AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0585560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585560 MtrunA17_Chr4g0001231 97.604 626 15 0 1 626 1 626 0.0 1244
Msa0585560 MtrunA17_Chr4g0070931 87.599 629 74 4 1 625 1 629 0.0 1059
Msa0585560 MtrunA17_Chr4g0074301 86.804 629 79 4 1 625 1 629 0.0 1044
Msa0585560 MtrunA17_Chr4g0074271 76.826 397 71 4 1 393 18 397 0.0 543
Msa0585560 MtrunA17_Chr4g0074271 39.910 223 121 4 395 617 241 450 2.70e-30 124
Msa0585560 MtrunA17_Chr3g0111661 43.302 642 339 9 1 622 1 637 3.39e-172 504
Msa0585560 MtrunA17_Chr5g0435301 40.979 654 348 13 5 625 472 1120 2.51e-144 447
Msa0585560 MtrunA17_Chr5g0435301 44.231 104 54 4 1 102 1 102 3.24e-16 82.8
Msa0585560 MtrunA17_Chr5g0435301 43.023 86 43 3 19 103 131 211 3.80e-14 76.3
Msa0585560 MtrunA17_Chr5g0435301 41.860 86 45 2 19 103 247 328 5.40e-14 75.9
Msa0585560 MtrunA17_Chr5g0435301 40.426 94 52 3 5 94 353 446 6.20e-12 68.9
Msa0585560 MtrunA17_Chr2g0328251 35.673 684 347 15 13 614 10 682 1.99e-108 342
Msa0585560 MtrunA17_Chr2g0328241 35.285 649 343 13 31 614 30 666 1.83e-101 323
Msa0585560 MtrunA17_Chr4g0024031 32.635 668 343 15 33 624 32 668 1.23e-87 286
Msa0585560 MtrunA17_Chr2g0327251 35.539 529 261 8 115 614 79 556 4.82e-80 263
Msa0585560 MtrunA17_Chr4g0071151 44.275 262 115 4 381 624 3 251 1.16e-62 208
Msa0585560 MtrunA17_Chr3g0111741 50.685 219 104 4 408 625 123 338 6.45e-56 193
Msa0585560 MtrunA17_Chr2g0328231 46.025 239 110 5 391 614 120 354 1.27e-54 190
Msa0585560 MtrunA17_Chr3g0111731 42.920 226 115 4 401 625 2 214 3.74e-42 152
Msa0585560 MtrunA17_Chr3g0111691 53.846 78 35 1 548 625 14 90 2.34e-19 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585560 AT1G15910.1 56.543 619 255 5 18 624 17 633 0.0 671
Msa0585560 AT4G00380.1 54.854 618 266 4 19 624 18 634 0.0 652
Msa0585560 AT4G00380.3 54.854 618 266 4 19 624 18 634 0.0 652
Msa0585560 AT4G00380.2 51.707 615 262 5 19 624 18 606 0.0 604
Msa0585560 AT1G80790.1 54.032 620 268 9 19 625 19 634 0.0 597
Msa0585560 AT1G80790.2 54.032 620 268 9 19 625 19 634 0.0 597
Msa0585560 AT3G48670.2 41.429 630 344 11 16 625 21 645 4.42e-149 446
Msa0585560 AT3G48670.1 41.429 630 344 11 16 625 21 645 4.42e-149 446
Msa0585560 AT3G48670.3 41.429 630 344 11 16 625 21 645 4.42e-149 446
Msa0585560 AT1G80790.3 53.863 453 194 7 19 459 19 468 9.87e-148 436
Msa0585560 AT3G12550.5 36.220 635 370 11 16 621 5 633 1.49e-116 361
Msa0585560 AT3G12550.4 36.164 636 370 11 16 621 5 634 8.91e-116 359
Msa0585560 AT3G12550.2 36.164 636 370 11 16 621 5 634 8.91e-116 359
Msa0585560 AT3G12550.1 36.164 636 370 11 16 621 5 634 8.91e-116 359
Msa0585560 AT1G13790.2 38.704 540 302 7 93 615 197 724 6.22e-109 345
Msa0585560 AT1G13790.2 38.272 81 50 0 12 92 3 83 2.05e-12 70.9
Msa0585560 AT1G13790.1 38.704 540 302 7 93 615 197 724 6.22e-109 345
Msa0585560 AT1G13790.1 38.272 81 50 0 12 92 3 83 2.05e-12 70.9
Msa0585560 AT3G12550.3 33.874 555 333 10 16 542 5 553 1.08e-88 287
Msa0585560 AT5G59390.2 34.381 541 307 16 113 624 30 551 1.57e-79 262
Msa0585560 AT5G59390.4 34.381 541 307 16 113 624 30 551 1.57e-79 262
Msa0585560 AT5G59390.3 34.381 541 307 16 113 624 30 551 1.57e-79 262
Msa0585560 AT5G59390.1 34.066 546 307 17 113 624 30 556 3.06e-77 256
Msa0585560 AT5G59390.5 34.066 546 307 17 113 624 30 556 3.06e-77 256
Msa0585560 AT4G01180.1 33.959 533 299 15 113 614 28 538 5.36e-74 248
Msa0585560 AT4G01780.1 33.406 458 205 8 170 625 111 470 4.94e-65 221
Msa0585560 AT3G29375.3 44.776 201 105 2 424 624 32 226 2.98e-46 163
Msa0585560 AT3G29375.1 44.776 201 105 2 424 624 155 349 1.36e-44 163
Msa0585560 AT3G29375.2 41.406 128 68 3 424 551 32 152 1.39e-18 84.3
Msa0585560 AT2G16490.1 43.243 74 42 0 551 624 75 148 8.19e-15 73.6

Find 159 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTGTAACCACTTTAAA+AGG 0.096361 4_2:-6517387 None:intergenic
CAACTGAAGGATCTTGTTTA+AGG 0.147603 4_2:-6516647 None:intergenic
CTGTTGAGCTTTGCTCTTTA+TGG 0.185569 4_2:+6517334 Msa0585560:CDS
CTTGGTGCCAATATTAGTTT+TGG 0.243764 4_2:-6517232 None:intergenic
ATGGAAATTGAAGAACTAAA+AGG 0.270508 4_2:+6516703 Msa0585560:CDS
GGAAGACAAAATAGAAAGTT+TGG 0.287888 4_2:+6516807 Msa0585560:CDS
ATAAGCAAATCACATGATTC+TGG 0.315654 4_2:+6515010 Msa0585560:CDS
TACAAAGTGAAGAACAATAA+TGG 0.316359 4_2:+6514722 Msa0585560:CDS
TTGGAATTCCATGGACTTGC+AGG 0.324273 4_2:+6515198 Msa0585560:CDS
AATAGAAAGTTTGGAAGATA+TGG 0.336318 4_2:+6516816 Msa0585560:CDS
TTCTGATGAAGCTGGGATAA+AGG 0.336391 4_2:+6517311 Msa0585560:CDS
AAAGCAGGAATTCAAATATA+AGG 0.338005 4_2:+6514778 Msa0585560:CDS
TGTGGAACTTCAAAGAAAAT+AGG 0.338398 4_2:+6517657 Msa0585560:CDS
ACTGGTGCCAAAACTAATAT+TGG 0.346735 4_2:+6517225 Msa0585560:CDS
AGAAAAGTTGAGTAATGAAT+TGG 0.351658 4_2:+6515666 Msa0585560:CDS
GAAATAATTAGTCAGAATAT+AGG 0.353567 4_2:-6518733 None:intergenic
GATGAAATTGCAGAGGAAAA+TGG 0.359851 4_2:-6513920 None:intergenic
CCTGTAGTTCATCATTGCTT+TGG 0.360050 4_2:-6516873 None:intergenic
CAGGACAGTTCAGAGATTTA+CGG 0.365740 4_2:+6515217 Msa0585560:CDS
TGAGGAGGTACGAAGGATAT+TGG 0.370766 4_2:+6515636 Msa0585560:CDS
CGATCAAGAGAGGCAGAAAC+TGG 0.373050 4_2:+6515750 Msa0585560:CDS
ATGAAGTATGAAACTGTTAC+TGG 0.375794 4_2:+6518786 Msa0585560:three_prime_UTR
CCAGCCCTTAACTCTTCATA+TGG 0.378071 4_2:-6514695 None:intergenic
