AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0680750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680750 MtrunA17_Chr4g0026711 92.746 386 28 0 1 386 110 495 0.0 758
Msa0680750 MtrunA17_Chr4g0026771 72.093 387 106 2 1 386 107 492 0.0 563
Msa0680750 MtrunA17_Chr4g0026691 50.653 383 185 2 4 386 113 491 4.49e-138 402
Msa0680750 MtrunA17_Chr2g0321201 49.608 383 188 4 4 386 115 492 3.51e-136 398
Msa0680750 MtrunA17_Chr4g0026701 48.964 386 193 2 1 386 111 492 2.71e-135 395
Msa0680750 MtrunA17_Chr2g0321181 48.303 383 194 2 4 386 113 491 3.82e-132 387
Msa0680750 MtrunA17_Chr5g0419501 64.626 294 49 4 1 294 110 348 5.51e-121 354
Msa0680750 MtrunA17_Chr6g0465391 48.187 386 165 6 1 386 110 460 5.95e-120 355
Msa0680750 MtrunA17_Chr4g0026911 69.730 185 54 2 204 386 3 187 1.16e-90 271
Msa0680750 MtrunA17_Chr1g0176054 35.516 397 230 9 3 386 225 608 7.44e-81 259
Msa0680750 MtrunA17_Chr5g0431281 63.587 184 65 2 204 386 28 210 8.97e-76 233
Msa0680750 MtrunA17_Chr5g0431251 75.781 128 31 0 77 204 3 130 1.88e-68 213
Msa0680750 MtrunA17_Chr5g0419491 89.362 94 10 0 293 386 7 100 9.10e-56 178
Msa0680750 MtrunA17_Chr4g0026891 68.293 123 37 2 1 122 107 228 2.36e-51 173
Msa0680750 MtrunA17_Chr5g0431261 59.341 91 37 0 204 294 3 93 1.29e-32 117
Msa0680750 MtrunA17_Chr4g0026901 86.207 58 8 0 122 179 16 73 9.59e-32 115
Msa0680750 MtrunA17_Chr6g0465381 49.640 139 70 0 138 276 1 139 1.15e-31 118
Msa0680750 MtrunA17_Chr5g0431271 73.134 67 18 0 138 204 1 67 1.57e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680750 AT5G22500.1 49.871 387 187 4 1 386 110 490 1.51e-140 409
Msa0680750 AT3G44540.1 50.904 387 185 4 1 386 110 492 1.74e-140 409
Msa0680750 AT3G44550.2 48.586 389 194 2 1 386 1 386 1.45e-132 385
Msa0680750 AT3G44550.1 48.586 389 194 2 1 386 110 495 2.33e-131 386
Msa0680750 AT4G33790.2 46.214 383 201 4 1 383 1 378 8.43e-129 375
Msa0680750 AT4G33790.1 46.214 383 201 4 1 383 114 491 1.29e-127 376
Msa0680750 AT3G44560.1 48.586 389 194 2 1 386 110 495 6.24e-125 370
Msa0680750 AT5G22420.4 46.113 373 194 6 1 373 1 366 3.89e-119 350
Msa0680750 AT5G22420.1 44.142 367 198 6 7 373 43 402 3.02e-110 329
Msa0680750 AT5G22420.3 45.070 355 188 6 19 373 3 350 6.06e-109 324
Msa0680750 AT5G22420.6 45.070 355 188 6 19 373 3 350 6.06e-109 324
Msa0680750 AT5G22500.2 50.680 294 139 3 1 294 110 397 4.35e-108 323
Msa0680750 AT3G44560.3 48.961 337 169 1 1 337 110 443 1.50e-106 321
Msa0680750 AT3G44560.2 50.169 295 144 1 1 295 110 401 1.79e-95 291
Msa0680750 AT5G22420.5 44.062 320 172 6 54 373 3 315 8.77e-92 279
Msa0680750 AT5G22420.2 43.771 297 164 3 77 373 3 296 6.56e-88 268
Msa0680750 AT5G22420.7 43.771 297 164 3 77 373 3 296 6.56e-88 268
Msa0680750 AT3G11980.1 37.940 398 220 10 3 386 229 613 2.79e-80 258
Msa0680750 AT3G44540.2 55.825 206 87 2 1 206 110 311 7.09e-80 248
Msa0680750 AT3G44540.3 55.825 206 87 2 1 206 110 311 7.09e-80 248
Msa0680750 AT3G56700.2 33.681 383 226 8 3 382 182 539 2.88e-64 214
Msa0680750 AT3G56700.1 31.593 383 213 9 3 382 182 518 3.80e-53 184

Find 86 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAAATTTCCAGCCATTT+TGG 0.174184 4_4:-39974694 None:intergenic
TATATTCAAGGTCTTAAATT+TGG 0.180226 4_4:+39974278 Msa0680750:intron
ACACTTCATATTTGGATAAT+AGG 0.192277 4_4:-39974770 None:intergenic
ATGTTTCTACACTTCATATT+TGG 0.201055 4_4:-39974778 None:intergenic
GTGGACAAGGACCTTCATTT+TGG 0.201357 4_4:-39968413 None:intergenic
TTGACCCGATTAGCATTAAT+TGG 0.205325 4_4:+39974594 Msa0680750:CDS
TAATCACCTTTCATCAAAAT+TGG 0.225214 4_4:-39967989 None:intergenic
ATACGAACACGGAAAATTTA+AGG 0.283879 4_4:+39974528 Msa0680750:CDS
TGTTTCAAAAGTATTTAAAA+AGG 0.290161 4_4:+39974822 Msa0680750:three_prime_UTR
TGTTTGAAAAGTATTCAAAA+TGG 0.294267 4_4:+39974728 Msa0680750:three_prime_UTR
CTGGGATTACCAAGAAAATA+TGG 0.306717 4_4:-39972902 None:intergenic
TTTGTCCAATTAATGCTAAT+CGG 0.324881 4_4:-39974599 None:intergenic
AATTATTTACTACCCCAAAA+TGG 0.331678 4_4:+39974680 Msa0680750:three_prime_UTR
TATGTAGATACCTGCAGATT+TGG 0.336833 4_4:+39973414 Msa0680750:intron
ATTCCCTTGGAAACGACTAT+TGG 0.353883 4_4:-39973604 None:intergenic
CCGTTTCCTGGTTGGATTGA+AGG 0.357677 4_4:+39972002 Msa0680750:CDS
ATGTCTTAAACATCGCAAAA+AGG 0.363896 4_4:+39968386 Msa0680750:CDS
ACAAGCAAAGATCCGTTTCC+TGG 0.377539 4_4:+39971990 Msa0680750:CDS
TTGGCTTCCCATCTTTGTTT+AGG 0.410010 4_4:-39973585 None:intergenic
GGGAATTGCCTTGAAAAGTA+TGG 0.413041 4_4:+39973621 Msa0680750:CDS
TACGATATCTAAAATTGTCC+TGG 0.424094 4_4:-39972921 None:intergenic
TTTGTGAATACATATGTGTT+TGG 0.427147 4_4:-39971888 None:intergenic
AGTTATCATCATAAACATCT+TGG 0.434245 4_4:-39974326 None:intergenic
TAATTCTAGCTTATGTGTGC+GGG 0.446461 4_4:+39971541 Msa0680750:intron
ATGATGAATACGCACATTCC+TGG 0.447431 4_4:+39974626 Msa0680750:CDS
ACACACAGAAATGAATTTGC+TGG 0.449134 4_4:+39971650 Msa0680750:CDS
TTAGAGCAAATTTGCATGGT+TGG 0.450318 4_4:+39971865 Msa0680750:intron
CATAAACATCTTGGAAGGAA+TGG 0.454109 4_4:-39974317 None:intergenic
ACTCCTTGCCTAAACAAAGA+TGG 0.462744 4_4:+39973577 Msa0680750:CDS
TGATATGTGCCTATGGTAAA+GGG 0.463507 4_4:+39972873 Msa0680750:CDS
