Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340290 | XP_003597479.1 | 96.629 | 356 | 6 | 1 | 1 | 350 | 1 | 356 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340290 | sp|Q04869|YM94_YEAST | 27.138 | 269 | 182 | 7 | 1 | 263 | 1 | 261 | 4.71e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074320 | Msa0340290 | 0.803609 | 3.212285e-49 | -8.615850e-47 |
| Msa0075280 | Msa0340290 | 0.800882 | 1.169734e-48 | -8.615850e-47 |
| Msa0164610 | Msa0340290 | 0.808044 | 3.758315e-50 | -8.615850e-47 |
| Msa0187690 | Msa0340290 | 0.802134 | 6.480447e-49 | -8.615850e-47 |
| Msa0223570 | Msa0340290 | 0.909476 | 5.463749e-82 | -8.615850e-47 |
| Msa0264870 | Msa0340290 | 0.883795 | 3.314705e-71 | -8.615850e-47 |
| Msa0340290 | Msa0385810 | 0.813170 | 2.931621e-51 | -8.615850e-47 |
| Msa0340290 | Msa0404260 | 0.814234 | 1.709254e-51 | -8.615850e-47 |
| Msa0340290 | Msa0410500 | 0.809177 | 2.152280e-50 | -8.615850e-47 |
| Msa0340290 | Msa0422850 | 0.800578 | 1.349831e-48 | -8.615850e-47 |
| Msa0340290 | Msa0434920 | 0.814893 | 1.221892e-51 | -8.615850e-47 |
| Msa0340290 | Msa0574890 | 0.809898 | 1.507077e-50 | -8.615850e-47 |
| Msa0340290 | Msa0618240 | 0.812762 | 3.602045e-51 | -8.615850e-47 |
| Msa0340290 | Msa0620990 | 0.833369 | 5.548452e-56 | -8.615850e-47 |
| Msa0340290 | Msa0709780 | 0.802434 | 5.620677e-49 | -8.615850e-47 |
| Msa0340290 | Msa0828300 | 0.931810 | 2.177328e-94 | -8.615850e-47 |
| Msa0340290 | Msa0930780 | 0.831653 | 1.477265e-55 | -8.615850e-47 |
| Msa0340290 | Msa1113340 | 0.807973 | 3.890483e-50 | -8.615850e-47 |
| Msa0340290 | Msa1143650 | 0.818362 | 2.039007e-52 | -8.615850e-47 |
| Msa0340290 | Msa1168950 | 0.812684 | 3.745058e-51 | -8.615850e-47 |
| Msa0340290 | Msa1169040 | 0.815384 | 9.504168e-52 | -8.615850e-47 |
| Msa0340290 | Msa1200370 | 0.824742 | 6.843331e-54 | -8.615850e-47 |
| Msa0340290 | Msa1226620 | 0.820310 | 7.339619e-53 | -8.615850e-47 |
| Msa0340290 | Msa1252190 | 0.842558 | 2.403633e-58 | -8.615850e-47 |
| Msa0340290 | Msa1258710 | 0.804016 | 2.644915e-49 | -8.615850e-47 |
| Msa0340290 | Msa1274280 | 0.807454 | 5.014712e-50 | -8.615850e-47 |
| Msa0340290 | Msa1292830 | 0.820942 | 5.253840e-53 | -8.615850e-47 |
| Msa0340290 | Msa1313300 | 0.805058 | 1.603535e-49 | -8.615850e-47 |
| Msa0340290 | Msa1340510 | 0.824346 | 8.483614e-54 | -8.615850e-47 |
| Msa0340290 | Msa1358350 | 0.801401 | 9.163902e-49 | -8.615850e-47 |
| Msa0340290 | Msa1369150 | 0.806002 | 1.016226e-49 | -8.615850e-47 |
| Msa0340290 | Msa1459380 | 0.834151 | 3.538303e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340290 | MtrunA17_Chr2g0329171 | 96.629 | 356 | 6 | 1 | 1 | 350 | 1 | 356 | 0.0 | 699 |
| Msa0340290 | MtrunA17_Chr8g0342101 | 95.789 | 95 | 4 | 0 | 256 | 350 | 1 | 95 | 6.06e-60 | 188 |
| Msa0340290 | MtrunA17_Chr8g0342111 | 96.429 | 28 | 1 | 0 | 154 | 181 | 1 | 28 | 1.81e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340290 | AT3G20790.1 | 68.466 | 352 | 99 | 4 | 6 | 350 | 9 | 355 | 6.53e-171 | 479 |
Find 91 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTCACTCAAATTGTTAA+AGG | 0.165991 | 2_4:+61670875 | Msa0340290:CDS |
| GGGAGGTTTCATTCTTGATA+TGG | 0.259648 | 2_4:+61672926 | Msa0340290:intron |
| AACCGCTGTTCTTGTCGTTT+TGG | 0.265232 | 2_4:+61669545 | Msa0340290:CDS |
| TACTCCACTGAAAGGGAAAA+AGG | 0.284785 | 2_4:-61674140 | None:intergenic |
| CCAATACAGATCGCGATTCT+AGG | 0.299863 | 2_4:+61669324 | Msa0340290:CDS |
| GGAAATGTGGAATCTAAATT+TGG | 0.301322 | 2_4:+61669483 | Msa0340290:CDS |
| ATGCTCCTGGGCAAATAATT+TGG | 0.322118 | 2_4:+61672226 | Msa0340290:CDS |
| ATGTGATTGGATGAAGTTAT+AGG | 0.324732 | 2_4:+61674741 | Msa0340290:three_prime_UTR |
| TGCATTTCATTGCAGGGTTA+AGG | 0.331258 | 2_4:+61672952 | Msa0340290:CDS |
| AATGTTTATCCTCAGTCATT+TGG | 0.334582 | 2_4:+61673674 | Msa0340290:intron |
| CCAAAAGAAAATGCTAATCT+TGG | 0.359744 | 2_4:+61674964 | Msa0340290:three_prime_UTR |
| TCAGTAAGCTAGTACAGAAT+TGG | 0.359875 | 2_4:+61669264 | Msa0340290:five_prime_UTR |
| ACCACATGCCTTGGGTGATC+TGG | 0.360498 | 2_4:-61673736 | None:intergenic |
| ATGGGTGTGCATTTCATTGC+AGG | 0.364601 | 2_4:+61672945 | Msa0340290:CDS |
| AACGACAAGAACAGCGGTTA+TGG | 0.368079 | 2_4:-61669541 | None:intergenic |
| TGTTGATACAGGGACAAATT+AGG | 0.370200 | 2_4:+61674893 | Msa0340290:three_prime_UTR |
| TCGATTTCTGCTGATGCTCC+TGG | 0.371960 | 2_4:+61672213 | Msa0340290:CDS |
| CAAGAATCTAATTACCTTGA+GGG | 0.378715 | 2_4:-61674206 | None:intergenic |
| TTAGAGGCAATGCTTGAGTC+TGG | 0.383664 | 2_4:+61674540 | Msa0340290:CDS |
| AAGACAGATGATATATTATC+TGG | 0.394396 | 2_4:-61673586 | None:intergenic |
| CCTAGAATCGCGATCTGTAT+TGG | 0.394617 | 2_4:-61669324 | None:intergenic |
| TGAACTTTGTTTATTTCAAT+CGG | 0.400096 | 2_4:+61675015 | Msa0340290:three_prime_UTR |
| GGAGGTTTCATTCTTGATAT+GGG | 0.408876 | 2_4:+61672927 | Msa0340290:CDS |
| TGCAACAATCATTACCTTGA+AGG | 0.412787 | 2_4:-61670911 | None:intergenic |
| TCCCATGCATCTGTTGATAC+AGG | 0.428646 | 2_4:+61674882 | Msa0340290:three_prime_UTR |
| TGGCGAGTCGTTGGCATGAA+TGG | 0.428674 | 2_4:+61673883 | Msa0340290:CDS |
| ATCCTCAGTCATTTGGAGAA+TGG | 0.439451 | 2_4:+61673681 | Msa0340290:intron |
| GCTGGTAAACATGTCCTTCA+AGG | 0.444302 | 2_4:+61670897 | Msa0340290:CDS |
| CCAGGTAACCATGTTGTCCT+TGG | 0.464149 | 2_4:-61673930 | None:intergenic |
| GAATTGGATTGGATCGAAAT+CGG | 0.464538 | 2_4:+61669280 | Msa0340290:five_prime_UTR |
| AGCAGGGAGATCAATGTGAT+TGG | 0.472108 | 2_4:+61674728 | Msa0340290:three_prime_UTR |
| ACAAAAGAGAGGCGATGCTC+AGG | 0.477335 | 2_4:-61674492 | None:intergenic |
| ATCGTGAGTTCGACTCCAAA+TGG | 0.479571 | 2_4:-61669418 | None:intergenic |
| CGGACTTGTTCATCTTCACT+TGG | 0.487356 | 2_4:-61674698 | None:intergenic |
