Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431880 | XP_003609734.2 | 81.098 | 164 | 17 | 2 | 72 | 221 | 226 | 389 | 7.96e-86 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431880 | sp|Q9FJ06|TBL4_ARATH | 50.299 | 167 | 67 | 4 | 70 | 221 | 210 | 375 | 1.36e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431880 | G7JMR6 | 81.098 | 164 | 17 | 2 | 72 | 221 | 226 | 389 | 3.80e-86 | 272 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052770 | Msa0431880 | 0.803490 | 3.399990e-49 | -8.615850e-47 |
| Msa0431880 | Msa0520750 | 0.871302 | 7.578228e-67 | -8.615850e-47 |
| Msa0431880 | Msa0893710 | 0.806799 | 6.900954e-50 | -8.615850e-47 |
| Msa0431880 | Msa1173140 | 0.804623 | 1.976570e-49 | -8.615850e-47 |
| Msa0431880 | Msa1368590 | 0.927808 | 7.008387e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431880 | MtrunA17_Chr4g0068111 | 81.098 | 164 | 17 | 2 | 72 | 221 | 226 | 389 | 7.32e-90 | 272 |
| Msa0431880 | MtrunA17_Chr7g0258851 | 47.134 | 157 | 69 | 2 | 78 | 221 | 366 | 521 | 3.62e-45 | 158 |
| Msa0431880 | MtrunA17_Chr1g0175671 | 39.013 | 223 | 102 | 6 | 30 | 221 | 224 | 443 | 2.52e-44 | 155 |
| Msa0431880 | MtrunA17_Chr8g0368461 | 47.771 | 157 | 67 | 2 | 78 | 221 | 308 | 462 | 3.22e-43 | 152 |
| Msa0431880 | MtrunA17_Chr1g0213281 | 41.081 | 185 | 92 | 4 | 51 | 221 | 268 | 449 | 1.61e-42 | 150 |
| Msa0431880 | MtrunA17_Chr5g0413271 | 45.570 | 158 | 71 | 2 | 77 | 221 | 255 | 410 | 1.19e-40 | 144 |
| Msa0431880 | MtrunA17_Chr4g0071391 | 39.490 | 157 | 81 | 2 | 78 | 221 | 227 | 382 | 4.91e-34 | 126 |
| Msa0431880 | MtrunA17_Chr1g0150371 | 94.545 | 55 | 2 | 1 | 24 | 78 | 61 | 114 | 3.34e-29 | 107 |
| Msa0431880 | MtrunA17_Chr7g0269991 | 39.103 | 156 | 79 | 3 | 79 | 221 | 256 | 408 | 8.10e-28 | 109 |
| Msa0431880 | MtrunA17_Chr3g0105301 | 31.098 | 164 | 86 | 3 | 79 | 221 | 155 | 312 | 3.19e-19 | 85.1 |
| Msa0431880 | MtrunA17_Chr2g0287901 | 28.947 | 152 | 94 | 2 | 62 | 200 | 200 | 350 | 1.71e-16 | 77.4 |
| Msa0431880 | MtrunA17_Chr7g0259711 | 29.412 | 153 | 92 | 3 | 62 | 200 | 194 | 344 | 1.94e-16 | 77.4 |
| Msa0431880 | MtrunA17_Chr4g0045951 | 27.184 | 206 | 115 | 6 | 42 | 221 | 110 | 306 | 2.74e-16 | 76.6 |
| Msa0431880 | MtrunA17_Chr4g0045941 | 26.220 | 164 | 96 | 4 | 74 | 221 | 140 | 294 | 6.71e-15 | 72.4 |
| Msa0431880 | MtrunA17_Chr1g0171171 | 24.528 | 159 | 106 | 2 | 72 | 221 | 157 | 310 | 1.72e-14 | 71.6 |
| Msa0431880 | MtrunA17_Chr3g0126021 | 34.286 | 105 | 69 | 0 | 80 | 184 | 253 | 357 | 2.71e-14 | 71.2 |
| Msa0431880 | MtrunA17_Chr2g0283581 | 27.215 | 158 | 94 | 5 | 78 | 221 | 152 | 302 | 2.92e-14 | 70.9 |
| Msa0431880 | MtrunA17_Chr5g0430371 | 32.075 | 106 | 66 | 1 | 79 | 184 | 170 | 269 | 3.49e-14 | 70.9 |
| Msa0431880 | MtrunA17_Chr1g0210771 | 26.974 | 152 | 96 | 3 | 79 | 221 | 170 | 315 | 1.51e-13 | 68.9 |
| Msa0431880 | MtrunA17_Chr2g0314801 | 30.233 | 129 | 74 | 3 | 108 | 221 | 169 | 296 | 2.04e-13 | 68.2 |
| Msa0431880 | MtrunA17_Chr8g0384151 | 32.075 | 106 | 72 | 0 | 79 | 184 | 209 | 314 | 4.01e-13 | 67.8 |
| Msa0431880 | MtrunA17_Chr2g0314791 | 31.429 | 140 | 81 | 4 | 79 | 211 | 148 | 279 | 7.32e-13 | 66.6 |
