AlfalfaGEDB | Msa1355130

M. sativa cultivar zhongmu-4 / Msa1355130

KEGG: K00454|K15718
GO: -
PFAM: PF01477.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355130	XP_003627196.1	90.023	862	20	3	3	798	4	865	0.0	1562

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355130	sp\|P38414\|LOX1_LENCU	74.074	864	150	5	7	798	5	866	0.0	1308

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355130	G7LIZ2	90.023	862	20	3	3	798	4	865	0.0	1562

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0372450	Msa1355130	0.888927	3.822092e-73	-8.615850e-47
Msa0466650	Msa1355130	0.894524	2.273791e-75	-8.615850e-47
Msa0512820	Msa1355130	0.896395	3.845919e-76	-8.615850e-47
Msa1147200	Msa1355130	0.809215	2.112522e-50	-8.615850e-47
Msa1179130	Msa1355130	0.896123	4.990779e-76	-8.615850e-47
Msa1179150	Msa1355130	0.994223	1.580558e-205	-8.615850e-47
Msa1275880	Msa1355130	0.900242	8.912955e-78	-8.615850e-47
Msa1275920	Msa1355130	0.875073	4.105386e-68	-8.615850e-47
Msa1314070	Msa1355130	0.891941	2.507508e-74	-8.615850e-47
Msa1314090	Msa1355130	0.896372	3.931199e-76	-8.615850e-47

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1355130	MtrunA17_Chr8g0343011	90.023	862	20	3	3	798	4	865	1562
Msa1355130	MtrunA17_Chr8g0342951	77.855	867	119	5	3	798	4	868	1355
Msa1355130	MtrunA17_Chr8g0342971	75.000	868	142	6	4	798	5	870	1321
Msa1355130	MtrunA17_Chr8g0344211	73.587	867	156	6	3	798	4	868	1304
Msa1355130	MtrunA17_Chr8g0342891	71.034	870	167	5	4	798	2	861	1270
Msa1355130	MtrunA17_Chr8g0342921	71.297	871	175	8	1	798	1	869	1262
Msa1355130	MtrunA17_Chr8g0342901	66.667	861	179	10	8	798	6	828	1140
Msa1355130	MtrunA17_Chr8g0342931	74.400	750	121	3	120	798	1	750	1137
Msa1355130	MtrunA17_Chr2g0329911	63.825	868	232	5	3	798	4	861	1115
Msa1355130	MtrunA17_Chr8g0342881	61.111	864	256	6	6	798	2	856	1078

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1355130	AT1G55020.1	50.750	867	321	11	12	798	19	859	0.0	849
Msa1355130	AT3G22400.1	49.886	876	326	12	13	798	34	886	0.0	837
Msa1355130	AT1G72520.1	41.054	816	403	11	58	798	114	926	0.0	610
Msa1355130	AT1G17420.1	41.350	815	401	12	58	798	108	919	0.0	603
Msa1355130	AT3G45140.1	39.024	820	403	20	58	798	95	896	7.97e-179	536
Msa1355130	AT3G45140.2	40.448	759	365	18	119	798	4	754	2.75e-176	525
Msa1355130	AT1G67560.1	38.020	818	412	16	65	798	111	917	1.63e-168	511

Showing 1 to 7 of 7 entries

Previous1Next

Find 464 sgRNAs with CRISPR-Local

Find 946 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGAGCGCAAGGAAT+GGG	0.491449	tig0014547:-13688	Msa1355130:CDS
AAAAGGAGAGCGTAAGGAAT+GGG	0.499065	tig0014547:-22177	Msa1355130:five_prime_UTR
AAACAAAGTGGATGGATCCA+TGG	0.532708	tig0014547:+22421	Msa1355130:intergenic
AAACAAAGTGGATGGATCCA+TGG	0.554216	tig0014547:+13934	Msa1355130:intergenic
AAAGAAGCTGGCTGAAATTG+AGG	0.500992	tig0014547:-19708	Msa1355130:five_prime_UTR
AAAGTGTATGGCATCTTCAC+AGG	0.525342	tig0014547:+19635	Msa1355130:intergenic
AAATGTCTGCTGTTGCATAT+AGG	0.453778	tig0014547:-11908	Msa1355130:CDS
AAATGTCTGCTGTTGCATAT+AGG	0.453778	tig0014547:-20486	Msa1355130:five_prime_UTR
AACAAACAGACACCTTAGCA+CGG	0.647155	tig0014547:-12063	Msa1355130:CDS
AACAAACAGACACCTTAGCA+CGG	0.647155	tig0014547:-20641	Msa1355130:five_prime_UTR