| AAGAAACTAATTGCTGACCT+TGG | 0.488102 | 2_4:+61672362 | Msa0340290:CDS |
| CAAAAGAAAATGCTAATCTT+GGG | 0.491327 | 2_4:+61674965 | Msa0340290:three_prime_UTR |
| TGTGAGATCTCCGAGAGTCT+TGG | 0.491599 | 2_4:-61669378 | None:intergenic |
| AGAAACTAATTGCTGACCTT+GGG | 0.508482 | 2_4:+61672363 | Msa0340290:CDS |
| AACAAGTCCGTGGATCAAGC+AGG | 0.508796 | 2_4:+61674711 | Msa0340290:three_prime_UTR |
| AGAAACAAATACCTCAACTA+AGG | 0.508827 | 2_4:-61672280 | None:intergenic |
| TCAAGTACTCAAAGCGTGTC+AGG | 0.509788 | 2_4:-61675045 | None:intergenic |
| TCACTCAAATTGTTAAAGGC+TGG | 0.510501 | 2_4:+61670879 | Msa0340290:CDS |
| CCAAGGACAACATGGTTACC+TGG | 0.511081 | 2_4:+61673930 | Msa0340290:CDS |
| GCTTGAGTCTGGATCAAAGC+AGG | 0.513242 | 2_4:+61674551 | Msa0340290:CDS |
| TATATTATCTGGCGGTGGTA+AGG | 0.516675 | 2_4:-61673575 | None:intergenic |
| TCCCTGTATCAACAGATGCA+TGG | 0.516967 | 2_4:-61674884 | None:intergenic |
| GGAATCCACGCTCAATCTGA+AGG | 0.518597 | 2_4:-61673909 | None:intergenic |
| AAGCTAGTACAGAATTGGAT+TGG | 0.520878 | 2_4:+61669269 | Msa0340290:five_prime_UTR |
| TACTGCAGGTATAACTGAGC+TGG | 0.521091 | 2_4:+61672167 | Msa0340290:intron |
| AGTGTGCAAGTTATTATAGA+AGG | 0.522861 | 2_4:+61672395 | Msa0340290:CDS |
| CATTTATTGAAATTTATGAC+TGG | 0.523498 | 2_4:+61674773 | Msa0340290:three_prime_UTR |
| CCCTGTATCAACAGATGCAT+GGG | 0.523743 | 2_4:-61674883 | None:intergenic |
| GAATCTAAATTTGGAGATAA+CGG | 0.525100 | 2_4:+61669492 | Msa0340290:CDS |
| ATTTCATTATATGATGCTCA+TGG | 0.528500 | 2_4:+61674103 | Msa0340290:CDS |
| CGATTTCTGCTGATGCTCCT+GGG | 0.530286 | 2_4:+61672214 | Msa0340290:CDS |
| CAGATTGAGCGTGGATTCCA+AGG | 0.533748 | 2_4:+61673913 | Msa0340290:CDS |
| CTTCAGTTACTCCACTGAAA+GGG | 0.534240 | 2_4:-61674147 | None:intergenic |
| TAGATCTTGTGGCGAGTCGT+TGG | 0.542383 | 2_4:+61673874 | Msa0340290:intron |
| TCATTTGGAGAATGGATGCT+CGG | 0.542787 | 2_4:+61673689 | Msa0340290:CDS |
| TCTTCAGTTACTCCACTGAA+AGG | 0.550039 | 2_4:-61674148 | None:intergenic |
| TGAACACATTATAGATCTTG+TGG | 0.550569 | 2_4:+61673863 | Msa0340290:intron |
| ACAAATACCTCAACTAAGGC+AGG | 0.553907 | 2_4:-61672276 | None:intergenic |
| CCCATGCATCTGTTGATACA+GGG | 0.555572 | 2_4:+61674883 | Msa0340290:three_prime_UTR |
| ACAGACCAAATTATTTGCCC+AGG | 0.558393 | 2_4:-61672231 | None:intergenic |
| CATTTGGAGAATGGATGCTC+GGG | 0.559246 | 2_4:+61673690 | Msa0340290:CDS |
| CGTGGATTCCAAGGACAACA+TGG | 0.570880 | 2_4:+61673922 | Msa0340290:CDS |
| TGGGTGTGCATTTCATTGCA+GGG | 0.573946 | 2_4:+61672946 | Msa0340290:CDS |
| TTTCATTGCAGGGTTAAGGA+TGG | 0.576994 | 2_4:+61672956 | Msa0340290:CDS |
| TCAATACCTTCCAAGACTCT+CGG | 0.581013 | 2_4:+61669368 | Msa0340290:CDS |
| CAGATCGCGATTCTAGGAGC+AGG | 0.582695 | 2_4:+61669330 | Msa0340290:CDS |
| TGATCTCCCTGCTTGATCCA+CGG | 0.585160 | 2_4:-61674718 | None:intergenic |
| TTCAGCTATGACATCTCATG+TGG | 0.585284 | 2_4:+61673546 | Msa0340290:CDS |
| GATGATATATTATCTGGCGG+TGG | 0.593534 | 2_4:-61673580 | None:intergenic |
| ACATGCCTTGGGTGATCTGG+AGG | 0.596307 | 2_4:-61673733 | None:intergenic |
| GGAACCCTTCAGATTGAGCG+TGG | 0.602295 | 2_4:+61673904 | Msa0340290:CDS |
| GAATCCACGCTCAATCTGAA+GGG | 0.610146 | 2_4:-61673908 | None:intergenic |
| TCGACAGCTTGTTGGATGTG+AGG | 0.615898 | 2_4:+61673513 | Msa0340290:intron |
| CTGAAACTTCTAATATCTCG+AGG | 0.616297 | 2_4:+61674815 | Msa0340290:three_prime_UTR |
| TCGGTTGATAACAATAACAA+TGG | 0.618788 | 2_4:+61669299 | Msa0340290:exon |
| TGGGCAAATAATTTGGTCTG+TGG | 0.621983 | 2_4:+61672233 | Msa0340290:CDS |
| TGTCTCCTCCAGATCACCCA+AGG | 0.629643 | 2_4:+61673728 | Msa0340290:CDS |
| CTTGAGTCTGGATCAAAGCA+GGG | 0.629895 | 2_4:+61674552 | Msa0340290:CDS |
| ACAGCTTGTTGGATGTGAGG+TGG | 0.631292 | 2_4:+61673516 | Msa0340290:intron |
| ATGCTCGGGAGTATTTGTAA+TGG | 0.634118 | 2_4:+61673704 | Msa0340290:CDS |
| TCGCACCCTCGACAAAAGAG+AGG | 0.637493 | 2_4:-61674503 | None:intergenic |
| ACAAGTCCGTGGATCAAGCA+GGG | 0.646178 | 2_4:+61674712 | Msa0340290:three_prime_UTR |
| TGTTTCTGAAAACACCCTCA+AGG | 0.651558 | 2_4:+61674192 | Msa0340290:CDS |
| AGATCTCCGAGAGTCTTGGA+AGG | 0.674115 | 2_4:-61669374 | None:intergenic |
| AGTGAAGATGAACAAGTCCG+TGG | 0.687379 | 2_4:+61674701 | Msa0340290:three_prime_UTR |
| ACAGATGATATATTATCTGG+CGG | 0.689783 | 2_4:-61673583 | None:intergenic |
| AGCCAAAACGACAAGAACAG+CGG | 0.710945 | 2_4:-61669547 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATAATGACATTAAAT+TGG | - | chr2_4:61670319-61670338 | None:intergenic | 10.0% |
| !!! | TTTGAATTTTCTTTAATTTT+AGG | + | chr2_4:61670481-61670500 | Msa0340290:intron | 10.0% |
| !!! | TTGAATTTTCTTTAATTTTA+GGG | + | chr2_4:61670482-61670501 | Msa0340290:intron | 10.0% |
| !!! | TATAAATCATTTTTCTTTTA+TGG | + | chr2_4:61671191-61671210 | Msa0340290:intron | 10.0% |
| !!! | TTTTTTTCAATTAAGATTAG+AGG | + | chr2_4:61670076-61670095 | Msa0340290:intron | 15.0% |
| !!! | TTTTTTCAATTAAGATTAGA+GGG | + | chr2_4:61670077-61670096 | Msa0340290:intron | 15.0% |
| !! | ATAAATTATAAGCTCAAAAA+TGG | + | chr2_4:61670248-61670267 | Msa0340290:intron | 15.0% |
| !! | TAAATTATAAGCTCAAAAAT+GGG | + | chr2_4:61670249-61670268 | Msa0340290:intron | 15.0% |
| !!! | TACAATTTTAAGGATTAAAT+TGG | + | chr2_4:61670440-61670459 | Msa0340290:intron | 15.0% |
| !! | TAATTAATCAAATATATAGC+TGG | + | chr2_4:61670555-61670574 | Msa0340290:intron | 15.0% |
| !!! | AAGAAAGAAATATTTGAAAT+AGG | + | chr2_4:61671634-61671653 | Msa0340290:intron | 15.0% |
| !!! | AGAAAGAAATATTTGAAATA+GGG | + | chr2_4:61671635-61671654 | Msa0340290:intron | 15.0% |
| !! | AAAAATAATACCTTAACATA+AGG | - | chr2_4:61672895-61672914 | None:intergenic | 15.0% |
| !! | ATATTAGAAACTTAGTAATT+AGG | + | chr2_4:61673447-61673466 | Msa0340290:intron | 15.0% |
| !!! | GTTTTCATAAATAATATCTT+AGG | + | chr2_4:61673977-61673996 | Msa0340290:intron | 15.0% |
