39970851 | Msa0680750:intron | 20.0% |
!! | TACTCTATTTATGTATTGTT+CGG | - | chr4_4:39971388-39971407 | None:intergenic | 20.0% |
!! | TGCTTATATATTAAAATAGG+AGG | + | chr4_4:39971418-39971437 | Msa0680750:intron | 20.0% |
!! | GCTTATATATTAAAATAGGA+GGG | + | chr4_4:39971419-39971438 | Msa0680750:intron | 20.0% |
!! | TGAAAAATTATGGAATTGAA+AGG | + | chr4_4:39971733-39971752 | Msa0680750:CDS | 20.0% |
!! | AGTAAGGAAAAAAATAAGTA+TGG | - | chr4_4:39971774-39971793 | None:intergenic | 20.0% |
!!! | AGTAACATCTTTTTTTATAG+AGG | - | chr4_4:39972200-39972219 | None:intergenic | 20.0% |
!!! | CAAATACATTGTCTTTTTTT+TGG | + | chr4_4:39972335-39972354 | Msa0680750:intron | 20.0% |
!!! | TTTTTTTTTGTCAAATAGTC+TGG | + | chr4_4:39972395-39972414 | Msa0680750:intron | 20.0% |
!! | AGCAATTAAATTAAAAACAC+AGG | - | chr4_4:39972603-39972622 | None:intergenic | 20.0% |
!!! | GACACAAAATATTATTTTGT+TGG | + | chr4_4:39972656-39972675 | Msa0680750:intron | 20.0% |
!! | CAAAGAGTGATAAAAAAAAA+AGG | - | chr4_4:39972993-39973012 | None:intergenic | 20.0% |
!!! | CTTTTTTTTTTATCACTCTT+TGG | + | chr4_4:39972991-39973010 | Msa0680750:intron | 20.0% |
!! | AAAGAAAAATGAACTATCAA+AGG | - | chr4_4:39973023-39973042 | None:intergenic | 20.0% |
!!! | ATTGAGACCTATTTAAATTT+TGG | + | chr4_4:39973071-39973090 | Msa0680750:intron | 20.0% |
!!! | AGTTTTCATGAAATATTGAT+GGG | - | chr4_4:39973560-39973579 | None:intergenic | 20.0% |
!! | GTTGCTTCTTTAAATATTAA+TGG | + | chr4_4:39973713-39973732 | Msa0680750:intron | 20.0% |
!!! | TAAAGTAATTTTCTACATTC+GGG | + | chr4_4:39973787-39973806 | Msa0680750:intron | 20.0% |
!!! | TATTTTTTGGCATATATTCA+AGG | + | chr4_4:39974266-39974285 | Msa0680750:intron | 20.0% |
!! | TATATTCAAGGTCTTAAATT+TGG | + | chr4_4:39974278-39974297 | Msa0680750:intron | 20.0% |
!! | TAACATCTAGTAAATAGAAA+AGG | - | chr4_4:39974435-39974454 | None:intergenic | 20.0% |
!!! | TGTTTGAAAAGTATTCAAAA+TGG | + | chr4_4:39974728-39974747 | Msa0680750:three_prime_UTR | 20.0% |
! | TAATCACCTTTCATCAAAAT+TGG | - | chr4_4:39967992-39968011 | None:intergenic | 25.0% |
! | GAAAGGTGATTAAAGAATTA+AGG | + | chr4_4:39968000-39968019 | Msa0680750:intron | 25.0% |
!!! | CTCGTTTTGAAAAAAAAACA+AGG | - | chr4_4:39968041-39968060 | None:intergenic | 25.0% |
! | TATAATATATGCAAGGTTTG+AGG | - | chr4_4:39968071-39968090 | None:intergenic | 25.0% |
!!! | TACCACCTTATAATGTTTTT+TGG | + | chr4_4:39968912-39968931 | Msa0680750:intron | 25.0% |
!!! | ACCACCTTATAATGTTTTTT+GGG | + | chr4_4:39968913-39968932 | Msa0680750:intron | 25.0% |
! | AAACAAATTTGGATTGAGTA+AGG | - | chr4_4:39969048-39969067 | None:intergenic | 25.0% |
! | GTGTTAAGAACGTTATTAAA+AGG | + | chr4_4:39969113-39969132 | Msa0680750:intron | 25.0% |
! | TTTAGTAAATGAACCTTTCA+TGG | + | chr4_4:39969258-39969277 | Msa0680750:intron | 25.0% |
!! | TTAGAAGGTCACAATTTTAT+AGG | + | chr4_4:39969429-39969448 | Msa0680750:intron | 25.0% |
!! | TAGAAGGTCACAATTTTATA+GGG | + | chr4_4:39969430-39969449 | Msa0680750:intron | 25.0% |
!!! | ACATGGGTTAAATATGTTTT+TGG | - | chr4_4:39969457-39969476 | None:intergenic | 25.0% |
!! | GTAACTTGTCAAAAAAACAT+GGG | - | chr4_4:39969473-39969492 | None:intergenic | 25.0% |
!! | AGTAACTTGTCAAAAAAACA+TGG | - | chr4_4:39969474-39969493 | None:intergenic | 25.0% |
!! | TAATCTAGCTCAAAACTAAA+AGG | + | chr4_4:39969630-39969649 | Msa0680750:intron | 25.0% |
! | GTTAATAAAGAACAAGTTTG+TGG | - | chr4_4:39969660-39969679 | None:intergenic | 25.0% |
! | TACCCTTCTTTAATCAAAAT+TGG | + | chr4_4:39970145-39970164 | Msa0680750:intron | 25.0% |
! | AGGAAAGTTTATTCTAACTT+TGG | - | chr4_4:39970328-39970347 | None:intergenic | 25.0% |