Showing 1 to 10 of 464 entries

Previous1 2 3 4 5…47Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTACAGGTATCATCAACA+GGG	-	tig0014547:10836-10855	Msa1355130:three_prime_UTR	30.0%
GTTGATGCAAAAAAATGTGT+TGG	-	tig0014547:10884-10903	Msa1355130:three_prime_UTR	30.0%
TAAAGTCCATCTGGTATAAT+TGG	-	tig0014547:10929-10948	Msa1355130:three_prime_UTR	30.0%
TCAATTTAAGAGCCACATTA+CGG	+	tig0014547:11021-11040	Msa1355130:intergenic	30.0%
ATAGTTAGATCTCATAAGTG+GGG	+	tig0014547:11683-11702	Msa1355130:intergenic	30.0%
TTATAGAGGTTACTTATGCT+GGG	+	tig0014547:11747-11766	Msa1355130:intergenic	30.0%
ATTATAGAGGTTACTTATGC+TGG	+	tig0014547:11748-11767	Msa1355130:intergenic	30.0%
GAAGAATTGAAGACTTTAAG+AGG	-	tig0014547:12393-12412	Msa1355130:CDS	30.0%
TTACGATGTGTACAATGATT+TGG	-	tig0014547:12458-12477	Msa1355130:CDS	30.0%
TACGATGTGTACAATGATTT+GGG	-	tig0014547:12459-12478	Msa1355130:CDS	30.0%

Showing 1 to 10 of 946 entries

Previous1 2 3 4 5…95Next

Chromosome	Type	Strat	End	Strand	Name
tig0014547	gene	10665	23956	10665	ID=Msa1355130;Name=Msa1355130
tig0014547	mRNA	10665	23956	10665	ID=Msa1355130-mRNA-1;Parent=Msa1355130;Name=Msa1355130-mRNA-1;_AED=0.14;_eAED=0.14;_QI=2826\|0.77\|0.68\|1\|0.83\|0.73\|19\|319\|798
tig0014547	exon	10665	11740	10665	ID=Msa1355130-mRNA-1:exon:9342;Parent=Msa1355130-mRNA-1
tig0014547	exon	11861	12086	11861	ID=Msa1355130-mRNA-1:exon:9341;Parent=Msa1355130-mRNA-1
tig0014547	exon	12292	12514	12292	ID=Msa1355130-mRNA-1:exon:9340;Parent=Msa1355130-mRNA-1
tig0014547	exon	12606	12713	12606	ID=Msa1355130-mRNA-1:exon:9339;Parent=Msa1355130-mRNA-1
tig0014547	exon	12804	12889	12804	ID=Msa1355130-mRNA-1:exon:9338;Parent=Msa1355130-mRNA-1
tig0014547	exon	12984	13151	12984	ID=Msa1355130-mRNA-1:exon:9337;Parent=Msa1355130-mRNA-1
tig0014547	exon	13179	13289	13179	ID=Msa1355130-mRNA-1:exon:9336;Parent=Msa1355130-mRNA-1
tig0014547	exon	13547	13787	13547	ID=Msa1355130-mRNA-1:exon:9335;Parent=Msa1355130-mRNA-1
tig0014547	exon	13923	14158	13923	ID=Msa1355130-mRNA-1:exon:9334;Parent=Msa1355130-mRNA-1
tig0014547	exon	15565	15798	15565	ID=Msa1355130-mRNA-1:exon:9333;Parent=Msa1355130-mRNA-1
tig0014547	exon	19489	20327	19489	ID=Msa1355130-mRNA-1:exon:9332;Parent=Msa1355130-mRNA-1
tig0014547	exon	20439	20702	20439	ID=Msa1355130-mRNA-1:exon:9331;Parent=Msa1355130-mRNA-1
tig0014547	exon	20796	21100	20796	ID=Msa1355130-mRNA-1:exon:9330;Parent=Msa1355130-mRNA-1
tig0014547	exon	21192	21299	21192	ID=Msa1355130-mRNA-1:exon:9329;Parent=Msa1355130-mRNA-1
tig0014547	exon	21392	21477	21392	ID=Msa1355130-mRNA-1:exon:9328;Parent=Msa1355130-mRNA-1
tig0014547	exon	21566	21871	21566	ID=Msa1355130-mRNA-1:exon:9327;Parent=Msa1355130-mRNA-1
tig0014547	exon	22036	22276	22036	ID=Msa1355130-mRNA-1:exon:9326;Parent=Msa1355130-mRNA-1
tig0014547	exon	22359	22645	22359	ID=Msa1355130-mRNA-1:exon:9325;Parent=Msa1355130-mRNA-1
tig0014547	exon	23560	23956	23560	ID=Msa1355130-mRNA-1:exon:9324;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	23560	23956	23560	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	22359	22645	22359	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	22036	22276	22036	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	21566	21871	21566	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	21392	21477	21392	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	21192	21299	21192	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	20796	21100	20796	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	20439	20702	20439	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	five_prime_UTR	19496	20327	19496	ID=Msa1355130-mRNA-1:five_prime_utr;Parent=Msa1355130-mRNA-1
tig0014547	CDS	19489	19495	19489	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	15565	15798	15565	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	13923	14158	13923	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	13547	13787	13547	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	13179	13289	13179	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	12984	13151	12984	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	12804	12889	12804	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	12606	12713	12606	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	12292	12514	12292	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	11861	12086	11861	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	CDS	10984	11740	10984	ID=Msa1355130-mRNA-1:cds;Parent=Msa1355130-mRNA-1
tig0014547	three_prime_UTR	10665	10983	10665	ID=Msa1355130-mRNA-1:three_prime_utr;Parent=Msa1355130-mRNA-1