| !! | TATATAATTGAGAATAAGAA+AGG | - | chr2_4:61674311-61674330 | None:intergenic | 15.0% |
| !!! | GTAGATTCTTTTTTTTTTTT+TGG | - | chr2_4:61674669-61674688 | None:intergenic | 15.0% |
| !!! | ATCTTTTATTTACGTCATTT+TGG | - | chr2_4:61669749-61669768 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTAAGATTAGAG+GGG | + | chr2_4:61670078-61670097 | Msa0340290:intron | 20.0% |
| !!! | TTACTTTTATTAGCTTATAG+TGG | - | chr2_4:61670160-61670179 | None:intergenic | 20.0% |
| !!! | TTGACTAATAAAGACATTTT+TGG | - | chr2_4:61670213-61670232 | None:intergenic | 20.0% |
| !! | TTAAATTGGTTATTTACTTG+CGG | + | chr2_4:61670454-61670473 | Msa0340290:intron | 20.0% |
| !!! | TTTTTTCCCAATAAAGTTTA+GGG | - | chr2_4:61670775-61670794 | None:intergenic | 20.0% |
| !! | TGACTAAATTTCTCTTTATT+TGG | + | chr2_4:61671053-61671072 | Msa0340290:intron | 20.0% |
| !! | CTATATTGCTAACTTAATTT+AGG | + | chr2_4:61671301-61671320 | Msa0340290:intron | 20.0% |
| !! | TAAGAAAAAGTTTCTACATT+TGG | + | chr2_4:61671776-61671795 | Msa0340290:intron | 20.0% |
| !! | GACAAAATAAATTATGTGAA+TGG | - | chr2_4:61672337-61672356 | None:intergenic | 20.0% |
| !!! | TTCACATAATTTATTTTGTC+AGG | + | chr2_4:61672337-61672356 | Msa0340290:intron | 20.0% |
| !!! | TCACATAATTTATTTTGTCA+GGG | + | chr2_4:61672338-61672357 | Msa0340290:intron | 20.0% |
| !! | TTTATGTATTTCCTTATATC+TGG | + | chr2_4:61672770-61672789 | Msa0340290:intron | 20.0% |
| !! | CAAAAGATGAAAAGAATTAA+TGG | + | chr2_4:61673391-61673410 | Msa0340290:intron | 20.0% |
| !! | TTACTAAGTTTCTAATATAG+AGG | - | chr2_4:61673445-61673464 | None:intergenic | 20.0% |
| !! | TCATAAATAATATCTTAGGT+AGG | + | chr2_4:61673981-61674000 | Msa0340290:intron | 20.0% |
| !! | TCATATCACATAATAGTTAA+TGG | + | chr2_4:61674366-61674385 | Msa0340290:intron | 20.0% |
| !!! | CTTTTTTTTTTTTTGGAACT+CGG | - | chr2_4:61674662-61674681 | None:intergenic | 20.0% |
| !! | CATTTATTGAAATTTATGAC+TGG | + | chr2_4:61674773-61674792 | Msa0340290:three_prime_UTR | 20.0% |
| !!! | TGAACTTTGTTTATTTCAAT+CGG | + | chr2_4:61675015-61675034 | Msa0340290:three_prime_UTR | 20.0% |
| !! | TTTTCAATCTCAAATCCATT+TGG | + | chr2_4:61669403-61669422 | Msa0340290:CDS | 25.0% |
| !! | CAAATTGCTAACAAACTTTT+TGG | + | chr2_4:61669459-61669478 | Msa0340290:CDS | 25.0% |
| ! | GAATCTAAATTTGGAGATAA+CGG | + | chr2_4:61669492-61669511 | Msa0340290:CDS | 25.0% |
| ! | AAAAAGTAGTTATGGAAGAA+TGG | - | chr2_4:61669600-61669619 | None:intergenic | 25.0% |
| !!! | GAGTTTTGAAAAAGTAGTTA+TGG | - | chr2_4:61669608-61669627 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAAACTCAATCAT+TGG | + | chr2_4:61669614-61669633 | Msa0340290:intron | 25.0% |
| !! | AAATCGTTATCTGAAATTGT+AGG | + | chr2_4:61669777-61669796 | Msa0340290:intron | 25.0% |
| !!! | TTTGAGTAAATAACTTGTTC+TGG | + | chr2_4:61669827-61669846 | Msa0340290:intron | 25.0% |
| ! | GGTAAAAAAATAGTGAATAG+CGG | + | chr2_4:61669911-61669930 | Msa0340290:intron | 25.0% |
| ! | GTAAAAAAATAGTGAATAGC+GGG | + | chr2_4:61669912-61669931 | Msa0340290:intron | 25.0% |
| !! | GAGGATAAATTTGAAACTAA+GGG | - | chr2_4:61670289-61670308 | None:intergenic | 25.0% |
| ! | GTCATTCCAAATACTAATAA+AGG | + | chr2_4:61670339-61670358 | Msa0340290:intron | 25.0% |
| ! | TTCGTACCTTTATTAGTATT+TGG | - | chr2_4:61670348-61670367 | None:intergenic | 25.0% |
| !! | ATTAACATTTTGCAATTCCA+GGG | + | chr2_4:61670372-61670391 | Msa0340290:intron | 25.0% |
| !!! | ACTAGGTTGATACAATTTTA+AGG | + | chr2_4:61670430-61670449 | Msa0340290:intron | 25.0% |
| ! | ATTGTAAAATAGTGTCAACT+TGG | - | chr2_4:61670509-61670528 | None:intergenic | 25.0% |
| !! | GACACTATTTTACAATTTGA+AGG | + | chr2_4:61670513-61670532 | Msa0340290:intron | 25.0% |
| !!! | CTTTTTTCCCAATAAAGTTT+AGG | - | chr2_4:61670776-61670795 | None:intergenic | 25.0% |
| ! | AACAAATTATCAATTCTTGC+AGG | + | chr2_4:61670848-61670867 | Msa0340290:intron | 25.0% |
| ! | ATAAAGAGAAATTTAGTCAG+TGG | - | chr2_4:61671052-61671071 | None:intergenic | 25.0% |
| ! | TAATAGAATCTTAGAAGCTA+GGG | - | chr2_4:61671338-61671357 | None:intergenic | 25.0% |
| ! | TTAATAGAATCTTAGAAGCT+AGG | - | chr2_4:61671339-61671358 | None:intergenic | 25.0% |
| ! | CCTCAAATATCTTCTTAATT+AGG | - | chr2_4:61671362-61671381 | None:intergenic | 25.0% |
| ! | CCTAATTAAGAAGATATTTG+AGG | + | chr2_4:61671359-61671378 | Msa0340290:intron | 25.0% |
| ! | AACGCTAAATACTTATCTAT+TGG | + | chr2_4:61671475-61671494 | Msa0340290:intron | 25.0% |
| ! | TCATTACATATAAGTGAGAT+GGG | - | chr2_4:61671986-61672005 | None:intergenic | 25.0% |
| ! | TTCATTACATATAAGTGAGA+TGG | - | chr2_4:61671987-61672006 | None:intergenic | 25.0% |
| ! | TCTCACTTATATGTAATGAA+AGG | + | chr2_4:61671987-61672006 | Msa0340290:intron | 25.0% |
| ! | AAAGTTATCAATGTGATAGA+GGG | - | chr2_4:61672050-61672069 | None:intergenic | 25.0% |
| ! | ATATATTAATCTGATACTGC+AGG | + | chr2_4:61672153-61672172 | Msa0340290:intron | 25.0% |
| !! | ATCTGTATTTGTTTAAGTTC+AGG | + | chr2_4:61672500-61672519 | Msa0340290:intron | 25.0% |
| !! | TCTGTATTTGTTTAAGTTCA+GGG | + | chr2_4:61672501-61672520 | Msa0340290:intron | 25.0% |
| ! | TATTCTGGCATAAAAATGAA+GGG | + | chr2_4:61672564-61672583 | Msa0340290:intron | 25.0% |
| !! | TTCATAATGTTTGTGGTTTT+AGG | - | chr2_4:61672631-61672650 | None:intergenic | 25.0% |
| ! | CTTTACTTTCATAATGTTTG+TGG | - | chr2_4:61672638-61672657 | None:intergenic | 25.0% |
| !! | TGTTTTCTCTTAACAGTATT+TGG | + | chr2_4:61672867-61672886 | Msa0340290:intron | 25.0% |
| !!! | AAGGTATTATTTTTCCTTTC+TGG | + | chr2_4:61672901-61672920 | Msa0340290:intron | 25.0% |
| !! | TGATAAATGCTGATTATCTT+TGG | + | chr2_4:61673069-61673088 | Msa0340290:intron | 25.0% |
| ! | TTCCATACTCAAGTTTATTT+CGG | - | chr2_4:61673189-61673208 | None:intergenic | 25.0% |