! | AATGACTATTATCTCAAAGA+AGG | - | chr4_4:39970348-39970367 | None:intergenic | 25.0% |
! | AAACATCGTTAAAAACGTAA+AGG | + | chr4_4:39970506-39970525 | Msa0680750:intron | 25.0% |
! | ACGAAATCACAAAAATACAA+AGG | + | chr4_4:39970781-39970800 | Msa0680750:intron | 25.0% |
! | CGAAATCACAAAAATACAAA+GGG | + | chr4_4:39970782-39970801 | Msa0680750:intron | 25.0% |
! | AAAATAAATTCAGTTACAGC+CGG | - | chr4_4:39970980-39970999 | None:intergenic | 25.0% |
! | AAAACTTTGCATCAAGATTA+AGG | - | chr4_4:39971032-39971051 | None:intergenic | 25.0% |
! | TGTGCAGAAAATATAAGTAT+AGG | - | chr4_4:39971206-39971225 | None:intergenic | 25.0% |
! | AAGTATGCGATGAAAAATTA+TGG | + | chr4_4:39971723-39971742 | Msa0680750:CDS | 25.0% |
! | AAAATTAGAGCAAATTTGCA+TGG | + | chr4_4:39971861-39971880 | Msa0680750:intron | 25.0% |
! | TTTGTGAATACATATGTGTT+TGG | - | chr4_4:39971891-39971910 | None:intergenic | 25.0% |
! | ATATGTATTCACAAAAGCAA+TGG | + | chr4_4:39971896-39971915 | Msa0680750:CDS | 25.0% |
! | TATGTATTCACAAAAGCAAT+GGG | + | chr4_4:39971897-39971916 | Msa0680750:CDS | 25.0% |
! | AAAAGAAAACATGAACATGA+TGG | - | chr4_4:39972105-39972124 | None:intergenic | 25.0% |
! | AATGTTCAATACTTTCTTAG+AGG | + | chr4_4:39972242-39972261 | Msa0680750:intron | 25.0% |
!! | AATAATGTTATTAGGGTACT+TGG | + | chr4_4:39972309-39972328 | Msa0680750:intron | 25.0% |
! | CTTCATTTATTCATCTTAAG+AGG | - | chr4_4:39972435-39972454 | None:intergenic | 25.0% |
!! | GAGTTTGAATTCTTTTTATG+TGG | + | chr4_4:39972566-39972585 | Msa0680750:intron | 25.0% |
!! | ATATGCACTAGTTATTTCAA+CGG | + | chr4_4:39973345-39973364 | Msa0680750:intron | 25.0% |
!! | ACATGGTAGATGAAATTTTT+AGG | - | chr4_4:39973487-39973506 | None:intergenic | 25.0% |
! | TTCTTAATGAAGAAGAAACA+TGG | - | chr4_4:39973504-39973523 | None:intergenic | 25.0% |
!! | GAGTTTTCATGAAATATTGA+TGG | - | chr4_4:39973561-39973580 | None:intergenic | 25.0% |
! | AAAGAAGCAACTAAATCAAT+CGG | - | chr4_4:39973704-39973723 | None:intergenic | 25.0% |
!! | AAGAAAGTTCATTGGTAATT+TGG | - | chr4_4:39974029-39974048 | None:intergenic | 25.0% |
! | CTGTAAAAAAGAAAGTTCAT+TGG | - | chr4_4:39974037-39974056 | None:intergenic | 25.0% |
!!! | TTCAACACATATTTTCTAGT+TGG | + | chr4_4:39974085-39974104 | Msa0680750:intron | 25.0% |
! | TGTTTCTCACTAAATTTATG+TGG | + | chr4_4:39974120-39974139 | Msa0680750:intron | 25.0% |
!!! | TCTCAAACACACATTTTAAT+TGG | - | chr4_4:39974182-39974201 | None:intergenic | 25.0% |
! | AGTTATCATCATAAACATCT+TGG | - | chr4_4:39974329-39974348 | None:intergenic | 25.0% |
! | TAACTACAAGAAAATACGAA+TGG | + | chr4_4:39974344-39974363 | Msa0680750:CDS | 25.0% |
! | ATGAATATGGAGAAGAAAAA+TGG | - | chr4_4:39974473-39974492 | None:intergenic | 25.0% |
! | TTTGTCCAATTAATGCTAAT+CGG | - | chr4_4:39974602-39974621 | None:intergenic | 25.0% |
! | AATTATTTACTACCCCAAAA+TGG | + | chr4_4:39974680-39974699 | Msa0680750:three_prime_UTR | 25.0% |
! | ACACTTCATATTTGGATAAT+AGG | - | chr4_4:39974773-39974792 | None:intergenic | 25.0% |
!! | ATGTTTCTACACTTCATATT+TGG | - | chr4_4:39974781-39974800 | None:intergenic | 25.0% |
!! | CAACTACCAATTTTGATGAA+AGG | + | chr4_4:39967983-39968002 | Msa0680750:CDS | 30.0% |
! | GAGAGTGTATAATATATGCA+AGG | - | chr4_4:39968078-39968097 | None:intergenic | 30.0% |
TGCATATATTATACACTCTC+TGG | + | chr4_4:39968078-39968097 | Msa0680750:intron | 30.0% | |
TACAGATTTGACATCTCAAT+GGG | + | chr4_4:39968340-39968359 | Msa0680750:intron | 30.0% | |
TCAATGGGTGTTAATACAAT+GGG | + | chr4_4:39968355-39968374 | Msa0680750:CDS | 30.0% | |
