AlfalfaGEDB | Msa1327680

M. sativa cultivar zhongmu-4 / Msa1327680

KEGG: K16287
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF02902.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1327680	sp\|Q2PS26\|ULP1D_ARATH	51.923	312	131	5	3	311	285	580	4.21e-114	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1327680	A0A396GRP8	93.007	429	11	1	1	410	238	666	0.0	816

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001780	Msa1327680	0.815711	8.037106e-52	-8.615850e-47
Msa0003700	Msa1327680	0.807870	4.092826e-50	-8.615850e-47
Msa0003890	Msa1327680	0.849971	2.295394e-60	-8.615850e-47
Msa0006000	Msa1327680	0.800459	1.427406e-48	-8.615850e-47
Msa0006070	Msa1327680	0.811327	7.401946e-51	-8.615850e-47
Msa0006110	Msa1327680	0.823297	1.494505e-53	-8.615850e-47
Msa0008670	Msa1327680	0.801280	9.699846e-49	-8.615850e-47
Msa0009180	Msa1327680	0.811462	6.917500e-51	-8.615850e-47
Msa0011170	Msa1327680	0.833245	5.958894e-56	-8.615850e-47
Msa0012060	Msa1327680	0.837102	6.336471e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1327680	MtrunA17_Chr8g0365341	93.007	429	11	1	1	410	238	666	0.0	816
Msa1327680	MtrunA17_Chr3g0132991	31.579	361	184	13	33	368	360	682	5.45e-36	140
Msa1327680	MtrunA17_Chr2g0279601	36.293	259	134	9	70	310	393	638	1.69e-34	136
Msa1327680	MtrunA17_Chr2g0295891	28.205	195	106	11	74	260	261	429	1.85e-15	77.8
Msa1327680	MtrunA17_Chr4g0067411	29.082	196	103	10	74	260	288	456	1.64e-14	75.1
Msa1327680	MtrunA17_Chr5g0427421	31.892	185	107	9	183	358	16	190	7.26e-14	72.8
Msa1327680	MtrunA17_Chr3g0116361	35.878	131	70	2	145	272	138	257	3.65e-13	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1327680	AT1G60220.1	51.923	312	131	5	3	311	285	580	4.28e-115	348
Msa1327680	AT1G10570.3	50.685	292	132	6	30	315	155	440	6.52e-99	302
Msa1327680	AT1G10570.2	50.685	292	132	6	30	315	285	570	1.66e-97	302
Msa1327680	AT1G10570.1	50.685	292	132	6	30	315	286	571	1.88e-97	302
Msa1327680	AT1G09730.2	34.043	282	144	11	58	310	367	635	7.29e-36	140
Msa1327680	AT1G09730.1	34.043	282	144	11	58	310	399	667	8.09e-36	140
Msa1327680	AT4G33620.1	30.645	248	148	7	70	304	301	537	1.64e-28	118
Msa1327680	AT4G15880.1	30.303	198	105	9	74	264	288	459	1.66e-17	84.7
Msa1327680	AT4G00690.1	25.592	211	125	7	74	277	139	324	1.09e-16	81.3
Msa1327680	AT3G48480.1	31.447	159	94	5	147	303	149	294	4.68e-13	69.7

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Find 76 sgRNAs with CRISPR-Local