AGAAACCATATGAAGAGTTA+AGG 0.381900 4_2:+6514690 Msa0585560:CDS
TCTGCTCCTTTGAGGCCAAC+TGG 0.386894 4_2:-6516443 None:intergenic
CCAGTGGTGGGTATACTGTT+TGG 0.391573 4_2:+6517630 Msa0585560:CDS
CAGTGGTGGGTATACTGTTT+GGG 0.392443 4_2:+6517631 Msa0585560:CDS
ACAAAGTGAAGAACAATAAT+GGG 0.394132 4_2:+6514723 Msa0585560:CDS
ATATAGCTGTCCAACGAAAA+TGG 0.395372 4_2:-6518619 None:intergenic
GATCTGTTGCAGCATGCATC+TGG 0.396114 4_2:+6514800 Msa0585560:CDS
TCAGAAAAGGAACGTGAAAA+TGG 0.399265 4_2:-6513888 None:intergenic
AGCTATCTTCTGCTCCTTTG+AGG 0.404036 4_2:-6516451 None:intergenic
GGCTGTTCATACGTTCTTGA+TGG 0.404762 4_2:+6515069 Msa0585560:CDS
TTAGTACCTCACGCTTGTTT+AGG 0.407923 4_2:-6515726 None:intergenic
ATAATTGTCCAGGGTCGATT+GGG 0.410920 4_2:+6515263 Msa0585560:CDS
GTCAAGGTCTCCCATCCTCT+TGG 0.419346 4_2:-6517250 None:intergenic
CAGGCTTGTTGAAGAGCAAA+AGG 0.422308 4_2:+6516488 Msa0585560:CDS
GAAGTACATCATATCTCAAT+CGG 0.422729 4_2:+6518580 Msa0585560:three_prime_UTR
CTTGTTTAGGTCTCTGCTCC+AGG 0.422956 4_2:-6515713 None:intergenic
TATTAAAACTCACTCCTCCT+AGG 0.429950 4_2:+6513840 Msa0585560:five_prime_UTR
TGGAAATTGAAGAACTAAAA+GGG 0.432185 4_2:+6516704 Msa0585560:CDS
CAGTTCAGAGATTTACGGTT+GGG 0.434103 4_2:+6515222 Msa0585560:CDS
TATAATTGTCCAGGGTCGAT+TGG 0.446459 4_2:+6515262 Msa0585560:CDS
ACTTCAACAATGACTGGAAT+GGG 0.453119 4_2:+6515116 Msa0585560:CDS
CTGCAAGTCATGAAACATCT+TGG 0.454930 4_2:+6516730 Msa0585560:CDS
GAAACCATATGAAGAGTTAA+GGG 0.456039 4_2:+6514691 Msa0585560:CDS
CAGTTTCTGCCTCTCTTGAT+CGG 0.457451 4_2:-6515749 None:intergenic
GAAGATGATTATAATTGTCC+AGG 0.464276 4_2:+6515253 Msa0585560:CDS
TCAAAGCCGGGCGAGGTACT+TGG 0.465289 4_2:-6514919 None:intergenic
TAGCTGATGAGAATGTCTTC+AGG 0.469727 4_2:+6516469 Msa0585560:CDS
CAACTGGAGTGATTGATTCC+TGG 0.474236 4_2:-6516427 None:intergenic
GGTATACTGTTTGGGAGCTG+TGG 0.476632 4_2:+6517639 Msa0585560:CDS
TACAAAAGCTGAAGAAGGAA+TGG 0.478989 4_2:+6517549 Msa0585560:CDS
TAATATCAATCTCATTTGCC+AGG 0.479312 4_2:-6515372 None:intergenic
GGAAGAGATGAATTCAGAGT+TGG 0.479922 4_2:+6516786 Msa0585560:CDS
ATCACTCCAGTTGGCCTCAA+AGG 0.480055 4_2:+6516437 Msa0585560:CDS
AAAACAGAAGGCAAACCATC+TGG 0.480375 4_2:+6514853 Msa0585560:CDS
TCCAAGTTGAGAACTACGTT+TGG 0.494414 4_2:+6514963 Msa0585560:CDS
TTATAGACTTCAACAATGAC+TGG 0.495035 4_2:+6515110 Msa0585560:CDS
ACAAAAGCTGAAGAAGGAAT+GGG 0.498002 4_2:+6517550 Msa0585560:CDS
ATCTCAACAAGATGCAGTAT+AGG 0.500867 4_2:+6515404 Msa0585560:CDS
ATGGAAGCTCAGCTCAGAAA+AGG 0.500964 4_2:-6513901 None:intergenic
ATTAAAACTCACTCCTCCTA+GGG 0.504234 4_2:+6513841 Msa0585560:five_prime_UTR
TCTCTGTAACCACTTTAAAA+GGG 0.509171 4_2:-6517386 None:intergenic
ACTTAGGTGTCCGTATTGCT+CGG 0.510947 4_2:+6514748 Msa0585560:CDS
AACTACGTTTGGCCGTGGAC+AGG 0.513586 4_2:+6514974 Msa0585560:CDS
GAATTTAACGCTTATTGTCA+AGG 0.513944 4_2:+6516846 Msa0585560:CDS
TGAGCTTTGCTCTTTATGGC+AGG 0.521055 4_2:+6517338 Msa0585560:CDS
CTAATTTAAGTCTGAACTGA+AGG 0.521326 4_2:-6518683 None:intergenic
TTCAGTAGAAAGATAGAAGT+AGG 0.523707 4_2:+6518648 Msa0585560:three_prime_UTR
TAATATTGGCACCAAGAGGA+TGG 0.524177 4_2:+6517239 Msa0585560:CDS
TATGTCCTTGAGTAGGATGC+TGG 0.524242 4_2:+6515441 Msa0585560:CDS
CCAAACAGTATACCCACCAC+TGG 0.525403 4_2:-6517630 None:intergenic
CCAAAGCAATGATGAACTAC+AGG 0.526461 4_2:+6516873 Msa0585560:CDS
CTTAAACAAGATCCTTCAGT+TGG 0.526740 4_2:+6516648 Msa0585560:CDS
ACGTAGTTCTCAACTTGGAC+AGG 0.526836 4_2:-6514959 None:intergenic
GCCAAACGTAGTTCTCAACT+TGG 0.528155 4_2:-6514964 None:intergenic
TGAACTGTCCTGCAAGTCCA+TGG 0.528763 4_2:-6515206 None:intergenic
AAGAGAGGAGGATAGGCAAA+AGG 0.532512 4_2:+6517740 Msa0585560:exon
AAATAGCATTGTGGAAAACC+TGG 0.534545 4_2:+6515354 Msa0585560:CDS
GACTTCAACAATGACTGGAA+TGG 0.535886 4_2:+6515115 Msa0585560:CDS
TCAGCCTTCCTTTGTTGCGA+AGG 0.537542 4_2:-6515291 None:intergenic
CTTAGGTGTCCGTATTGCTC+GGG 0.537566 4_2:+6514749 Msa0585560:CDS
ATCTGGAGTAGGCAAAGGTT+CGG 0.537904 4_2:+6514817 Msa0585560:CDS
ATCATATCTCAATCGGGAGG+TGG 0.539320 4_2:+6518587 Msa0585560:three_prime_UTR
GATGGGAGACCTTGACCAGA+AGG 0.539667 4_2:+6517257 Msa0585560:CDS
GTTCATACGTTCTTGATGGA+TGG 0.543612 4_2:+6515073 Msa0585560:CDS
TTCATTATAAACAAGTCAAG+TGG 0.544874 4_2:-6518768 None:intergenic
AAATGAGGAAGCTTGATACC+TGG 0.545605 4_2:+6515695 Msa0585560:CDS
TCCAAACTACCAGAGAGAAA+AGG 0.547284 4_2:+6516618 Msa0585560:intron
TTGAGAACTACGTTTGGCCG+TGG 0.547439 4_2:+6514969 Msa0585560:CDS
GAAACTACAAAAGCTGAAGA+AGG 0.547462 4_2:+6517544 Msa0585560:CDS
CCATATGAAGAGTTAAGGGC+TGG 0.547915 4_2:+6514695 Msa0585560:CDS
AAACAGAAGCACAAAACAGA+AGG 0.549041 4_2:+6514841 Msa0585560:CDS
TGTCCTTCCAGAAAGACTCC+AGG 0.550329 4_2:+6516409 Msa0585560:intron
ATGCAAGTGAGCTTGAGAAA+TGG 0.551886 4_2:+6515146 Msa0585560:CDS
ACGACAGCTAAGGTCAAAGC+CGG 0.553034 4_2:-6514932 None:intergenic
ATTTGCTAAGTACAAACCAT+TGG 0.554128 4_2:+6515048 Msa0585560:CDS
AGCAGACCAAGTACCTCGCC+CGG 0.554305 4_2:+6514913 Msa0585560:CDS
ACTGGAAGAGGACAAGAAGA+AGG 0.555312 4_2:+6515768 Msa0585560:CDS
TGATTCTGGATACTTGCAAA+AGG 0.555382 4_2:+6515024 Msa0585560:CDS
AGTTCTCAACTTGGACAGGT+TGG 0.556864 4_2:-6514955 None:intergenic
GAAACTGTTACTGGTTATCA+CGG 0.561539 4_2:+6518795 Msa0585560:three_prime_UTR
GCTAAGGTCAAAGCCGGGCG+AGG 0.561717 4_2:-6514926 None:intergenic
AGAAGTGATCACTTATATTG+TGG 0.563683 4_2:+6517694 Msa0585560:CDS