ATGTCTTAAACATCGCAAAA+AGG | + | chr4_4:39968386-39968405 | Msa0680750:CDS | 30.0% | |
! | TTTTTCACAAGTATAGGACA+AGG | - | chr4_4:39968602-39968621 | None:intergenic | 30.0% |
ACCCAAAAAACATTATAAGG+TGG | - | chr4_4:39968917-39968936 | None:intergenic | 30.0% | |
AAGTAAGGACTAAACTTACA+AGG | - | chr4_4:39968972-39968991 | None:intergenic | 30.0% | |
!!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr4_4:39969016-39969035 | None:intergenic | 30.0% |
!!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr4_4:39969017-39969036 | None:intergenic | 30.0% |
!!! | TTTTTGCGATATTTTTTCGG+AGG | - | chr4_4:39969140-39969159 | None:intergenic | 30.0% |
! | GTCCCTGCTAAAATAAATTT+TGG | - | chr4_4:39969342-39969361 | None:intergenic | 30.0% |
AAGTAAGGACTAAACTTAGA+AGG | + | chr4_4:39969414-39969433 | Msa0680750:intron | 30.0% | |
TTTGAAGGTGAGAAAAACAT+AGG | + | chr4_4:39969695-39969714 | Msa0680750:intron | 30.0% | |
GAACAAGGATAAACTATATG+CGG | - | chr4_4:39969806-39969825 | None:intergenic | 30.0% | |
TATTGTAATCCCAGATTGTA+GGG | - | chr4_4:39969830-39969849 | None:intergenic | 30.0% | |
TTATTGTAATCCCAGATTGT+AGG | - | chr4_4:39969831-39969850 | None:intergenic | 30.0% | |
TAAATCTCTGCATTGAGATT+AGG | - | chr4_4:39969893-39969912 | None:intergenic | 30.0% | |
ATAGTGTTTGCACAAATTGT+AGG | + | chr4_4:39969934-39969953 | Msa0680750:intron | 30.0% | |
TGAATGTTGAGATATCTTAG+AGG | + | chr4_4:39970236-39970255 | Msa0680750:intron | 30.0% | |
GTTTATTCTAACTTTGGCAA+GGG | - | chr4_4:39970322-39970341 | None:intergenic | 30.0% | |
AGTTTATTCTAACTTTGGCA+AGG | - | chr4_4:39970323-39970342 | None:intergenic | 30.0% | |
GTCGTTGTATGATATTAACT+TGG | - | chr4_4:39970559-39970578 | None:intergenic | 30.0% | |
AAGAGGAAAAAAAGATGTAG+AGG | + | chr4_4:39970849-39970868 | Msa0680750:intron | 30.0% | |
AGAGGAAAAAAAGATGTAGA+GGG | + | chr4_4:39970850-39970869 | Msa0680750:intron | 30.0% | |
AAGAAAGTTTAGAGAGAGAT+TGG | + | chr4_4:39970929-39970948 | Msa0680750:intron | 30.0% | |
ATCAAGATTAAGGTCAATTG+AGG | - | chr4_4:39971022-39971041 | None:intergenic | 30.0% | |
TTAAGAGCTTTCAAACACTT+AGG | + | chr4_4:39971083-39971102 | Msa0680750:intron | 30.0% | |
TAAGAGCTTTCAAACACTTA+GGG | + | chr4_4:39971084-39971103 | Msa0680750:intron | 30.0% | |
AAGCATGATTGAGAACAATT+AGG | - | chr4_4:39971251-39971270 | None:intergenic | 30.0% | |
!! | TTAATTCTAGCTTATGTGTG+CGG | + | chr4_4:39971540-39971559 | Msa0680750:intron | 30.0% |
TGAATTACAAGCAATGAATG+TGG | + | chr4_4:39971686-39971705 | Msa0680750:CDS | 30.0% | |
! | GATTGAATATTTTCTCTGCT+TGG | + | chr4_4:39972072-39972091 | Msa0680750:intron | 30.0% |
! | CTTTCTTAGAGGTCTATTTT+TGG | + | chr4_4:39972253-39972272 | Msa0680750:intron | 30.0% |
!!! | TTTTTTGTCAAATAGTCTGG+TGG | + | chr4_4:39972398-39972417 | Msa0680750:intron | 30.0% |
! | TTTTTGTCAAATAGTCTGGT+GGG | + | chr4_4:39972399-39972418 | Msa0680750:intron | 30.0% |
! | GAATTCTTTTTATGTGGTTC+AGG | + | chr4_4:39972572-39972591 | Msa0680750:intron | 30.0% |
! | ACGATATCTAAAATTGTCCT+GGG | - | chr4_4:39972923-39972942 | None:intergenic | 30.0% |
! | TACGATATCTAAAATTGTCC+TGG | - | chr4_4:39972924-39972943 | None:intergenic | 30.0% |
AAATAGGTCTCAATTTACGT+GGG | - | chr4_4:39973065-39973084 | None:intergenic | 30.0% | |
TAAATAGGTCTCAATTTACG+TGG | - | chr4_4:39973066-39973085 | None:intergenic | 30.0% | |
AAGGATTGAGCTTCTTAAAT+TGG | - | chr4_4:39973261-39973280 | None:intergenic | 30.0% | |
! | TATGCACTAGTTATTTCAAC+GGG | + | chr4_4:39973346-39973365 | Msa0680750:intron | 30.0% |
! | TAATTTTCTACATTCGGGAT+AGG | + | chr4_4:39973792-39973811 | Msa0680750:intron | 30.0% |