Gene Sequence

>Msa1355130

ATGTATGGAATTACAAGCATCATCAACAGGGGTGAAAAGTTGAAGGGAACTGTGGTGTTGATGCAAAAGAATGTGTTGGATGTGAATGAACTCACTTCAATTAAAAGTAACCCAGTTGGTGGTATAATTGGTGGTGCCATTAGTGGTGCCTTTGGTGCTGTTGGTACTGTTCTTGACACTGCTACTGCCTTCTTAGGCCGTAATGTGGCTCTTAAATTGATTAGTGCTACAAGTGCTGATGGAAGTGGAAAAGGAAAAGTGGGAAAGCAAACATTCTTGGAAGGTGTTATTACCTCCATACCAACATTGGGAGACAAACAAAATGCTTACAGTATTCATTTTGAATGGGGCAGTGACATGGGAATTCCAGGAGCATTCTATATTGAGAATTTTTTGCAACATGAGTTCTTCCTTGTGAGTTTGACACTTGAAGATGTTCCAAACCATGGATCCATCCACTTTGTTTGCAACTCATGGACATACCTTCCAAGTGAAACACCGGCTCCATTGGTGTACTATAGACAAGAAGAGTTGAAGACTTTAAGAGGAGATGGAAAAGGAGAGCGCAAGGAATGGGAGAGGATCTACGATTACGATGTGTACAATGATTTGGGTGAGCCTGACTCAAAACCTACCTTGGGTCGTCCAGTTCTTGGAGGATCGAGCACCTTGCCTTACCCTCGAAGGGGGAGAACAGGCAGAAAACCAGCTAAAAAAGATCCTAAGAGTGAGAGTCGGAGCGGCTTTGTTTACCTTCCAAGAGATGAATCATTTGGACACACAAAGTCTTCAGACTTTCTTGCTTTCATACTCAAATCAGCATCTCAAATTAGCAAAGAGTTTAACAACTTTGAAGATGTGCGGTCACTTTACGATGGTGGAATCAAGCTACCTACCAATTTTCTTAGCAACGTTAGCCCAATACCATTGTTCACGGAACTTTTTCGATCTGATGGTGCATCAACCCTTAAGTTTTCACCACCTAAAGTGGTTCAAGTTGATCATTCTGCATGGATGACTGATGAGGAATTTGCAAGGGAGATGATTGCTGGAGTGAATCCACACATCATCAAAAAACTCATGGAGTTCCCACATAAGAGCAAGCTAGATAGCCAAAAATATGGAGATAACACCAGCACCATAACCAAAGAACAATTGGAGCCAAACATGGGTGGAGTCACTGTAGAACAGGCTATCCAAAACCACAAACTATACATCCTTGATCACTATGACATAGTATATCCATATTTGAGGAAAATAAATGCAACTGAGACAAAGGCCTATGCTGCTAGAACCATCCTTTTCTTGCAAAATGATGGAACTTTGAAGCCATTGGCCATTGAACTAAGTAAGCCACATCCTCAAGATGATAGTTATGGACCTGTTAGTGATGTTTACTTGCCTGCAAGTGAAGCAACAAACAGACACCTTAGCACGGTTCACCCTGTCCACAAACTTTTACTTCCTCATTACCGTGACACAATGAACATAAATTCACTTGCACGGAATGTCCTCGTCAATGCTGAGGGTATTATAGAATCAACATTCTTGTGGGGAGGATATGCTTTGGAAATGTCTGCTGTTGCATATAGGGATTGGGTTTTCACTGAGCAAGGGCTACCTAATGACCTACTCAAAAGAGGAGTGGCTGTTGAGGATCCAGCTTCACCACACGGCATTCGCCTTTTGATCGAGGACTATCCTTATGCTTCGGATGGACTAGAGATATGGGCTGCTATCAAGACATGGGTTGGAGAATATGTGAATTTCTACTACAAATCAGATGCTGACATTGCACAAGATGCTGAACTCCAAGCATTCTGGAAGGAACTTGTAGAGGTGGGTCATGGTGACTTAAAGAATGCCACATGGTGGTTTAAGATGCAAACTCGTGCGGAGTTGATCGAAGCTTCCACCATCCTTATATGGATTGCTTCAGCACTTCATGCAGCTGTTAATTTCGGACAATACCCATATGGAGGATACATCCTTAACCGACCAACTAAGAGCAGGAGATTCATGCCTGAGAAAGGATCACCCGAGTATGCCGAGCTTTCTAAGGACTACCAGAAGGCGTATTTGAAGACAATCACACCCAAGAGTGATACCCTTACAGACCTTACCATTATAGAGGTCTTGTCAAGGCATGCTTCTGATGAGCAATACCTCGGAGAGAGAATCGAAGGCGATCTTTGGACTTCTGATGCACAGCCAAAAGAGGCCTACAAGAAGTTTGCAAGGAAGTTGGCTGAAATTGAGGAAAAGCTAGTTAAAAGGAATGCCGATGAGTCATTGAGAAACCGATACGGGCCTGTGAAGATGCCATACACTCTGCTTTATCCTTCCAGTGAGGAGGGATTGACTTGCAGAGGTATTCCCAACAGTGTCTCCATCTAG