| Msa0431880 | MtrunA17_Chr4g0005491 | 27.053 | 207 | 121 | 8 | 38 | 221 | 137 | 336 | 2.95e-12 | 65.1 |
| Msa0431880 | MtrunA17_Chr2g0325481 | 27.848 | 158 | 93 | 4 | 78 | 221 | 161 | 311 | 6.03e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431880 | AT5G49340.1 | 50.299 | 167 | 67 | 4 | 70 | 221 | 210 | 375 | 1.38e-46 | 160 |
| Msa0431880 | AT3G12060.1 | 45.223 | 157 | 72 | 2 | 78 | 221 | 314 | 469 | 3.60e-44 | 155 |
| Msa0431880 | AT5G06700.1 | 44.586 | 157 | 73 | 2 | 78 | 221 | 373 | 528 | 3.34e-43 | 153 |
| Msa0431880 | AT1G60790.1 | 46.951 | 164 | 72 | 3 | 72 | 221 | 303 | 465 | 3.95e-41 | 147 |
| Msa0431880 | AT5G20590.1 | 38.217 | 157 | 83 | 2 | 78 | 221 | 260 | 415 | 1.71e-34 | 128 |
| Msa0431880 | AT3G62390.1 | 37.179 | 156 | 82 | 3 | 79 | 221 | 257 | 409 | 2.45e-30 | 117 |
| Msa0431880 | AT5G20590.2 | 40.952 | 105 | 61 | 1 | 78 | 182 | 260 | 363 | 1.10e-24 | 100 |
| Msa0431880 | AT3G62390.2 | 40.566 | 106 | 61 | 1 | 79 | 184 | 257 | 360 | 8.21e-24 | 98.6 |
| Msa0431880 | AT5G19160.1 | 32.386 | 176 | 100 | 4 | 48 | 209 | 191 | 361 | 1.47e-23 | 98.2 |
| Msa0431880 | AT5G19160.2 | 34.783 | 138 | 84 | 3 | 48 | 184 | 191 | 323 | 2.03e-21 | 91.3 |
| Msa0431880 | AT5G58600.1 | 31.765 | 170 | 83 | 5 | 56 | 206 | 163 | 318 | 3.27e-21 | 91.3 |
| Msa0431880 | AT3G06080.2 | 29.101 | 189 | 114 | 5 | 48 | 221 | 195 | 378 | 2.03e-19 | 86.3 |
| Msa0431880 | AT5G58600.2 | 33.846 | 130 | 71 | 3 | 56 | 184 | 163 | 278 | 2.79e-19 | 84.3 |
| Msa0431880 | AT3G06080.1 | 31.884 | 138 | 88 | 3 | 48 | 184 | 195 | 327 | 1.74e-17 | 80.1 |
| Msa0431880 | AT3G11570.1 | 26.974 | 152 | 98 | 1 | 83 | 221 | 205 | 356 | 1.42e-16 | 78.2 |
| Msa0431880 | AT1G29050.1 | 24.272 | 206 | 122 | 5 | 42 | 221 | 126 | 323 | 1.52e-15 | 75.1 |
| Msa0431880 | AT1G48880.1 | 28.750 | 160 | 101 | 2 | 25 | 184 | 193 | 339 | 5.17e-15 | 73.6 |
| Msa0431880 | AT1G78710.1 | 28.155 | 206 | 114 | 8 | 42 | 221 | 102 | 299 | 1.11e-14 | 72.4 |
| Msa0431880 | AT5G06230.1 | 27.044 | 159 | 102 | 2 | 62 | 207 | 171 | 328 | 4.06e-14 | 70.9 |
| Msa0431880 | AT5G06230.2 | 27.044 | 159 | 102 | 2 | 62 | 207 | 130 | 287 | 4.15e-14 | 70.9 |
| Msa0431880 | AT2G31110.2 | 25.625 | 160 | 94 | 4 | 78 | 221 | 156 | 306 | 1.87e-13 | 68.9 |
| Msa0431880 | AT2G31110.1 | 24.845 | 161 | 96 | 4 | 77 | 221 | 7 | 158 | 1.89e-13 | 67.4 |
| Msa0431880 | AT2G30900.1 | 29.268 | 164 | 81 | 5 | 80 | 221 | 158 | 308 | 8.73e-12 | 63.9 |
| Msa0431880 | AT3G54260.1 | 24.812 | 133 | 89 | 3 | 79 | 205 | 162 | 289 | 2.01e-11 | 63.2 |
| Msa0431880 | AT2G30010.1 | 29.060 | 117 | 75 | 3 | 70 | 184 | 160 | 270 | 5.15e-11 | 62.0 |
| Msa0431880 | AT2G30010.2 | 29.060 | 117 | 75 | 3 | 70 | 184 | 203 | 313 | 6.98e-11 | 61.6 |
| Msa0431880 | AT5G06230.3 | 27.731 | 119 | 85 | 1 | 62 | 180 | 171 | 288 | 8.36e-11 | 60.8 |
Find 63 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATGTTAATTAGGATTA+TGG | 0.236100 | 3_2:-84003852 | Msa0431880:intron |
| TTCCATTCTTGTACAAGAAA+TGG | 0.283805 | 3_2:+84003804 | None:intergenic |
| AGCTTGAAGCTTTGCGTTGC+TGG | 0.291568 | 3_2:+84005853 | None:intergenic |