TTGCAGCATGCATCTGGAGT+AGG 0.566883 4_2:+6514806 Msa0585560:CDS
TAAGCGCAAGAGAGGAGGAT+AGG 0.567186 4_2:+6517733 Msa0585560:CDS
CAGGAATCAATCACTCCAGT+TGG 0.571555 4_2:+6516428 Msa0585560:CDS
ATGATGAACTACAGGAAGCT+CGG 0.574508 4_2:+6516881 Msa0585560:CDS
AGAACAATAATGGGACACTT+AGG 0.574673 4_2:+6514732 Msa0585560:CDS
AAGTACATCATATCTCAATC+GGG 0.577063 4_2:+6518581 Msa0585560:three_prime_UTR
AATTGAATGCACGAAACCCT+AGG 0.578610 4_2:-6513857 None:intergenic
AGGTACTCCCCAATCGACCC+TGG 0.579229 4_2:-6515271 None:intergenic
AAAACTTTGCAAGAGCCAGA+TGG 0.582131 4_2:-6514868 None:intergenic
AACGAGTACAACCCCAGTGG+TGG 0.585705 4_2:+6517617 Msa0585560:CDS
AATATTGGCACCAAGAGGAT+GGG 0.586149 4_2:+6517240 Msa0585560:CDS
GACAGGTTGGACGACAGCTA+AGG 0.586592 4_2:-6514942 None:intergenic
AGTACCTTCGCAACAAAGGA+AGG 0.587192 4_2:+6515287 Msa0585560:CDS
AGAGAGGCAGAAACTGGAAG+AGG 0.587763 4_2:+6515756 Msa0585560:CDS
AAAATGTGAAGAACTCAGCT+TGG 0.590276 4_2:+6517361 Msa0585560:CDS
CAAACAGTATACCCACCACT+GGG 0.590617 4_2:-6517629 None:intergenic
GGGGAGTACCTTCGCAACAA+AGG 0.594476 4_2:+6515283 Msa0585560:CDS
CTCCTCCAGCATCCTACTCA+AGG 0.596087 4_2:-6515446 None:intergenic
CAACTTAAGCGCAAGAGAGG+AGG 0.597370 4_2:+6517728 Msa0585560:CDS
GATCAGTGAGTCTGAGATCG+AGG 0.600157 4_2:+6514658 Msa0585560:CDS
AAGCAACTTAAGCGCAAGAG+AGG 0.605662 4_2:+6517725 Msa0585560:CDS
CGACAGCTAAGGTCAAAGCC+GGG 0.609400 4_2:-6514931 None:intergenic
CATGCATCTGGAGTAGGCAA+AGG 0.611854 4_2:+6514812 Msa0585560:CDS
AGAAGACTATGTCCTTGAGT+AGG 0.612892 4_2:+6515434 Msa0585560:CDS
ACAGTTCAGAGATTTACGGT+TGG 0.615927 4_2:+6515221 Msa0585560:CDS
GTTATCACGGTTATCGCATA+CGG 0.618789 4_2:+6518808 Msa0585560:three_prime_UTR
GAACTTCAAAGAAAATAGGA+AGG 0.621964 4_2:+6517661 Msa0585560:CDS
AGGTACTAACCGATCAAGAG+AGG 0.623269 4_2:+6515740 Msa0585560:CDS
AAGATGATTATAATTGTCCA+GGG 0.627300 4_2:+6515254 Msa0585560:CDS
CATGCAGCGTAAAGCTCGTG+AGG 0.627326 4_2:+6515618 Msa0585560:CDS
TTGACAAGTATGCCTGTCCA+CGG 0.630837 4_2:-6514986 None:intergenic
AAACTACCAGAGAGAAAAGG+AGG 0.630982 4_2:+6516621 Msa0585560:intron
TAATTGTCCAGGGTCGATTG+GGG 0.634670 4_2:+6515264 Msa0585560:CDS
TGGTTTGAGACTAAACGTTG+TGG 0.637320 4_2:+6515166 Msa0585560:CDS
GTCCTTGAGTAGGATGCTGG+AGG 0.639598 4_2:+6515444 Msa0585560:CDS
GGGTTAAATGAAATGCTGAC+TGG 0.640070 4_2:+6517207 Msa0585560:CDS
TTCGCAACAAAGGAAGGCTG+AGG 0.640972 4_2:+6515293 Msa0585560:CDS
AAGCTCGTGAGGAGGTACGA+AGG 0.645630 4_2:+6515629 Msa0585560:CDS
AAGAACGTATGAACAGCCAA+TGG 0.648751 4_2:-6515064 None:intergenic
CTACCAGAGAGAAAAGGAGG+AGG 0.652051 4_2:+6516624 Msa0585560:intron
TCTTGGAGATCAAGATGATG+CGG 0.666276 4_2:+6516747 Msa0585560:CDS
ACGAGTACAACCCCAGTGGT+GGG 0.666856 4_2:+6517618 Msa0585560:CDS
CAAAAGCTGAAGAAGGAATG+GGG 0.672943 4_2:+6517551 Msa0585560:CDS
TCAAAGCAGAAATAGCATTG+TGG 0.673917 4_2:+6515345 Msa0585560:CDS
AAACTAATATTGGCACCAAG+AGG 0.676823 4_2:+6517235 Msa0585560:CDS
TACATCATATCTCAATCGGG+AGG 0.678077 4_2:+6518584 Msa0585560:three_prime_UTR
GCAGCGTAAAGCTCGTGAGG+AGG 0.682044 4_2:+6515621 Msa0585560:CDS
TTACAGCGATGAAATTGCAG+AGG 0.696307 4_2:-6513927 None:intergenic
CAGAGACCTAAACAAGCGTG+AGG 0.704526 4_2:+6515720 Msa0585560:CDS
CTTGATGGATGGTAACTGCG+TGG 0.712841 4_2:+6515084 Msa0585560:CDS
TGAATGCACGAAACCCTAGG+AGG 0.720425 4_2:-6513854 None:intergenic
TACAGAGAATGATAACCATG+TGG 0.726744 4_2:+6517401 Msa0585560:CDS
AAACAGTATACCCACCACTG+GGG 0.786062 4_2:-6517628 None:intergenic
GTTAACGAGTACAACCCCAG+TGG 0.812173 4_2:+6517614 Msa0585560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCAATGTAATATATA+TGG + chr4_2:6516139-6516158 Msa0585560:intron 10.0%
!!! GTGATATTAAATTTCATTTT+AGG + chr4_2:6514347-6514366 Msa0585560:intron 15.0%
!!! CAGTTAAAAATATTTGAAAT+GGG - chr4_2:6515828-6515847 None:intergenic 15.0%
!!! AGTAACATTTCTTTTTATAT+AGG - chr4_2:6516959-6516978 None:intergenic 15.0%
!!! TTTCAAATTTCTATTGTTTT+AGG + chr4_2:6517185-6517204 Msa0585560:intron 15.0%
!!! TTCAAATTTCTATTGTTTTA+GGG + chr4_2:6517186-6517205 Msa0585560:intron 15.0%
!! AAATAGTGTAATAATTAACA+TGG + chr4_2:6517476-6517495 Msa0585560:intron 15.0%
!!! GTTTATTTATTTTATTCCAA+TGG + chr4_2:6518836-6518855 Msa0585560:three_prime_UTR 15.0%
!! GAAGAATTCAAAGAAAAAAA+GGG - chr4_2:6513975-6513994 None:intergenic 20.0%
!! AGAAGAATTCAAAGAAAAAA+AGG - chr4_2:6513976-6513995 None:intergenic 20.0%
!! AACAAAAACAAATACTGTAT+TGG - chr4_2:6514071-6514090 None:intergenic 20.0%
!!! TAAGTTACATTTTAAAATGC+AGG + chr4_2:6514292-6514311 Msa0585560:intron 20.0%
!!! TTAAATTTCATTTTAGGTCA+TGG + chr4_2:6514353-6514372 Msa0585560:intron 20.0%
!!! AAAAAAATGAGACATTTTTG+TGG - chr4_2:6515583-6515602 None:intergenic 20.0%
!! GCAGTTAAAAATATTTGAAA+TGG - chr4_2:6515829-6515848 None:intergenic 20.0%
!!! CACTTTTTTATTCAAATCAA+GGG - chr4_2:6516005-6516024 None:intergenic 20.0%
!!! AGCACATATGTTTTTTTATA+TGG - chr4_2:6516287-6516306 None:intergenic 20.0%
!! AAATTTGAAAAAAATGAGAG+GGG - chr4_2:6517175-6517194 None:intergenic 20.0%
!! GAAATTTGAAAAAAATGAGA+GGG - chr4_2:6517176-6517195 None:intergenic 20.0%
!! AGAAATTTGAAAAAAATGAG+AGG - chr4_2:6517177-6517196 None:intergenic 20.0%
!!! TCAAATTTCTATTGTTTTAG+GGG + chr4_2:6517187-6517206 Msa0585560:intron 20.0%
!! AAATGTAACAACATTCTATT+TGG + chr4_2:6517969-6517988 Msa0585560:intron 20.0%
!! AAAGTTTATAAATGAAAAGC+TGG + chr4_2:6518043-6518062 Msa0585560:intron 20.0%