ATTTACTACCCCAAAATGGC+TGG 0.464914 4_4:+39974684 Msa0680750:three_prime_UTR
TTCCCATCTTTGTTTAGGCA+AGG 0.468942 4_4:-39973580 None:intergenic
TTGTCCAATTAATGCTAATC+GGG 0.470692 4_4:-39974598 None:intergenic
GATTGACGACCCATCTCAAA+TGG 0.474980 4_4:-39971600 None:intergenic
ATGATATGTGCCTATGGTAA+AGG 0.478427 4_4:+39972872 Msa0680750:CDS
TTATGTGTGCGGGGAGACTA+AGG 0.481843 4_4:+39971551 Msa0680750:CDS
CTGGTTGGATTGAAGGTCAA+AGG 0.485153 4_4:+39972009 Msa0680750:CDS
CAAGAGAAACCATTTGAGAT+GGG 0.491438 4_4:+39971591 Msa0680750:CDS
TCAAGAGAAACCATTTGAGA+TGG 0.493054 4_4:+39971590 Msa0680750:CDS
CTCCTTGCCTAAACAAAGAT+GGG 0.493790 4_4:+39973578 Msa0680750:CDS
GTCCTTGTCCACATATCTAC+AGG 0.498156 4_4:+39968424 Msa0680750:CDS
CTACAGATTTGACATCTCAA+TGG 0.499005 4_4:+39968339 Msa0680750:intron
TCAATGGGTGTTAATACAAT+GGG 0.499396 4_4:+39968355 Msa0680750:CDS
CTTGTACTAGTTACCATCGT+TGG 0.503449 4_4:-39971972 None:intergenic
GCAAAGATCCGTTTCCTGGT+TGG 0.504628 4_4:+39971994 Msa0680750:CDS
TATGTATTCACAAAAGCAAT+GGG 0.505601 4_4:+39971897 Msa0680750:CDS
CTCAATGGGTGTTAATACAA+TGG 0.505733 4_4:+39968354 Msa0680750:CDS
AAGGGCTATAACATGGAGAA+TGG 0.506365 4_4:+39974560 Msa0680750:CDS
TTGCAGCGGAATGGACAATA+AGG 0.506628 4_4:-39967963 None:intergenic
TACAGATTTGACATCTCAAT+GGG 0.511926 4_4:+39968340 Msa0680750:intron
TGGCAATTTCCCTTTACCAT+AGG 0.514404 4_4:-39972882 None:intergenic
AAATTTAAGGAGGGCAACAA+AGG 0.516552 4_4:+39974541 Msa0680750:CDS
AATTGGTAGTTGCAGCGGAA+TGG 0.527290 4_4:-39967972 None:intergenic
ATCAAAATTGGTAGTTGCAG+CGG 0.535053 4_4:-39967977 None:intergenic
CCTTCAATCCAACCAGGAAA+CGG 0.537673 4_4:-39972002 None:intergenic
ATTGCATACTTGACGAGACC+AGG 0.540387 4_4:-39974644 None:intergenic
GTTGGACGTATAATGATCAA+TGG 0.544672 4_4:-39971954 None:intergenic
TTAATTCTAGCTTATGTGTG+CGG 0.546785 4_4:+39971540 Msa0680750:intron
TCGATATGTCCTGCCACTTG+AGG 0.547266 4_4:+39973669 Msa0680750:CDS
AAAATTAGAGCAAATTTGCA+TGG 0.552835 4_4:+39971861 Msa0680750:intron
GATAGTATGATATGTGCCTA+TGG 0.564664 4_4:+39972866 Msa0680750:CDS
ACGATATCTAAAATTGTCCT+GGG 0.565879 4_4:-39972920 None:intergenic
TGGGTCGTCAATCTCTAGAA+AGG 0.568466 4_4:+39971610 Msa0680750:CDS
TCTAACAAACCTCAAGTGGC+AGG 0.578523 4_4:-39973678 None:intergenic
GATACTTACCTGTAGATATG+TGG 0.578543 4_4:-39968432 None:intergenic
AATTTAAGGAGGGCAACAAA+GGG 0.581635 4_4:+39974542 Msa0680750:CDS
GGCAACAAAGGGCTATAACA+TGG 0.581652 4_4:+39974553 Msa0680750:CDS
CAATTGATGACCAAATCTGC+AGG 0.583208 4_4:-39973424 None:intergenic
ATCATCATAAACATCTTGGA+AGG 0.583944 4_4:-39974322 None:intergenic
ATATGTATTCACAAAAGCAA+TGG 0.587895 4_4:+39971896 Msa0680750:CDS
CTTTGACCTTCAATCCAACC+AGG 0.590282 4_4:-39972008 None:intergenic
GAAGCCAATAGTCGTTTCCA+AGG 0.596362 4_4:+39973600 Msa0680750:CDS
CGGGGAGACTAAGGAAGGAA+AGG 0.602288 4_4:+39971560 Msa0680750:CDS
TCGGTCTAACAAACCTCAAG+TGG 0.615541 4_4:-39973682 None:intergenic
AATATTGATGGGAAATGCTG+TGG 0.630210 4_4:-39973546 None:intergenic
TGAATTACAAGCAATGAATG+TGG 0.639826 4_4:+39971686 Msa0680750:CDS
CGAACACGGAAAATTTAAGG+AGG 0.646321 4_4:+39974531 Msa0680750:CDS
TAACTACAAGAAAATACGAA+TGG 0.647002 4_4:+39974344 Msa0680750:CDS
TTCTTAATGAAGAAGAAACA+TGG 0.655254 4_4:-39973501 None:intergenic
AATTCTAGCTTATGTGTGCG+GGG 0.658485 4_4:+39971542 Msa0680750:intron
TAGCTTTGATGATACGAACA+CGG 0.658725 4_4:+39974517 Msa0680750:intron
GTGTGCGGGGAGACTAAGGA+AGG 0.662909 4_4:+39971555 Msa0680750:CDS
GATCATTATACGTCCAACGA+TGG 0.666558 4_4:+39971959 Msa0680750:CDS
TACCTGTAGATATGTGGACA+AGG 0.671648 4_4:-39968426 None:intergenic
AAGCCAATAGTCGTTTCCAA+GGG 0.679107 4_4:+39973601 Msa0680750:CDS
GAACACGGAAAATTTAAGGA+GGG 0.691082 4_4:+39974532 Msa0680750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTATTTTTAAATTAA+TGG - chr4_4:39969538-39969557 None:intergenic 0.0%
!!! TAATTATATTTTATATATAA+TGG + chr4_4:39972804-39972823 Msa0680750:intron 0.0%
!!! TTTTTTTTTTTTTTGACAAA+AGG - chr4_4:39968881-39968900 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr4_4:39969308-39969327 Msa0680750:intron 10.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG + chr4_4:39969369-39969388 Msa0680750:intron 10.0%
!!! TAAGTAAATTTTTTTTTGTA+GGG + chr4_4:39969370-39969389 Msa0680750:intron 10.0%
!!! TTTTAAATTAATGGTAAAAT+TGG - chr4_4:39969529-39969548 None:intergenic 10.0%
!! TTATGCTTATATATTAAAAT+AGG + chr4_4:39971415-39971434 Msa0680750:intron 10.0%
!! TAACAAAAAAAATTAAAAAC+TGG + chr4_4:39971450-39971469 Msa0680750:intron 10.0%
!!! TTTTTAATAAAAGATTGATA+TGG + chr4_4:39972127-39972146 Msa0680750:intron 10.0%
!! CATTTATGAATAATTTATTT+GGG - chr4_4:39972226-39972245 None:intergenic 10.0%
!! ACATTTATGAATAATTTATT+TGG - chr4_4:39972227-39972246 None:intergenic 10.0%
!! CTATATCAAAATTTAAATTA+AGG + chr4_4:39972689-39972708 Msa0680750:intron 10.0%
!!! GATATTTTCATAAAAAATAA+TGG - chr4_4:39973152-39973171 None:intergenic 10.0%
!!! TTAATCCTTTTAATATTTTT+TGG + chr4_4:39974253-39974272 Msa0680750:intron 10.0%
!!! ATGAAAATATGAATTATTTT+TGG + chr4_4:39974491-39974510 Msa0680750:intron 10.0%
