Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359990 | XP_003609136.2 | 97.308 | 260 | 2 | 2 | 1 | 260 | 6 | 260 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359990 | sp|O22227|MIZ1_ARATH | 52.222 | 180 | 70 | 4 | 92 | 260 | 123 | 297 | 2.09e-59 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359990 | G7JT11 | 97.308 | 260 | 2 | 2 | 1 | 260 | 6 | 260 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625720 | Msa1359990 | 0.810651 | 1.036822e-50 | -8.615850e-47 |
| Msa1327680 | Msa1359990 | 0.813857 | 2.069544e-51 | -8.615850e-47 |
| Msa0529890 | Msa1359990 | 0.810734 | 9.947546e-51 | -8.615850e-47 |
| Msa0585560 | Msa1359990 | 0.802585 | 5.231927e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359990 | MtrunA17_Chr4g0062281 | 97.308 | 260 | 2 | 2 | 1 | 260 | 6 | 260 | 0.0 | 518 |
| Msa1359990 | MtrunA17_Chr2g0307541 | 73.622 | 254 | 56 | 4 | 16 | 260 | 12 | 263 | 7.92e-135 | 380 |
| Msa1359990 | MtrunA17_Chr2g0307001 | 54.231 | 260 | 98 | 5 | 18 | 260 | 19 | 274 | 2.21e-86 | 258 |
| Msa1359990 | MtrunA17_Chr1g0173171 | 52.153 | 209 | 78 | 4 | 74 | 260 | 76 | 284 | 1.39e-60 | 192 |
| Msa1359990 | MtrunA17_Chr3g0129191 | 44.693 | 179 | 93 | 4 | 84 | 260 | 85 | 259 | 1.88e-52 | 171 |
| Msa1359990 | MtrunA17_Chr8g0353821 | 46.108 | 167 | 85 | 2 | 95 | 260 | 85 | 247 | 2.44e-52 | 170 |
| Msa1359990 | MtrunA17_Chr8g0353811 | 45.509 | 167 | 86 | 2 | 95 | 260 | 95 | 257 | 2.05e-50 | 166 |
| Msa1359990 | MtrunA17_Chr3g0133611 | 46.821 | 173 | 77 | 6 | 96 | 259 | 69 | 235 | 3.15e-45 | 152 |
| Msa1359990 | MtrunA17_Chr7g0240291 | 46.012 | 163 | 82 | 3 | 98 | 259 | 65 | 222 | 2.77e-41 | 141 |
| Msa1359990 | MtrunA17_Chr3g0123651 | 37.576 | 165 | 97 | 3 | 98 | 259 | 81 | 242 | 6.89e-34 | 122 |
| Msa1359990 | MtrunA17_Chr8g0381701 | 39.157 | 166 | 91 | 5 | 100 | 259 | 59 | 220 | 9.98e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359990 | AT5G23100.1 | 58.696 | 276 | 85 | 6 | 13 | 260 | 3 | 277 | 5.50e-100 | 293 |
| Msa1359990 | AT3G25640.2 | 66.667 | 180 | 45 | 3 | 92 | 260 | 118 | 293 | 1.60e-78 | 239 |
| Msa1359990 | AT3G25640.1 | 66.667 | 180 | 45 | 3 | 92 | 260 | 92 | 267 | 2.81e-78 | 238 |
| Msa1359990 | AT2G41660.1 | 52.222 | 180 | 70 | 4 | 92 | 260 | 123 | 297 | 2.12e-60 | 193 |
| Msa1359990 | AT2G21990.1 | 49.102 | 167 | 80 | 2 | 95 | 260 | 90 | 252 | 2.98e-54 | 176 |
| Msa1359990 | AT4G39610.1 | 47.059 | 170 | 85 | 2 | 96 | 260 | 95 | 264 | 5.96e-54 | 175 |
| Msa1359990 | AT5G06990.1 | 46.893 | 177 | 78 | 3 | 95 | 260 | 90 | 261 | 1.46e-53 | 174 |