| ! | ACTTCTATACAATGATTTGA+TGG | + | chr2_4:61673474-61673493 | Msa0340290:intron | 25.0% |
| ! | AAGACAGATGATATATTATC+TGG | - | chr2_4:61673589-61673608 | None:intergenic | 25.0% |
| !!! | AAGTTATTTCTGGAAAATAG+AGG | - | chr2_4:61673617-61673636 | None:intergenic | 25.0% |
| !! | AGTGTTTGTAAAGTTATTTC+TGG | - | chr2_4:61673627-61673646 | None:intergenic | 25.0% |
| ! | TGAAGTAATTGCAAATTAAG+TGG | - | chr2_4:61674029-61674048 | None:intergenic | 25.0% |
| ! | TCAGATAGTAATGAAGATAA+CGG | - | chr2_4:61674065-61674084 | None:intergenic | 25.0% |
| ! | ATTTCATTATATGATGCTCA+TGG | + | chr2_4:61674103-61674122 | Msa0340290:CDS | 25.0% |
| ! | AAAAAAAAAACAGTTCATGC+TGG | + | chr2_4:61674420-61674439 | Msa0340290:intron | 25.0% |
| ! | AAAAAAAAACAGTTCATGCT+GGG | + | chr2_4:61674421-61674440 | Msa0340290:intron | 25.0% |
| ! | TATGTAGATATTGAATGAAG+AGG | - | chr2_4:61674631-61674650 | None:intergenic | 25.0% |
| !! | TCATATTTTCTTTTACTGCA+CGG | + | chr2_4:61674921-61674940 | Msa0340290:three_prime_UTR | 25.0% |
| !! | CAAGATTAGCATTTTCTTTT+GGG | - | chr2_4:61674966-61674985 | None:intergenic | 25.0% |
| ! | CAAAAGAAAATGCTAATCTT+GGG | + | chr2_4:61674965-61674984 | Msa0340290:three_prime_UTR | 25.0% |
| !! | TCGGTTGATAACAATAACAA+TGG | + | chr2_4:61669299-61669318 | Msa0340290:exon | 30.0% |
| ! | ATTGCTAACAAACTTTTTGG+TGG | + | chr2_4:61669462-61669481 | Msa0340290:CDS | 30.0% |
| GGAAATGTGGAATCTAAATT+TGG | + | chr2_4:61669483-61669502 | Msa0340290:CDS | 30.0% | |
| TGAAGATACATCTAGATAGA+GGG | - | chr2_4:61669877-61669896 | None:intergenic | 30.0% | |
| ATCTAGATGTATCTTCACTA+AGG | + | chr2_4:61669880-61669899 | Msa0340290:intron | 30.0% | |
| TGATAAGCTTAGCTTATATC+AGG | + | chr2_4:61669954-61669973 | Msa0340290:intron | 30.0% | |
| TATATCAGGTGAGCTTATAA+TGG | + | chr2_4:61669968-61669987 | Msa0340290:intron | 30.0% | |
| !! | CTTATAATGGATAGGTGATA+GGG | + | chr2_4:61669981-61670000 | Msa0340290:intron | 30.0% |
| ! | CGAGGATAAATTTGAAACTA+AGG | - | chr2_4:61670290-61670309 | None:intergenic | 30.0% |
| !! | ACATTAAATTGGTAATGTCG+AGG | - | chr2_4:61670308-61670327 | None:intergenic | 30.0% |
| ! | GATTAACATTTTGCAATTCC+AGG | + | chr2_4:61670371-61670390 | Msa0340290:intron | 30.0% |
| CATGATTTAAAAATGATCCC+TGG | - | chr2_4:61670392-61670411 | None:intergenic | 30.0% | |
| !! | CAGGGATCATTTTTAAATCA+TGG | + | chr2_4:61670390-61670409 | Msa0340290:intron | 30.0% |
| TATTGGGAAAAAAGAGTCAT+TGG | + | chr2_4:61670782-61670801 | Msa0340290:intron | 30.0% | |
| !!! | ATTGGAATCATGTTTTTTGC+TGG | + | chr2_4:61670800-61670819 | Msa0340290:intron | 30.0% |
| !! | TTTGCTGGAGTTTATTTTTC+AGG | + | chr2_4:61670815-61670834 | Msa0340290:intron | 30.0% |
| CATCTCACTCAAATTGTTAA+AGG | + | chr2_4:61670875-61670894 | Msa0340290:CDS | 30.0% | |
| GTAACAAATGTCAATACAGT+AGG | - | chr2_4:61671000-61671019 | None:intergenic | 30.0% | |
| TTTGGATGTATTGTATGCAT+TGG | + | chr2_4:61671071-61671090 | Msa0340290:intron | 30.0% | |
| TTGGATGTATTGTATGCATT+GGG | + | chr2_4:61671072-61671091 | Msa0340290:intron | 30.0% | |
| !!! | TCTTGTTTTTGCATGATTCT+AGG | + | chr2_4:61671234-61671253 | Msa0340290:intron | 30.0% |
| ACCTTGTCAGTAAAAAAAAG+TGG | - | chr2_4:61671542-61671561 | None:intergenic | 30.0% | |
| !! | CTCTTTCGTGTTATTTCAAA+GGG | - | chr2_4:61671840-61671859 | None:intergenic | 30.0% |
| !! | CTTTGAAATAACACGAAAGA+GGG | + | chr2_4:61671839-61671858 | Msa0340290:intron | 30.0% |
| AAGTCACTACTAAGTATCAT+CGG | - | chr2_4:61672013-61672032 | None:intergenic | 30.0% | |
| GAAAGTTATCAATGTGATAG+AGG | - | chr2_4:61672051-61672070 | None:intergenic | 30.0% | |
| TTATTTGCCTCTCTATTAGA+TGG | + | chr2_4:61672091-61672110 | Msa0340290:intron | 30.0% | |
| ! | TACGCTAAGAGTTTAGAATA+GGG | - | chr2_4:61672130-61672149 | None:intergenic | 30.0% |
| ! | TTACGCTAAGAGTTTAGAAT+AGG | - | chr2_4:61672131-61672150 | None:intergenic | 30.0% |
| AGAAACAAATACCTCAACTA+AGG | - | chr2_4:61672283-61672302 | None:intergenic | 30.0% | |
| !! | GACATTTTAACCTATGAATC+TGG | + | chr2_4:61672307-61672326 | Msa0340290:intron | 30.0% |
| AGTGTGCAAGTTATTATAGA+AGG | + | chr2_4:61672395-61672414 | Msa0340290:CDS | 30.0% | |
| TCCAAGAGCTTGAAAAATAA+GGG | - | chr2_4:61672439-61672458 | None:intergenic | 30.0% | |
| ! | CTGTATTTGTTTAAGTTCAG+GGG | + | chr2_4:61672502-61672521 | Msa0340290:intron | 30.0% |
| CTTAATCAACTCTACTATTC+TGG | + | chr2_4:61672549-61672568 | Msa0340290:intron | 30.0% | |
| CTATTCTGGCATAAAAATGA+AGG | + | chr2_4:61672563-61672582 | Msa0340290:intron | 30.0% | |
| ATTCTGGCATAAAAATGAAG+GGG | + | chr2_4:61672565-61672584 | Msa0340290:intron | 30.0% | |
| !!! | TCCTTTTAGTTTAGATGACA+TGG | + | chr2_4:61672691-61672710 | Msa0340290:intron | 30.0% |
| TGCTAGTATAACCAGATATA+AGG | - | chr2_4:61672784-61672803 | None:intergenic | 30.0% | |
| ! | AACTTTTGTGCTACATGTAA+GGG | - | chr2_4:61672841-61672860 | None:intergenic | 30.0% |
| ! | AAACTTTTGTGCTACATGTA+AGG | - | chr2_4:61672842-61672861 | None:intergenic | 30.0% |
| ! | GTATTTGGTTCCTTATGTTA+AGG | + | chr2_4:61672882-61672901 | Msa0340290:intron | 30.0% |
| !! | TATTATTTTTCCTTTCTGGC+AGG | + | chr2_4:61672905-61672924 | Msa0340290:intron | 30.0% |
| !! | ATTATTTTTCCTTTCTGGCA+GGG | + | chr2_4:61672906-61672925 | Msa0340290:intron | 30.0% |
| ! | GTATTTTGTTGCGCAATTTA+TGG | + | chr2_4:61673043-61673062 | Msa0340290:intron | 30.0% |
| TTATCTTTGGTCTAATCAAC+TGG | + | chr2_4:61673082-61673101 | Msa0340290:intron | 30.0% | |
| TATCTTTGGTCTAATCAACT+GGG | + | chr2_4:61673083-61673102 | Msa0340290:intron | 30.0% | |
| ! | ATAGAGAACTGCTTTCATTT+TGG | + | chr2_4:61673292-61673311 | Msa0340290:intron | 30.0% |
| !!! | TTTCATCTTTTGACTTCCTA+AGG | - | chr2_4:61673383-61673402 | None:intergenic | 30.0% |
| TCTATACAATGATTTGATGG+TGG | + | chr2_4:61673477-61673496 | Msa0340290:intron | 30.0% | |