!!! TAAGCAAAAATTCATATTTT+AGG - chr4_4:39968199-39968218 None:intergenic 15.0%
!!! ATGATCAATTTAATTTAACA+TGG - chr4_4:39968292-39968311 None:intergenic 15.0%
!!! TAATTTTTTTTCACAAGTAT+AGG - chr4_4:39968608-39968627 None:intergenic 15.0%
!! TACTTCTATATTATTTGTTT+CGG - chr4_4:39968637-39968656 None:intergenic 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG - chr4_4:39969399-39969418 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr4_4:39969059-39969078 None:intergenic 15.0%
!!! AAATTTTTGCGATATTTTTT+CGG - chr4_4:39969143-39969162 None:intergenic 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr4_4:39969399-39969418 Msa0680750:intron 15.0%
!! TAGATATGTAAGAATAAAAT+TGG - chr4_4:39971322-39971341 None:intergenic 15.0%
!! AAAAAAAATTAAAAACTGGA+AGG + chr4_4:39971454-39971473 Msa0680750:intron 15.0%
!! ACTGTATAAAATAAAAAGTA+AGG - chr4_4:39971790-39971809 None:intergenic 15.0%
!!! TTATTTAAGAGTTTTAAACT+TGG - chr4_4:39972294-39972313 None:intergenic 15.0%
!! AACTCTTAAATAATGTTATT+AGG + chr4_4:39972301-39972320 Msa0680750:intron 15.0%
!! ACTCTTAAATAATGTTATTA+GGG + chr4_4:39972302-39972321 Msa0680750:intron 15.0%
!!! ATTTTTTTTGATAGAAATGA+GGG - chr4_4:39972367-39972386 None:intergenic 15.0%
!!! AATTTTTTTTGATAGAAATG+AGG - chr4_4:39972368-39972387 None:intergenic 15.0%
!! AATATATTAAAGATAGTATG+AGG + chr4_4:39972544-39972563 Msa0680750:intron 15.0%
!! CTTGATAAAAAAAAAATATG+AGG + chr4_4:39972621-39972640 Msa0680750:intron 15.0%
!!! ACACAAAATATTATTTTGTT+GGG + chr4_4:39972657-39972676 Msa0680750:intron 15.0%
!! ATATAATTAGCAACTAAAAT+AGG - chr4_4:39972793-39972812 None:intergenic 15.0%
!! CTTTAATCCAAAATTTAAAT+AGG - chr4_4:39973081-39973100 None:intergenic 15.0%
!! GCAAGTTATTTAAAAATTTA+AGG - chr4_4:39973280-39973299 None:intergenic 15.0%
!!! ATAAAGTAATTTTCTACATT+CGG + chr4_4:39973786-39973805 Msa0680750:intron 15.0%
!! TAGTGAATTAAATAATATGT+TGG - chr4_4:39974063-39974082 None:intergenic 15.0%
!! AAAAGGATTAATTAGTAAAA+GGG - chr4_4:39974244-39974263 None:intergenic 15.0%
!! TAAAAGGATTAATTAGTAAA+AGG - chr4_4:39974245-39974264 None:intergenic 15.0%
!! ATATGCCAAAAAATATTAAA+AGG - chr4_4:39974261-39974280 None:intergenic 15.0%
!!! AATTCATATTTTCATGAATA+TGG - chr4_4:39974486-39974505 None:intergenic 15.0%
!!! TGTTTCAAAAGTATTTAAAA+AGG + chr4_4:39974822-39974841 Msa0680750:three_prime_UTR 15.0%
!! CATTCAATAAATGATGTATA+CGG + chr4_4:39968135-39968154 Msa0680750:intron 20.0%
!!! TTTTTGCTTATAATTGTAAC+CGG + chr4_4:39968209-39968228 Msa0680750:intron 20.0%
!!! GTTATTTTTTTTTTCTGTCA+AGG - chr4_4:39968514-39968533 None:intergenic 20.0%
!!! TTTTTTTTTTTGACAAAAGG+TGG - chr4_4:39968878-39968897 None:intergenic 20.0%
!! TTAACCCAAAAAACATTATA+AGG - chr4_4:39968920-39968939 None:intergenic 20.0%
!!! TTTTGGGTTAATTATGTTTT+TGG + chr4_4:39968929-39968948 Msa0680750:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr4_4:39969089-39969108 Msa0680750:intron 20.0%
!!! TAACCAAAATTTATTTTAGC+AGG + chr4_4:39969336-39969355 Msa0680750:intron 20.0%
!!! AACCAAAATTTATTTTAGCA+GGG + chr4_4:39969337-39969356 Msa0680750:intron 20.0%
!!! TTTCAGCTAATTTATTTTGA+AGG + chr4_4:39969680-39969699 Msa0680750:intron 20.0%
!! AGTCAAAAGAAACATATATA+AGG - chr4_4:39970002-39970021 None:intergenic 20.0%
!!! ATCCAATTTTGATTAAAGAA+GGG - chr4_4:39970150-39970169 None:intergenic 20.0%
!!! AATCCAATTTTGATTAAAGA+AGG - chr4_4:39970151-39970170 None:intergenic 20.0%
!! AACATATATTTCTTCAACAA+CGG - chr4_4:39970202-39970221 None:intergenic 20.0%
!! TTCATCAATGAGAATAATTA+AGG + chr4_4:39970287-39970306 Msa0680750:intron 20.0%
!! ACAAATTCAATCAATGATTT+GGG - chr4_4:39970655-39970674 None:intergenic 20.0%
!! TACAAATTCAATCAATGATT+TGG - chr4_4:39970656-39970675 None:intergenic 20.0%
!! TTTCTTTCAATCTAAATAAG+TGG - chr4_4:39970830-39970849 None:intergenic 20.0%
!! TATTTAGATTGAAAGAAAAG+AGG + chr4_4:39970832-39970851 Msa0680750:intron 20.0%
!! TACTCTATTTATGTATTGTT+CGG - chr4_4:39971388-39971407 None:intergenic 20.0%
!! TGCTTATATATTAAAATAGG+AGG + chr4_4:39971418-39971437 Msa0680750:intron 20.0%
!! GCTTATATATTAAAATAGGA+GGG + chr4_4:39971419-39971438 Msa0680750:intron 20.0%
!! TGAAAAATTATGGAATTGAA+AGG + chr4_4:39971733-39971752 Msa0680750:CDS 20.0%
!! AGTAAGGAAAAAAATAAGTA+TGG - chr4_4:39971774-39971793 None:intergenic 20.0%
!!! AGTAACATCTTTTTTTATAG+AGG - chr4_4:39972200-39972219 None:intergenic 20.0%
!!! CAAATACATTGTCTTTTTTT+TGG + chr4_4:39972335-39972354 Msa0680750:intron 20.0%
!!! TTTTTTTTTGTCAAATAGTC+TGG + chr4_4:39972395-39972414 Msa0680750:intron 20.0%
!! AGCAATTAAATTAAAAACAC+AGG - chr4_4:39972603-39972622 None:intergenic 20.0%
!!! GACACAAAATATTATTTTGT+TGG + chr4_4:39972656-39972675 Msa0680750:intron 20.0%
!! CAAAGAGTGATAAAAAAAAA+AGG - chr4_4:39972993-39973012 None:intergenic 20.0%
!!! CTTTTTTTTTTATCACTCTT+TGG + chr4_4:39972991-39973010 Msa0680750:intron 20.0%
!! AAAGAAAAATGAACTATCAA+AGG - chr4_4:39973023-39973042 None:intergenic 20.0%
!!! ATTGAGACCTATTTAAATTT+TGG + chr4_4:39973071-39973090 Msa0680750:intron 20.0%
!!! AGTTTTCATGAAATATTGAT+GGG - chr4_4:39973560-39973579 None:intergenic 20.0%