| ACCTAACATACTTCCTATAA+TGG | 0.306753 | 3_2:+84003177 | None:intergenic |
| ATTAAATAAATTTAAATGCT+TGG | 0.321443 | 3_2:-84002980 | Msa0431880:three_prime_UTR |
| TTAAATAAATTTAAATGCTT+GGG | 0.333421 | 3_2:-84002979 | Msa0431880:three_prime_UTR |
| GTGCAGGATTTGATTGATAA+AGG | 0.344148 | 3_2:-84004667 | Msa0431880:intron |
| CACTGCCCCTTCAGATTCAT+AGG | 0.352061 | 3_2:+84004931 | None:intergenic |
| TCCATTCTTGTACAAGAAAT+GGG | 0.352802 | 3_2:+84003805 | None:intergenic |
| TGGGGATTTCACAATGTCTA+TGG | 0.361987 | 3_2:+84003824 | None:intergenic |
| CCCCATTTCTTGTACAAGAA+TGG | 0.370184 | 3_2:-84003806 | Msa0431880:CDS |
| AGCAAATTGAACCTGAGATT+TGG | 0.376406 | 3_2:+84005393 | None:intergenic |
| AAGATAGCTTTCATTTGTAA+TGG | 0.380265 | 3_2:+84003252 | None:intergenic |
| TTCCTCAAAGAGAAACTCTT+AGG | 0.383679 | 3_2:-84003761 | Msa0431880:CDS |
| AGCCTAAGAGTTTCTCTTTG+AGG | 0.386378 | 3_2:+84003759 | None:intergenic |
| GTGGTCTCTTACTCTCTGAT+TGG | 0.386694 | 3_2:-84005738 | Msa0431880:intron |
| AGATAGCTTTCATTTGTAAT+GGG | 0.396515 | 3_2:+84003253 | None:intergenic |
| TCATCATCTTCACTAGTAAA+GGG | 0.406935 | 3_2:+84004583 | None:intergenic |
| CGCATTCACTAACTTCAAAC+AGG | 0.413377 | 3_2:-84004560 | Msa0431880:intron |
| ATATGTGTGTGATCCATTAT+AGG | 0.428230 | 3_2:-84003190 | Msa0431880:exon |
| TCGACAATTCCCATTGTCAA+TGG | 0.442380 | 3_2:+84003220 | None:intergenic |
| GTCATCATCTTCACTAGTAA+AGG | 0.461764 | 3_2:+84004582 | None:intergenic |
| TGAGCTTCTTGCTGCTAAGC+AGG | 0.466569 | 3_2:-84004905 | Msa0431880:CDS |
| GAAGCTTTGCGTTGCTGGAA+GGG | 0.484454 | 3_2:+84005858 | None:intergenic |
| AGGATGAGACATTATCAATC+GGG | 0.489141 | 3_2:-84003128 | Msa0431880:three_prime_UTR |
| GAACGCTGGTGGAACGGCGG+TGG | 0.496006 | 3_2:+84005896 | None:intergenic |
| AAGGATGAGACATTATCAAT+CGG | 0.498917 | 3_2:-84003129 | Msa0431880:three_prime_UTR |
| CTACTGTTATGCCAAATCTC+AGG | 0.502528 | 3_2:-84005404 | Msa0431880:intron |
| TCCATTATAGGAAGTATGTT+AGG | 0.502786 | 3_2:-84003178 | Msa0431880:three_prime_UTR |
| TGAAGCTTTGCGTTGCTGGA+AGG | 0.503173 | 3_2:+84005857 | None:intergenic |
| CATTTAAGACATGGGCTAAG+TGG | 0.503496 | 3_2:-84003486 | Msa0431880:CDS |
| TAGAAATTTAGTGCAGCGTA+TGG | 0.518555 | 3_2:-84004623 | Msa0431880:CDS |
| AACTCTGGAGGTAAATGTGA+TGG | 0.519732 | 3_2:-84003286 | Msa0431880:CDS |
| GGCAAACCCTATGAATCTGA+AGG | 0.520434 | 3_2:-84004938 | Msa0431880:CDS |
| GGAAGTATGTTAGGTGGTGT+TGG | 0.525857 | 3_2:-84003169 | Msa0431880:three_prime_UTR |
| GCAGCATATCCATTGACAAT+GGG | 0.531435 | 3_2:-84003229 | Msa0431880:CDS |
| GTGGTCGAACGCTGGTGGAA+CGG | 0.545364 | 3_2:+84005890 | None:intergenic |
| ATTTAAGACATGGGCTAAGT+GGG | 0.550470 | 3_2:-84003485 | Msa0431880:CDS |
| GTAGAATTTGTTCAAACTCG+TGG | 0.551748 | 3_2:-84005779 | Msa0431880:five_prime_UTR |
| GAGCGGTGGTCGAACGCTGG+TGG | 0.557045 | 3_2:+84005885 | None:intergenic |
| ACTGCCCCTTCAGATTCATA+GGG | 0.561633 | 3_2:+84004932 | None:intergenic |
| ACTCTGGAGGTAAATGTGAT+GGG | 0.561757 | 3_2:-84003285 | Msa0431880:CDS |
| CCATTCTTGTACAAGAAATG+GGG | 0.584992 | 3_2:+84003806 | None:intergenic |
| GATGAGCGGTGGTCGAACGC+TGG | 0.590929 | 3_2:+84005882 | None:intergenic |