| Msa1359990 | AT2G37880.1 | 50.595 | 168 | 73 | 4 | 98 | 259 | 81 | 244 | 1.19e-48 | 161 |
| Msa1359990 | AT5G42680.2 | 47.561 | 164 | 76 | 5 | 100 | 259 | 79 | 236 | 4.77e-42 | 144 |
| Msa1359990 | AT5G42680.1 | 47.561 | 164 | 76 | 5 | 100 | 259 | 79 | 236 | 4.77e-42 | 144 |
| Msa1359990 | AT1G21050.1 | 44.444 | 162 | 82 | 4 | 100 | 259 | 89 | 244 | 1.66e-40 | 140 |
| Msa1359990 | AT1G21050.2 | 44.444 | 162 | 82 | 4 | 100 | 259 | 125 | 280 | 2.50e-40 | 140 |
| Msa1359990 | AT1G76610.1 | 43.713 | 167 | 78 | 4 | 95 | 259 | 73 | 225 | 9.20e-36 | 127 |
| Msa1359990 | AT5G65340.1 | 41.212 | 165 | 92 | 4 | 100 | 259 | 85 | 249 | 5.94e-34 | 123 |
| Msa1359990 | AT2G22460.1 | 38.889 | 162 | 93 | 2 | 98 | 258 | 85 | 241 | 1.28e-31 | 117 |
Find 50 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTGGGTGATGGTTCTTC+TGG | 0.210488 | tig0016871:+27609 | None:intergenic |
| TTGGTTCGTGAAATGGCTTC+TGG | 0.218997 | tig0016871:-27300 | Msa1359990:CDS |
| TCACGAACCAAACCACTAAT+TGG | 0.265712 | tig0016871:+27312 | None:intergenic |
| CGTGTTGTTGGAACCCTCTT+TGG | 0.284809 | tig0016871:-27414 | Msa1359990:CDS |
| CTTCCAAAAGACACTTTCAT+TGG | 0.317781 | tig0016871:-27656 | Msa1359990:CDS |
| ACACCAGCACCCATTGAAAT+AGG | 0.321507 | tig0016871:+27102 | None:intergenic |
| TGGTGGGTGATGGTTCTTCT+GGG | 0.369853 | tig0016871:+27610 | None:intergenic |
| TAGTGGTTTGGTTCGTGAAA+TGG | 0.373367 | tig0016871:-27307 | Msa1359990:CDS |
| TCAGGAGCACCATTGCTATC+AGG | 0.382273 | tig0016871:+26970 | None:intergenic |
| TGGTTCGTGAAATGGCTTCT+GGG | 0.390455 | tig0016871:-27299 | Msa1359990:CDS |
| TGCAACACCAATTAGTGGTT+TGG | 0.390838 | tig0016871:-27319 | Msa1359990:CDS |
| GGTCTTGGTTCACGTGTTGT+TGG | 0.394137 | tig0016871:-27426 | Msa1359990:CDS |
| TGTCCAATGAAAGTGTCTTT+TGG | 0.397094 | tig0016871:+27653 | None:intergenic |
| GCATGTCCTCCTCCTGAAAC+AGG | 0.405991 | tig0016871:+27540 | None:intergenic |
| GAGCTTGCAACACCAATTAG+TGG | 0.410894 | tig0016871:-27324 | Msa1359990:CDS |
| TCAAATCTACCCTCTGGTCT+TGG | 0.414007 | tig0016871:-27441 | Msa1359990:CDS |
| CTTTGGAGGACTTATTGTAA+TGG | 0.414774 | tig0016871:-27195 | Msa1359990:CDS |
| GCAAGGTTTGAGAGAATTGT+TGG | 0.417883 | tig0016871:-27027 | Msa1359990:CDS |
| TTTCATTGGACAAACAAAGT+TGG | 0.442917 | tig0016871:-27642 | Msa1359990:CDS |
| AGAAAAGCTGGTTGTGAAGT+AGG | 0.455946 | tig0016871:+27351 | None:intergenic |
| GATTGTTGCAAGAGCCACTT+TGG | 0.458144 | tig0016871:-27212 | Msa1359990:CDS |