TTTCTCCGATTTCAAAATCT+GGG | - | chr4_4:39973869-39973888 | None:intergenic | 30.0% | |
! | TTTTCTCCGATTTCAAAATC+TGG | - | chr4_4:39973870-39973889 | None:intergenic | 30.0% |
! | AGACGAAGTGGATATATTTT+TGG | + | chr4_4:39973989-39974008 | Msa0680750:intron | 30.0% |
ATCATCATAAACATCTTGGA+AGG | - | chr4_4:39974325-39974344 | None:intergenic | 30.0% | |
!! | ACTGCTTTAAAAAACACGTA+AGG | - | chr4_4:39974396-39974415 | None:intergenic | 30.0% |
ATACGAACACGGAAAATTTA+AGG | + | chr4_4:39974528-39974547 | Msa0680750:CDS | 30.0% | |
TTGTCCAATTAATGCTAATC+GGG | - | chr4_4:39974601-39974620 | None:intergenic | 30.0% | |
!! | TAGAAATTTCCAGCCATTTT+GGG | - | chr4_4:39974696-39974715 | None:intergenic | 30.0% |
! | ATAGAAATTTCCAGCCATTT+TGG | - | chr4_4:39974697-39974716 | None:intergenic | 30.0% |
! | ATCAAAATTGGTAGTTGCAG+CGG | - | chr4_4:39967980-39967999 | None:intergenic | 35.0% |
TTGCTTATAATTGTAACCGG+AGG | + | chr4_4:39968212-39968231 | Msa0680750:intron | 35.0% | |
TGCTTATAATTGTAACCGGA+GGG | + | chr4_4:39968213-39968232 | Msa0680750:intron | 35.0% | |
! | TGGAAAAGTATGAGTTGTCT+TGG | - | chr4_4:39968272-39968291 | None:intergenic | 35.0% |
CATTGAGATGTCAAATCTGT+AGG | - | chr4_4:39968341-39968360 | None:intergenic | 35.0% | |
CTACAGATTTGACATCTCAA+TGG | + | chr4_4:39968339-39968358 | Msa0680750:intron | 35.0% | |
CTCAATGGGTGTTAATACAA+TGG | + | chr4_4:39968354-39968373 | Msa0680750:CDS | 35.0% | |
!! | AAAAAGGTGTCCCAAAATGA+AGG | + | chr4_4:39968402-39968421 | Msa0680750:CDS | 35.0% |
GATACTTACCTGTAGATATG+TGG | - | chr4_4:39968435-39968454 | None:intergenic | 35.0% | |
! | TATCAATTTTTCCTCGCGAT+TGG | + | chr4_4:39968836-39968855 | Msa0680750:intron | 35.0% |
! | ATCAATTTTTCCTCGCGATT+GGG | + | chr4_4:39968837-39968856 | Msa0680750:intron | 35.0% |
! | TACAAGGTCGCAATTTTGTA+GGG | - | chr4_4:39968956-39968975 | None:intergenic | 35.0% |
! | TTACAAGGTCGCAATTTTGT+AGG | - | chr4_4:39968957-39968976 | None:intergenic | 35.0% |
! | CAAGTTTAGAACACCATGAA+AGG | - | chr4_4:39969274-39969293 | None:intergenic | 35.0% |
!!! | CTTTTGACTTTTGCTAGACA+AGG | + | chr4_4:39970013-39970032 | Msa0680750:intron | 35.0% |
TGTAAATACGTGTGTATGCT+TGG | + | chr4_4:39970103-39970122 | Msa0680750:intron | 35.0% | |
GTAAATACGTGTGTATGCTT+GGG | + | chr4_4:39970104-39970123 | Msa0680750:intron | 35.0% | |
AGATATCTCAACATTCACTC+AGG | - | chr4_4:39970233-39970252 | None:intergenic | 35.0% | |
ACTGAAGTCGATCTTTCAAT+AGG | + | chr4_4:39970680-39970699 | Msa0680750:intron | 35.0% | |
GAGGAAAAAAAGATGTAGAG+GGG | + | chr4_4:39970851-39970870 | Msa0680750:intron | 35.0% | |
ATTATCACTAGTAACAGCCA+CGG | - | chr4_4:39971504-39971523 | None:intergenic | 35.0% | |
!! | TAATTCTAGCTTATGTGTGC+GGG | + | chr4_4:39971541-39971560 | Msa0680750:intron | 35.0% |
TCAAGAGAAACCATTTGAGA+TGG | + | chr4_4:39971590-39971609 | Msa0680750:CDS | 35.0% | |
! | CAAGAGAAACCATTTGAGAT+GGG | + | chr4_4:39971591-39971610 | Msa0680750:CDS | 35.0% |
ACACACAGAAATGAATTTGC+TGG | + | chr4_4:39971650-39971669 | Msa0680750:CDS | 35.0% | |
TTAGAGCAAATTTGCATGGT+TGG | + | chr4_4:39971865-39971884 | Msa0680750:intron | 35.0% | |
GTTGGACGTATAATGATCAA+TGG | - | chr4_4:39971957-39971976 | None:intergenic | 35.0% | |
ATAGCTTAGCTTAGCTATCA+GGG | - | chr4_4:39972497-39972516 | None:intergenic | 35.0% | |
TATAGCTTAGCTTAGCTATC+AGG | - | chr4_4:39972498-39972517 | None:intergenic | 35.0% | |
GATAGTATGATATGTGCCTA+TGG | + | chr4_4:39972866-39972885 | Msa0680750:CDS | 35.0% | |
ATGATATGTGCCTATGGTAA+AGG | + | chr4_4:39972872-39972891 | Msa0680750:CDS | 35.0% | |