| ACAGATGATATATTATCTGG+CGG | - | chr2_4:61673586-61673605 | None:intergenic | 30.0% | |
| ! | CAACAATATTTTCAGACTTC+CGG | - | chr2_4:61673653-61673672 | None:intergenic | 30.0% |
| AATGTTTATCCTCAGTCATT+TGG | + | chr2_4:61673674-61673693 | Msa0340290:intron | 30.0% | |
| TATGAGCATATCTACTGTTT+GGG | - | chr2_4:61673804-61673823 | None:intergenic | 30.0% | |
| TTATGAGCATATCTACTGTT+TGG | - | chr2_4:61673805-61673824 | None:intergenic | 30.0% | |
| ! | TTCTTGCAAGTTTTTACTCA+TGG | + | chr2_4:61673837-61673856 | Msa0340290:intron | 30.0% |
| TGAACACATTATAGATCTTG+TGG | + | chr2_4:61673863-61673882 | Msa0340290:intron | 30.0% | |
| TGTACTATAGTTACAGTTAC+AGG | + | chr2_4:61673955-61673974 | Msa0340290:intron | 30.0% | |
| GCAAATTAAGTGGATATTGA+AGG | - | chr2_4:61674019-61674038 | None:intergenic | 30.0% | |
| CAAGAATCTAATTACCTTGA+GGG | - | chr2_4:61674209-61674228 | None:intergenic | 30.0% | |
| !!! | AGTTCTACCTTCTCATTTTT+TGG | + | chr2_4:61674243-61674262 | Msa0340290:intron | 30.0% |
| AATGGAACCAAAAAATGAGA+AGG | - | chr2_4:61674253-61674272 | None:intergenic | 30.0% | |
| TATAGACGAGGAATTTGTAA+TGG | - | chr2_4:61674271-61674290 | None:intergenic | 30.0% | |
| ! | TTTTCTGAATCAACTGTTTG+TGG | - | chr2_4:61674344-61674363 | None:intergenic | 30.0% |
| ! | GTTCATGTGAAAAAGTTTTG+AGG | + | chr2_4:61674582-61674601 | Msa0340290:CDS | 30.0% |
| TAATCATAGAACTCTTTGCA+TGG | + | chr2_4:61674605-61674624 | Msa0340290:intron | 30.0% | |
| ATGTGATTGGATGAAGTTAT+AGG | + | chr2_4:61674741-61674760 | Msa0340290:three_prime_UTR | 30.0% | |
| ! | CCAAGATTAGCATTTTCTTT+TGG | - | chr2_4:61674967-61674986 | None:intergenic | 30.0% |
| CCAAAAGAAAATGCTAATCT+TGG | + | chr2_4:61674964-61674983 | Msa0340290:three_prime_UTR | 30.0% | |
| TCAGTAAGCTAGTACAGAAT+TGG | + | chr2_4:61669264-61669283 | Msa0340290:five_prime_UTR | 35.0% | |
| AAGCTAGTACAGAATTGGAT+TGG | + | chr2_4:61669269-61669288 | Msa0340290:five_prime_UTR | 35.0% | |
| ! | GAATTGGATTGGATCGAAAT+CGG | + | chr2_4:61669280-61669299 | Msa0340290:five_prime_UTR | 35.0% |
| !! | CAAACTTTTTGGTGGAAATG+TGG | + | chr2_4:61669470-61669489 | Msa0340290:CDS | 35.0% |
| GTGAAGATACATCTAGATAG+AGG | - | chr2_4:61669878-61669897 | None:intergenic | 35.0% | |
| ATCTTCACTAAGGTTCTGTT+TGG | + | chr2_4:61669890-61669909 | Msa0340290:intron | 35.0% | |
| !! | GCTTATAATGGATAGGTGAT+AGG | + | chr2_4:61669980-61669999 | Msa0340290:intron | 35.0% |
| ! | TTTGAAACTAAGGGTCTGTT+TGG | - | chr2_4:61670280-61670299 | None:intergenic | 35.0% |
| TAGAGTCATTGAAACTCCAA+GGG | + | chr2_4:61670595-61670614 | Msa0340290:intron | 35.0% | |
| AATACCTATCTAAGTGCTCT+TGG | + | chr2_4:61670704-61670723 | Msa0340290:intron | 35.0% | |
| TCACTCAAATTGTTAAAGGC+TGG | + | chr2_4:61670879-61670898 | Msa0340290:CDS | 35.0% | |
| TGCAACAATCATTACCTTGA+AGG | - | chr2_4:61670914-61670933 | None:intergenic | 35.0% | |
| TACAGTAGGATAATGAGTAG+TGG | - | chr2_4:61670986-61671005 | None:intergenic | 35.0% | |
| TGGATGTATTGTATGCATTG+GGG | + | chr2_4:61671073-61671092 | Msa0340290:intron | 35.0% | |
| !!! | GCCACTTTTTTTTACTGACA+AGG | + | chr2_4:61671538-61671557 | Msa0340290:intron | 35.0% |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr2_4:61671817-61671836 | None:intergenic | 35.0% |
| !! | CCTCTTTCGTGTTATTTCAA+AGG | - | chr2_4:61671841-61671860 | None:intergenic | 35.0% |
| !! | CCTTTGAAATAACACGAAAG+AGG | + | chr2_4:61671838-61671857 | Msa0340290:intron | 35.0% |
| ATGATTGCTACAAATAGGCT+TGG | - | chr2_4:61671898-61671917 | None:intergenic | 35.0% | |
| GACTCATGATTGCTACAAAT+AGG | - | chr2_4:61671903-61671922 | None:intergenic | 35.0% | |
| TGGATTATGGAATTTCAGCA+GGG | + | chr2_4:61671945-61671964 | Msa0340290:intron | 35.0% | |
| TACATATAAGTGAGATGGGA+TGG | - | chr2_4:61671982-61672001 | None:intergenic | 35.0% | |
| GATGATACTTAGTAGTGACT+TGG | + | chr2_4:61672012-61672031 | Msa0340290:intron | 35.0% | |
| CAACTTTCCATCTAATAGAG+AGG | - | chr2_4:61672101-61672120 | None:intergenic | 35.0% | |
| AAGAAACTAATTGCTGACCT+TGG | + | chr2_4:61672362-61672381 | Msa0340290:CDS | 35.0% | |
| AGAAACTAATTGCTGACCTT+GGG | + | chr2_4:61672363-61672382 | Msa0340290:CDS | 35.0% | |
| !!! | ACCCTTATTTTTCAAGCTCT+TGG | + | chr2_4:61672435-61672454 | Msa0340290:CDS | 35.0% |
| CTCCAAGAGCTTGAAAAATA+AGG | - | chr2_4:61672440-61672459 | None:intergenic | 35.0% | |
| !!! | CTTATTTTTCAAGCTCTTGG+AGG | + | chr2_4:61672438-61672457 | Msa0340290:CDS | 35.0% |
| GCCATGTCATCTAAACTAAA+AGG | - | chr2_4:61672695-61672714 | None:intergenic | 35.0% | |
| CATTCACTTTCAGTTCATCA+CGG | + | chr2_4:61672746-61672765 | Msa0340290:intron | 35.0% | |
| GGAGGTTTCATTCTTGATAT+GGG | + | chr2_4:61672927-61672946 | Msa0340290:CDS | 35.0% | |
| TGCCGAAATAAACTTGAGTA+TGG | + | chr2_4:61673184-61673203 | Msa0340290:intron | 35.0% | |
| CGTTTAAATCAGACAAGCAA+TGG | - | chr2_4:61673215-61673234 | None:intergenic | 35.0% | |
| TTGAAATGTTTCTCACCTCA+TGG | + | chr2_4:61673254-61673273 | Msa0340290:intron | 35.0% | |
| CACAATTTATGCATTCCATG+AGG | - | chr2_4:61673272-61673291 | None:intergenic | 35.0% | |
| !! | TTCATTTTGGCACCAATTTG+AGG | + | chr2_4:61673305-61673324 | Msa0340290:intron | 35.0% |
| ATGAAATTTCCTGTCTCCTT+AGG | + | chr2_4:61673364-61673383 | Msa0340290:intron | 35.0% | |
| TAACTTTACAAACACTCGAC+CGG | + | chr2_4:61673631-61673650 | Msa0340290:intron | 35.0% | |
| CGGAAGTCTGAAAATATTGT+TGG | + | chr2_4:61673651-61673670 | Msa0340290:intron | 35.0% | |
| CTGTAACTATAGTACATACC+AGG | - | chr2_4:61673951-61673970 | None:intergenic | 35.0% | |
| TGGATATTGAAGGAAAAGCT+CGG | - | chr2_4:61674009-61674028 | None:intergenic | 35.0% | |
| GCAAGAATCTAATTACCTTG+AGG | - | chr2_4:61674210-61674229 | None:intergenic | 35.0% | |