!!! TAATTTTGAAAAGCAAAAGA+TGG + chr4_2:6518374-6518393 Msa0585560:intron 20.0%
!!! AAACTTGTTTAGAATTTAAC+AGG - chr4_2:6518539-6518558 None:intergenic 20.0%
!! GAAATAATTAGTCAGAATAT+AGG - chr4_2:6518736-6518755 None:intergenic 20.0%
! AGTTGCTTATAAGCTAATTT+AGG + chr4_2:6514113-6514132 Msa0585560:intron 25.0%
!!! TACATTTTAAAATGCAGGAA+TGG + chr4_2:6514297-6514316 Msa0585560:intron 25.0%
!! AAAAAAAGCATAGCTAAGAA+TGG - chr4_2:6514437-6514456 None:intergenic 25.0%
! TACAAAGTGAAGAACAATAA+TGG + chr4_2:6514722-6514741 Msa0585560:CDS 25.0%
! ACAAAGTGAAGAACAATAAT+GGG + chr4_2:6514723-6514742 Msa0585560:CDS 25.0%
! AAAGCAGGAATTCAAATATA+AGG + chr4_2:6514778-6514797 Msa0585560:CDS 25.0%
! AAGATGATTATAATTGTCCA+GGG + chr4_2:6515254-6515273 Msa0585560:CDS 25.0%
!! TTTGCCTTATTGTATAGAAT+AGG + chr4_2:6515528-6515547 Msa0585560:intron 25.0%
!! TTGCCTTATTGTATAGAATA+GGG + chr4_2:6515529-6515548 Msa0585560:intron 25.0%
! AGAAAAGTTGAGTAATGAAT+TGG + chr4_2:6515666-6515685 Msa0585560:CDS 25.0%
! ATGAATTGGATGAAAAAATG+AGG + chr4_2:6515680-6515699 Msa0585560:CDS 25.0%
!!! GCACTTTTTTATTCAAATCA+AGG - chr4_2:6516006-6516025 None:intergenic 25.0%
! AAATGAATCCCAACTTTAAT+TGG + chr4_2:6516053-6516072 Msa0585560:intron 25.0%
!!! AAAAGCTTTTGATTATTGTG+AGG + chr4_2:6516116-6516135 Msa0585560:intron 25.0%
! ATTTCAACTCTACATAAATG+AGG - chr4_2:6516179-6516198 None:intergenic 25.0%
!! TTCCATTTCCAATTTTTGTT+TGG - chr4_2:6516689-6516708 None:intergenic 25.0%
! ATGGAAATTGAAGAACTAAA+AGG + chr4_2:6516703-6516722 Msa0585560:CDS 25.0%
! TGGAAATTGAAGAACTAAAA+GGG + chr4_2:6516704-6516723 Msa0585560:CDS 25.0%
! AATAGAAAGTTTGGAAGATA+TGG + chr4_2:6516816-6516835 Msa0585560:CDS 25.0%
!! AAATCTTATTTCCTAAAGAG+AGG - chr4_2:6517101-6517120 None:intergenic 25.0%
!! ATTACACTATTTCTCTATTG+AGG - chr4_2:6517468-6517487 None:intergenic 25.0%
! ACATGGTAATATTGTTGTAT+TGG + chr4_2:6517493-6517512 Msa0585560:intron 25.0%
!! CACTGACTAAAATAGTAATT+TGG + chr4_2:6517825-6517844 Msa0585560:intron 25.0%
!! AACAACTTTTAGACTTTTGT+CGG + chr4_2:6517888-6517907 Msa0585560:intron 25.0%
! TAAGTTAACTAATAGCTACT+AGG + chr4_2:6518011-6518030 Msa0585560:intron 25.0%
! AAGTGGTTGTTAGAATTAAT+TGG + chr4_2:6518079-6518098 Msa0585560:intron 25.0%
! ACATGAAAGATATGTTCATA+TGG + chr4_2:6518127-6518146 Msa0585560:intron 25.0%
! TTACTAAAAGCTTTACCAAA+AGG + chr4_2:6518182-6518201 Msa0585560:intron 25.0%
!! TAAACTTTTGTCATTCCTTT+TGG - chr4_2:6518200-6518219 None:intergenic 25.0%
! AACAAAAGAGAGAAAAAAAC+TGG - chr4_2:6518432-6518451 None:intergenic 25.0%
!!! CTTTTGTTTCTTACTCATAA+TGG + chr4_2:6518444-6518463 Msa0585560:intron 25.0%
! ATGGAAAAGTTTCTGATATT+TGG + chr4_2:6518463-6518482 Msa0585560:intron 25.0%
! TTCTAAACAAGTTTATCTTG+AGG + chr4_2:6518545-6518564 Msa0585560:intron 25.0%
!!! CTTTTTTATCTTTTGTCGAT+TGG + chr4_2:6518706-6518725 Msa0585560:three_prime_UTR 25.0%
! TTCATTATAAACAAGTCAAG+TGG - chr4_2:6518771-6518790 None:intergenic 25.0%
!!! TTGTTGCTGAGTTTTTTCTT+CGG + chr4_2:6514014-6514033 Msa0585560:intron 30.0%
! GTCATGGTTTATGTGATTTT+GGG + chr4_2:6514369-6514388 Msa0585560:intron 30.0%
! TCATGGTTTATGTGATTTTG+GGG + chr4_2:6514370-6514389 Msa0585560:intron 30.0%
!!! TAGCTATGCTTTTTTTGTGA+TGG + chr4_2:6514441-6514460 Msa0585560:intron 30.0%
!!! AGCTATGCTTTTTTTGTGAT+GGG + chr4_2:6514442-6514461 Msa0585560:intron 30.0%
!!! TTTTTTTGTGATGGGACTAA+GGG + chr4_2:6514450-6514469 Msa0585560:intron 30.0%
! ATTGTATGCCCTTTTTCTTT+TGG + chr4_2:6514548-6514567 Msa0585560:intron 30.0%
! TTGTATGCCCTTTTTCTTTT+GGG + chr4_2:6514549-6514568 Msa0585560:intron 30.0%
AGAAACCATATGAAGAGTTA+AGG + chr4_2:6514690-6514709 Msa0585560:CDS 30.0%
GAAACCATATGAAGAGTTAA+GGG + chr4_2:6514691-6514710 Msa0585560:CDS 30.0%
ATAAGCAAATCACATGATTC+TGG + chr4_2:6515010-6515029 Msa0585560:CDS 30.0%
! ATTTGCTAAGTACAAACCAT+TGG + chr4_2:6515048-6515067 Msa0585560:CDS 30.0%
TTATAGACTTCAACAATGAC+TGG + chr4_2:6515110-6515129 Msa0585560:CDS 30.0%
AAAAAAGGATTGGAATTCCA+TGG + chr4_2:6515189-6515208 Msa0585560:CDS 30.0%
GAAGATGATTATAATTGTCC+AGG + chr4_2:6515253-6515272 Msa0585560:CDS 30.0%
TAATATCAATCTCATTTGCC+AGG - chr4_2:6515375-6515394 None:intergenic 30.0%
! TGCCTTATTGTATAGAATAG+GGG + chr4_2:6515530-6515549 Msa0585560:intron 30.0%
!!! TCATTTTTTTCTCAGAGTCA+AGG + chr4_2:6515593-6515612 Msa0585560:intron 30.0%
!!! CAAATTTTTTGCAAGGACAA+TGG - chr4_2:6515879-6515898 None:intergenic 30.0%
!!! GACAGATCAAATTTTTTGCA+AGG - chr4_2:6515886-6515905 None:intergenic 30.0%
ATTTGATCTGTCTTTCTTTG+TGG + chr4_2:6515894-6515913 Msa0585560:intron 30.0%
GATTTGAATAACAATGTCCT+TGG + chr4_2:6515976-6515995 Msa0585560:intron 30.0%
TTCATTTAAAGAGAGTCAGT+AGG - chr4_2:6516040-6516059 None:intergenic 30.0%
! GCATTTTATATATTAGTGCG+TGG + chr4_2:6516228-6516247 Msa0585560:intron 30.0%
ACTGATGATTCAAAGTCTTA+AGG - chr4_2:6516350-6516369 None:intergenic 30.0%
! TTTTCATAACCAAGTGAGTA+GGG - chr4_2:6516518-6516537 None:intergenic 30.0%
TTAAAGACATTCACAATGGA+TGG - chr4_2:6516586-6516605 None:intergenic 30.0%
TCAGTTAAAGACATTCACAA+TGG - chr4_2:6516590-6516609 None:intergenic 30.0%
ACTAGATGCCAAACAAAAAT+TGG + chr4_2:6516678-6516697 Msa0585560:CDS 30.0%
TGCCAAACAAAAATTGGAAA+TGG + chr4_2:6516684-6516703 Msa0585560:CDS 30.0%
TGCGGCTATTAAGAAAAAAA+TGG + chr4_2:6516765-6516784 Msa0585560:CDS 30.0%