| TACAACAAGCATTTAAGACA+TGG | 0.597685 | 3_2:-84003495 | Msa0431880:CDS |
| AGCATCATAATATTGAGACT+TGG | 0.603108 | 3_2:+84003719 | None:intergenic |
| TGCAGCATATCCATTGACAA+TGG | 0.605023 | 3_2:-84003230 | Msa0431880:CDS |
| CTGGTGGAACGGCGGTGGAG+CGG | 0.610995 | 3_2:+84005901 | None:intergenic |
| CAGCGTATGGAATCATCTGT+GGG | 0.612923 | 3_2:-84004610 | Msa0431880:CDS |
| GCAAACCCTATGAATCTGAA+GGG | 0.614234 | 3_2:-84004937 | Msa0431880:CDS |
| ACAACAAGCATTTAAGACAT+GGG | 0.616597 | 3_2:-84003494 | Msa0431880:CDS |
| GCAGCGTATGGAATCATCTG+TGG | 0.620380 | 3_2:-84004611 | Msa0431880:CDS |
| GTCGAACGCTGGTGGAACGG+CGG | 0.620672 | 3_2:+84005893 | None:intergenic |
| CATCATCTTCACTAGTAAAG+GGG | 0.629037 | 3_2:+84004584 | None:intergenic |
| AGGAGAAACTACTTTCAGCA+AGG | 0.629801 | 3_2:-84003556 | Msa0431880:CDS |
| CTCTGGAGGTAAATGTGATG+GGG | 0.640338 | 3_2:-84003284 | Msa0431880:CDS |
| GGATGAGACATTATCAATCG+GGG | 0.648771 | 3_2:-84003127 | Msa0431880:three_prime_UTR |
| GCTGGAAGGGAGATGAGCGG+TGG | 0.652228 | 3_2:+84005871 | None:intergenic |
| CGTGTGCTTGCTATCAACTG+TGG | 0.660073 | 3_2:+84003456 | None:intergenic |
| ATTATAGGAAGTATGTTAGG+TGG | 0.660255 | 3_2:-84003175 | Msa0431880:three_prime_UTR |
| CAAACCCTATGAATCTGAAG+GGG | 0.696980 | 3_2:-84004936 | Msa0431880:CDS |
| GCTTCTTGCTGCTAAGCAGG+TGG | 0.701727 | 3_2:-84004902 | Msa0431880:intron |
| GTTGCTGGAAGGGAGATGAG+CGG | 0.756578 | 3_2:+84005868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATAAATTTAAATGCT+TGG | - | chr3_2:84005960-84005979 | Msa0431880:five_prime_UTR | 10.0% |
| !! | TTAAATAAATTTAAATGCTT+GGG | - | chr3_2:84005961-84005980 | Msa0431880:five_prime_UTR | 10.0% |
| !!! | TTTAATCTAATTTGAGTTTT+AGG | - | chr3_2:84003353-84003372 | Msa0431880:intron | 15.0% |
| !!! | ACTTAGTAAAAATTGAATTT+TGG | - | chr3_2:84003440-84003459 | Msa0431880:intron | 15.0% |
| !! | TTGAAATAAATTAAGTAACA+AGG | + | chr3_2:84003602-84003621 | None:intergenic | 15.0% |
| !! | GTTAACAAACAAAATTAAAT+AGG | + | chr3_2:84003650-84003669 | None:intergenic | 15.0% |
| !! | TTGTAATAATATACATATGT+TGG | - | chr3_2:84004199-84004218 | Msa0431880:intron | 15.0% |
| !! | ATTATTAATAAGTAGTTCAA+AGG | - | chr3_2:84005334-84005353 | Msa0431880:intron | 15.0% |
| !! | ATTAGATTAAACTCACAAAT+AGG | + | chr3_2:84003344-84003363 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTTAGATTCTTA+CGG | - | chr3_2:84003369-84003388 | Msa0431880:intron | 20.0% |
| !!! | TAAAAATTGAATTTTGGAGA+AGG | - | chr3_2:84003446-84003465 | Msa0431880:intron | 20.0% |
| !! | ATTCACGAATATTATAACAA+AGG | + | chr3_2:84003672-84003691 | None:intergenic | 20.0% |
| !! | AATTAAAAAGAGTGAAAAAG+GGG | + | chr3_2:84003936-84003955 | None:intergenic | 20.0% |
| !! | GAATTAAAAAGAGTGAAAAA+GGG | + | chr3_2:84003937-84003956 | None:intergenic | 20.0% |
| !! | TGAATTAAAAAGAGTGAAAA+AGG | + | chr3_2:84003938-84003957 | None:intergenic | 20.0% |
| !! | ATGTGCTTTATATTGAAATT+GGG | - | chr3_2:84003971-84003990 | Msa0431880:intron | 20.0% |
| !!! | ATTCTAGAAATGATATACAA+GGG | + | chr3_2:84004903-84004922 | None:intergenic | 20.0% |
| !!! | AATTCTAGAAATGATATACA+AGG | + | chr3_2:84004904-84004923 | None:intergenic | 20.0% |