!! GTTGCTTCTTTAAATATTAA+TGG + chr4_4:39973713-39973732 Msa0680750:intron 20.0%
!!! TAAAGTAATTTTCTACATTC+GGG + chr4_4:39973787-39973806 Msa0680750:intron 20.0%
!!! TATTTTTTGGCATATATTCA+AGG + chr4_4:39974266-39974285 Msa0680750:intron 20.0%
!! TATATTCAAGGTCTTAAATT+TGG + chr4_4:39974278-39974297 Msa0680750:intron 20.0%
!! TAACATCTAGTAAATAGAAA+AGG - chr4_4:39974435-39974454 None:intergenic 20.0%
!!! TGTTTGAAAAGTATTCAAAA+TGG + chr4_4:39974728-39974747 Msa0680750:three_prime_UTR 20.0%
! TAATCACCTTTCATCAAAAT+TGG - chr4_4:39967992-39968011 None:intergenic 25.0%
! GAAAGGTGATTAAAGAATTA+AGG + chr4_4:39968000-39968019 Msa0680750:intron 25.0%
!!! CTCGTTTTGAAAAAAAAACA+AGG - chr4_4:39968041-39968060 None:intergenic 25.0%
! TATAATATATGCAAGGTTTG+AGG - chr4_4:39968071-39968090 None:intergenic 25.0%
!!! TACCACCTTATAATGTTTTT+TGG + chr4_4:39968912-39968931 Msa0680750:intron 25.0%
!!! ACCACCTTATAATGTTTTTT+GGG + chr4_4:39968913-39968932 Msa0680750:intron 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr4_4:39969048-39969067 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr4_4:39969113-39969132 Msa0680750:intron 25.0%
! TTTAGTAAATGAACCTTTCA+TGG + chr4_4:39969258-39969277 Msa0680750:intron 25.0%
!! TTAGAAGGTCACAATTTTAT+AGG + chr4_4:39969429-39969448 Msa0680750:intron 25.0%
!! TAGAAGGTCACAATTTTATA+GGG + chr4_4:39969430-39969449 Msa0680750:intron 25.0%
!!! ACATGGGTTAAATATGTTTT+TGG - chr4_4:39969457-39969476 None:intergenic 25.0%
!! GTAACTTGTCAAAAAAACAT+GGG - chr4_4:39969473-39969492 None:intergenic 25.0%
!! AGTAACTTGTCAAAAAAACA+TGG - chr4_4:39969474-39969493 None:intergenic 25.0%
!! TAATCTAGCTCAAAACTAAA+AGG + chr4_4:39969630-39969649 Msa0680750:intron 25.0%
! GTTAATAAAGAACAAGTTTG+TGG - chr4_4:39969660-39969679 None:intergenic 25.0%
! TACCCTTCTTTAATCAAAAT+TGG + chr4_4:39970145-39970164 Msa0680750:intron 25.0%
! AGGAAAGTTTATTCTAACTT+TGG - chr4_4:39970328-39970347 None:intergenic 25.0%
! AATGACTATTATCTCAAAGA+AGG - chr4_4:39970348-39970367 None:intergenic 25.0%
! AAACATCGTTAAAAACGTAA+AGG + chr4_4:39970506-39970525 Msa0680750:intron 25.0%
! ACGAAATCACAAAAATACAA+AGG + chr4_4:39970781-39970800 Msa0680750:intron 25.0%
! CGAAATCACAAAAATACAAA+GGG + chr4_4:39970782-39970801 Msa0680750:intron 25.0%
! AAAATAAATTCAGTTACAGC+CGG - chr4_4:39970980-39970999 None:intergenic 25.0%
! AAAACTTTGCATCAAGATTA+AGG - chr4_4:39971032-39971051 None:intergenic 25.0%
! TGTGCAGAAAATATAAGTAT+AGG - chr4_4:39971206-39971225 None:intergenic 25.0%
! AAGTATGCGATGAAAAATTA+TGG + chr4_4:39971723-39971742 Msa0680750:CDS 25.0%
! AAAATTAGAGCAAATTTGCA+TGG + chr4_4:39971861-39971880 Msa0680750:intron 25.0%
! TTTGTGAATACATATGTGTT+TGG - chr4_4:39971891-39971910 None:intergenic 25.0%
! ATATGTATTCACAAAAGCAA+TGG + chr4_4:39971896-39971915 Msa0680750:CDS 25.0%
! TATGTATTCACAAAAGCAAT+GGG + chr4_4:39971897-39971916 Msa0680750:CDS 25.0%
! AAAAGAAAACATGAACATGA+TGG - chr4_4:39972105-39972124 None:intergenic 25.0%
! AATGTTCAATACTTTCTTAG+AGG + chr4_4:39972242-39972261 Msa0680750:intron 25.0%
!! AATAATGTTATTAGGGTACT+TGG + chr4_4:39972309-39972328 Msa0680750:intron 25.0%
! CTTCATTTATTCATCTTAAG+AGG - chr4_4:39972435-39972454 None:intergenic 25.0%
!! GAGTTTGAATTCTTTTTATG+TGG + chr4_4:39972566-39972585 Msa0680750:intron 25.0%
!! ATATGCACTAGTTATTTCAA+CGG + chr4_4:39973345-39973364 Msa0680750:intron 25.0%
!! ACATGGTAGATGAAATTTTT+AGG - chr4_4:39973487-39973506 None:intergenic 25.0%
! TTCTTAATGAAGAAGAAACA+TGG - chr4_4:39973504-39973523 None:intergenic 25.0%
!! GAGTTTTCATGAAATATTGA+TGG - chr4_4:39973561-39973580 None:intergenic 25.0%
! AAAGAAGCAACTAAATCAAT+CGG - chr4_4:39973704-39973723 None:intergenic 25.0%
!! AAGAAAGTTCATTGGTAATT+TGG - chr4_4:39974029-39974048 None:intergenic 25.0%
! CTGTAAAAAAGAAAGTTCAT+TGG - chr4_4:39974037-39974056 None:intergenic 25.0%
!!! TTCAACACATATTTTCTAGT+TGG + chr4_4:39974085-39974104 Msa0680750:intron 25.0%
! TGTTTCTCACTAAATTTATG+TGG + chr4_4:39974120-39974139 Msa0680750:intron 25.0%
!!! TCTCAAACACACATTTTAAT+TGG - chr4_4:39974182-39974201 None:intergenic 25.0%
! AGTTATCATCATAAACATCT+TGG - chr4_4:39974329-39974348 None:intergenic 25.0%
! TAACTACAAGAAAATACGAA+TGG + chr4_4:39974344-39974363 Msa0680750:CDS 25.0%
! ATGAATATGGAGAAGAAAAA+TGG - chr4_4:39974473-39974492 None:intergenic 25.0%
! TTTGTCCAATTAATGCTAAT+CGG - chr4_4:39974602-39974621 None:intergenic 25.0%
! AATTATTTACTACCCCAAAA+TGG + chr4_4:39974680-39974699 Msa0680750:three_prime_UTR 25.0%
! ACACTTCATATTTGGATAAT+AGG - chr4_4:39974773-39974792 None:intergenic 25.0%
!! ATGTTTCTACACTTCATATT+TGG - chr4_4:39974781-39974800 None:intergenic 25.0%
!! CAACTACCAATTTTGATGAA+AGG + chr4_4:39967983-39968002 Msa0680750:CDS 30.0%
! GAGAGTGTATAATATATGCA+AGG - chr4_4:39968078-39968097 None:intergenic 30.0%
TGCATATATTATACACTCTC+TGG + chr4_4:39968078-39968097 Msa0680750:intron 30.0%
TACAGATTTGACATCTCAAT+GGG + chr4_4:39968340-39968359 Msa0680750:intron 30.0%
TCAATGGGTGTTAATACAAT+GGG + chr4_4:39968355-39968374 Msa0680750:CDS 30.0%
ATGTCTTAAACATCGCAAAA+AGG + chr4_4:39968386-39968405 Msa0680750:CDS 30.0%