| TCTTGAATGTGATAAAGTTA+AGG | 0.462515 | tig0016871:-27262 | Msa1359990:CDS |
| AGCAAATAAACACTAAGCTC+AGG | 0.497939 | tig0016871:+26952 | None:intergenic |
| GCTGTTGAGCCTATTTCAAT+GGG | 0.498481 | tig0016871:-27111 | Msa1359990:CDS |
| GAGCCTATTTCAATGGGTGC+TGG | 0.499015 | tig0016871:-27105 | Msa1359990:CDS |
| AGCTGTTGAGCCTATTTCAA+TGG | 0.499933 | tig0016871:-27112 | Msa1359990:CDS |
| CAAGGTTTGAGAGAATTGTT+GGG | 0.500323 | tig0016871:-27026 | Msa1359990:CDS |
| GAACAACCAGCTTCACCACC+TGG | 0.519832 | tig0016871:+27075 | None:intergenic |
| GATAAAGTTAAGGAGAAAGA+AGG | 0.526239 | tig0016871:-27252 | Msa1359990:CDS |
| GAAAAGCTGGTTGTGAAGTA+GGG | 0.527380 | tig0016871:+27352 | None:intergenic |
| GGTGAAGCTGGTTGTTCTGA+TGG | 0.530478 | tig0016871:-27069 | Msa1359990:CDS |
| AAGTTATGTATATGAGAGCA+AGG | 0.549681 | tig0016871:-27044 | Msa1359990:CDS |
| TGTTGCAAGAGCCACTTTGG+AGG | 0.550258 | tig0016871:-27209 | Msa1359990:CDS |
| AACCGTTCAAATCTACCCTC+TGG | 0.551791 | tig0016871:-27447 | Msa1359990:CDS |
| ACGTATTCTTGAAATTGCTA+CGG | 0.556557 | tig0016871:+27494 | None:intergenic |
| GAGGAGGACATGCAGCTACA+AGG | 0.559240 | tig0016871:-27530 | Msa1359990:CDS |
| AGATGGGTCTTGAGGAGTTG+AGG | 0.562495 | tig0016871:+27677 | None:intergenic |
| GCAAGCTCAATGAGAAAAGC+TGG | 0.564770 | tig0016871:+27339 | None:intergenic |
| TCGTGAAATGGCTTCTGGGT+TGG | 0.566947 | tig0016871:-27295 | Msa1359990:CDS |
| ACCCTCTTTGGTTACCGTCG+TGG | 0.572266 | tig0016871:-27402 | Msa1359990:CDS |
| GACCAGAGGGTAGATTTGAA+CGG | 0.580928 | tig0016871:+27445 | None:intergenic |
| CGAAATGAACATGGCCACGA+CGG | 0.590275 | tig0016871:+27388 | None:intergenic |
| GCCACGACGGTAACCAAAGA+GGG | 0.602309 | tig0016871:+27401 | None:intergenic |
| TCTGAAAAGCGAAATGAACA+TGG | 0.608653 | tig0016871:+27379 | None:intergenic |
| GGCCACGACGGTAACCAAAG+AGG | 0.632589 | tig0016871:+27400 | None:intergenic |
| TTTGGTAATAGAAGAGAATG+TGG | 0.634366 | tig0016871:-27159 | Msa1359990:CDS |
| TTACAATAAGTCCTCCAAAG+TGG | 0.641562 | tig0016871:+27198 | None:intergenic |
| ACACGTGAACCAAGACCAGA+GGG | 0.658866 | tig0016871:+27432 | None:intergenic |
| AACACGTGAACCAAGACCAG+AGG | 0.689373 | tig0016871:+27431 | None:intergenic |
| ATGATGAATCCTGATAGCAA+TGG | 0.728571 | tig0016871:-26979 | Msa1359990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTGTTCTTCTATGATTT+TGG | + | tig0016871:27063-27082 | None:intergenic | 25.0% |
| !! | AGGTTTTTCTTCATGTTTTT+TGG | + | tig0016871:27087-27106 | None:intergenic | 25.0% |