GGAAGACAAAATAGAAAGTT+TGG + chr4_2:6516807-6516826 Msa0585560:CDS 30.0%
GAATTTAACGCTTATTGTCA+AGG + chr4_2:6516846-6516865 Msa0585560:CDS 30.0%
TGAAGAATACACGAAGATAA+AGG - chr4_2:6517004-6517023 None:intergenic 30.0%
TTCAAGATAACCAACTAACA+AGG + chr4_2:6517020-6517039 Msa0585560:intron 30.0%
! AGAAGAAAATCTTTTCTTGC+AGG - chr4_2:6517295-6517314 None:intergenic 30.0%
! TCTCTGTAACCACTTTAAAA+GGG - chr4_2:6517389-6517408 None:intergenic 30.0%
TTCTCTGTAACCACTTTAAA+AGG - chr4_2:6517390-6517409 None:intergenic 30.0%
! GTACTCGTTAACTTCTTTTA+AGG - chr4_2:6517606-6517625 None:intergenic 30.0%
TGTGGAACTTCAAAGAAAAT+AGG + chr4_2:6517657-6517676 Msa0585560:CDS 30.0%
GAACTTCAAAGAAAATAGGA+AGG + chr4_2:6517661-6517680 Msa0585560:CDS 30.0%
AGAAGTGATCACTTATATTG+TGG + chr4_2:6517694-6517713 Msa0585560:CDS 30.0%
!! ATATCAATGCAGTTCTAAAC+AGG - chr4_2:6517791-6517810 None:intergenic 30.0%
! ACAACTTTTAGACTTTTGTC+GGG + chr4_2:6517889-6517908 Msa0585560:intron 30.0%
CAAATATGCTAACAAGTCTT+TGG + chr4_2:6518229-6518248 Msa0585560:intron 30.0%
TTATTAAATCGCTGCATTGA+CGG + chr4_2:6518299-6518318 Msa0585560:intron 30.0%
GAAGTACATCATATCTCAAT+CGG + chr4_2:6518580-6518599 Msa0585560:three_prime_UTR 30.0%
AAGTACATCATATCTCAATC+GGG + chr4_2:6518581-6518600 Msa0585560:three_prime_UTR 30.0%
TTCAGTAGAAAGATAGAAGT+AGG + chr4_2:6518648-6518667 Msa0585560:three_prime_UTR 30.0%
! ATAGAAGTAGGACATTTTCA+TGG + chr4_2:6518660-6518679 Msa0585560:three_prime_UTR 30.0%
CTAATTTAAGTCTGAACTGA+AGG - chr4_2:6518686-6518705 None:intergenic 30.0%
ATGAAGTATGAAACTGTTAC+TGG + chr4_2:6518786-6518805 Msa0585560:three_prime_UTR 30.0%
ATGTAAAAAAAGGCAACCAT+TGG - chr4_2:6518855-6518874 None:intergenic 30.0%
TATTAAAACTCACTCCTCCT+AGG + chr4_2:6513840-6513859 Msa0585560:five_prime_UTR 35.0%
ATTAAAACTCACTCCTCCTA+GGG + chr4_2:6513841-6513860 Msa0585560:five_prime_UTR 35.0%
TCAGAAAAGGAACGTGAAAA+TGG - chr4_2:6513891-6513910 None:intergenic 35.0%
GATGAAATTGCAGAGGAAAA+TGG - chr4_2:6513923-6513942 None:intergenic 35.0%
! GGTCATGGTTTATGTGATTT+TGG + chr4_2:6514368-6514387 Msa0585560:intron 35.0%
!!! CTTTTTTTGTGATGGGACTA+AGG + chr4_2:6514449-6514468 Msa0585560:intron 35.0%
AAATGCAGTCTGCTACTAAA+TGG - chr4_2:6514503-6514522 None:intergenic 35.0%
! AGAACAATAATGGGACACTT+AGG + chr4_2:6514732-6514751 Msa0585560:CDS 35.0%
! TTTTTCTTTCCCGAGCAATA+CGG - chr4_2:6514761-6514780 None:intergenic 35.0%
! AAACAGAAGCACAAAACAGA+AGG + chr4_2:6514841-6514860 Msa0585560:CDS 35.0%
TGATTCTGGATACTTGCAAA+AGG + chr4_2:6515024-6515043 Msa0585560:CDS 35.0%
ACTTCAACAATGACTGGAAT+GGG + chr4_2:6515116-6515135 Msa0585560:CDS 35.0%
GACTAAACGTTGTGGAAAAA+AGG + chr4_2:6515174-6515193 Msa0585560:CDS 35.0%
AACGTTGTGGAAAAAAGGAT+TGG + chr4_2:6515179-6515198 Msa0585560:CDS 35.0%
TCAAAGCAGAAATAGCATTG+TGG + chr4_2:6515345-6515364 Msa0585560:CDS 35.0%
AAATAGCATTGTGGAAAACC+TGG + chr4_2:6515354-6515373 Msa0585560:CDS 35.0%
ATCTCAACAAGATGCAGTAT+AGG + chr4_2:6515404-6515423 Msa0585560:CDS 35.0%
! CTTCACAATGCTTTTGTTGA+AGG + chr4_2:6515478-6515497 Msa0585560:CDS 35.0%
! GCCTTATTGTATAGAATAGG+GGG + chr4_2:6515531-6515550 Msa0585560:intron 35.0%
TCCCCCTATTCTATACAATA+AGG - chr4_2:6515535-6515554 None:intergenic 35.0%
GATCAACCAAGAACATTAGT+AGG - chr4_2:6515923-6515942 None:intergenic 35.0%
GATTTGACTAACAATGTCCT+TGG + chr4_2:6515945-6515964 Msa0585560:intron 35.0%
ATTCAAATCAAGAGCAACCA+AGG - chr4_2:6515965-6515984 None:intergenic 35.0%
! GCTTTTAGCATATAGACTCT+GGG - chr4_2:6516102-6516121 None:intergenic 35.0%
! AGCTTTTAGCATATAGACTC+TGG - chr4_2:6516103-6516122 None:intergenic 35.0%
GCATGTAAAGGTTAGAAAGT+GGG - chr4_2:6516319-6516338 None:intergenic 35.0%
AGCATGTAAAGGTTAGAAAG+TGG - chr4_2:6516320-6516339 None:intergenic 35.0%
TTCTAACCTTTACATGCTTG+AGG + chr4_2:6516322-6516341 Msa0585560:intron 35.0%
! CTTTTCATAACCAAGTGAGT+AGG - chr4_2:6516519-6516538 None:intergenic 35.0%
GTGAATGTCTTTAACTGATG+TGG + chr4_2:6516592-6516611 Msa0585560:intron 35.0%
! CAACTGAAGGATCTTGTTTA+AGG - chr4_2:6516650-6516669 None:intergenic 35.0%
CTTAAACAAGATCCTTCAGT+TGG + chr4_2:6516648-6516667 Msa0585560:CDS 35.0%
ACACGAAGATAAAGGTTAGA+AGG - chr4_2:6516996-6517015 None:intergenic 35.0%
AATCTATGCACCTTGTTAGT+TGG - chr4_2:6517033-6517052 None:intergenic 35.0%
! TCTTATTTCCTAAAGAGAGG+TGG - chr4_2:6517098-6517117 None:intergenic 35.0%
GTTCTGCTGTGAATATATTG+TGG + chr4_2:6517134-6517153 Msa0585560:intron 35.0%
! ACTGGTGCCAAAACTAATAT+TGG + chr4_2:6517225-6517244 Msa0585560:CDS 35.0%
!!! CTTGGTGCCAATATTAGTTT+TGG - chr4_2:6517235-6517254 None:intergenic 35.0%
AAACTAATATTGGCACCAAG+AGG + chr4_2:6517235-6517254 Msa0585560:CDS 35.0%
! AGATTTTCTTCTGATGAAGC+TGG + chr4_2:6517303-6517322 Msa0585560:CDS 35.0%
! GATTTTCTTCTGATGAAGCT+GGG + chr4_2:6517304-6517323 Msa0585560:CDS 35.0%
AAAATGTGAAGAACTCAGCT+TGG + chr4_2:6517361-6517380 Msa0585560:CDS 35.0%
TACAGAGAATGATAACCATG+TGG + chr4_2:6517401-6517420 Msa0585560:CDS 35.0%
! AAAAACAGAGCATGGCTTTA+TGG - chr4_2:6517433-6517452 None:intergenic 35.0%
GAAACTACAAAAGCTGAAGA+AGG + chr4_2:6517544-6517563 Msa0585560:CDS 35.0%
TACAAAAGCTGAAGAAGGAA+TGG + chr4_2:6517549-6517568 Msa0585560:CDS 35.0%
ACAAAAGCTGAAGAAGGAAT+GGG + chr4_2:6517550-6517569 Msa0585560:CDS 35.0%
TTAGTCAGTGAAGCTATCAA+TGG - chr4_2:6517815-6517834 None:intergenic 35.0%