! TTTTTCACAAGTATAGGACA+AGG - chr4_4:39968602-39968621 None:intergenic 30.0%
ACCCAAAAAACATTATAAGG+TGG - chr4_4:39968917-39968936 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr4_4:39968972-39968991 None:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr4_4:39969016-39969035 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr4_4:39969017-39969036 None:intergenic 30.0%
!!! TTTTTGCGATATTTTTTCGG+AGG - chr4_4:39969140-39969159 None:intergenic 30.0%
! GTCCCTGCTAAAATAAATTT+TGG - chr4_4:39969342-39969361 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr4_4:39969414-39969433 Msa0680750:intron 30.0%
TTTGAAGGTGAGAAAAACAT+AGG + chr4_4:39969695-39969714 Msa0680750:intron 30.0%
GAACAAGGATAAACTATATG+CGG - chr4_4:39969806-39969825 None:intergenic 30.0%
TATTGTAATCCCAGATTGTA+GGG - chr4_4:39969830-39969849 None:intergenic 30.0%
TTATTGTAATCCCAGATTGT+AGG - chr4_4:39969831-39969850 None:intergenic 30.0%
TAAATCTCTGCATTGAGATT+AGG - chr4_4:39969893-39969912 None:intergenic 30.0%
ATAGTGTTTGCACAAATTGT+AGG + chr4_4:39969934-39969953 Msa0680750:intron 30.0%
TGAATGTTGAGATATCTTAG+AGG + chr4_4:39970236-39970255 Msa0680750:intron 30.0%
GTTTATTCTAACTTTGGCAA+GGG - chr4_4:39970322-39970341 None:intergenic 30.0%
AGTTTATTCTAACTTTGGCA+AGG - chr4_4:39970323-39970342 None:intergenic 30.0%
GTCGTTGTATGATATTAACT+TGG - chr4_4:39970559-39970578 None:intergenic 30.0%
AAGAGGAAAAAAAGATGTAG+AGG + chr4_4:39970849-39970868 Msa0680750:intron 30.0%
AGAGGAAAAAAAGATGTAGA+GGG + chr4_4:39970850-39970869 Msa0680750:intron 30.0%
AAGAAAGTTTAGAGAGAGAT+TGG + chr4_4:39970929-39970948 Msa0680750:intron 30.0%
ATCAAGATTAAGGTCAATTG+AGG - chr4_4:39971022-39971041 None:intergenic 30.0%
TTAAGAGCTTTCAAACACTT+AGG + chr4_4:39971083-39971102 Msa0680750:intron 30.0%
TAAGAGCTTTCAAACACTTA+GGG + chr4_4:39971084-39971103 Msa0680750:intron 30.0%
AAGCATGATTGAGAACAATT+AGG - chr4_4:39971251-39971270 None:intergenic 30.0%
!! TTAATTCTAGCTTATGTGTG+CGG + chr4_4:39971540-39971559 Msa0680750:intron 30.0%
TGAATTACAAGCAATGAATG+TGG + chr4_4:39971686-39971705 Msa0680750:CDS 30.0%
! GATTGAATATTTTCTCTGCT+TGG + chr4_4:39972072-39972091 Msa0680750:intron 30.0%
! CTTTCTTAGAGGTCTATTTT+TGG + chr4_4:39972253-39972272 Msa0680750:intron 30.0%
!!! TTTTTTGTCAAATAGTCTGG+TGG + chr4_4:39972398-39972417 Msa0680750:intron 30.0%
! TTTTTGTCAAATAGTCTGGT+GGG + chr4_4:39972399-39972418 Msa0680750:intron 30.0%
! GAATTCTTTTTATGTGGTTC+AGG + chr4_4:39972572-39972591 Msa0680750:intron 30.0%
! ACGATATCTAAAATTGTCCT+GGG - chr4_4:39972923-39972942 None:intergenic 30.0%
! TACGATATCTAAAATTGTCC+TGG - chr4_4:39972924-39972943 None:intergenic 30.0%
AAATAGGTCTCAATTTACGT+GGG - chr4_4:39973065-39973084 None:intergenic 30.0%
TAAATAGGTCTCAATTTACG+TGG - chr4_4:39973066-39973085 None:intergenic 30.0%
AAGGATTGAGCTTCTTAAAT+TGG - chr4_4:39973261-39973280 None:intergenic 30.0%
! TATGCACTAGTTATTTCAAC+GGG + chr4_4:39973346-39973365 Msa0680750:intron 30.0%
! TAATTTTCTACATTCGGGAT+AGG + chr4_4:39973792-39973811 Msa0680750:intron 30.0%
TTTCTCCGATTTCAAAATCT+GGG - chr4_4:39973869-39973888 None:intergenic 30.0%
! TTTTCTCCGATTTCAAAATC+TGG - chr4_4:39973870-39973889 None:intergenic 30.0%
! AGACGAAGTGGATATATTTT+TGG + chr4_4:39973989-39974008 Msa0680750:intron 30.0%
ATCATCATAAACATCTTGGA+AGG - chr4_4:39974325-39974344 None:intergenic 30.0%
!! ACTGCTTTAAAAAACACGTA+AGG - chr4_4:39974396-39974415 None:intergenic 30.0%
ATACGAACACGGAAAATTTA+AGG + chr4_4:39974528-39974547 Msa0680750:CDS 30.0%
TTGTCCAATTAATGCTAATC+GGG - chr4_4:39974601-39974620 None:intergenic 30.0%
!! TAGAAATTTCCAGCCATTTT+GGG - chr4_4:39974696-39974715 None:intergenic 30.0%
! ATAGAAATTTCCAGCCATTT+TGG - chr4_4:39974697-39974716 None:intergenic 30.0%
! ATCAAAATTGGTAGTTGCAG+CGG - chr4_4:39967980-39967999 None:intergenic 35.0%
TTGCTTATAATTGTAACCGG+AGG + chr4_4:39968212-39968231 Msa0680750:intron 35.0%
TGCTTATAATTGTAACCGGA+GGG + chr4_4:39968213-39968232 Msa0680750:intron 35.0%
! TGGAAAAGTATGAGTTGTCT+TGG - chr4_4:39968272-39968291 None:intergenic 35.0%
CATTGAGATGTCAAATCTGT+AGG - chr4_4:39968341-39968360 None:intergenic 35.0%
CTACAGATTTGACATCTCAA+TGG + chr4_4:39968339-39968358 Msa0680750:intron 35.0%
CTCAATGGGTGTTAATACAA+TGG + chr4_4:39968354-39968373 Msa0680750:CDS 35.0%
!! AAAAAGGTGTCCCAAAATGA+AGG + chr4_4:39968402-39968421 Msa0680750:CDS 35.0%
GATACTTACCTGTAGATATG+TGG - chr4_4:39968435-39968454 None:intergenic 35.0%
! TATCAATTTTTCCTCGCGAT+TGG + chr4_4:39968836-39968855 Msa0680750:intron 35.0%
! ATCAATTTTTCCTCGCGATT+GGG + chr4_4:39968837-39968856 Msa0680750:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr4_4:39968956-39968975 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr4_4:39968957-39968976 None:intergenic 35.0%
! CAAGTTTAGAACACCATGAA+AGG - chr4_4:39969274-39969293 None:intergenic 35.0%
!!! CTTTTGACTTTTGCTAGACA+AGG + chr4_4:39970013-39970032 Msa0680750:intron 35.0%
TGTAAATACGTGTGTATGCT+TGG + chr4_4:39970103-39970122 Msa0680750:intron 35.0%
GTAAATACGTGTGTATGCTT+GGG + chr4_4:39970104-39970123 Msa0680750:intron 35.0%
AGATATCTCAACATTCACTC+AGG - chr4_4:39970233-39970252 None:intergenic 35.0%