| !!! | AAGAATACGTTCTGTTTTAA+CGG | - | tig0016871:27163-27182 | Msa1359990:CDS | 25.0% |
| ! | TCTTGAATGTGATAAAGTTA+AGG | - | tig0016871:27382-27401 | Msa1359990:CDS | 25.0% |
| !! | TATTGTAATGGAAAAAAGTG+TGG | - | tig0016871:27461-27480 | Msa1359990:CDS | 25.0% |
| !!! | GTTTTGTTCTTCTATGATTT+TGG | + | tig0016871:27063-27082 | None:intergenic | 25.0% |
| !! | AGGTTTTTCTTCATGTTTTT+TGG | + | tig0016871:27087-27106 | None:intergenic | 25.0% |
| !!! | AAGAATACGTTCTGTTTTAA+CGG | - | tig0016871:27163-27182 | Msa1359990:CDS | 25.0% |
| ! | TCTTGAATGTGATAAAGTTA+AGG | - | tig0016871:27382-27401 | Msa1359990:CDS | 25.0% |
| !! | TATTGTAATGGAAAAAAGTG+TGG | - | tig0016871:27461-27480 | Msa1359990:CDS | 25.0% |
| TTTCATTGGACAAACAAAGT+TGG | - | tig0016871:27002-27021 | Msa1359990:CDS | 30.0% | |
| ! | TTCTTCTATGATTTTGGACA+TGG | + | tig0016871:27057-27076 | None:intergenic | 30.0% |
| ACGTATTCTTGAAATTGCTA+CGG | + | tig0016871:27153-27172 | None:intergenic | 30.0% | |
| GATAAAGTTAAGGAGAAAGA+AGG | - | tig0016871:27392-27411 | Msa1359990:CDS | 30.0% | |
| ! | AATGGAAAAAAGTGTGGATT+TGG | - | tig0016871:27467-27486 | Msa1359990:CDS | 30.0% |
| ! | TTTGGTAATAGAAGAGAATG+TGG | - | tig0016871:27485-27504 | Msa1359990:CDS | 30.0% |
| AGAATGTGGTGAAAAAGATT+GGG | - | tig0016871:27499-27518 | Msa1359990:CDS | 30.0% | |
| AAGTTATGTATATGAGAGCA+AGG | - | tig0016871:27600-27619 | Msa1359990:CDS | 30.0% | |
| TTTCATTGGACAAACAAAGT+TGG | - | tig0016871:27002-27021 | Msa1359990:CDS | 30.0% | |
| ! | TTCTTCTATGATTTTGGACA+TGG | + | tig0016871:27057-27076 | None:intergenic | 30.0% |
| ACGTATTCTTGAAATTGCTA+CGG | + | tig0016871:27153-27172 | None:intergenic | 30.0% | |
| GATAAAGTTAAGGAGAAAGA+AGG | - | tig0016871:27392-27411 | Msa1359990:CDS | 30.0% | |
| ! | AATGGAAAAAAGTGTGGATT+TGG | - | tig0016871:27467-27486 | Msa1359990:CDS | 30.0% |
| ! | TTTGGTAATAGAAGAGAATG+TGG | - | tig0016871:27485-27504 | Msa1359990:CDS | 30.0% |
| AGAATGTGGTGAAAAAGATT+GGG | - | tig0016871:27499-27518 | Msa1359990:CDS | 30.0% | |
| AAGTTATGTATATGAGAGCA+AGG | - | tig0016871:27600-27619 | Msa1359990:CDS | 30.0% | |
| !!! | GAAAGTGTCTTTTGGAAGAT+GGG | + | tig0016871:26986-27005 | None:intergenic | 35.0% |
| !!! | TGAAAGTGTCTTTTGGAAGA+TGG | + | tig0016871:26987-27006 | None:intergenic | 35.0% |
| CTTCCAAAAGACACTTTCAT+TGG | - | tig0016871:26988-27007 | Msa1359990:CDS | 35.0% | |
| !!! | TGTCCAATGAAAGTGTCTTT+TGG | + | tig0016871:26994-27013 | None:intergenic | 35.0% |
| ! | TCTATGATTTTGGACATGGT+GGG | + | tig0016871:27053-27072 | None:intergenic | 35.0% |