Find 501 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGTCCATACAAGAA+AGG	0.506641	8_4:+45049628	Msa1327680:three_prime_UTR
AAAACTTACTCCTGGTGTAT+TGG	0.386530	8_4:-45044111	None:intergenic
AAACAGGTCCATACAAGAAA+GGG	0.472198	8_4:+45049629	Msa1327680:three_prime_UTR
AAAGTTCAGAAGGTGGTGGA+AGG	0.533933	8_4:+45044053	Msa1327680:CDS
AACAGGTCCATACAAGAAAG+GGG	0.638584	8_4:+45049630	Msa1327680:three_prime_UTR
AACTTCCTACCCAAAACTAC+CGG	0.578387	8_4:-45049591	None:intergenic
AAGATTTAACAAATAATCAG+AGG	0.595195	8_4:+45049036	Msa1327680:CDS
AAGCACCAACATCAACTATA+TGG	0.357303	8_4:-45049539	None:intergenic
AAGGACTCTTCGATCGAAGA+TGG	0.544420	8_4:+45049466	Msa1327680:CDS
AAGTTCAGAAGGTGGTGGAA+GGG	0.603995	8_4:+45044054	Msa1327680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCACTTGTAAGCCATTA+AGG	-	chr8_4:45041877-45041896	None:intergenic	30.0%
TCAAAATTCCCTTACTATTC+AGG	-	chr8_4:45042039-45042058	None:intergenic	30.0%
TTTCAGTTTGAAAGAAGCTA+AGG	+	chr8_4:45042134-45042153	Msa1327680:intron	30.0%
ATGTTCTAATATTACCGTGA+TGG	-	chr8_4:45042168-45042187	None:intergenic	30.0%
TAACAAATTTCAACACACTC+GGG	-	chr8_4:45042271-45042290	None:intergenic	30.0%
GTAACAAATTTCAACACACT+CGG	-	chr8_4:45042272-45042291	None:intergenic	30.0%
ATTGAAGCTCAATTCAGAAA+AGG	-	chr8_4:45042415-45042434	None:intergenic	30.0%
TAAATTGAAGTGAATGAGCT+CGG	-	chr8_4:45042451-45042470	None:intergenic	30.0%
CACATTCAGTAACACAAAAA+AGG	-	chr8_4:45042908-45042927	None:intergenic	30.0%
GGATCTTAAAAAGAGAATGT+GGG	+	chr8_4:45043143-45043162	Msa1327680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	45041715	45049650	45041715	ID=Msa1327680;Name=Msa1327680
chr8_4	mRNA	45041715	45049650	45041715	ID=Msa1327680-mRNA-1;Parent=Msa1327680;Name=Msa1327680-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.11\|0.1\|1\|1\|0.9\|10\|128\|410
chr8_4	exon	45041715	45041762	45041715	ID=Msa1327680-mRNA-1:exon:12581;Parent=Msa1327680-mRNA-1
chr8_4	exon	45041922	45042043	45041922	ID=Msa1327680-mRNA-1:exon:12582;Parent=Msa1327680-mRNA-1
chr8_4	exon	45042140	45042172	45042140	ID=Msa1327680-mRNA-1:exon:12583;Parent=Msa1327680-mRNA-1
chr8_4	exon	45042261	45042356	45042261	ID=Msa1327680-mRNA-1:exon:12584;Parent=Msa1327680-mRNA-1
chr8_4	exon	45042632	45042725	45042632	ID=Msa1327680-mRNA-1:exon:12585;Parent=Msa1327680-mRNA-1
chr8_4	exon	45044027	45044124	45044027	ID=Msa1327680-mRNA-1:exon:12586;Parent=Msa1327680-mRNA-1
chr8_4	exon	45046025	45046147	45046025	ID=Msa1327680-mRNA-1:exon:12587;Parent=Msa1327680-mRNA-1
chr8_4	exon	45047981	45048095	45047981	ID=Msa1327680-mRNA-1:exon:12588;Parent=Msa1327680-mRNA-1
chr8_4	exon	45048942	45049058	45048942	ID=Msa1327680-mRNA-1:exon:12589;Parent=Msa1327680-mRNA-1
chr8_4	exon	45049136	45049650	45049136	ID=Msa1327680-mRNA-1:exon:12590;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45041715	45041762	45041715	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45041922	45042043	45041922	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45042140	45042172	45042140	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45042261	45042356	45042261	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45042632	45042725	45042632	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45044027	45044124	45044027	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45046025	45046147	45046025	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45047981	45048095	45047981	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45048942	45049058	45048942	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	CDS	45049136	45049522	45049136	ID=Msa1327680-mRNA-1:cds;Parent=Msa1327680-mRNA-1
chr8_4	three_prime_UTR	45049523	45049650	45049523	ID=Msa1327680-mRNA-1:three_prime_utr;Parent=Msa1327680-mRNA-1