ACTGAAGTCGATCTTTCAAT+AGG + chr4_4:39970680-39970699 Msa0680750:intron 35.0%
GAGGAAAAAAAGATGTAGAG+GGG + chr4_4:39970851-39970870 Msa0680750:intron 35.0%
ATTATCACTAGTAACAGCCA+CGG - chr4_4:39971504-39971523 None:intergenic 35.0%
!! TAATTCTAGCTTATGTGTGC+GGG + chr4_4:39971541-39971560 Msa0680750:intron 35.0%
TCAAGAGAAACCATTTGAGA+TGG + chr4_4:39971590-39971609 Msa0680750:CDS 35.0%
! CAAGAGAAACCATTTGAGAT+GGG + chr4_4:39971591-39971610 Msa0680750:CDS 35.0%
ACACACAGAAATGAATTTGC+TGG + chr4_4:39971650-39971669 Msa0680750:CDS 35.0%
TTAGAGCAAATTTGCATGGT+TGG + chr4_4:39971865-39971884 Msa0680750:intron 35.0%
GTTGGACGTATAATGATCAA+TGG - chr4_4:39971957-39971976 None:intergenic 35.0%
ATAGCTTAGCTTAGCTATCA+GGG - chr4_4:39972497-39972516 None:intergenic 35.0%
TATAGCTTAGCTTAGCTATC+AGG - chr4_4:39972498-39972517 None:intergenic 35.0%
GATAGTATGATATGTGCCTA+TGG + chr4_4:39972866-39972885 Msa0680750:CDS 35.0%
ATGATATGTGCCTATGGTAA+AGG + chr4_4:39972872-39972891 Msa0680750:CDS 35.0%
TGATATGTGCCTATGGTAAA+GGG + chr4_4:39972873-39972892 Msa0680750:CDS 35.0%
! GGGAAATTGCCATATTTTCT+TGG + chr4_4:39972893-39972912 Msa0680750:CDS 35.0%
CTGGGATTACCAAGAAAATA+TGG - chr4_4:39972905-39972924 None:intergenic 35.0%
!! CATATTTTCTTGGTAATCCC+AGG + chr4_4:39972903-39972922 Msa0680750:CDS 35.0%
! ATGCACTAGTTATTTCAACG+GGG + chr4_4:39973347-39973366 Msa0680750:intron 35.0%
TATGTAGATACCTGCAGATT+TGG + chr4_4:39973414-39973433 Msa0680750:intron 35.0%
! TGGACATCAGAAATTTTGAG+AGG - chr4_4:39973529-39973548 None:intergenic 35.0%
AATATTGATGGGAAATGCTG+TGG - chr4_4:39973549-39973568 None:intergenic 35.0%
! AAAAGCAGCCATACTTTTCA+AGG - chr4_4:39973632-39973651 None:intergenic 35.0%
CGATTTCAAAATCTGGGTAT+GGG - chr4_4:39973863-39973882 None:intergenic 35.0%
!!! CCATACCCAGATTTTGAAAT+CGG + chr4_4:39973861-39973880 Msa0680750:intron 35.0%
! TTTTCATTGGGTTTGGGTAT+GGG - chr4_4:39973899-39973918 None:intergenic 35.0%
! ATTTTCATTGGGTTTGGGTA+TGG - chr4_4:39973900-39973919 None:intergenic 35.0%
ATACCCAAACCCAATGAAAA+TGG + chr4_4:39973899-39973918 Msa0680750:intron 35.0%
TACCCAAACCCAATGAAAAT+GGG + chr4_4:39973900-39973919 Msa0680750:intron 35.0%
CATAAACATCTTGGAAGGAA+TGG - chr4_4:39974320-39974339 None:intergenic 35.0%
!! TAGCTTTGATGATACGAACA+CGG + chr4_4:39974517-39974536 Msa0680750:intron 35.0%
GAACACGGAAAATTTAAGGA+GGG + chr4_4:39974532-39974551 Msa0680750:CDS 35.0%
AAATTTAAGGAGGGCAACAA+AGG + chr4_4:39974541-39974560 Msa0680750:CDS 35.0%
AATTTAAGGAGGGCAACAAA+GGG + chr4_4:39974542-39974561 Msa0680750:CDS 35.0%
TTGACCCGATTAGCATTAAT+TGG + chr4_4:39974594-39974613 Msa0680750:CDS 35.0%
!! AGAAATTTCCAGCCATTTTG+GGG - chr4_4:39974695-39974714 None:intergenic 35.0%
! TGGACAAGGACCTTCATTTT+GGG - chr4_4:39968415-39968434 None:intergenic 40.0%
TACCTGTAGATATGTGGACA+AGG - chr4_4:39968429-39968448 None:intergenic 40.0%
TTGAGATTAGGAAGTCCTCT+AGG - chr4_4:39969881-39969900 None:intergenic 40.0%
GTGATTTCGTCGTCAAATTG+TGG - chr4_4:39970771-39970790 None:intergenic 40.0%
! AGATGTAGAGGGGTGATTTT+AGG + chr4_4:39970861-39970880 Msa0680750:intron 40.0%
! CATCGAAGAAGAGTGGTTTT+AGG - chr4_4:39970898-39970917 None:intergenic 40.0%
CTAAAACCACTCTTCTTCGA+TGG + chr4_4:39970896-39970915 Msa0680750:intron 40.0%
TCTCACTAGAAAACTAGAGC+CGG + chr4_4:39970958-39970977 Msa0680750:intron 40.0%
GAGCTATGTGTCATGGATAA+AGG - chr4_4:39971056-39971075 None:intergenic 40.0%
!! AGGACTTTGACTTGTTACAG+AGG + chr4_4:39971164-39971183 Msa0680750:intron 40.0%
GGTACAAAGTAGCAGATAGT+TGG - chr4_4:39971367-39971386 None:intergenic 40.0%
TTATCACTAGTAACAGCCAC+GGG - chr4_4:39971503-39971522 None:intergenic 40.0%
!! AATTCTAGCTTATGTGTGCG+GGG + chr4_4:39971542-39971561 Msa0680750:intron 40.0%
GATCATTATACGTCCAACGA+TGG + chr4_4:39971959-39971978 Msa0680750:CDS 40.0%
CTTGTACTAGTTACCATCGT+TGG - chr4_4:39971975-39971994 None:intergenic 40.0%
GTGAATACGAGTAGAGTTCA+AGG + chr4_4:39972151-39972170 Msa0680750:intron 40.0%
TGGCAATTTCCCTTTACCAT+AGG - chr4_4:39972885-39972904 None:intergenic 40.0%
!! ATTTACGTGGGTGTTGAGTA+CGG - chr4_4:39973053-39973072 None:intergenic 40.0%
! CAATTGATGACCAAATCTGC+AGG - chr4_4:39973427-39973446 None:intergenic 40.0%
ACTCCTTGCCTAAACAAAGA+TGG + chr4_4:39973577-39973596 Msa0680750:CDS 40.0%
CTCCTTGCCTAAACAAAGAT+GGG + chr4_4:39973578-39973597 Msa0680750:CDS 40.0%
! TTCCCATCTTTGTTTAGGCA+AGG - chr4_4:39973583-39973602 None:intergenic 40.0%
! TTGGCTTCCCATCTTTGTTT+AGG - chr4_4:39973588-39973607 None:intergenic 40.0%
AAGCCAATAGTCGTTTCCAA+GGG + chr4_4:39973601-39973620 Msa0680750:CDS 40.0%
ATTCCCTTGGAAACGACTAT+TGG - chr4_4:39973607-39973626 None:intergenic 40.0%
!! ACTTTTCAAGGCAATTCCCT+TGG - chr4_4:39973620-39973639 None:intergenic 40.0%
GGGAATTGCCTTGAAAAGTA+TGG + chr4_4:39973621-39973640 Msa0680750:CDS 40.0%
ATTCGGGATAGGTTTGAGTA+TGG + chr4_4:39973803-39973822 Msa0680750:intron 40.0%
TTCGGGATAGGTTTGAGTAT+GGG + chr4_4:39973804-39973823 Msa0680750:intron 40.0%
GATAGGTTTGAGTATGGGTT+CGG + chr4_4:39973809-39973828 Msa0680750:intron 40.0%
ATAGGTTTGAGTATGGGTTC+GGG + chr4_4:39973810-39973829 Msa0680750:intron 40.0%