| !! | AATCATGAAAAGACAAAAAA+TGG | - | chr3_2:84005277-84005296 | Msa0431880:intron | 20.0% |
| !! | ATCATGAAAAGACAAAAAAT+GGG | - | chr3_2:84005278-84005297 | Msa0431880:intron | 20.0% |
| !!! | TGAAATTTCAGTGTTTTTAA+AGG | - | chr3_2:84005881-84005900 | Msa0431880:five_prime_UTR | 20.0% |
| !! | TGATCTAATCTATGAGTTTT+AGG | - | chr3_2:84003253-84003272 | Msa0431880:CDS | 25.0% |
| ! | ATTAAAAAGAGTGAAAAAGG+GGG | + | chr3_2:84003935-84003954 | None:intergenic | 25.0% |
| ! | TTCAATATAAAGCACATCAA+AGG | + | chr3_2:84003968-84003987 | None:intergenic | 25.0% |
| ! | GATGTGCTTTATATTGAAAT+TGG | - | chr3_2:84003970-84003989 | Msa0431880:intron | 25.0% |
| !! | TGTTATACTTCAATGCATTT+TGG | - | chr3_2:84004075-84004094 | Msa0431880:intron | 25.0% |
| ! | TATGTAGAATTGGATTTGAA+TGG | - | chr3_2:84004107-84004126 | Msa0431880:intron | 25.0% |
| ! | TAATATAACAGTGACAATGT+CGG | - | chr3_2:84004131-84004150 | Msa0431880:intron | 25.0% |
| !! | TATACATATGTTGGTTGAAT+TGG | - | chr3_2:84004208-84004227 | Msa0431880:intron | 25.0% |
| !! | ATACATATGTTGGTTGAATT+GGG | - | chr3_2:84004209-84004228 | Msa0431880:intron | 25.0% |
| ! | AAGAACACACATTCAAATAT+AGG | + | chr3_2:84004458-84004477 | None:intergenic | 25.0% |
| ! | TTACATGAACAAAATCAAAG+AGG | + | chr3_2:84004560-84004579 | None:intergenic | 25.0% |
| ! | TTGTCAAATAGCAGTTATAT+CGG | - | chr3_2:84004687-84004706 | Msa0431880:intron | 25.0% |
| !!! | TGCTAGTAGATTTTAACAAA+CGG | - | chr3_2:84004763-84004782 | Msa0431880:intron | 25.0% |
| ! | TACACTACTAGATTAAAGTT+AGG | - | chr3_2:84004819-84004838 | Msa0431880:intron | 25.0% |
| ! | AAACTACTATACTAACTTAC+AGG | + | chr3_2:84004949-84004968 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTGACTGTAATT+TGG | - | chr3_2:84004959-84004978 | Msa0431880:intron | 25.0% |
| ! | TGTGATGTTAATTAGGATTA+TGG | - | chr3_2:84005088-84005107 | Msa0431880:intron | 25.0% |
| !! | GATATAATCATTTTCAACAC+AGG | - | chr3_2:84005244-84005263 | Msa0431880:intron | 25.0% |
| ! | TAGTTAAGTAATTGCTTCTA+TGG | - | chr3_2:84005605-84005624 | Msa0431880:intron | 25.0% |
| ! | AGATAGCTTTCATTTGTAAT+GGG | + | chr3_2:84005690-84005709 | None:intergenic | 25.0% |
| ! | AAGATAGCTTTCATTTGTAA+TGG | + | chr3_2:84005691-84005710 | None:intergenic | 25.0% |
| ! | TATACTTCAATGCATTTTGG+TGG | - | chr3_2:84004078-84004097 | Msa0431880:intron | 30.0% |
| !! | ATACTTCAATGCATTTTGGT+GGG | - | chr3_2:84004079-84004098 | Msa0431880:intron | 30.0% |
| AATATAACAGTGACAATGTC+GGG | - | chr3_2:84004132-84004151 | Msa0431880:intron | 30.0% | |
| TTGAATTGGGAATAAGATCT+AGG | - | chr3_2:84004222-84004241 | Msa0431880:intron | 30.0% | |
| TCATCATCTTCACTAGTAAA+GGG | + | chr3_2:84004360-84004379 | None:intergenic | 30.0% | |
| !!! | CTTTGATTTGCCTTTTTTGT+AGG | - | chr3_2:84004475-84004494 | Msa0431880:intron | 30.0% |
| ATGCATACATGAATGAGTAA+AGG | + | chr3_2:84004516-84004535 | None:intergenic | 30.0% | |
| AGATGCATTAGTTAGTCATA+AGG | - | chr3_2:84004595-84004614 | Msa0431880:CDS | 30.0% | |
| GAAATGATATACAAGGGAAA+AGG | + | chr3_2:84004897-84004916 | None:intergenic | 30.0% | |
| TAGTTTGACTGTAATTTGGT+GGG | - | chr3_2:84004963-84004982 | Msa0431880:intron | 30.0% | |