TGATATGTGCCTATGGTAAA+GGG | + | chr4_4:39972873-39972892 | Msa0680750:CDS | 35.0% | |
! | GGGAAATTGCCATATTTTCT+TGG | + | chr4_4:39972893-39972912 | Msa0680750:CDS | 35.0% |
CTGGGATTACCAAGAAAATA+TGG | - | chr4_4:39972905-39972924 | None:intergenic | 35.0% | |
!! | CATATTTTCTTGGTAATCCC+AGG | + | chr4_4:39972903-39972922 | Msa0680750:CDS | 35.0% |
! | ATGCACTAGTTATTTCAACG+GGG | + | chr4_4:39973347-39973366 | Msa0680750:intron | 35.0% |
TATGTAGATACCTGCAGATT+TGG | + | chr4_4:39973414-39973433 | Msa0680750:intron | 35.0% | |
! | TGGACATCAGAAATTTTGAG+AGG | - | chr4_4:39973529-39973548 | None:intergenic | 35.0% |
AATATTGATGGGAAATGCTG+TGG | - | chr4_4:39973549-39973568 | None:intergenic | 35.0% | |
! | AAAAGCAGCCATACTTTTCA+AGG | - | chr4_4:39973632-39973651 | None:intergenic | 35.0% |
CGATTTCAAAATCTGGGTAT+GGG | - | chr4_4:39973863-39973882 | None:intergenic | 35.0% | |
!!! | CCATACCCAGATTTTGAAAT+CGG | + | chr4_4:39973861-39973880 | Msa0680750:intron | 35.0% |
! | TTTTCATTGGGTTTGGGTAT+GGG | - | chr4_4:39973899-39973918 | None:intergenic | 35.0% |
! | ATTTTCATTGGGTTTGGGTA+TGG | - | chr4_4:39973900-39973919 | None:intergenic | 35.0% |
ATACCCAAACCCAATGAAAA+TGG | + | chr4_4:39973899-39973918 | Msa0680750:intron | 35.0% | |
TACCCAAACCCAATGAAAAT+GGG | + | chr4_4:39973900-39973919 | Msa0680750:intron | 35.0% | |
CATAAACATCTTGGAAGGAA+TGG | - | chr4_4:39974320-39974339 | None:intergenic | 35.0% | |
!! | TAGCTTTGATGATACGAACA+CGG | + | chr4_4:39974517-39974536 | Msa0680750:intron | 35.0% |
GAACACGGAAAATTTAAGGA+GGG | + | chr4_4:39974532-39974551 | Msa0680750:CDS | 35.0% | |
AAATTTAAGGAGGGCAACAA+AGG | + | chr4_4:39974541-39974560 | Msa0680750:CDS | 35.0% | |
AATTTAAGGAGGGCAACAAA+GGG | + | chr4_4:39974542-39974561 | Msa0680750:CDS | 35.0% | |
TTGACCCGATTAGCATTAAT+TGG | + | chr4_4:39974594-39974613 | Msa0680750:CDS | 35.0% | |
!! | AGAAATTTCCAGCCATTTTG+GGG | - | chr4_4:39974695-39974714 | None:intergenic | 35.0% |
! | TGGACAAGGACCTTCATTTT+GGG | - | chr4_4:39968415-39968434 | None:intergenic | 40.0% |
TACCTGTAGATATGTGGACA+AGG | - | chr4_4:39968429-39968448 | None:intergenic | 40.0% | |
TTGAGATTAGGAAGTCCTCT+AGG | - | chr4_4:39969881-39969900 | None:intergenic | 40.0% | |
GTGATTTCGTCGTCAAATTG+TGG | - | chr4_4:39970771-39970790 | None:intergenic | 40.0% | |
! | AGATGTAGAGGGGTGATTTT+AGG | + | chr4_4:39970861-39970880 | Msa0680750:intron | 40.0% |
! | CATCGAAGAAGAGTGGTTTT+AGG | - | chr4_4:39970898-39970917 | None:intergenic | 40.0% |
CTAAAACCACTCTTCTTCGA+TGG | + | chr4_4:39970896-39970915 | Msa0680750:intron | 40.0% | |
TCTCACTAGAAAACTAGAGC+CGG | + | chr4_4:39970958-39970977 | Msa0680750:intron | 40.0% | |
GAGCTATGTGTCATGGATAA+AGG | - | chr4_4:39971056-39971075 | None:intergenic | 40.0% | |
!! | AGGACTTTGACTTGTTACAG+AGG | + | chr4_4:39971164-39971183 | Msa0680750:intron | 40.0% |
GGTACAAAGTAGCAGATAGT+TGG | - | chr4_4:39971367-39971386 | None:intergenic | 40.0% | |
TTATCACTAGTAACAGCCAC+GGG | - | chr4_4:39971503-39971522 | None:intergenic | 40.0% | |
!! | AATTCTAGCTTATGTGTGCG+GGG | + | chr4_4:39971542-39971561 | Msa0680750:intron | 40.0% |
GATCATTATACGTCCAACGA+TGG | + | chr4_4:39971959-39971978 | Msa0680750:CDS | 40.0% | |
CTTGTACTAGTTACCATCGT+TGG | - | chr4_4:39971975-39971994 | None:intergenic | 40.0% | |
GTGAATACGAGTAGAGTTCA+AGG | + | chr4_4:39972151-39972170 | Msa0680750:intron | 40.0% | |
TGGCAATTTCCCTTTACCAT+AGG | - | chr4_4:39972885-39972904 | None:intergenic | 40.0% | |
!! | ATTTACGTGGGTGTTGAGTA+CGG | - | chr4_4:39973053-39973072 | None:intergenic | 40.0% |
! | CAATTGATGACCAAATCTGC+AGG | - | chr4_4:39973427-39973446 | None:intergenic | 40.0% |