Gene Sequence

>Msa1327680

AAGGGTGCATTTCAGACAAGTCAATCAGATGGCTCAAGGTCCAGGAAGGGTCAAGTTCAACCCATTGTTCTTGATGTGGACGACGACGATGAAGACGACATTGAAGACGACGAAGATGACAGCGGAGATCCTCATATTCTGGATAAAACAGAAAATAAAGTTCCTGAATATTTGAAAGAAGCTAAGGTTTATTTTCCATCACGAGATGATCCCGAGTGTGTTGAAATTTGTTACAATGACATGGAATGCCTTGCTCCTGAAGGTTACTTAACATCAACTATCATGAACTTTTACATACGATATTTGCAGCAGCAAGTATCTCTGACAACATCTGACTGCCATTTTTTCAACACATATTTCTACAAGAAACTTAAAGAAGCTGTCTCCTGCAAGGAAAGCAACAAAGAGACAATTTTTTCAAAGTTCAGAAGGTGGTGGAAGGGTGTAAATCTTTTTGAGAAGGCATATGTTTTGATTCCAATACACCAGGATCTTCATTGGAGTTTGATCATTATTTGTATCCCGGACAAAGATGATGAATCAGGACCGATCATACTTCATTTGGATTCTTTGGGTCTTCACTCGAGTCGATCAGTTTTTGATAATATTAAAAGATATTTGATTGAAGAAAAGAACTATTTGAGTCGAGAATGCGCGTCTTCAGATGTTCCGATGGCAGACAGAATATGGAAGAGTCTTTCACGTAGAATTGAAACTCAAGTCATAGCCGTTCCCCAACAGAAGAATGAGTATGACTGTGGTCTTTTTGTACTGTATTTCATTGAGCGTTTCATAGGAGAGGCACCTGAAAGACTGAAAAAGAAAGATTTAACAAATAATCAGAGGTTTGGCAAGCGATGGTTCAAACCTGAAGAGGCATCCAGTTTGAGAGTGAAAATCCACAAGTTGCTTGTAGCAGAACTACGTAATTCAATCAAGCGTGATGGCATCGCAGAATCTTCTCCCTCATCTTCTGGCGCTGCAACTGAATGCGTTGAGACTGCCAAGACAGAATCGTCTCTGTCATCTGCTGGCGCTGCAGCTGAATGCGTTGAGACTGCCAAGACAGAATCTTCTCCGTCATCTGCTGGCGCTGCAATCGAATGTGTTGAGATTGCCAAGACAGAATCTTCGCCGTCATCTGCTGGTGTTGCAAATGAATGTGTTGAGACTGCCAAGGACTCTTCGATCGAAGATGGCATCACGAGTTGCAATTCTGACATTATTGAATGA

Protein sequence

>Msa1327680

KGAFQTSQSDGSRSRKGQVQPIVLDVDDDDEDDIEDDEDDSGDPHILDKTENKVPEYLKEAKVYFPSRDDPECVEICYNDMECLAPEGYLTSTIMNFYIRYLQQQVSLTTSDCHFFNTYFYKKLKEAVSCKESNKETIFSKFRRWWKGVNLFEKAYVLIPIHQDLHWSLIIICIPDKDDESGPIILHLDSLGLHSSRSVFDNIKRYLIEEKNYLSRECASSDVPMADRIWKSLSRRIETQVIAVPQQKNEYDCGLFVLYFIERFIGEAPERLKKKDLTNNQRFGKRWFKPEEASSLRVKIHKLLVAELRNSIKRDGIAESSPSSSGAATECVETAKTESSLSSAGAAAECVETAKTESSPSSAGAAIECVEIAKTESSPSSAGVANECVETAKDSSIEDGITSCNSDIIE*