| ! | TTTTGCTTGCATAAGGTTTA+AGG | - | chr3_2:84005041-84005060 | Msa0431880:intron | 30.0% |
| GATGTGTTGTGATGTTAATT+AGG | - | chr3_2:84005081-84005100 | Msa0431880:intron | 30.0% | |
| TCCATTCTTGTACAAGAAAT+GGG | + | chr3_2:84005138-84005157 | None:intergenic | 30.0% | |
| TTCCATTCTTGTACAAGAAA+TGG | + | chr3_2:84005139-84005158 | None:intergenic | 30.0% | |
| AGCATCATAATATTGAGACT+TGG | + | chr3_2:84005224-84005243 | None:intergenic | 30.0% | |
| ! | CTATCAATTTTCATTCTTGC+AGG | - | chr3_2:84005364-84005383 | Msa0431880:intron | 30.0% |
| ! | TACAACAAGCATTTAAGACA+TGG | - | chr3_2:84005445-84005464 | Msa0431880:intron | 30.0% |
| ! | ACAACAAGCATTTAAGACAT+GGG | - | chr3_2:84005446-84005465 | Msa0431880:intron | 30.0% |
| ATATGTGTGTGATCCATTAT+AGG | - | chr3_2:84005750-84005769 | Msa0431880:five_prime_UTR | 30.0% | |
| ! | TCCATTATAGGAAGTATGTT+AGG | - | chr3_2:84005762-84005781 | Msa0431880:five_prime_UTR | 30.0% |
| ACCTAACATACTTCCTATAA+TGG | + | chr3_2:84005766-84005785 | None:intergenic | 30.0% | |
| ! | ATTATAGGAAGTATGTTAGG+TGG | - | chr3_2:84005765-84005784 | Msa0431880:five_prime_UTR | 30.0% |
| AAGGATGAGACATTATCAAT+CGG | - | chr3_2:84005811-84005830 | Msa0431880:five_prime_UTR | 30.0% | |
| ! | GTAGAATTTGTTCAAACTCG+TGG | - | chr3_2:84003161-84003180 | Msa0431880:three_prime_UTR | 35.0% |
| ! | AGCTTTTCATTCGAGGAAAT+AGG | - | chr3_2:84003404-84003423 | Msa0431880:intron | 35.0% |
| AGCAAATTGAACCTGAGATT+TGG | + | chr3_2:84003550-84003569 | None:intergenic | 35.0% | |
| TATTGAAATTGGGTTTCTGC+AGG | - | chr3_2:84003981-84004000 | Msa0431880:intron | 35.0% | |
| GTGGGTTCTTTATGTAGAAT+TGG | - | chr3_2:84004097-84004116 | Msa0431880:intron | 35.0% | |
| ATATAACAGTGACAATGTCG+GGG | - | chr3_2:84004133-84004152 | Msa0431880:intron | 35.0% | |
| GTGCAGGATTTGATTGATAA+AGG | - | chr3_2:84004273-84004292 | Msa0431880:intron | 35.0% | |
| TAGAAATTTAGTGCAGCGTA+TGG | - | chr3_2:84004317-84004336 | Msa0431880:intron | 35.0% | |
| CATCATCTTCACTAGTAAAG+GGG | + | chr3_2:84004359-84004378 | None:intergenic | 35.0% | |
| GTCATCATCTTCACTAGTAA+AGG | + | chr3_2:84004361-84004380 | None:intergenic | 35.0% | |
| !!! | TGATTTGCCTTTTTTGTAGG+TGG | - | chr3_2:84004478-84004497 | Msa0431880:intron | 35.0% |
| TGAAATGCCACCTACAAAAA+AGG | + | chr3_2:84004488-84004507 | None:intergenic | 35.0% | |
| TAGTTAGTCATAAGGTCTGT+AGG | - | chr3_2:84004603-84004622 | Msa0431880:CDS | 35.0% | |
| TCAATTCCTTCAATGAAGAG+AGG | - | chr3_2:84004638-84004657 | Msa0431880:CDS | 35.0% | |
| AAATCACTATAGTGCTGTAG+TGG | - | chr3_2:84004735-84004754 | Msa0431880:intron | 35.0% | |
| ! | TGTACCAGTGTTGTTAATCA+CGG | + | chr3_2:84004803-84004822 | None:intergenic | 35.0% |
| TGATATACAAGGGAAAAGGA+TGG | + | chr3_2:84004893-84004912 | None:intergenic | 35.0% | |
| GTAGTTTGACTGTAATTTGG+TGG | - | chr3_2:84004962-84004981 | Msa0431880:intron | 35.0% | |
| ACATGTTTGTGTTAGGATGT+TGG | - | chr3_2:84004986-84005005 | Msa0431880:intron | 35.0% | |
| ! | ATAGAGCTTTTGCTTGCATA+AGG | - | chr3_2:84005034-84005053 | Msa0431880:intron | 35.0% |
| CCATTCTTGTACAAGAAATG+GGG | + | chr3_2:84005137-84005156 | None:intergenic | 35.0% | |