CCGATTTCAAAATCTGGGTA+TGG - chr4_4:39973864-39973883 None:intergenic 40.0%
ACCCAAACCCAATGAAAATG+GGG + chr4_4:39973901-39973920 Msa0680750:intron 40.0%
! TCCCCATTTTCATTGGGTTT+GGG - chr4_4:39973905-39973924 None:intergenic 40.0%
! TTCCCCATTTTCATTGGGTT+TGG - chr4_4:39973906-39973925 None:intergenic 40.0%
! GGGTTTTCCCCATTTTCATT+GGG - chr4_4:39973911-39973930 None:intergenic 40.0%
AAAACCCGTCAAATTGGGTT+TGG + chr4_4:39973924-39973943 Msa0680750:intron 40.0%
ATATCCACTTCGTCTAAGCA+TGG - chr4_4:39973984-39974003 None:intergenic 40.0%
! GTGTTTGAGAGTGCATTGAT+AGG + chr4_4:39974192-39974211 Msa0680750:intron 40.0%
CGAACACGGAAAATTTAAGG+AGG + chr4_4:39974531-39974550 Msa0680750:CDS 40.0%
AAGGGCTATAACATGGAGAA+TGG + chr4_4:39974560-39974579 Msa0680750:CDS 40.0%
ATGATGAATACGCACATTCC+TGG + chr4_4:39974626-39974645 Msa0680750:CDS 40.0%
ATTTACTACCCCAAAATGGC+TGG + chr4_4:39974684-39974703 Msa0680750:three_prime_UTR 40.0%
TTGCAGCGGAATGGACAATA+AGG - chr4_4:39967966-39967985 None:intergenic 45.0%
! AATTGGTAGTTGCAGCGGAA+TGG - chr4_4:39967975-39967994 None:intergenic 45.0%
CAGTAACAATGTACACCCTC+CGG - chr4_4:39968231-39968250 None:intergenic 45.0%
! GTGGACAAGGACCTTCATTT+TGG - chr4_4:39968416-39968435 None:intergenic 45.0%
GTCCTTGTCCACATATCTAC+AGG + chr4_4:39968424-39968443 Msa0680750:CDS 45.0%
ATGTTATAAGCCCAATCGCG+AGG - chr4_4:39968850-39968869 None:intergenic 45.0%
TCCTTGTTCACCCTACAATC+TGG + chr4_4:39969817-39969836 Msa0680750:intron 45.0%
CCTTGTTCACCCTACAATCT+GGG + chr4_4:39969818-39969837 Msa0680750:intron 45.0%
GAGTCAAATGCTTGACACAG+TGG + chr4_4:39970391-39970410 Msa0680750:intron 45.0%
TTTGAATTCGCGTCTTGTCG+CGG - chr4_4:39970719-39970738 None:intergenic 45.0%
! GTGTTGTTAGTCGTCTTGTG+CGG - chr4_4:39970744-39970763 None:intergenic 45.0%
CTTCATCCATCGAAGAAGAG+TGG - chr4_4:39970905-39970924 None:intergenic 45.0%
CACTCTTCTTCGATGGATGA+AGG + chr4_4:39970903-39970922 Msa0680750:intron 45.0%
CCTTAACGAGCTATGTGTCA+TGG - chr4_4:39971063-39971082 None:intergenic 45.0%
CCATGACACATAGCTCGTTA+AGG + chr4_4:39971060-39971079 Msa0680750:intron 45.0%
! CACAAGCTTAGAGCTTTGAC+CGG + chr4_4:39971117-39971136 Msa0680750:intron 45.0%
AAGTCAAAGCTCTGCACTAC+CGG - chr4_4:39971139-39971158 None:intergenic 45.0%
!! GCAGAGCTTTGACTTGGTTT+AGG + chr4_4:39971144-39971163 Msa0680750:intron 45.0%
TATCACTAGTAACAGCCACG+GGG - chr4_4:39971502-39971521 None:intergenic 45.0%
GATTGACGACCCATCTCAAA+TGG - chr4_4:39971603-39971622 None:intergenic 45.0%
! TGGGTCGTCAATCTCTAGAA+AGG + chr4_4:39971610-39971629 Msa0680750:CDS 45.0%
ACAAGCAAAGATCCGTTTCC+TGG + chr4_4:39971990-39972009 Msa0680750:CDS 45.0%
CCTTCAATCCAACCAGGAAA+CGG - chr4_4:39972005-39972024 None:intergenic 45.0%
CTTTGACCTTCAATCCAACC+AGG - chr4_4:39972011-39972030 None:intergenic 45.0%
CTGGTTGGATTGAAGGTCAA+AGG + chr4_4:39972009-39972028 Msa0680750:CDS 45.0%
GAAGCCAATAGTCGTTTCCA+AGG + chr4_4:39973600-39973619 Msa0680750:CDS 45.0%
TCTAACAAACCTCAAGTGGC+AGG - chr4_4:39973681-39973700 None:intergenic 45.0%
TCGGTCTAACAAACCTCAAG+TGG - chr4_4:39973685-39973704 None:intergenic 45.0%
TAGGTTTGAGTATGGGTTCG+GGG + chr4_4:39973811-39973830 Msa0680750:intron 45.0%
! CGGGTTTTCCCCATTTTCAT+TGG - chr4_4:39973912-39973931 None:intergenic 45.0%
ATGGGGAAAACCCGTCAAAT+TGG + chr4_4:39973918-39973937 Msa0680750:intron 45.0%
TGGGGAAAACCCGTCAAATT+GGG + chr4_4:39973919-39973938 Msa0680750:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG - chr4_4:39973931-39973950 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG - chr4_4:39973932-39973951 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG + chr4_4:39973929-39973948 Msa0680750:intron 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG + chr4_4:39973930-39973949 Msa0680750:intron 45.0%
!! AAATTGGGTTTGGTTCGGGT+AGG + chr4_4:39973934-39973953 Msa0680750:intron 45.0%
GGCAACAAAGGGCTATAACA+TGG + chr4_4:39974553-39974572 Msa0680750:CDS 45.0%
ATTGCATACTTGACGAGACC+AGG - chr4_4:39974647-39974666 None:intergenic 45.0%
!!! TTTTTTTTTATTTTTTTTCT+GGG - chr4_4:39968457-39968476 None:intergenic 5.0%
!!! TTTTTTTTTTATTTTTTTTC+TGG - chr4_4:39968458-39968477 None:intergenic 5.0%
!!! TAGATTATAAATATTTTTTT+TGG - chr4_4:39969617-39969636 None:intergenic 5.0%
!! TATATCAAAATTTAAATTAA+GGG + chr4_4:39972690-39972709 Msa0680750:intron 5.0%
CCCAGATTGTAGGGTGAACA+AGG - chr4_4:39969821-39969840 None:intergenic 50.0%
! CAACCTAGTTCTCGACCTAG+AGG + chr4_4:39969863-39969882 Msa0680750:intron 50.0%
AGTCCTCTAGGTCGAGAACT+AGG - chr4_4:39969869-39969888 None:intergenic 50.0%
GTGTATGCTTGGGTGTTCGT+AGG + chr4_4:39970114-39970133 Msa0680750:intron 50.0%
CACAGTGGATCTCACTAGAG+AGG + chr4_4:39970406-39970425 Msa0680750:intron 50.0%
! ATCCGGAAGCATGGGCATTT+CGG - chr4_4:39970618-39970637 None:intergenic 50.0%
! GGTAGTGCAGAGCTTTGACT+TGG + chr4_4:39971138-39971157 Msa0680750:intron 50.0%
TTATGTGTGCGGGGAGACTA+AGG + chr4_4:39971551-39971570 Msa0680750:CDS 50.0%
GCAAAGATCCGTTTCCTGGT+TGG + chr4_4:39971994-39972013 Msa0680750:CDS 50.0%
CCGTTTCCTGGTTGGATTGA+AGG + chr4_4:39972002-39972021 Msa0680750:CDS 50.0%