| ! | TTCTATGATTTTGGACATGG+TGG | + | tig0016871:27054-27073 | None:intergenic | 35.0% |
| CATGAAGAAAAACCTGTTTC+AGG | - | tig0016871:27092-27111 | Msa1359990:CDS | 35.0% | |
| TCTGAAAAGCGAAATGAACA+TGG | + | tig0016871:27268-27287 | None:intergenic | 35.0% | |
| TTACAATAAGTCCTCCAAAG+TGG | + | tig0016871:27449-27468 | None:intergenic | 35.0% | |
| ! | CTTTGGAGGACTTATTGTAA+TGG | - | tig0016871:27449-27468 | Msa1359990:CDS | 35.0% |
| GAGAATGTGGTGAAAAAGAT+TGG | - | tig0016871:27498-27517 | Msa1359990:CDS | 35.0% | |
| CAAGGTTTGAGAGAATTGTT+GGG | - | tig0016871:27618-27637 | Msa1359990:CDS | 35.0% | |
| ATGATGAATCCTGATAGCAA+TGG | - | tig0016871:27665-27684 | Msa1359990:CDS | 35.0% | |
| AGCAAATAAACACTAAGCTC+AGG | + | tig0016871:27695-27714 | None:intergenic | 35.0% | |
| !!! | GAAAGTGTCTTTTGGAAGAT+GGG | + | tig0016871:26986-27005 | None:intergenic | 35.0% |
| !!! | TGAAAGTGTCTTTTGGAAGA+TGG | + | tig0016871:26987-27006 | None:intergenic | 35.0% |
| CTTCCAAAAGACACTTTCAT+TGG | - | tig0016871:26988-27007 | Msa1359990:CDS | 35.0% | |
| !!! | TGTCCAATGAAAGTGTCTTT+TGG | + | tig0016871:26994-27013 | None:intergenic | 35.0% |
| ! | TCTATGATTTTGGACATGGT+GGG | + | tig0016871:27053-27072 | None:intergenic | 35.0% |
| ! | TTCTATGATTTTGGACATGG+TGG | + | tig0016871:27054-27073 | None:intergenic | 35.0% |
| CATGAAGAAAAACCTGTTTC+AGG | - | tig0016871:27092-27111 | Msa1359990:CDS | 35.0% | |
| TCTGAAAAGCGAAATGAACA+TGG | + | tig0016871:27268-27287 | None:intergenic | 35.0% | |
| TTACAATAAGTCCTCCAAAG+TGG | + | tig0016871:27449-27468 | None:intergenic | 35.0% | |
| ! | CTTTGGAGGACTTATTGTAA+TGG | - | tig0016871:27449-27468 | Msa1359990:CDS | 35.0% |
| GAGAATGTGGTGAAAAAGAT+TGG | - | tig0016871:27498-27517 | Msa1359990:CDS | 35.0% | |
| CAAGGTTTGAGAGAATTGTT+GGG | - | tig0016871:27618-27637 | Msa1359990:CDS | 35.0% | |
| ATGATGAATCCTGATAGCAA+TGG | - | tig0016871:27665-27684 | Msa1359990:CDS | 35.0% | |
| AGCAAATAAACACTAAGCTC+AGG | + | tig0016871:27695-27714 | None:intergenic | 35.0% | |
| GAAGAAAAACCTGTTTCAGG+AGG | - | tig0016871:27095-27114 | Msa1359990:CDS | 40.0% | |
| GAAAAGCTGGTTGTGAAGTA+GGG | + | tig0016871:27295-27314 | None:intergenic | 40.0% | |
| AGAAAAGCTGGTTGTGAAGT+AGG | + | tig0016871:27296-27315 | None:intergenic | 40.0% | |
| TGCAACACCAATTAGTGGTT+TGG | - | tig0016871:27325-27344 | Msa1359990:CDS | 40.0% | |
| TCACGAACCAAACCACTAAT+TGG | + | tig0016871:27335-27354 | None:intergenic | 40.0% | |
| !! | TAGTGGTTTGGTTCGTGAAA+TGG | - | tig0016871:27337-27356 | Msa1359990:CDS | 40.0% |