| TTCCTCAAAGAGAAACTCTT+AGG | - | chr3_2:84005179-84005198 | Msa0431880:intron | 35.0% | |
| ! | TCATTTTCAACACAGGATAC+TGG | - | chr3_2:84005251-84005270 | Msa0431880:intron | 35.0% |
| ! | ATTTAAGACATGGGCTAAGT+GGG | - | chr3_2:84005455-84005474 | Msa0431880:intron | 35.0% |
| !! | GGTGTAACAAACTTTTGAGA+AGG | - | chr3_2:84005792-84005811 | Msa0431880:five_prime_UTR | 35.0% |
| AGGATGAGACATTATCAATC+GGG | - | chr3_2:84005812-84005831 | Msa0431880:five_prime_UTR | 35.0% | |
| ! | AACTCGTGGTCTTTTAAGCT+CGG | - | chr3_2:84003175-84003194 | Msa0431880:three_prime_UTR | 40.0% |
| ! | GTCTTTTAAGCTCGGATTTG+TGG | - | chr3_2:84003183-84003202 | Msa0431880:exon | 40.0% |
| CTACTGTTATGCCAAATCTC+AGG | - | chr3_2:84003536-84003555 | Msa0431880:CDS | 40.0% | |
| ! | GGTTCAATTTGCTCCTAAAC+AGG | - | chr3_2:84003557-84003576 | Msa0431880:CDS | 40.0% |
| ! | AGCTTGTTTGAAGCCTGTTT+AGG | + | chr3_2:84003573-84003592 | None:intergenic | 40.0% |
| GCAAACCCTATGAATCTGAA+GGG | - | chr3_2:84004003-84004022 | Msa0431880:intron | 40.0% | |
| CAAACCCTATGAATCTGAAG+GGG | - | chr3_2:84004004-84004023 | Msa0431880:intron | 40.0% | |
| ! | GTTTGCTTGTTGAATTGTGC+AGG | - | chr3_2:84004257-84004276 | Msa0431880:intron | 40.0% |
| CGCATTCACTAACTTCAAAC+AGG | - | chr3_2:84004380-84004399 | Msa0431880:intron | 40.0% | |
| GTCTTAGTGATGTCCTTGTA+TGG | - | chr3_2:84004861-84004880 | Msa0431880:intron | 40.0% | |
| GGATGTTGGATGTGTTTGTT+TGG | - | chr3_2:84005000-84005019 | Msa0431880:intron | 40.0% | |
| TGGGGATTTCACAATGTCTA+TGG | + | chr3_2:84005119-84005138 | None:intergenic | 40.0% | |
| CCCCATTTCTTGTACAAGAA+TGG | - | chr3_2:84005134-84005153 | Msa0431880:intron | 40.0% | |
| AGCCTAAGAGTTTCTCTTTG+AGG | + | chr3_2:84005184-84005203 | None:intergenic | 40.0% | |
| ! | TTTTCAACACAGGATACTGG+TGG | - | chr3_2:84005254-84005273 | Msa0431880:intron | 40.0% |
| AGGAGAAACTACTTTCAGCA+AGG | - | chr3_2:84005384-84005403 | Msa0431880:intron | 40.0% | |
| ! | CATTTAAGACATGGGCTAAG+TGG | - | chr3_2:84005454-84005473 | Msa0431880:intron | 40.0% |
| TCTATGGCTGAAATTTGCAG+AGG | - | chr3_2:84005621-84005640 | Msa0431880:intron | 40.0% | |
| CTATGGCTGAAATTTGCAGA+GGG | - | chr3_2:84005622-84005641 | Msa0431880:intron | 40.0% | |
| TATGGCTGAAATTTGCAGAG+GGG | - | chr3_2:84005623-84005642 | Msa0431880:intron | 40.0% | |
| ! | AACTCTGGAGGTAAATGTGA+TGG | - | chr3_2:84005654-84005673 | Msa0431880:intron | 40.0% |
| ! | ACTCTGGAGGTAAATGTGAT+GGG | - | chr3_2:84005655-84005674 | Msa0431880:intron | 40.0% |
| TGCAGCATATCCATTGACAA+TGG | - | chr3_2:84005710-84005729 | Msa0431880:intron | 40.0% | |
| GCAGCATATCCATTGACAAT+GGG | - | chr3_2:84005711-84005730 | Msa0431880:intron | 40.0% | |
| TCGACAATTCCCATTGTCAA+TGG | + | chr3_2:84005723-84005742 | None:intergenic | 40.0% | |
| GGATGAGACATTATCAATCG+GGG | - | chr3_2:84005813-84005832 | Msa0431880:five_prime_UTR | 40.0% | |
| GTGGTCTCTTACTCTCTGAT+TGG | - | chr3_2:84003202-84003221 | Msa0431880:CDS | 45.0% | |
| ! | GATGACGAGCTTTTCATTCG+AGG | - | chr3_2:84003397-84003416 | Msa0431880:intron | 45.0% |