! TCGATATGTCCTGCCACTTG+AGG + chr4_4:39973669-39973688 Msa0680750:CDS 50.0%
TTTGAGTATGGGTTCGGGGT+GGG + chr4_4:39973815-39973834 Msa0680750:intron 50.0%
!! TTGGTTCGGGTAGGTAACCA+CGG + chr4_4:39973943-39973962 Msa0680750:intron 50.0%
GGCAACAAAACTCATACCCG+TGG - chr4_4:39973963-39973982 None:intergenic 50.0%
GTTGCCATGCTTAGACGAAG+TGG + chr4_4:39973977-39973996 Msa0680750:intron 50.0%
CACCGAAATGCCCATGCTTC+CGG + chr4_4:39970613-39970632 Msa0680750:intron 55.0%
! CGTTGCAGATCCGGAAGCAT+GGG - chr4_4:39970626-39970645 None:intergenic 55.0%
ACGTTGCAGATCCGGAAGCA+TGG - chr4_4:39970627-39970646 None:intergenic 55.0%
GGGCATCAACGTTGCAGATC+CGG - chr4_4:39970635-39970654 None:intergenic 55.0%
ATTTCACCTTCCCATCCCCG+TGG + chr4_4:39971484-39971503 Msa0680750:intron 55.0%
CTAGTAACAGCCACGGGGAT+GGG - chr4_4:39971497-39971516 None:intergenic 55.0%
ACTAGTAACAGCCACGGGGA+TGG - chr4_4:39971498-39971517 None:intergenic 55.0%
CGGGGAGACTAAGGAAGGAA+AGG + chr4_4:39971560-39971579 Msa0680750:CDS 55.0%
GTTTGAGTATGGGTTCGGGG+TGG + chr4_4:39973814-39973833 Msa0680750:intron 55.0%
CTGGGTATGGGACGAGTAAC+AGG - chr4_4:39973851-39973870 None:intergenic 55.0%
! TGGTTCGGGTAGGTAACCAC+GGG + chr4_4:39973944-39973963 Msa0680750:intron 55.0%
TAACAGCCACGGGGATGGGA+AGG - chr4_4:39971493-39971512 None:intergenic 60.0%
GTGTGCGGGGAGACTAAGGA+AGG + chr4_4:39971555-39971574 Msa0680750:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 39967944 39974883 39967944 ID=Msa0680750;Name=Msa0680750
chr4_4 mRNA 39967944 39974883 39967944 ID=Msa0680750-mRNA-1;Parent=Msa0680750;Name=Msa0680750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=2|1|1|1|0.71|0.62|8|210|386
chr4_4 exon 39967944 39968004 39967944 ID=Msa0680750-mRNA-1:exon:9516;Parent=Msa0680750-mRNA-1
chr4_4 exon 39968345 39968445 39968345 ID=Msa0680750-mRNA-1:exon:9517;Parent=Msa0680750-mRNA-1
chr4_4 exon 39971550 39971754 39971550 ID=Msa0680750-mRNA-1:exon:9518;Parent=Msa0680750-mRNA-1
chr4_4 exon 39971869 39972030 39971869 ID=Msa0680750-mRNA-1:exon:9519;Parent=Msa0680750-mRNA-1
chr4_4 exon 39972859 39972940 39972859 ID=Msa0680750-mRNA-1:exon:9520;Parent=Msa0680750-mRNA-1
chr4_4 exon 39973421 39973690 39973421 ID=Msa0680750-mRNA-1:exon:9521;Parent=Msa0680750-mRNA-1
chr4_4 exon 39974288 39974415 39974288 ID=Msa0680750-mRNA-1:exon:9522;Parent=Msa0680750-mRNA-1
chr4_4 exon 39974520 39974883 39974520 ID=Msa0680750-mRNA-1:exon:9523;Parent=Msa0680750-mRNA-1
chr4_4 five_prime_UTR 39967944 39967945 39967944 ID=Msa0680750-mRNA-1:five_prime_utr;Parent=Msa0680750-mRNA-1
chr4_4 CDS 39967946 39968004 39967946 ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1
chr4_4 CDS 39968345 39968445 39968345 ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1
chr4_4 CDS 39971550 39971754 39971550 ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1
chr4_4 CDS 39971869 39972030 39971869 ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1
chr4_4 CDS 39972859 39972940 39972859 ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1
chr4_4 CDS 39973421 39973690 39973421 ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1
chr4_4 CDS 39974288 39974415 39974288 ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1
chr4_4 CDS 39974520 39974673 39974520 ID=Msa0680750-mRNA-1:cds;Parent=Msa0680750-mRNA-1
chr4_4 three_prime_UTR 39974674 39974883 39974674 ID=Msa0680750-mRNA-1:three_prime_utr;Parent=Msa0680750-mRNA-1
Gene Sequence

>Msa0680750

ATGTTTGAAGAGATAGACCTTATTGTCCATTCCGCTGCAACTACCAATTTTGATGAAAGATTTGACATCTCAATGGGTGTTAATACAATGGGAGCTTTACATGTCTTAAACATCGCAAAAAGGTGTCCCAAAATGAAGGTCCTTGTCCACATATCTACAGCTTATGTGTGCGGGGAGACTAAGGAAGGAAAGGCAATATTTCAAGAGAAACCATTTGAGATGGGTCGTCAATCTCTAGAAAGGTCTTCAAAATTAGACATACACACAGAAATGAATTTGCTGGAGAAAAAATTAGATGAATTACAAGCAATGAATGTGGATGAAAAAACACTCAAGTATGCGATGAAAAATTATGGAATTGAAAGAGCAAATTTGCATGGTTGGCCAAACACATATGTATTCACAAAAGCAATGGGAGAGATGCTTTTAGTGCATCATAAAGATAATGTACCATTGATCATTATACGTCCAACGATGGTAACTAGTACAAGCAAAGATCCGTTTCCTGGTTGGATTGAAGGTCAAAGAACTGTTGATAGTATGATATGTGCCTATGGTAAAGGGAAATTGCCATATTTTCTTGGTAATCCCAGGACAATTTTAGATATCATACCTGCAGATTTGGTCATCAATTGTGTGATTGCAGCAATTGTTATTGATTCAAATCAAGCTCCTAAAAATTTCATCTACCATGTTTCTTCTTCATTAAGAAATCCTCTCAAAATTTCTGATGTCCACAGCATTTCCCATCAATATTTCATGAAAACTCCTTGCCTAAACAAAGATGGGAAGCCAATAGTCGTTTCCAAGGGAATTGCCTTGAAAAGTATGGCTGCTTTTAACATTTATACAGAGACTCGATATGTCCTGCCACTTGAGGTCTTAAATTTGGTGAACAAACTGATTTGCCATTCCTTCCAAGATGTTTATGATGATAACTACAAGAAAATACGAATGGTGAAGCGACTTGCAAAACTATACAAACCTTACGTGTTTTTTAAAGCAGTCTTTGATGATACGAACACGGAAAATTTAAGGAGGGCAACAAAGGGCTATAACATGGAGAATGGAATGCTAGAATTTGACCCGATTAGCATTAATTGGACAAACTACATGATGAATACGCACATTCCTGGTCTCGTCAAGTATGCAATGAAATAA

Protein sequence

>Msa0680750

MFEEIDLIVHSAATTNFDERFDISMGVNTMGALHVLNIAKRCPKMKVLVHISTAYVCGETKEGKAIFQEKPFEMGRQSLERSSKLDIHTEMNLLEKKLDELQAMNVDEKTLKYAMKNYGIERANLHGWPNTYVFTKAMGEMLLVHHKDNVPLIIIRPTMVTSTSKDPFPGWIEGQRTVDSMICAYGKGKLPYFLGNPRTILDIIPADLVINCVIAAIVIDSNQAPKNFIYHVSSSLRNPLKISDVHSISHQYFMKTPCLNKDGKPIVVSKGIALKSMAAFNIYTETRYVLPLEVLNLVNKLICHSFQDVYDDNYKKIRMVKRLAKLYKPYVFFKAVFDDTNTENLRRATKGYNMENGMLEFDPISINWTNYMMNTHIPGLVKYAMK*