| AGCTGTTGAGCCTATTTCAA+TGG | - | tig0016871:27532-27551 | Msa1359990:CDS | 40.0% | |
| GCTGTTGAGCCTATTTCAAT+GGG | - | tig0016871:27533-27552 | Msa1359990:CDS | 40.0% | |
| GCAAGGTTTGAGAGAATTGT+TGG | - | tig0016871:27617-27636 | Msa1359990:CDS | 40.0% | |
| GAAGAAAAACCTGTTTCAGG+AGG | - | tig0016871:27095-27114 | Msa1359990:CDS | 40.0% | |
| GAAAAGCTGGTTGTGAAGTA+GGG | + | tig0016871:27295-27314 | None:intergenic | 40.0% | |
| AGAAAAGCTGGTTGTGAAGT+AGG | + | tig0016871:27296-27315 | None:intergenic | 40.0% | |
| TGCAACACCAATTAGTGGTT+TGG | - | tig0016871:27325-27344 | Msa1359990:CDS | 40.0% | |
| TCACGAACCAAACCACTAAT+TGG | + | tig0016871:27335-27354 | None:intergenic | 40.0% | |
| !! | TAGTGGTTTGGTTCGTGAAA+TGG | - | tig0016871:27337-27356 | Msa1359990:CDS | 40.0% |
| AGCTGTTGAGCCTATTTCAA+TGG | - | tig0016871:27532-27551 | Msa1359990:CDS | 40.0% | |
| GCTGTTGAGCCTATTTCAAT+GGG | - | tig0016871:27533-27552 | Msa1359990:CDS | 40.0% | |
| GCAAGGTTTGAGAGAATTGT+TGG | - | tig0016871:27617-27636 | Msa1359990:CDS | 40.0% | |
| !! | CTTTTGGAAGATGGGTCTTG+AGG | + | tig0016871:26978-26997 | None:intergenic | 45.0% |
| !!! | ATTTTGGACATGGTGGGTGA+TGG | + | tig0016871:27047-27066 | None:intergenic | 45.0% |
| GAAAAACCTGTTTCAGGAGG+AGG | - | tig0016871:27098-27117 | Msa1359990:CDS | 45.0% | |
| AACCGTTCAAATCTACCCTC+TGG | - | tig0016871:27197-27216 | Msa1359990:CDS | 45.0% | |
| GACCAGAGGGTAGATTTGAA+CGG | + | tig0016871:27202-27221 | None:intergenic | 45.0% | |
| TCAAATCTACCCTCTGGTCT+TGG | - | tig0016871:27203-27222 | Msa1359990:CDS | 45.0% | |
| GCAAGCTCAATGAGAAAAGC+TGG | + | tig0016871:27308-27327 | None:intergenic | 45.0% | |
| GAGCTTGCAACACCAATTAG+TGG | - | tig0016871:27320-27339 | Msa1359990:CDS | 45.0% | |
| ! | TTGGTTCGTGAAATGGCTTC+TGG | - | tig0016871:27344-27363 | Msa1359990:CDS | 45.0% |
| TGGTTCGTGAAATGGCTTCT+GGG | - | tig0016871:27345-27364 | Msa1359990:CDS | 45.0% | |
| GATTGTTGCAAGAGCCACTT+TGG | - | tig0016871:27432-27451 | Msa1359990:CDS | 45.0% | |
| ACACCAGCACCCATTGAAAT+AGG | + | tig0016871:27545-27564 | None:intergenic | 45.0% | |
| !! | CTTTTGGAAGATGGGTCTTG+AGG | + | tig0016871:26978-26997 | None:intergenic | 45.0% |
| !!! | ATTTTGGACATGGTGGGTGA+TGG | + | tig0016871:27047-27066 | None:intergenic | 45.0% |
| GAAAAACCTGTTTCAGGAGG+AGG | - | tig0016871:27098-27117 | Msa1359990:CDS | 45.0% | |
| AACCGTTCAAATCTACCCTC+TGG | - | tig0016871:27197-27216 | Msa1359990:CDS | 45.0% | |
| GACCAGAGGGTAGATTTGAA+CGG | + | tig0016871:27202-27221 | None:intergenic | 45.0% | |