ACTCCTTGCCTAAACAAAGA+TGG | + | chr4_4:39973577-39973596 | Msa0680750:CDS | 40.0% | |
CTCCTTGCCTAAACAAAGAT+GGG | + | chr4_4:39973578-39973597 | Msa0680750:CDS | 40.0% | |
! | TTCCCATCTTTGTTTAGGCA+AGG | - | chr4_4:39973583-39973602 | None:intergenic | 40.0% |
! | TTGGCTTCCCATCTTTGTTT+AGG | - | chr4_4:39973588-39973607 | None:intergenic | 40.0% |
AAGCCAATAGTCGTTTCCAA+GGG | + | chr4_4:39973601-39973620 | Msa0680750:CDS | 40.0% | |
ATTCCCTTGGAAACGACTAT+TGG | - | chr4_4:39973607-39973626 | None:intergenic | 40.0% | |
!! | ACTTTTCAAGGCAATTCCCT+TGG | - | chr4_4:39973620-39973639 | None:intergenic | 40.0% |
GGGAATTGCCTTGAAAAGTA+TGG | + | chr4_4:39973621-39973640 | Msa0680750:CDS | 40.0% | |
ATTCGGGATAGGTTTGAGTA+TGG | + | chr4_4:39973803-39973822 | Msa0680750:intron | 40.0% | |
TTCGGGATAGGTTTGAGTAT+GGG | + | chr4_4:39973804-39973823 | Msa0680750:intron | 40.0% | |
GATAGGTTTGAGTATGGGTT+CGG | + | chr4_4:39973809-39973828 | Msa0680750:intron | 40.0% | |
ATAGGTTTGAGTATGGGTTC+GGG | + | chr4_4:39973810-39973829 | Msa0680750:intron | 40.0% | |
CCGATTTCAAAATCTGGGTA+TGG | - | chr4_4:39973864-39973883 | None:intergenic | 40.0% | |
ACCCAAACCCAATGAAAATG+GGG | + | chr4_4:39973901-39973920 | Msa0680750:intron | 40.0% | |
! | TCCCCATTTTCATTGGGTTT+GGG | - | chr4_4:39973905-39973924 | None:intergenic | 40.0% |
! | TTCCCCATTTTCATTGGGTT+TGG | - | chr4_4:39973906-39973925 | None:intergenic | 40.0% |
! | GGGTTTTCCCCATTTTCATT+GGG | - | chr4_4:39973911-39973930 | None:intergenic | 40.0% |
AAAACCCGTCAAATTGGGTT+TGG | + | chr4_4:39973924-39973943 | Msa0680750:intron | 40.0% | |
ATATCCACTTCGTCTAAGCA+TGG | - | chr4_4:39973984-39974003 | None:intergenic | 40.0% | |
! | GTGTTTGAGAGTGCATTGAT+AGG | + | chr4_4:39974192-39974211 | Msa0680750:intron | 40.0% |
CGAACACGGAAAATTTAAGG+AGG | + | chr4_4:39974531-39974550 | Msa0680750:CDS | 40.0% | |
AAGGGCTATAACATGGAGAA+TGG | + | chr4_4:39974560-39974579 | Msa0680750:CDS | 40.0% | |
ATGATGAATACGCACATTCC+TGG | + | chr4_4:39974626-39974645 | Msa0680750:CDS | 40.0% | |
ATTTACTACCCCAAAATGGC+TGG | + | chr4_4:39974684-39974703 | Msa0680750:three_prime_UTR | 40.0% | |
TTGCAGCGGAATGGACAATA+AGG | - | chr4_4:39967966-39967985 | None:intergenic | 45.0% | |
! | AATTGGTAGTTGCAGCGGAA+TGG | - | chr4_4:39967975-39967994 | None:intergenic | 45.0% |
CAGTAACAATGTACACCCTC+CGG | - | chr4_4:39968231-39968250 | None:intergenic | 45.0% | |
! | GTGGACAAGGACCTTCATTT+TGG | - | chr4_4:39968416-39968435 | None:intergenic | 45.0% |
GTCCTTGTCCACATATCTAC+AGG | + | chr4_4:39968424-39968443 | Msa0680750:CDS | 45.0% | |
ATGTTATAAGCCCAATCGCG+AGG | - | chr4_4:39968850-39968869 | None:intergenic | 45.0% | |
TCCTTGTTCACCCTACAATC+TGG | + | chr4_4:39969817-39969836 | Msa0680750:intron | 45.0% | |
CCTTGTTCACCCTACAATCT+GGG | + | chr4_4:39969818-39969837 | Msa0680750:intron | 45.0% | |
GAGTCAAATGCTTGACACAG+TGG | + | chr4_4:39970391-39970410 | Msa0680750:intron | 45.0% | |
TTTGAATTCGCGTCTTGTCG+CGG | - | chr4_4:39970719-39970738 | None:intergenic | 45.0% | |
! | GTGTTGTTAGTCGTCTTGTG+CGG | - | chr4_4:39970744-39970763 | None:intergenic | 45.0% |
CTTCATCCATCGAAGAAGAG+TGG | - | chr4_4:39970905-39970924 | None:intergenic | 45.0% | |
CACTCTTCTTCGATGGATGA+AGG | + | chr4_4:39970903-39970922 | Msa0680750:intron | 45.0% | |
CCTTAACGAGCTATGTGTCA+TGG | - | chr4_4:39971063-39971082 | None:intergenic | 45.0% | |
CCATGACACATAGCTCGTTA+AGG | + | chr4_4:39971060-39971079 | Msa0680750:intron | 45.0% | |
! | CACAAGCTTAGAGCTTTGAC+CGG | + | chr4_4:39971117-39971136 | Msa0680750:intron | 45.0% |