| AAAATGAGAAGGTAGAACTG+AGG | - | chr2_4:61674242-61674261 | None:intergenic | 35.0% | |
| GATGAACAAAGATATAGACG+AGG | - | chr2_4:61674283-61674302 | None:intergenic | 35.0% | |
| TCAACTGTTTGTGGTAAGTT+TGG | - | chr2_4:61674335-61674354 | None:intergenic | 35.0% | |
| ! | ATTCACTTCCATTTTGCAGA+AGG | + | chr2_4:61674461-61674480 | Msa0340290:intron | 35.0% |
| ! | TTCACTTCCATTTTGCAGAA+GGG | + | chr2_4:61674462-61674481 | Msa0340290:intron | 35.0% |
| CTGAAACTTCTAATATCTCG+AGG | + | chr2_4:61674815-61674834 | Msa0340290:three_prime_UTR | 35.0% | |
| TGTTGATACAGGGACAAATT+AGG | + | chr2_4:61674893-61674912 | Msa0340290:three_prime_UTR | 35.0% | |
| TCAATACCTTCCAAGACTCT+CGG | + | chr2_4:61669368-61669387 | Msa0340290:CDS | 40.0% | |
| !! | CAGGTGAGCTTATAATGGAT+AGG | + | chr2_4:61669973-61669992 | Msa0340290:intron | 40.0% |
| ! | TCATGGTAATGTGCTCATGA+AGG | + | chr2_4:61670407-61670426 | Msa0340290:intron | 40.0% |
| TAATGTGCTCATGAAGGACT+AGG | + | chr2_4:61670413-61670432 | Msa0340290:intron | 40.0% | |
| GTAGAGTCATTGAAACTCCA+AGG | + | chr2_4:61670594-61670613 | Msa0340290:intron | 40.0% | |
| TCATTGAAACTCCAAGGGAT+TGG | + | chr2_4:61670600-61670619 | Msa0340290:intron | 40.0% | |
| TGGTCTAGTGGTAAAAACAC+AGG | + | chr2_4:61670620-61670639 | Msa0340290:intron | 40.0% | |
| AGTGGTAAAAACACAGGTGT+TGG | + | chr2_4:61670626-61670645 | Msa0340290:intron | 40.0% | |
| !! | AAAAACACAGGTGTTGGATC+TGG | + | chr2_4:61670632-61670651 | Msa0340290:intron | 40.0% |
| TTTATATTGACCTCCCTCCA+GGG | - | chr2_4:61670686-61670705 | None:intergenic | 40.0% | |
| ATTTATATTGACCTCCCTCC+AGG | - | chr2_4:61670687-61670706 | None:intergenic | 40.0% | |
| ! | CCAATAAAGTTTAGGGTGAG+GGG | - | chr2_4:61670768-61670787 | None:intergenic | 40.0% |
| ! | CCCAATAAAGTTTAGGGTGA+GGG | - | chr2_4:61670769-61670788 | None:intergenic | 40.0% |
| CCCTCACCCTAAACTTTATT+GGG | + | chr2_4:61670766-61670785 | Msa0340290:intron | 40.0% | |
| ! | TCCCAATAAAGTTTAGGGTG+AGG | - | chr2_4:61670770-61670789 | None:intergenic | 40.0% |
| GGATGTATTGTATGCATTGG+GGG | + | chr2_4:61671074-61671093 | Msa0340290:intron | 40.0% | |
| ! | TGGTGGATATGAAGAGAAAC+CGG | + | chr2_4:61671104-61671123 | Msa0340290:intron | 40.0% |
| GCATGCAGACTAAGAAAGTA+TGG | - | chr2_4:61671271-61671290 | None:intergenic | 40.0% | |
| TAGAATCTTAGAAGCTAGGG+AGG | - | chr2_4:61671335-61671354 | None:intergenic | 40.0% | |
| GTTGCATTTAAGCACACTTG+AGG | + | chr2_4:61671437-61671456 | Msa0340290:intron | 40.0% | |
| ! | TTTAGCGTTAGAAAGTGTGC+AGG | - | chr2_4:61671464-61671483 | None:intergenic | 40.0% |
| ! | TAGTCTTGCAGCAGTTATAG+TGG | + | chr2_4:61671581-61671600 | Msa0340290:intron | 40.0% |
| AGTCTTGCAGCAGTTATAGT+GGG | + | chr2_4:61671582-61671601 | Msa0340290:intron | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr2_4:61671658-61671677 | Msa0340290:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr2_4:61671659-61671678 | Msa0340290:intron | 40.0% |
| TTCCTTAACTTATGCCCCAA+GGG | + | chr2_4:61671799-61671818 | Msa0340290:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr2_4:61671816-61671835 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr2_4:61671818-61671837 | None:intergenic | 40.0% |
| CTGGATTATGGAATTTCAGC+AGG | + | chr2_4:61671944-61671963 | Msa0340290:intron | 40.0% | |
| GGATTATGGAATTTCAGCAG+GGG | + | chr2_4:61671946-61671965 | Msa0340290:intron | 40.0% | |
| ATGCTCCTGGGCAAATAATT+TGG | + | chr2_4:61672226-61672245 | Msa0340290:CDS | 40.0% | |
| ACAGACCAAATTATTTGCCC+AGG | - | chr2_4:61672234-61672253 | None:intergenic | 40.0% | |
| TGGGCAAATAATTTGGTCTG+TGG | + | chr2_4:61672233-61672252 | Msa0340290:CDS | 40.0% | |
| ACAAATACCTCAACTAAGGC+AGG | - | chr2_4:61672279-61672298 | None:intergenic | 40.0% | |
| GGGAGGTTTCATTCTTGATA+TGG | + | chr2_4:61672926-61672945 | Msa0340290:intron | 40.0% | |
| TGCATTTCATTGCAGGGTTA+AGG | + | chr2_4:61672952-61672971 | Msa0340290:CDS | 40.0% | |
| TTTCATTGCAGGGTTAAGGA+TGG | + | chr2_4:61672956-61672975 | Msa0340290:CDS | 40.0% | |
| TCTAATCAACTGGGACTCTT+TGG | + | chr2_4:61673092-61673111 | Msa0340290:intron | 40.0% | |
| TTACAGATCGAGCCTCAAAT+TGG | - | chr2_4:61673320-61673339 | None:intergenic | 40.0% | |
| !!! | TTTTGACTTCCTAAGGAGAC+AGG | - | chr2_4:61673376-61673395 | None:intergenic | 40.0% |
| AACAAGCTGTCGAGAGTAAA+AGG | - | chr2_4:61673506-61673525 | None:intergenic | 40.0% | |
| ! | TTTTACTCTCGACAGCTTGT+TGG | + | chr2_4:61673505-61673524 | Msa0340290:intron | 40.0% |
| TTCAGCTATGACATCTCATG+TGG | + | chr2_4:61673546-61673565 | Msa0340290:CDS | 40.0% | |
| TATATTATCTGGCGGTGGTA+AGG | - | chr2_4:61673578-61673597 | None:intergenic | 40.0% | |
| GATGATATATTATCTGGCGG+TGG | - | chr2_4:61673583-61673602 | None:intergenic | 40.0% | |
| ATCCTCAGTCATTTGGAGAA+TGG | + | chr2_4:61673681-61673700 | Msa0340290:intron | 40.0% | |
| ATCCATTCTCCAAATGACTG+AGG | - | chr2_4:61673686-61673705 | None:intergenic | 40.0% | |
| TCATTTGGAGAATGGATGCT+CGG | + | chr2_4:61673689-61673708 | Msa0340290:CDS | 40.0% | |
| !! | ATGCTCGGGAGTATTTGTAA+TGG | + | chr2_4:61673704-61673723 | Msa0340290:CDS | 40.0% |
| GATCATTTACCACATGCCTT+GGG | - | chr2_4:61673747-61673766 | None:intergenic | 40.0% | |
| TGATCATTTACCACATGCCT+TGG | - | chr2_4:61673748-61673767 | None:intergenic | 40.0% | |
| ! | AGTTCCTTTTTCCCTTTCAG+TGG | + | chr2_4:61674136-61674155 | Msa0340290:CDS | 40.0% |
| TACTCCACTGAAAGGGAAAA+AGG | - | chr2_4:61674143-61674162 | None:intergenic | 40.0% | |
| CTTCAGTTACTCCACTGAAA+GGG | - | chr2_4:61674150-61674169 | None:intergenic | 40.0% | |
| TCTTCAGTTACTCCACTGAA+AGG | - | chr2_4:61674151-61674170 | None:intergenic | 40.0% | |
| ! | TGTTTCTGAAAACACCCTCA+AGG | + | chr2_4:61674192-61674211 | Msa0340290:CDS | 40.0% |
| AAAAAACAGTTCATGCTGGG+AGG | + | chr2_4:61674424-61674443 | Msa0340290:intron | 40.0% | |