| TCAAATCTACCCTCTGGTCT+TGG | - | tig0016871:27203-27222 | Msa1359990:CDS | 45.0% | |
| GCAAGCTCAATGAGAAAAGC+TGG | + | tig0016871:27308-27327 | None:intergenic | 45.0% | |
| GAGCTTGCAACACCAATTAG+TGG | - | tig0016871:27320-27339 | Msa1359990:CDS | 45.0% | |
| ! | TTGGTTCGTGAAATGGCTTC+TGG | - | tig0016871:27344-27363 | Msa1359990:CDS | 45.0% |
| TGGTTCGTGAAATGGCTTCT+GGG | - | tig0016871:27345-27364 | Msa1359990:CDS | 45.0% | |
| GATTGTTGCAAGAGCCACTT+TGG | - | tig0016871:27432-27451 | Msa1359990:CDS | 45.0% | |
| ACACCAGCACCCATTGAAAT+AGG | + | tig0016871:27545-27564 | None:intergenic | 45.0% | |
| AGATGGGTCTTGAGGAGTTG+AGG | + | tig0016871:26970-26989 | None:intergenic | 50.0% | |
| ! | TGGTGGGTGATGGTTCTTCT+GGG | + | tig0016871:27037-27056 | None:intergenic | 50.0% |
| !! | ATGGTGGGTGATGGTTCTTC+TGG | + | tig0016871:27038-27057 | None:intergenic | 50.0% |
| ACACGTGAACCAAGACCAGA+GGG | + | tig0016871:27215-27234 | None:intergenic | 50.0% | |
| AACACGTGAACCAAGACCAG+AGG | + | tig0016871:27216-27235 | None:intergenic | 50.0% | |
| GGTCTTGGTTCACGTGTTGT+TGG | - | tig0016871:27218-27237 | Msa1359990:CDS | 50.0% | |
| ! | CGTGTTGTTGGAACCCTCTT+TGG | - | tig0016871:27230-27249 | Msa1359990:CDS | 50.0% |
| CGAAATGAACATGGCCACGA+CGG | + | tig0016871:27259-27278 | None:intergenic | 50.0% | |
| TCGTGAAATGGCTTCTGGGT+TGG | - | tig0016871:27349-27368 | Msa1359990:CDS | 50.0% | |
| ! | TGTTGCAAGAGCCACTTTGG+AGG | - | tig0016871:27435-27454 | Msa1359990:CDS | 50.0% |
| GAGCCTATTTCAATGGGTGC+TGG | - | tig0016871:27539-27558 | Msa1359990:CDS | 50.0% | |
| GGTGAAGCTGGTTGTTCTGA+TGG | - | tig0016871:27575-27594 | Msa1359990:CDS | 50.0% | |
| !! | TCAGGAGCACCATTGCTATC+AGG | + | tig0016871:27677-27696 | None:intergenic | 50.0% |
| AGATGGGTCTTGAGGAGTTG+AGG | + | tig0016871:26970-26989 | None:intergenic | 50.0% | |
| ! | TGGTGGGTGATGGTTCTTCT+GGG | + | tig0016871:27037-27056 | None:intergenic | 50.0% |
| !! | ATGGTGGGTGATGGTTCTTC+TGG | + | tig0016871:27038-27057 | None:intergenic | 50.0% |
| ACACGTGAACCAAGACCAGA+GGG | + | tig0016871:27215-27234 | None:intergenic | 50.0% | |
| AACACGTGAACCAAGACCAG+AGG | + | tig0016871:27216-27235 | None:intergenic | 50.0% | |
| GGTCTTGGTTCACGTGTTGT+TGG | - | tig0016871:27218-27237 | Msa1359990:CDS | 50.0% | |
| ! | CGTGTTGTTGGAACCCTCTT+TGG | - | tig0016871:27230-27249 | Msa1359990:CDS | 50.0% |
| CGAAATGAACATGGCCACGA+CGG | + | tig0016871:27259-27278 | None:intergenic | 50.0% | |