AAGTCAAAGCTCTGCACTAC+CGG | - | chr4_4:39971139-39971158 | None:intergenic | 45.0% | |
!! | GCAGAGCTTTGACTTGGTTT+AGG | + | chr4_4:39971144-39971163 | Msa0680750:intron | 45.0% |
TATCACTAGTAACAGCCACG+GGG | - | chr4_4:39971502-39971521 | None:intergenic | 45.0% | |
GATTGACGACCCATCTCAAA+TGG | - | chr4_4:39971603-39971622 | None:intergenic | 45.0% | |
! | TGGGTCGTCAATCTCTAGAA+AGG | + | chr4_4:39971610-39971629 | Msa0680750:CDS | 45.0% |
ACAAGCAAAGATCCGTTTCC+TGG | + | chr4_4:39971990-39972009 | Msa0680750:CDS | 45.0% | |
CCTTCAATCCAACCAGGAAA+CGG | - | chr4_4:39972005-39972024 | None:intergenic | 45.0% | |
CTTTGACCTTCAATCCAACC+AGG | - | chr4_4:39972011-39972030 | None:intergenic | 45.0% | |
CTGGTTGGATTGAAGGTCAA+AGG | + | chr4_4:39972009-39972028 | Msa0680750:CDS | 45.0% | |
GAAGCCAATAGTCGTTTCCA+AGG | + | chr4_4:39973600-39973619 | Msa0680750:CDS | 45.0% | |
TCTAACAAACCTCAAGTGGC+AGG | - | chr4_4:39973681-39973700 | None:intergenic | 45.0% | |
TCGGTCTAACAAACCTCAAG+TGG | - | chr4_4:39973685-39973704 | None:intergenic | 45.0% | |
TAGGTTTGAGTATGGGTTCG+GGG | + | chr4_4:39973811-39973830 | Msa0680750:intron | 45.0% | |
! | CGGGTTTTCCCCATTTTCAT+TGG | - | chr4_4:39973912-39973931 | None:intergenic | 45.0% |
ATGGGGAAAACCCGTCAAAT+TGG | + | chr4_4:39973918-39973937 | Msa0680750:intron | 45.0% | |
TGGGGAAAACCCGTCAAATT+GGG | + | chr4_4:39973919-39973938 | Msa0680750:intron | 45.0% | |
CGAACCAAACCCAATTTGAC+GGG | - | chr4_4:39973931-39973950 | None:intergenic | 45.0% | |
CCGAACCAAACCCAATTTGA+CGG | - | chr4_4:39973932-39973951 | None:intergenic | 45.0% | |
! | CCGTCAAATTGGGTTTGGTT+CGG | + | chr4_4:39973929-39973948 | Msa0680750:intron | 45.0% |
! | CGTCAAATTGGGTTTGGTTC+GGG | + | chr4_4:39973930-39973949 | Msa0680750:intron | 45.0% |
!! | AAATTGGGTTTGGTTCGGGT+AGG | + | chr4_4:39973934-39973953 | Msa0680750:intron | 45.0% |
GGCAACAAAGGGCTATAACA+TGG | + | chr4_4:39974553-39974572 | Msa0680750:CDS | 45.0% | |
ATTGCATACTTGACGAGACC+AGG | - | chr4_4:39974647-39974666 | None:intergenic | 45.0% | |
!!! | TTTTTTTTTATTTTTTTTCT+GGG | - | chr4_4:39968457-39968476 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTATTTTTTTTC+TGG | - | chr4_4:39968458-39968477 | None:intergenic | 5.0% |
!!! | TAGATTATAAATATTTTTTT+TGG | - | chr4_4:39969617-39969636 | None:intergenic | 5.0% |
!! | TATATCAAAATTTAAATTAA+GGG | + | chr4_4:39972690-39972709 | Msa0680750:intron | 5.0% |
CCCAGATTGTAGGGTGAACA+AGG | - | chr4_4:39969821-39969840 | None:intergenic | 50.0% | |
! | CAACCTAGTTCTCGACCTAG+AGG | + | chr4_4:39969863-39969882 | Msa0680750:intron | 50.0% |
AGTCCTCTAGGTCGAGAACT+AGG | - | chr4_4:39969869-39969888 | None:intergenic | 50.0% | |
GTGTATGCTTGGGTGTTCGT+AGG | + | chr4_4:39970114-39970133 | Msa0680750:intron | 50.0% | |
CACAGTGGATCTCACTAGAG+AGG | + | chr4_4:39970406-39970425 | Msa0680750:intron | 50.0% | |
! | ATCCGGAAGCATGGGCATTT+CGG | - | chr4_4:39970618-39970637 | None:intergenic | 50.0% |
! | GGTAGTGCAGAGCTTTGACT+TGG | + | chr4_4:39971138-39971157 | Msa0680750:intron | 50.0% |
TTATGTGTGCGGGGAGACTA+AGG | + | chr4_4:39971551-39971570 | Msa0680750:CDS | 50.0% | |
GCAAAGATCCGTTTCCTGGT+TGG | + | chr4_4:39971994-39972013 | Msa0680750:CDS | 50.0% | |
CCGTTTCCTGGTTGGATTGA+AGG | + | chr4_4:39972002-39972021 | Msa0680750:CDS | 50.0% | |
! | TCGATATGTCCTGCCACTTG+AGG | + | chr4_4:39973669-39973688 | Msa0680750:CDS | 50.0% |
TTTGAGTATGGGTTCGGGGT+GGG | + | chr4_4:39973815-39973834 | Msa0680750:intron | 50.0% | |
!! | TTGGTTCGGGTAGGTAACCA+CGG | + | chr4_4:39973943-39973962 | Msa0680750:intron | 50.0% |