ATGCAGCGATTTAATAACAC+AGG - chr4_2:6518296-6518315 None:intergenic 35.0%
! TATTAAATCGCTGCATTGAC+GGG + chr4_2:6518300-6518319 Msa0585560:intron 35.0%
CAAAATTATCCATGACAGAC+AGG - chr4_2:6518362-6518381 None:intergenic 35.0%
! GAAACTATGACCATTTTCGT+TGG + chr4_2:6518609-6518628 Msa0585560:three_prime_UTR 35.0%
ATATAGCTGTCCAACGAAAA+TGG - chr4_2:6518622-6518641 None:intergenic 35.0%
! GAAACTGTTACTGGTTATCA+CGG + chr4_2:6518795-6518814 Msa0585560:three_prime_UTR 35.0%
CCTGGCATACATGTAAAAAA+AGG - chr4_2:6518865-6518884 None:intergenic 35.0%
!!! CCTTTTTTTACATGTATGCC+AGG + chr4_2:6518862-6518881 Msa0585560:three_prime_UTR 35.0%
AATTGAATGCACGAAACCCT+AGG - chr4_2:6513860-6513879 None:intergenic 40.0%
TTACAGCGATGAAATTGCAG+AGG - chr4_2:6513930-6513949 None:intergenic 40.0%
GCACTCTCCCAAAAGAAAAA+GGG - chr4_2:6514559-6514578 None:intergenic 40.0%
TGCACTCTCCCAAAAGAAAA+AGG - chr4_2:6514560-6514579 None:intergenic 40.0%
! CATTTTTCGCACAGCTTCAA+TGG + chr4_2:6514610-6514629 Msa0585560:intron 40.0%
AAAACAGAAGGCAAACCATC+TGG + chr4_2:6514853-6514872 Msa0585560:CDS 40.0%
AAAACTTTGCAAGAGCCAGA+TGG - chr4_2:6514871-6514890 None:intergenic 40.0%
! TGGCTCTTGCAAAGTTTTTG+AGG + chr4_2:6514873-6514892 Msa0585560:CDS 40.0%
! TCCAAGTTGAGAACTACGTT+TGG + chr4_2:6514963-6514982 Msa0585560:CDS 40.0%
AAGAACGTATGAACAGCCAA+TGG - chr4_2:6515067-6515086 None:intergenic 40.0%
GTTCATACGTTCTTGATGGA+TGG + chr4_2:6515073-6515092 Msa0585560:CDS 40.0%
GACTTCAACAATGACTGGAA+TGG + chr4_2:6515115-6515134 Msa0585560:CDS 40.0%
ATGCAAGTGAGCTTGAGAAA+TGG + chr4_2:6515146-6515165 Msa0585560:CDS 40.0%
! TGGTTTGAGACTAAACGTTG+TGG + chr4_2:6515166-6515185 Msa0585560:CDS 40.0%
CAGGACAGTTCAGAGATTTA+CGG + chr4_2:6515217-6515236 Msa0585560:CDS 40.0%
ACAGTTCAGAGATTTACGGT+TGG + chr4_2:6515221-6515240 Msa0585560:CDS 40.0%
CAGTTCAGAGATTTACGGTT+GGG + chr4_2:6515222-6515241 Msa0585560:CDS 40.0%
TATAATTGTCCAGGGTCGAT+TGG + chr4_2:6515262-6515281 Msa0585560:CDS 40.0%
ATAATTGTCCAGGGTCGATT+GGG + chr4_2:6515263-6515282 Msa0585560:CDS 40.0%
AGAAGACTATGTCCTTGAGT+AGG + chr4_2:6515434-6515453 Msa0585560:CDS 40.0%
AAATGAGGAAGCTTGATACC+TGG + chr4_2:6515695-6515714 Msa0585560:CDS 40.0%
TTAGTACCTCACGCTTGTTT+AGG - chr4_2:6515729-6515748 None:intergenic 40.0%
TGGTCTCCTACTAATGTTCT+TGG + chr4_2:6515914-6515933 Msa0585560:intron 40.0%
ATTCAAATCAAGGGCAACCA+AGG - chr4_2:6515996-6516015 None:intergenic 40.0%
GTGGAAGGCCAATTAAAGTT+GGG - chr4_2:6516064-6516083 None:intergenic 40.0%
TGTGGAAGGCCAATTAAAGT+TGG - chr4_2:6516065-6516084 None:intergenic 40.0%
!! TAGACTCTGGGACAAATTAG+CGG - chr4_2:6516090-6516109 None:intergenic 40.0%
! ATTGATTCCTGGAGTCTTTC+TGG - chr4_2:6516419-6516438 None:intergenic 40.0%
TAGCTGATGAGAATGTCTTC+AGG + chr4_2:6516469-6516488 Msa0585560:CDS 40.0%
TCCAAACTACCAGAGAGAAA+AGG + chr4_2:6516618-6516637 Msa0585560:intron 40.0%
! TCCTTTTCTCTCTGGTAGTT+TGG - chr4_2:6516622-6516641 None:intergenic 40.0%
AAACTACCAGAGAGAAAAGG+AGG + chr4_2:6516621-6516640 Msa0585560:intron 40.0%
!!! CTAGTTGCTTTTCCAACTGA+AGG - chr4_2:6516663-6516682 None:intergenic 40.0%
CTGCAAGTCATGAAACATCT+TGG + chr4_2:6516730-6516749 Msa0585560:CDS 40.0%
TCTTGGAGATCAAGATGATG+CGG + chr4_2:6516747-6516766 Msa0585560:CDS 40.0%
GGAAGAGATGAATTCAGAGT+TGG + chr4_2:6516786-6516805 Msa0585560:CDS 40.0%
CCTGTAGTTCATCATTGCTT+TGG - chr4_2:6516876-6516895 None:intergenic 40.0%
CCAAAGCAATGATGAACTAC+AGG + chr4_2:6516873-6516892 Msa0585560:CDS 40.0%
ATGATGAACTACAGGAAGCT+CGG + chr4_2:6516881-6516900 Msa0585560:CDS 40.0%
GATTATCTCCACCTCTCTTT+AGG + chr4_2:6517087-6517106 Msa0585560:intron 40.0%
GGGTTAAATGAAATGCTGAC+TGG + chr4_2:6517207-6517226 Msa0585560:CDS 40.0%
TAATATTGGCACCAAGAGGA+TGG + chr4_2:6517239-6517258 Msa0585560:CDS 40.0%
AATATTGGCACCAAGAGGAT+GGG + chr4_2:6517240-6517259 Msa0585560:CDS 40.0%
TCACAAAAACCTTCTGGTCA+AGG - chr4_2:6517269-6517288 None:intergenic 40.0%
AGGCATTCACAAAAACCTTC+TGG - chr4_2:6517275-6517294 None:intergenic 40.0%
TTCTGATGAAGCTGGGATAA+AGG + chr4_2:6517311-6517330 Msa0585560:CDS 40.0%
CTGTTGAGCTTTGCTCTTTA+TGG + chr4_2:6517334-6517353 Msa0585560:CDS 40.0%
GCTTTATGGTACATACCACA+TGG - chr4_2:6517419-6517438 None:intergenic 40.0%
CAAAAGCTGAAGAAGGAATG+GGG + chr4_2:6517551-6517570 Msa0585560:CDS 40.0%
ATGTGCATATGACTGCAACT+GGG - chr4_2:6517866-6517885 None:intergenic 40.0%
CTGGATGATTGCAATTGAAG+TGG + chr4_2:6518062-6518081 Msa0585560:intron 40.0%
GCTTTGCACCTCACATATAT+TGG + chr4_2:6518266-6518285 Msa0585560:intron 40.0%
AGTTTATCTTGAGGCTTTGC+AGG + chr4_2:6518554-6518573 Msa0585560:intron 40.0%
GTTTATCTTGAGGCTTTGCA+GGG + chr4_2:6518555-6518574 Msa0585560:intron 40.0%
TACATCATATCTCAATCGGG+AGG + chr4_2:6518584-6518603 Msa0585560:three_prime_UTR 40.0%
GTTATCACGGTTATCGCATA+CGG + chr4_2:6518808-6518827 Msa0585560:three_prime_UTR 40.0%
ATGGAAGCTCAGCTCAGAAA+AGG - chr4_2:6513904-6513923 None:intergenic 45.0%
CCAGCCCTTAACTCTTCATA+TGG - chr4_2:6514698-6514717 None:intergenic 45.0%
CCATATGAAGAGTTAAGGGC+TGG + chr4_2:6514695-6514714 Msa0585560:CDS 45.0%
ACTTAGGTGTCCGTATTGCT+CGG + chr4_2:6514748-6514767 Msa0585560:CDS 45.0%
TTGCTCGGGAAAGAAAAAGC+AGG + chr4_2:6514763-6514782 Msa0585560:CDS 45.0%
! ATCTGGAGTAGGCAAAGGTT+CGG + chr4_2:6514817-6514836 Msa0585560:CDS 45.0%
AGTTCTCAACTTGGACAGGT+TGG - chr4_2:6514958-6514977 None:intergenic 45.0%