| TCGTGAAATGGCTTCTGGGT+TGG | - | tig0016871:27349-27368 | Msa1359990:CDS | 50.0% | |
| ! | TGTTGCAAGAGCCACTTTGG+AGG | - | tig0016871:27435-27454 | Msa1359990:CDS | 50.0% |
| GAGCCTATTTCAATGGGTGC+TGG | - | tig0016871:27539-27558 | Msa1359990:CDS | 50.0% | |
| GGTGAAGCTGGTTGTTCTGA+TGG | - | tig0016871:27575-27594 | Msa1359990:CDS | 50.0% | |
| !! | TCAGGAGCACCATTGCTATC+AGG | + | tig0016871:27677-27696 | None:intergenic | 50.0% |
| GCATGTCCTCCTCCTGAAAC+AGG | + | tig0016871:27107-27126 | None:intergenic | 55.0% | |
| GAGGAGGACATGCAGCTACA+AGG | - | tig0016871:27114-27133 | Msa1359990:CDS | 55.0% | |
| ACCCTCTTTGGTTACCGTCG+TGG | - | tig0016871:27242-27261 | Msa1359990:CDS | 55.0% | |
| GCCACGACGGTAACCAAAGA+GGG | + | tig0016871:27246-27265 | None:intergenic | 55.0% | |
| !!! | ATGGGTGCTGGTGTTTTGCC+AGG | - | tig0016871:27551-27570 | Msa1359990:CDS | 55.0% |
| ! | GTTTTGCCAGGTGGTGAAGC+TGG | - | tig0016871:27563-27582 | Msa1359990:CDS | 55.0% |
| GAACAACCAGCTTCACCACC+TGG | + | tig0016871:27572-27591 | None:intergenic | 55.0% | |
| GCATGTCCTCCTCCTGAAAC+AGG | + | tig0016871:27107-27126 | None:intergenic | 55.0% | |
| GAGGAGGACATGCAGCTACA+AGG | - | tig0016871:27114-27133 | Msa1359990:CDS | 55.0% | |
| ACCCTCTTTGGTTACCGTCG+TGG | - | tig0016871:27242-27261 | Msa1359990:CDS | 55.0% | |
| GCCACGACGGTAACCAAAGA+GGG | + | tig0016871:27246-27265 | None:intergenic | 55.0% | |
| !!! | ATGGGTGCTGGTGTTTTGCC+AGG | - | tig0016871:27551-27570 | Msa1359990:CDS | 55.0% |
| ! | GTTTTGCCAGGTGGTGAAGC+TGG | - | tig0016871:27563-27582 | Msa1359990:CDS | 55.0% |
| GAACAACCAGCTTCACCACC+TGG | + | tig0016871:27572-27591 | None:intergenic | 55.0% | |
| GGCCACGACGGTAACCAAAG+AGG | + | tig0016871:27247-27266 | None:intergenic | 60.0% | |
| !!! | GGTGCTGGTGTTTTGCCAGG+TGG | - | tig0016871:27554-27573 | Msa1359990:CDS | 60.0% |
| GGCCACGACGGTAACCAAAG+AGG | + | tig0016871:27247-27266 | None:intergenic | 60.0% | |
| !!! | GGTGCTGGTGTTTTGCCAGG+TGG | - | tig0016871:27554-27573 | Msa1359990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016871 | gene | 26942 | 27724 | 26942 | ID=Msa1359990;Name=Msa1359990 |
| tig0016871 | mRNA | 26942 | 27724 | 26942 | ID=Msa1359990-mRNA-1;Parent=Msa1359990;Name=Msa1359990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|260 |
| tig0016871 | exon | 26942 | 27724 | 26942 | ID=Msa1359990-mRNA-1:exon:11673;Parent=Msa1359990-mRNA-1 |
| tig0016871 | CDS | 26942 | 27724 | 26942 | ID=Msa1359990-mRNA-1:cds;Parent=Msa1359990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