GGCAACAAAACTCATACCCG+TGG | - | chr4_4:39973963-39973982 | None:intergenic | 50.0% | |
GTTGCCATGCTTAGACGAAG+TGG | + | chr4_4:39973977-39973996 | Msa0680750:intron | 50.0% | |
CACCGAAATGCCCATGCTTC+CGG | + | chr4_4:39970613-39970632 | Msa0680750:intron | 55.0% | |
! | CGTTGCAGATCCGGAAGCAT+GGG | - | chr4_4:39970626-39970645 | None:intergenic | 55.0% |
ACGTTGCAGATCCGGAAGCA+TGG | - | chr4_4:39970627-39970646 | None:intergenic | 55.0% | |
GGGCATCAACGTTGCAGATC+CGG | - | chr4_4:39970635-39970654 | None:intergenic | 55.0% | |
ATTTCACCTTCCCATCCCCG+TGG | + | chr4_4:39971484-39971503 | Msa0680750:intron | 55.0% | |
CTAGTAACAGCCACGGGGAT+GGG | - | chr4_4:39971497-39971516 | None:intergenic | 55.0% | |
ACTAGTAACAGCCACGGGGA+TGG | - | chr4_4:39971498-39971517 | None:intergenic | 55.0% | |
CGGGGAGACTAAGGAAGGAA+AGG | + | chr4_4:39971560-39971579 | Msa0680750:CDS | 55.0% | |
GTTTGAGTATGGGTTCGGGG+TGG | + | chr4_4:39973814-39973833 | Msa0680750:intron | 55.0% | |
CTGGGTATGGGACGAGTAAC+AGG | - | chr4_4:39973851-39973870 | None:intergenic | 55.0% | |
! | TGGTTCGGGTAGGTAACCAC+GGG | + | chr4_4:39973944-39973963 | Msa0680750:intron | 55.0% |
TAACAGCCACGGGGATGGGA+AGG | - | chr4_4:39971493-39971512 | None:intergenic | 60.0% | |
GTGTGCGGGGAGACTAAGGA+AGG | + | chr4_4:39971555-39971574 | Msa0680750:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 39967944 | 39974883 | 39967944 | ID=Msa0680750;Name=Msa0680750 |
chr4_4 | mRNA | 39967944 | 39974883 | 39967944 | ID=Msa0680750-mRNA-1;Parent=Msa0680750;Name=Msa0680750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=2|1|1|1|0.71|0.62|8|210|386 |
chr4_4 | exon | 39967944 | 39968004 | 39967944 | ID=Msa0680750-mRNA-1:exon:9516;Parent=Msa0680750-mRNA-1 |
chr4_4 | exon | 39968345 | 39968445 | 39968345 | ID=Msa0680750-mRNA-1:exon:9517;Parent=Msa0680750-mRNA-1 |
chr4_4 | exon | 39971550 | 39971754 | 39971550 | ID=Msa0680750-mRNA-1:exon:9518;Parent=Msa0680750-mRNA-1 |
chr4_4 | exon | 39971869 | 39972030 | 39971869 | ID=Msa0680750-mRNA-1:exon:9519;Parent=Msa0680750-mRNA-1 |
chr4_4 | exon | 39972859 | 39972940 | 39972859 | ID=Msa0680750-mRNA-1:exon:9520;Parent=Msa0680750-mRNA-1 |
chr4_4 | exon | 39973421 | 39973690 | 39973421 | ID=Msa0680750-mRNA-1:exon:9521;Parent=Msa0680750-mRNA-1 |
chr4_4 | exon | 39974288 | 39974415 | 39974288 | ID=Msa0680750-mRNA-1:exon:9522;Parent=Msa0680750-mRNA-1 |
chr4_4 | exon | 39974520 | 39974883 | 39974520 | ID=Msa0680750-mRNA-1:exon:9523;Parent=Msa0680750-mRNA-1 |
chr4_4 | five_prime_UTR | 39967944 | 39967945 | 39967944 | ID=Msa0680750-mRNA-1:five_prime_utr;Parent=Msa0680750-mRNA-1 |
chr4_4 | CDS | 39967946 | 39968004 | 39967946 | ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1 |
chr4_4 | CDS | 39968345 | 39968445 | 39968345 | ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1 |
chr4_4 | CDS | 39971550 | 39971754 | 39971550 | ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1 |
chr4_4 | CDS | 39971869 | 39972030 | 39971869 | ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1 |
chr4_4 | CDS | 39972859 | 39972940 | 39972859 | ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1 |
chr4_4 | CDS | 39973421 | 39973690 | 39973421 | ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1 |
chr4_4 | CDS | 39974288 | 39974415 | 39974288 | ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1 |
chr4_4 | CDS | 39974520 | 39974673 | 39974520 | ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1 |
chr4_4 | three_prime_UTR | 39974674 | 39974883 | 39974674 | ID=Msa0680750-mRNA-1:three_prime_utr;Parent=Msa0680750-mRNA-1 |
Gene Sequence |
Protein sequence |