| ! | GAGAGATGTTGCTCTTTTAG+AGG | + | chr2_4:61674524-61674543 | Msa0340290:CDS | 40.0% |
| CCTAGAATCGCGATCTGTAT+TGG | - | chr2_4:61669327-61669346 | None:intergenic | 45.0% | |
| CCAATACAGATCGCGATTCT+AGG | + | chr2_4:61669324-61669343 | Msa0340290:CDS | 45.0% | |
| ATCGTGAGTTCGACTCCAAA+TGG | - | chr2_4:61669421-61669440 | None:intergenic | 45.0% | |
| AACGACAAGAACAGCGGTTA+TGG | - | chr2_4:61669544-61669563 | None:intergenic | 45.0% | |
| !! | AACCGCTGTTCTTGTCGTTT+TGG | + | chr2_4:61669545-61669564 | Msa0340290:CDS | 45.0% |
| AGCCAAAACGACAAGAACAG+CGG | - | chr2_4:61669550-61669569 | None:intergenic | 45.0% | |
| !!! | CGTTTTGGCTGGACAATATC+AGG | + | chr2_4:61669560-61669579 | Msa0340290:CDS | 45.0% |
| TTACCACTAGACCAATCCCT+TGG | - | chr2_4:61670614-61670633 | None:intergenic | 45.0% | |
| TTATATTGACCTCCCTCCAG+GGG | - | chr2_4:61670685-61670704 | None:intergenic | 45.0% | |
| CCCCTCACCCTAAACTTTAT+TGG | + | chr2_4:61670765-61670784 | Msa0340290:intron | 45.0% | |
| GCTGGTAAACATGTCCTTCA+AGG | + | chr2_4:61670897-61670916 | Msa0340290:CDS | 45.0% | |
| TATGCATTGGGGGACTGATT+TGG | + | chr2_4:61671084-61671103 | Msa0340290:intron | 45.0% | |
| GTCTTGCAGCAGTTATAGTG+GGG | + | chr2_4:61671583-61671602 | Msa0340290:intron | 45.0% | |
| !! | CTCCTTAACTTGTGCCCTTA+GGG | - | chr2_4:61671676-61671695 | None:intergenic | 45.0% |
| !! | TCTCCTTAACTTGTGCCCTT+AGG | - | chr2_4:61671677-61671696 | None:intergenic | 45.0% |
| GTTCCTTAACTTATGCCCCA+AGG | + | chr2_4:61671798-61671817 | Msa0340290:intron | 45.0% | |
| TGCTACAAATAGGCTTGGCT+TGG | - | chr2_4:61671893-61671912 | None:intergenic | 45.0% | |
| TACTGCAGGTATAACTGAGC+TGG | + | chr2_4:61672167-61672186 | Msa0340290:intron | 45.0% | |
| ! | TTTTGAGCCTGCCTTAGTTG+AGG | + | chr2_4:61672269-61672288 | Msa0340290:CDS | 45.0% |
| GAATGGACAGCCAGATTCAT+AGG | - | chr2_4:61672320-61672339 | None:intergenic | 45.0% | |
| ! | GCACACTCATCATTTTCCCA+AGG | - | chr2_4:61672382-61672401 | None:intergenic | 45.0% |
| TAGTTTAGATGACATGGCCG+CGG | + | chr2_4:61672697-61672716 | Msa0340290:intron | 45.0% | |
| TTGACTTTCTCAGTACTCCG+CGG | - | chr2_4:61672717-61672736 | None:intergenic | 45.0% | |
| !! | ATTTTTCCTTTCTGGCAGGG+AGG | + | chr2_4:61672909-61672928 | Msa0340290:intron | 45.0% |
| ATGGGTGTGCATTTCATTGC+AGG | + | chr2_4:61672945-61672964 | Msa0340290:CDS | 45.0% | |
| TGGGTGTGCATTTCATTGCA+GGG | + | chr2_4:61672946-61672965 | Msa0340290:CDS | 45.0% | |
| CATTTGGAGAATGGATGCTC+GGG | + | chr2_4:61673690-61673709 | Msa0340290:CDS | 45.0% | |
| GAATCCACGCTCAATCTGAA+GGG | - | chr2_4:61673911-61673930 | None:intergenic | 45.0% | |
| ! | ACTTCCATTTTGCAGAAGGG+CGG | + | chr2_4:61674465-61674484 | Msa0340290:intron | 45.0% |
| TTAGAGGCAATGCTTGAGTC+TGG | + | chr2_4:61674540-61674559 | Msa0340290:CDS | 45.0% | |
| CTTGAGTCTGGATCAAAGCA+GGG | + | chr2_4:61674552-61674571 | Msa0340290:CDS | 45.0% | |
| ! | CGGACTTGTTCATCTTCACT+TGG | - | chr2_4:61674701-61674720 | None:intergenic | 45.0% |
| AGTGAAGATGAACAAGTCCG+TGG | + | chr2_4:61674701-61674720 | Msa0340290:three_prime_UTR | 45.0% | |
| AGCAGGGAGATCAATGTGAT+TGG | + | chr2_4:61674728-61674747 | Msa0340290:three_prime_UTR | 45.0% | |
| TCCCATGCATCTGTTGATAC+AGG | + | chr2_4:61674882-61674901 | Msa0340290:three_prime_UTR | 45.0% | |
| CCCTGTATCAACAGATGCAT+GGG | - | chr2_4:61674886-61674905 | None:intergenic | 45.0% | |
| CCCATGCATCTGTTGATACA+GGG | + | chr2_4:61674883-61674902 | Msa0340290:three_prime_UTR | 45.0% | |
| TCCCTGTATCAACAGATGCA+TGG | - | chr2_4:61674887-61674906 | None:intergenic | 45.0% | |
| TCAAGTACTCAAAGCGTGTC+AGG | - | chr2_4:61675048-61675067 | None:intergenic | 45.0% | |
| AGATCTCCGAGAGTCTTGGA+AGG | - | chr2_4:61669377-61669396 | None:intergenic | 50.0% | |
| TGTGAGATCTCCGAGAGTCT+TGG | - | chr2_4:61669381-61669400 | None:intergenic | 50.0% | |
| !!! | GCTGTTCTTGTCGTTTTGGC+TGG | + | chr2_4:61669549-61669568 | Msa0340290:CDS | 50.0% |
| !! | ACTCCAAGGGATTGGTCTAG+TGG | + | chr2_4:61670608-61670627 | Msa0340290:intron | 50.0% |
| !! | AACACAGGTGTTGGATCTGG+AGG | + | chr2_4:61670635-61670654 | Msa0340290:intron | 50.0% |
| ! | GGTGTTGGATCTGGAGGTTT+CGG | + | chr2_4:61670641-61670660 | Msa0340290:intron | 50.0% |
| GTGTTGGATCTGGAGGTTTC+GGG | + | chr2_4:61670642-61670661 | Msa0340290:intron | 50.0% | |
| !! | GGCTCCAAGAGCACTTAGAT+AGG | - | chr2_4:61670711-61670730 | None:intergenic | 50.0% |
| TAAGTGCTCTTGGAGCCCTA+AGG | + | chr2_4:61670714-61670733 | Msa0340290:intron | 50.0% | |
| CCAAGGCAGAGAAGACCTTA+GGG | - | chr2_4:61670732-61670751 | None:intergenic | 50.0% | |
| TCCAAGGCAGAGAAGACCTT+AGG | - | chr2_4:61670733-61670752 | None:intergenic | 50.0% | |
| ! | TGCTACTTACCAGATGCTGC+CGG | - | chr2_4:61671126-61671145 | None:intergenic | 50.0% |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | + | chr2_4:61671671-61671690 | Msa0340290:intron | 50.0% |
| TGCCCTTGGGGCATAAGTTA+AGG | - | chr2_4:61671804-61671823 | None:intergenic | 50.0% | |
| GTATTAAGCTGCACGCTAGC+TGG | + | chr2_4:61671925-61671944 | Msa0340290:intron | 50.0% | |
| TCGATTTCTGCTGATGCTCC+TGG | + | chr2_4:61672213-61672232 | Msa0340290:CDS | 50.0% | |
| CGATTTCTGCTGATGCTCCT+GGG | + | chr2_4:61672214-61672233 | Msa0340290:CDS | 50.0% | |
| ATGAAACCTCCCTGCCAGAA+AGG | - | chr2_4:61672918-61672937 | None:intergenic | 50.0% | |
| !! | TCGACAGCTTGTTGGATGTG+AGG | + | chr2_4:61673513-61673532 | Msa0340290:intron | 50.0% |
| !! | ACAGCTTGTTGGATGTGAGG+TGG | + | chr2_4:61673516-61673535 | Msa0340290:intron | 50.0% |
| TAGATCTTGTGGCGAGTCGT+TGG | + | chr2_4:61673874-61673893 | Msa0340290:intron | 50.0% | |
| GGAATCCACGCTCAATCTGA+AGG | - | chr2_4:61673912-61673931 | None:intergenic | 50.0% | |