ACGTAGTTCTCAACTTGGAC+AGG - chr4_2:6514962-6514981 None:intergenic 45.0%
GCCAAACGTAGTTCTCAACT+TGG - chr4_2:6514967-6514986 None:intergenic 45.0%
TTGACAAGTATGCCTGTCCA+CGG - chr4_2:6514989-6515008 None:intergenic 45.0%
GGCTGTTCATACGTTCTTGA+TGG + chr4_2:6515069-6515088 Msa0585560:CDS 45.0%
TTGGAATTCCATGGACTTGC+AGG + chr4_2:6515198-6515217 Msa0585560:CDS 45.0%
TAATTGTCCAGGGTCGATTG+GGG + chr4_2:6515264-6515283 Msa0585560:CDS 45.0%
AGTACCTTCGCAACAAAGGA+AGG + chr4_2:6515287-6515306 Msa0585560:CDS 45.0%
TATGTCCTTGAGTAGGATGC+TGG + chr4_2:6515441-6515460 Msa0585560:CDS 45.0%
GGGGGAAAAAACACTTGCAT+TGG + chr4_2:6515549-6515568 Msa0585560:intron 45.0%
! TGAGGAGGTACGAAGGATAT+TGG + chr4_2:6515636-6515655 Msa0585560:CDS 45.0%
AGGTACTAACCGATCAAGAG+AGG + chr4_2:6515740-6515759 Msa0585560:CDS 45.0%
CAGTTTCTGCCTCTCTTGAT+CGG - chr4_2:6515752-6515771 None:intergenic 45.0%
ACTGGAAGAGGACAAGAAGA+AGG + chr4_2:6515768-6515787 Msa0585560:CDS 45.0%
!! AGACTCTGGGACAAATTAGC+GGG - chr4_2:6516089-6516108 None:intergenic 45.0%
AAGGCTCCTCAAGCATGTAA+AGG - chr4_2:6516331-6516350 None:intergenic 45.0%
ATTCCTGGAGTCTTTCTGGA+AGG - chr4_2:6516415-6516434 None:intergenic 45.0%
! CAACTGGAGTGATTGATTCC+TGG - chr4_2:6516430-6516449 None:intergenic 45.0%
CAGGAATCAATCACTCCAGT+TGG + chr4_2:6516428-6516447 Msa0585560:CDS 45.0%
AGCTATCTTCTGCTCCTTTG+AGG - chr4_2:6516454-6516473 None:intergenic 45.0%
!! CAGGCTTGTTGAAGAGCAAA+AGG + chr4_2:6516488-6516507 Msa0585560:CDS 45.0%
AAAGGTTTGCCCTACTCACT+TGG + chr4_2:6516506-6516525 Msa0585560:intron 45.0%
GGTGGAGATAATCTTCATGC+AGG - chr4_2:6517080-6517099 None:intergenic 45.0%
TGAGCTTTGCTCTTTATGGC+AGG + chr4_2:6517338-6517357 Msa0585560:CDS 45.0%
!! AGCTTGGCACCCTTTTAAAG+TGG + chr4_2:6517377-6517396 Msa0585560:CDS 45.0%
GCTACGCAAAAAACAGAGCA+TGG - chr4_2:6517441-6517460 None:intergenic 45.0%
AAACAGTATACCCACCACTG+GGG - chr4_2:6517631-6517650 None:intergenic 45.0%
CAAACAGTATACCCACCACT+GGG - chr4_2:6517632-6517651 None:intergenic 45.0%
!! CAGTGGTGGGTATACTGTTT+GGG + chr4_2:6517631-6517650 Msa0585560:CDS 45.0%
AAGCAACTTAAGCGCAAGAG+AGG + chr4_2:6517725-6517744 Msa0585560:CDS 45.0%
AAGAGAGGAGGATAGGCAAA+AGG + chr4_2:6517740-6517759 Msa0585560:exon 45.0%
CATGTGCATATGACTGCAAC+TGG - chr4_2:6517867-6517886 None:intergenic 45.0%
!! CAGGAGCACCAATATATGTG+AGG - chr4_2:6518277-6518296 None:intergenic 45.0%
GACAGACAGGAGCAATTGAA+AGG - chr4_2:6518349-6518368 None:intergenic 45.0%
TCAATTGCTCCTGTCTGTCA+TGG + chr4_2:6518350-6518369 Msa0585560:intron 45.0%
ATCATATCTCAATCGGGAGG+TGG + chr4_2:6518587-6518606 Msa0585560:three_prime_UTR 45.0%
TGAATGCACGAAACCCTAGG+AGG - chr4_2:6513857-6513876 None:intergenic 50.0%
! GATCAGTGAGTCTGAGATCG+AGG + chr4_2:6514658-6514677 Msa0585560:CDS 50.0%
CTTAGGTGTCCGTATTGCTC+GGG + chr4_2:6514749-6514768 Msa0585560:CDS 50.0%
GATCTGTTGCAGCATGCATC+TGG + chr4_2:6514800-6514819 Msa0585560:CDS 50.0%
! TTGCAGCATGCATCTGGAGT+AGG + chr4_2:6514806-6514825 Msa0585560:CDS 50.0%
! CATGCATCTGGAGTAGGCAA+AGG + chr4_2:6514812-6514831 Msa0585560:CDS 50.0%
ACGACAGCTAAGGTCAAAGC+CGG - chr4_2:6514935-6514954 None:intergenic 50.0%
TTGAGAACTACGTTTGGCCG+TGG + chr4_2:6514969-6514988 Msa0585560:CDS 50.0%
! CTTGATGGATGGTAACTGCG+TGG + chr4_2:6515084-6515103 Msa0585560:CDS 50.0%
TGAACTGTCCTGCAAGTCCA+TGG - chr4_2:6515209-6515228 None:intergenic 50.0%
TCAGCCTTCCTTTGTTGCGA+AGG - chr4_2:6515294-6515313 None:intergenic 50.0%
TTCGCAACAAAGGAAGGCTG+AGG + chr4_2:6515293-6515312 Msa0585560:CDS 50.0%
CTTGTTTAGGTCTCTGCTCC+AGG - chr4_2:6515716-6515735 None:intergenic 50.0%
CAGAGACCTAAACAAGCGTG+AGG + chr4_2:6515720-6515739 Msa0585560:CDS 50.0%
CGATCAAGAGAGGCAGAAAC+TGG + chr4_2:6515750-6515769 Msa0585560:CDS 50.0%
AGAGAGGCAGAAACTGGAAG+AGG + chr4_2:6515756-6515775 Msa0585560:CDS 50.0%
!! ACAAATTAGCGGGCTGTGGA+AGG - chr4_2:6516079-6516098 None:intergenic 50.0%
TGTCCTTCCAGAAAGACTCC+AGG + chr4_2:6516409-6516428 Msa0585560:intron 50.0%
! ATCACTCCAGTTGGCCTCAA+AGG + chr4_2:6516437-6516456 Msa0585560:CDS 50.0%
CTACCAGAGAGAAAAGGAGG+AGG + chr4_2:6516624-6516643 Msa0585560:intron 50.0%
GTTAACGAGTACAACCCCAG+TGG + chr4_2:6517614-6517633 Msa0585560:CDS 50.0%
CCAAACAGTATACCCACCAC+TGG - chr4_2:6517633-6517652 None:intergenic 50.0%
!! CCAGTGGTGGGTATACTGTT+TGG + chr4_2:6517630-6517649 Msa0585560:CDS 50.0%
GGTATACTGTTTGGGAGCTG+TGG + chr4_2:6517639-6517658 Msa0585560:CDS 50.0%
CAACTTAAGCGCAAGAGAGG+AGG + chr4_2:6517728-6517747 Msa0585560:CDS 50.0%
TAAGCGCAAGAGAGGAGGAT+AGG + chr4_2:6517733-6517752 Msa0585560:CDS 50.0%
CGACAGCTAAGGTCAAAGCC+GGG - chr4_2:6514934-6514953 None:intergenic 55.0%
! GACAGGTTGGACGACAGCTA+AGG - chr4_2:6514945-6514964 None:intergenic 55.0%
AACTACGTTTGGCCGTGGAC+AGG + chr4_2:6514974-6514993 Msa0585560:CDS 55.0%
!! GGGGAGTACCTTCGCAACAA+AGG + chr4_2:6515283-6515302 Msa0585560:CDS 55.0%
GTCCTTGAGTAGGATGCTGG+AGG + chr4_2:6515444-6515463 Msa0585560:CDS 55.0%
CTCCTCCAGCATCCTACTCA+AGG - chr4_2:6515449-6515468 None:intergenic 55.0%
CATGCAGCGTAAAGCTCGTG+AGG + chr4_2:6515618-6515637 Msa0585560:CDS 55.0%
! AAGCTCGTGAGGAGGTACGA+AGG + chr4_2:6515629-6515648 Msa0585560:CDS 55.0%
!! TGGGACAAATTAGCGGGCTG+TGG - chr4_2:6516083-6516102 None:intergenic 55.0%
!! TCTGCTCCTTTGAGGCCAAC+TGG - chr4_2:6516446-6516465 None:intergenic 55.0%
! AGGCCTCCTCCTTTTCTCTC+TGG - chr4_2:6516630-6516649 None:intergenic 55.0%