Protein sequence

>Msa1355130

MYGITSIINRGEKLKGTVVLMQKNVLDVNELTSIKSNPVGGIIGGAISGAFGAVGTVLDTATAFLGRNVALKLISATSADGSGKGKVGKQTFLEGVITSIPTLGDKQNAYSIHFEWGSDMGIPGAFYIENFLQHEFFLVSLTLEDVPNHGSIHFVCNSWTYLPSETPAPLVYYRQEELKTLRGDGKGERKEWERIYDYDVYNDLGEPDSKPTLGRPVLGGSSTLPYPRRGRTGRKPAKKDPKSESRSGFVYLPRDESFGHTKSSDFLAFILKSASQISKEFNNFEDVRSLYDGGIKLPTNFLSNVSPIPLFTELFRSDGASTLKFSPPKVVQVDHSAWMTDEEFAREMIAGVNPHIIKKLMEFPHKSKLDSQKYGDNTSTITKEQLEPNMGGVTVEQAIQNHKLYILDHYDIVYPYLRKINATETKAYAARTILFLQNDGTLKPLAIELSKPHPQDDSYGPVSDVYLPASEATNRHLSTVHPVHKLLLPHYRDTMNINSLARNVLVNAEGIIESTFLWGGYALEMSAVAYRDWVFTEQGLPNDLLKRGVAVEDPASPHGIRLLIEDYPYASDGLEIWAAIKTWVGEYVNFYYKSDADIAQDAELQAFWKELVEVGHGDLKNATWWFKMQTRAELIEASTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRFMPEKGSPEYAELSKDYQKAYLKTITPKSDTLTDLTIIEVLSRHASDEQYLGERIEGDLWTSDAQPKEAYKKFARKLAEIEEKLVKRNADESLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSVSI*