AlfalfaGEDB | Msa1358350

M. sativa cultivar zhongmu-4 / Msa1358350

KEGG: K07375
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464
PFAM: PF00091.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358350	XP_003630513.1	99.551	445	2	0	1	445	1	445	0.0	934

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358350	sp\|P12459\|TBB1_SOYBN	96.288	431	16	0	1	431	1	431	0.0	848

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358350	G7LHC6	99.551	445	2	0	1	445	1	445	0.0	934

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0096670	Msa1358350	0.805920	1.057503e-49	-8.615850e-47
Msa0340290	Msa1358350	0.801401	9.163902e-49	-8.615850e-47
Msa0561120	Msa1358350	0.812457	4.198417e-51	-8.615850e-47
Msa0571480	Msa1358350	0.811954	5.407385e-51	-8.615850e-47
Msa0660310	Msa1358350	0.853994	1.653594e-61	-8.615850e-47
Msa0702660	Msa1358350	0.800878	1.172267e-48	-8.615850e-47
Msa0930780	Msa1358350	0.822524	2.262652e-53	-8.615850e-47
Msa0948250	Msa1358350	0.801396	9.184332e-49	-8.615850e-47
Msa1200370	Msa1358350	0.803663	3.130539e-49	-8.615850e-47
Msa1274280	Msa1358350	0.805693	1.180271e-49	-8.615850e-47

Showing 1 to 10 of 12 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1358350	MtrunA17_Chr8g0386781	99.551	445	2	0	1	445	1	445	934
Msa1358350	MtrunA17_Chr2g0292921	92.093	430	34	0	1	430	1	430	824
Msa1358350	MtrunA17_Chr7g0255791	92.326	430	33	0	1	430	1	430	823
Msa1358350	MtrunA17_Chr3g0142731	92.791	430	29	1	1	428	1	430	822
Msa1358350	MtrunA17_Chr4g0051631	91.860	430	35	0	1	430	1	430	821
Msa1358350	MtrunA17_Chr4g0008401	90.698	430	40	0	1	430	1	430	817
Msa1358350	MtrunA17_Chr4g0008361	90.698	430	40	0	1	430	1	430	816
Msa1358350	MtrunA17_Chr1g0203181	91.395	430	37	0	1	430	1	430	816
Msa1358350	MtrunA17_Chr4g0007371	90.509	432	39	1	1	430	1	432	813
Msa1358350	MtrunA17_Chr8g0393021	88.262	443	51	1	1	442	1	443	806

Showing 1 to 10 of 20 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1358350	AT5G12250.1	91.860	430	35	0	1	430	1	430	823
Msa1358350	AT5G62690.1	91.628	430	36	0	1	430	1	430	820
Msa1358350	AT5G62700.1	91.628	430	36	0	1	430	1	430	820
Msa1358350	AT5G23860.2	91.628	430	36	0	1	430	1	430	818
Msa1358350	AT5G23860.1	91.628	430	36	0	1	430	1	430	818
Msa1358350	AT1G75780.1	91.415	431	36	1	1	430	1	431	818
Msa1358350	AT2G29550.1	91.395	430	37	0	1	430	1	430	815
Msa1358350	AT4G20890.1	91.355	428	37	0	1	428	1	428	814
Msa1358350	AT5G44340.1	90.698	430	40	0	1	430	1	430	814
Msa1358350	AT1G20010.1	90.255	431	41	1	1	430	1	431	810

Showing 1 to 10 of 19 entries

Previous1 2Next

Find 118 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGCTGGTAATAAT+TGG	0.203839	tig0016232:-5065	Msa1358350:CDS
AAAGGTTTCTGATACCGTGG+TGG	0.730334	tig0016232:-3389	Msa1358350:CDS
AAAGTCAACATCATTCTATC+TGG	0.375155	tig0016232:+3430	Msa1358350:intergenic
AAATGGAGCTGGTAATAATT+GGG	0.455480	tig0016232:-5064	Msa1358350:CDS
AACAGAGAGAGTTGCATTGT+AGG	0.476137	tig0016232:+3363	Msa1358350:intergenic
AACTTTGTGTTTGGACAAAA+TGG	0.233944	tig0016232:-5081	Msa1358350:CDS
ACACTTGATTTCACATTGTT+TGG	0.262813	tig0016232:+2718	Msa1358350:intergenic
ACAGAGAGAGTTGCATTGTA+GGG	0.519248	tig0016232:+3364	Msa1358350:intergenic
ACAGCCTCGGCAATGTTCCG+CGG	0.640517	tig0016232:-2820	Msa1358350:CDS
ACATGTTGCCTTCGATTTCC+TGG	0.324939	tig0016232:-3045	Msa1358350:CDS

Showing 1 to 10 of 118 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGGAAATGAAGGAATGAAT+AGG	+	tig0016232:2053-2072	Msa0316590:intergenic	30.0%
GAATTAGATCAAGTTCAAGT+TGG	+	tig0016232:2081-2100	Msa0316590:intergenic	30.0%
AACTTTGTGTTTGGACAAAA+TGG	-	tig0016232:2422-2441	Msa1358350:exon	30.0%
AAAATGGAGCTGGTAATAAT+TGG	-	tig0016232:2438-2457	Msa1358350:CDS	30.0%
AAATGGAGCTGGTAATAATT+GGG	-	tig0016232:2439-2458	Msa1358350:CDS	30.0%
AATACATCGTTCTCTACATT+TGG	-	tig0016232:2728-2747	Msa1358350:CDS	30.0%
CGTGACTATGATTTAATCTT+TGG	+	tig0016232:3199-3218	Msa1358350:intergenic	30.0%
AATCGAGGTTATATGTTTAG+TGG	-	tig0016232:3238-3257	Msa1358350:intron	30.0%
ACAAACGACAGGAAAAATTT+GGG	+	tig0016232:3336-3355	Msa1358350:intergenic	30.0%
TACAAACGACAGGAAAAATT+TGG	+	tig0016232:3337-3356	Msa1358350:intergenic	30.0%

Showing 1 to 10 of 243 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
tig0016232	gene	1943	5582	1943	ID=Msa1358350;Name=Msa1358350
tig0016232	mRNA	1943	5582	1943	ID=Msa1358350-mRNA-1;Parent=Msa1358350;Name=Msa1358350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=215\|1\|1\|1\|1\|1\|3\|495\|445
tig0016232	exon	1943	3111	1943	ID=Msa1358350-mRNA-1:exon:10848;Parent=Msa1358350-mRNA-1
tig0016232	exon	3266	3535	3266	ID=Msa1358350-mRNA-1:exon:10847;Parent=Msa1358350-mRNA-1
tig0016232	exon	4974	5582	4974	ID=Msa1358350-mRNA-1:exon:10846;Parent=Msa1358350-mRNA-1
tig0016232	five_prime_UTR	5368	5582	5368	ID=Msa1358350-mRNA-1:five_prime_utr;Parent=Msa1358350-mRNA-1
tig0016232	CDS	4974	5367	4974	ID=Msa1358350-mRNA-1:cds;Parent=Msa1358350-mRNA-1
tig0016232	CDS	3266	3535	3266	ID=Msa1358350-mRNA-1:cds;Parent=Msa1358350-mRNA-1
tig0016232	CDS	2438	3111	2438	ID=Msa1358350-mRNA-1:cds;Parent=Msa1358350-mRNA-1
tig0016232	three_prime_UTR	1943	2437	1943	ID=Msa1358350-mRNA-1:three_prime_utr;Parent=Msa1358350-mRNA-1

Gene Sequence

>Msa1358350

ATGAGAGAAATCCTTCATGTACAAGCAGGTCAATGTGGAAATCAAATTGGAGGAAAGTTTTGGGAGGTTATGTGTGATGAACATGGGATAGATCCTTCAGGAAGTTATGTAGGAAAGTCACACCTTCAACTTGAGAGAGTGAATGTGTACTACAATGAAGCAAGTGGTGGAAGATATGTTCCTAGAGCTGTTCTAATGGACCTTGAACCAGGTACCATGGACAGTTTGCGTTCTGGTCCATTTGGAAAAATATTTAGGCCTGATAACTTTGTGTTTGGACAAAATGGAGCTGGTAATAATTGGGCTAAAGGACATTACACTGAAGGAGCTGAACTTATTGATTCTGTTCTTGATGTTGTTCGTAAAGAAGCTGAGAATTGTGACTGCTTGCAAGGTTTTCAAATTTGTCATTCGCTTGGAGGTGGAACTGGATCAGGAATGGGTACCTTGCTCATTTCCAAGATCAGAGAAGAGTATCCAGATAGAATGATGTTGACTTTCTCAGTGTTCCCTTCACCAAAGGTTTCTGATACCGTGGTGGAACCCTACAATGCAACTCTCTCTGTTCATCAACTAGTTGAAAATGCAGACGAATGCATGGTTCTTGATAATGAGGCACTCTATGATATCTGTTTCAGAACACTCAAGCTCACTAATCCAAGTTTTGGTGATTTGAACCATTTGATATCAACAACAATGAGTGGAGTAACATGTTGCCTTCGATTTCCTGGCCAACTCAACTCTGATCTTAGGAAACTAGCAGTTAACCTCATCCCTTTCCCACGTCTACATTTTTTCATGGTTGGTTTTGCTCCCTTAACATCAAGAGGTTCTCAACAGTACAGTTCTCTCACAATTCCAGAACTCACACAGCAAATGTGGGATGCAAGAAACATGATGTGTGCTGCTGATCCAAGACATGGTAGGTATCTAACAGCCTCGGCAATGTTCCGCGGCAAAATGAGCACAAAAGAAGTTGATCAACAGATGATAAATGTTCAGAACAAGAACTCGTCTTACTTTGTGGAATGGATTCCAAACAATGTGAAATCAAGTGTTTGTGATATTCCGCCAACAGGGTTGTCGATGTCTTCAACATTTATGGGGAATTCGACATCTATTCAGGAAATGTTTAGGCGTGTTTCGGAGCAGTTTACTGTTATGTTTAAGAGAAAGGCATTTTTGCATTGGTATACTGCTGAAGGTATGGATGAGATGGAGTTTACTGAGGCTGAGAGTAATATGAATGATTTGGTTGCTGAATATCAACAATATCAAGATGCTGCTGGAGTGGAAGAAGGTGAGTTTGATGAAGAGGATGAAGAGGAAATTGCCTAG

Protein sequence

>Msa1358350

MREILHVQAGQCGNQIGGKFWEVMCDEHGIDPSGSYVGKSHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSSLTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTAEGMDEMEFTEAESNMNDLVAEYQQYQDAAGVEEGEFDEEDEEEIA*