GTCAAGGTCTCCCATCCTCT+TGG - chr4_2:6517253-6517272 None:intergenic 55.0%
GATGGGAGACCTTGACCAGA+AGG + chr4_2:6517257-6517276 Msa0585560:CDS 55.0%
AACGAGTACAACCCCAGTGG+TGG + chr4_2:6517617-6517636 Msa0585560:CDS 55.0%
ACGAGTACAACCCCAGTGGT+GGG + chr4_2:6517618-6517637 Msa0585560:CDS 55.0%
AGCAGACCAAGTACCTCGCC+CGG + chr4_2:6514913-6514932 Msa0585560:CDS 60.0%
! TCAAAGCCGGGCGAGGTACT+TGG - chr4_2:6514922-6514941 None:intergenic 60.0%
AGGTACTCCCCAATCGACCC+TGG - chr4_2:6515274-6515293 None:intergenic 60.0%
GCAGCGTAAAGCTCGTGAGG+AGG + chr4_2:6515621-6515640 Msa0585560:CDS 60.0%
GCTAAGGTCAAAGCCGGGCG+AGG - chr4_2:6514929-6514948 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 6513836 6518885 6513836 ID=Msa0585560;Name=Msa0585560
chr4_2 mRNA 6513836 6518885 6513836 ID=Msa0585560-mRNA-1;Parent=Msa0585560;Name=Msa0585560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=115|1|1|1|0.71|0.62|8|317|626
chr4_2 exon 6513836 6513945 6513836 ID=Msa0585560-mRNA-1:exon:1592;Parent=Msa0585560-mRNA-1
chr4_2 exon 6514624 6515499 6514624 ID=Msa0585560-mRNA-1:exon:1593;Parent=Msa0585560-mRNA-1
chr4_2 exon 6515608 6515789 6515608 ID=Msa0585560-mRNA-1:exon:1594;Parent=Msa0585560-mRNA-1
chr4_2 exon 6516420 6516509 6516420 ID=Msa0585560-mRNA-1:exon:1595;Parent=Msa0585560-mRNA-1
chr4_2 exon 6516631 6516918 6516631 ID=Msa0585560-mRNA-1:exon:1596;Parent=Msa0585560-mRNA-1
chr4_2 exon 6517207 6517422 6517207 ID=Msa0585560-mRNA-1:exon:1597;Parent=Msa0585560-mRNA-1
chr4_2 exon 6517521 6517761 6517521 ID=Msa0585560-mRNA-1:exon:1598;Parent=Msa0585560-mRNA-1
chr4_2 exon 6518576 6518885 6518576 ID=Msa0585560-mRNA-1:exon:1599;Parent=Msa0585560-mRNA-1
chr4_2 five_prime_UTR 6513836 6513945 6513836 ID=Msa0585560-mRNA-1:five_prime_utr;Parent=Msa0585560-mRNA-1
chr4_2 five_prime_UTR 6514624 6514628 6514624 ID=Msa0585560-mRNA-1:five_prime_utr;Parent=Msa0585560-mRNA-1
chr4_2 CDS 6514629 6515499 6514629 ID=Msa0585560-mRNA-1:cds;Parent=Msa0585560-mRNA-1
chr4_2 CDS 6515608 6515789 6515608 ID=Msa0585560-mRNA-1:cds;Parent=Msa0585560-mRNA-1
chr4_2 CDS 6516420 6516509 6516420 ID=Msa0585560-mRNA-1:cds;Parent=Msa0585560-mRNA-1
chr4_2 CDS 6516631 6516918 6516631 ID=Msa0585560-mRNA-1:cds;Parent=Msa0585560-mRNA-1
chr4_2 CDS 6517207 6517422 6517207 ID=Msa0585560-mRNA-1:cds;Parent=Msa0585560-mRNA-1
chr4_2 CDS 6517521 6517754 6517521 ID=Msa0585560-mRNA-1:cds;Parent=Msa0585560-mRNA-1
chr4_2 three_prime_UTR 6517755 6517761 6517755 ID=Msa0585560-mRNA-1:three_prime_utr;Parent=Msa0585560-mRNA-1
chr4_2 three_prime_UTR 6518576 6518885 6518576 ID=Msa0585560-mRNA-1:three_prime_utr;Parent=Msa0585560-mRNA-1
Gene Sequence

>Msa0585560

ATGGACTACAGCTCTGAAGAAGAGTCAGAGATCAGTGAGTCTGAGATCGAGGAATACTCTGAGAAACCATATGAAGAGTTAAGGGCTGGTAAATACAAAGTGAAGAACAATAATGGGACACTTAGGTGTCCGTATTGCTCGGGAAAGAAAAAGCAGGAATTCAAATATAAGGATCTGTTGCAGCATGCATCTGGAGTAGGCAAAGGTTCGGCAAACAGAAGCACAAAACAGAAGGCAAACCATCTGGCTCTTGCAAAGTTTTTGAGGACTGACTTAGCAAATGAAGCAGACCAAGTACCTCGCCCGGCTTTGACCTTAGCTGTCGTCCAACCTGTCCAAGTTGAGAACTACGTTTGGCCGTGGACAGGCATACTTGTCAATATAAGCAAATCACATGATTCTGGATACTTGCAAAAGGAATTTGCTAAGTACAAACCATTGGCTGTTCATACGTTCTTGATGGATGGTAACTGCGTGGCTGTTATAGACTTCAACAATGACTGGAATGGGTTTATGAATGCAAGTGAGCTTGAGAAATGGTTTGAGACTAAACGTTGTGGAAAAAAGGATTGGAATTCCATGGACTTGCAGGACAGTTCAGAGATTTACGGTTGGGTTGCACGTGAAGATGATTATAATTGTCCAGGGTCGATTGGGGAGTACCTTCGCAACAAAGGAAGGCTGAGGACAATTTCAGATATAGTTCAAGAAGCATCTCAAAGCAGAAATAGCATTGTGGAAAACCTGGCAAATGAGATTGATATTACTAATGAAAATCTCAACAAGATGCAGTATAGGTATAATGAGAAGACTATGTCCTTGAGTAGGATGCTGGAGGAGAAAGACAAACTTCACAATGCTTTTGTTGAAGAGTCAAGGAGCATGCAGCGTAAAGCTCGTGAGGAGGTACGAAGGATATTGGAAGAACAAGAAAAGTTGAGTAATGAATTGGATGAAAAAATGAGGAAGCTTGATACCTGGAGCAGAGACCTAAACAAGCGTGAGGTACTAACCGATCAAGAGAGGCAGAAACTGGAAGAGGACAAGAAGAAGAAAGACTCCAGGAATCAATCACTCCAGTTGGCCTCAAAGGAGCAGAAGATAGCTGATGAGAATGTCTTCAGGCTTGTTGAAGAGCAAAAGAGAGAAAAGGAGGAGGCCTTAAACAAGATCCTTCAGTTGGAAAAGCAACTAGATGCCAAACAAAAATTGGAAATGGAAATTGAAGAACTAAAAGGGAAACTGCAAGTCATGAAACATCTTGGAGATCAAGATGATGCGGCTATTAAGAAAAAAATGGAAGAGATGAATTCAGAGTTGGAAGACAAAATAGAAAGTTTGGAAGATATGGAGTCTATGAATTTAACGCTTATTGTCAAGGAGCGCCAAAGCAATGATGAACTACAGGAAGCTCGGAAAGAATTAATAGAAGGGTTAAATGAAATGCTGACTGGTGCCAAAACTAATATTGGCACCAAGAGGATGGGAGACCTTGACCAGAAGGTTTTTGTGAATGCCTGCAAGAAAAGATTTTCTTCTGATGAAGCTGGGATAAAGGCTGTTGAGCTTTGCTCTTTATGGCAGGAAAATGTGAAGAACTCAGCTTGGCACCCTTTTAAAGTGGTTACAGAGAATGATAACCATGTGTCAGTTATAGATGAGAAAGATGAGAAACTACAAAAGCTGAAGAAGGAATGGGGAGACGAGATATATTCAGCTGTTGTAACAGCCTTAAAAGAAGTTAACGAGTACAACCCCAGTGGTGGGTATACTGTTTGGGAGCTGTGGAACTTCAAAGAAAATAGGAAGGCAACACTGAAAGAAGTGATCACTTATATTGTGGATCACATGAAGCAACTTAAGCGCAAGAGAGGAGGATAG
Protein sequence

>Msa0585560

MDYSSEEESEISESEIEEYSEKPYEELRAGKYKVKNNNGTLRCPYCSGKKKQEFKYKDLLQHASGVGKGSANRSTKQKANHLALAKFLRTDLANEADQVPRPALTLAVVQPVQVENYVWPWTGILVNISKSHDSGYLQKEFAKYKPLAVHTFLMDGNCVAVIDFNNDWNGFMNASELEKWFETKRCGKKDWNSMDLQDSSEIYGWVAREDDYNCPGSIGEYLRNKGRLRTISDIVQEASQSRNSIVENLANEIDITNENLNKMQYRYNEKTMSLSRMLEEKDKLHNAFVEESRSMQRKAREEVRRILEEQEKLSNELDEKMRKLDTWSRDLNKREVLTDQERQKLEEDKKKKDSRNQSLQLASKEQKIADENVFRLVEEQKREKEEALNKILQLEKQLDAKQKLEMEIEELKGKLQVMKHLGDQDDAAIKKKMEEMNSELEDKIESLEDMESMNLTLIVKERQSNDELQEARKELIEGLNEMLTGAKTNIGTKRMGDLDQKVFVNACKKRFSSDEAGIKAVELCSLWQENVKNSAWHPFKVVTENDNHVSVIDEKDEKLQKLKKEWGDEIYSAVVTALKEVNEYNPSGGYTVWELWNFKENRKATLKEVITYIVDHMKQLKRKRGG*