| CAGATTGAGCGTGGATTCCA+AGG | + | chr2_4:61673913-61673932 | Msa0340290:CDS | 50.0% | |
| CGTGGATTCCAAGGACAACA+TGG | + | chr2_4:61673922-61673941 | Msa0340290:CDS | 50.0% | |
| CCAGGTAACCATGTTGTCCT+TGG | - | chr2_4:61673933-61673952 | None:intergenic | 50.0% | |
| CCAAGGACAACATGGTTACC+TGG | + | chr2_4:61673930-61673949 | Msa0340290:CDS | 50.0% | |
| ACAAAAGAGAGGCGATGCTC+AGG | - | chr2_4:61674495-61674514 | None:intergenic | 50.0% | |
| ! | CATCGCCTCTCTTTTGTCGA+GGG | + | chr2_4:61674498-61674517 | Msa0340290:CDS | 50.0% |
| GCTTGAGTCTGGATCAAAGC+AGG | + | chr2_4:61674551-61674570 | Msa0340290:CDS | 50.0% | |
| AACAAGTCCGTGGATCAAGC+AGG | + | chr2_4:61674711-61674730 | Msa0340290:three_prime_UTR | 50.0% | |
| ACAAGTCCGTGGATCAAGCA+GGG | + | chr2_4:61674712-61674731 | Msa0340290:three_prime_UTR | 50.0% | |
| TGATCTCCCTGCTTGATCCA+CGG | - | chr2_4:61674721-61674740 | None:intergenic | 50.0% | |
| ! | CAGATCGCGATTCTAGGAGC+AGG | + | chr2_4:61669330-61669349 | Msa0340290:CDS | 55.0% |
| CCCTAAGGTCTTCTCTGCCT+TGG | + | chr2_4:61670729-61670748 | Msa0340290:intron | 55.0% | |
| AGGTCTTCTCTGCCTTGGAC+TGG | + | chr2_4:61670734-61670753 | Msa0340290:intron | 55.0% | |
| GGTCTTCTCTGCCTTGGACT+GGG | + | chr2_4:61670735-61670754 | Msa0340290:intron | 55.0% | |
| !! | GCATTGGGGGACTGATTTGG+TGG | + | chr2_4:61671087-61671106 | Msa0340290:intron | 55.0% |
| GAAGAGAAACCGGCAGCATC+TGG | + | chr2_4:61671114-61671133 | Msa0340290:intron | 55.0% | |
| GCTGCACGCTAGCTGGATTA+TGG | + | chr2_4:61671932-61671951 | Msa0340290:intron | 55.0% | |
| TGTCTCCTCCAGATCACCCA+AGG | + | chr2_4:61673728-61673747 | Msa0340290:CDS | 55.0% | |
| ACATGCCTTGGGTGATCTGG+AGG | - | chr2_4:61673736-61673755 | None:intergenic | 55.0% | |
| TCCAGATCACCCAAGGCATG+TGG | + | chr2_4:61673735-61673754 | Msa0340290:intron | 55.0% | |
| ACCACATGCCTTGGGTGATC+TGG | - | chr2_4:61673739-61673758 | None:intergenic | 55.0% | |
| TGGCGAGTCGTTGGCATGAA+TGG | + | chr2_4:61673883-61673902 | Msa0340290:CDS | 55.0% | |
| GGAACCCTTCAGATTGAGCG+TGG | + | chr2_4:61673904-61673923 | Msa0340290:CDS | 55.0% | |
| CTGACCGCCCTTCTGCAAAA+TGG | - | chr2_4:61674472-61674491 | None:intergenic | 55.0% | |
| ! | GCATCGCCTCTCTTTTGTCG+AGG | + | chr2_4:61674497-61674516 | Msa0340290:CDS | 55.0% |
| TCGCACCCTCGACAAAAGAG+AGG | - | chr2_4:61674506-61674525 | None:intergenic | 55.0% | |
| TGTGCACGCGCGCAATTGTC+TGG | + | chr2_4:61670960-61670979 | Msa0340290:intron | 60.0% | |
| CTGAGCTCTGCTAGTGCCCC+TGG | + | chr2_4:61670666-61670685 | Msa0340290:intron | 65.0% | |
| AGCTCTGCTAGTGCCCCTGG+AGG | + | chr2_4:61670669-61670688 | Msa0340290:intron | 65.0% | |
| GCTCTGCTAGTGCCCCTGGA+GGG | + | chr2_4:61670670-61670689 | Msa0340290:intron | 65.0% | |
| GGGGACAGTGACCCAGTCCA+AGG | - | chr2_4:61670749-61670768 | None:intergenic | 65.0% | |
| CTGCTAGTGCCCCTGGAGGG+AGG | + | chr2_4:61670673-61670692 | Msa0340290:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61669185 | 61675101 | 61669185 | ID=Msa0340290;Name=Msa0340290 |
| chr2_4 | mRNA | 61669185 | 61675101 | 61669185 | ID=Msa0340290-mRNA-1;Parent=Msa0340290;Name=Msa0340290-mRNA-1;_AED=0.14;_eAED=0.14;_QI=133|0.9|1|1|0.9|0.81|11|421|350 |
| chr2_4 | exon | 61669185 | 61669581 | 61669185 | ID=Msa0340290-mRNA-1:exon:19418;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61670870 | 61670918 | 61670870 | ID=Msa0340290-mRNA-1:exon:19419;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61672175 | 61672290 | 61672175 | ID=Msa0340290-mRNA-1:exon:19420;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61672359 | 61672472 | 61672359 | ID=Msa0340290-mRNA-1:exon:19421;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61672927 | 61672977 | 61672927 | ID=Msa0340290-mRNA-1:exon:19422;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61673520 | 61673608 | 61673520 | ID=Msa0340290-mRNA-1:exon:19423;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61673689 | 61673749 | 61673689 | ID=Msa0340290-mRNA-1:exon:19424;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61673877 | 61673951 | 61673877 | ID=Msa0340290-mRNA-1:exon:19425;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61674103 | 61674213 | 61674103 | ID=Msa0340290-mRNA-1:exon:19426;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61674480 | 61674603 | 61674480 | ID=Msa0340290-mRNA-1:exon:19427;Parent=Msa0340290-mRNA-1 |
| chr2_4 | exon | 61674682 | 61675101 | 61674682 | ID=Msa0340290-mRNA-1:exon:19428;Parent=Msa0340290-mRNA-1 |
| chr2_4 | five_prime_UTR | 61669185 | 61669317 | 61669185 | ID=Msa0340290-mRNA-1:five_prime_utr;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61669318 | 61669581 | 61669318 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61670870 | 61670918 | 61670870 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61672175 | 61672290 | 61672175 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61672359 | 61672472 | 61672359 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61672927 | 61672977 | 61672927 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61673520 | 61673608 | 61673520 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61673689 | 61673749 | 61673689 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61673877 | 61673951 | 61673877 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61674103 | 61674213 | 61674103 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | CDS | 61674480 | 61674602 | 61674480 | ID=Msa0340290-mRNA-1:cds;Parent=Msa0340290-mRNA-1 |
| chr2_4 | three_prime_UTR | 61674603 | 61674603 | 61674603 | ID=Msa0340290-mRNA-1:three_prime_utr;Parent=Msa0340290-mRNA-1 |
| chr2_4 | three_prime_UTR | 61674682 | 61675101 | 61674682 | ID=Msa0340290-mRNA-1:three_prime_utr;Parent=Msa0340290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