| GGCAAACCCTATGAATCTGA+AGG | - | chr3_2:84004002-84004021 | Msa0431880:intron | 45.0% | |
| ACTGCCCCTTCAGATTCATA+GGG | + | chr3_2:84004011-84004030 | None:intergenic | 45.0% | |
| GACAATGTCGGGGACTAATT+TGG | - | chr3_2:84004143-84004162 | Msa0431880:intron | 45.0% | |
| AATGTCGGGGACTAATTTGG+TGG | - | chr3_2:84004146-84004165 | Msa0431880:intron | 45.0% | |
| CAGCGTATGGAATCATCTGT+GGG | - | chr3_2:84004330-84004349 | Msa0431880:intron | 45.0% | |
| !! | TAAGGTCTGTAGGAGTGCTT+AGG | - | chr3_2:84004613-84004632 | Msa0431880:CDS | 45.0% |
| !! | AAGGTCTGTAGGAGTGCTTA+GGG | - | chr3_2:84004614-84004633 | Msa0431880:CDS | 45.0% |
| CACTCTCCTCTCTTCATTGA+AGG | + | chr3_2:84004647-84004666 | None:intergenic | 45.0% | |
| CTTCAATGAAGAGAGGAGAG+TGG | - | chr3_2:84004645-84004664 | Msa0431880:CDS | 45.0% | |
| ! | CCAGTGTTGTTAATCACGGA+TGG | + | chr3_2:84004799-84004818 | None:intergenic | 45.0% |
| CCATCCGTGATTAACAACAC+TGG | - | chr3_2:84004796-84004815 | Msa0431880:intron | 45.0% | |
| AGGACATCACTAAGACAGCA+TGG | + | chr3_2:84004857-84004876 | None:intergenic | 45.0% | |
| AGGATGGAAGACACCATACA+AGG | + | chr3_2:84004877-84004896 | None:intergenic | 45.0% | |
| TGGTGGGACATGTTTGTGTT+AGG | - | chr3_2:84004979-84004998 | Msa0431880:intron | 45.0% | |
| TGATAGCAAGCACACGTACA+AGG | - | chr3_2:84005491-84005510 | Msa0431880:intron | 45.0% | |
| GATAGCAAGCACACGTACAA+GGG | - | chr3_2:84005492-84005511 | Msa0431880:intron | 45.0% | |
| !! | CGTACAAGGGTCTTTTTCAC+TGG | - | chr3_2:84005505-84005524 | Msa0431880:intron | 45.0% |
| ATGGCTGAAATTTGCAGAGG+GGG | - | chr3_2:84005624-84005643 | Msa0431880:intron | 45.0% | |
| ! | CTCTGGAGGTAAATGTGATG+GGG | - | chr3_2:84005656-84005675 | Msa0431880:intron | 45.0% |
| ! | GGAAGTATGTTAGGTGGTGT+TGG | - | chr3_2:84005771-84005790 | Msa0431880:five_prime_UTR | 45.0% |
| GAAGCTTTGCGTTGCTGGAA+GGG | + | chr3_2:84003085-84003104 | None:intergenic | 50.0% | |
| TGAAGCTTTGCGTTGCTGGA+AGG | + | chr3_2:84003086-84003105 | None:intergenic | 50.0% | |
| AGCTTGAAGCTTTGCGTTGC+TGG | + | chr3_2:84003090-84003109 | None:intergenic | 50.0% | |
| CACTGCCCCTTCAGATTCAT+AGG | + | chr3_2:84004012-84004031 | None:intergenic | 50.0% | |
| TGAGCTTCTTGCTGCTAAGC+AGG | - | chr3_2:84004035-84004054 | Msa0431880:intron | 50.0% | |
| GCAGCGTATGGAATCATCTG+TGG | - | chr3_2:84004329-84004348 | Msa0431880:intron | 50.0% | |
| AGAGGAGAGTGGAGTTCAGA+TGG | - | chr3_2:84004656-84004675 | Msa0431880:CDS | 50.0% | |
| !! | ATATCGGCTCTGCAGTGTTG+TGG | - | chr3_2:84004703-84004722 | Msa0431880:intron | 50.0% |
| !! | CGTGTGCTTGCTATCAACTG+TGG | + | chr3_2:84005487-84005506 | None:intergenic | 50.0% |
| TGGCTGAAATTTGCAGAGGG+GGG | - | chr3_2:84005625-84005644 | Msa0431880:intron | 50.0% | |
| GTTGCTGGAAGGGAGATGAG+CGG | + | chr3_2:84003075-84003094 | None:intergenic | 55.0% | |
| GCTTCTTGCTGCTAAGCAGG+TGG | - | chr3_2:84004038-84004057 | Msa0431880:intron | 55.0% | |
| TGAAATTTGCAGAGGGGGGC+AGG | - | chr3_2:84005629-84005648 | Msa0431880:intron | 55.0% | |
| GAAATTTGCAGAGGGGGGCA+GGG | - | chr3_2:84005630-84005649 | Msa0431880:intron | 55.0% | |
| AAATTTGCAGAGGGGGGCAG+GGG | - | chr3_2:84005631-84005650 | Msa0431880:intron | 55.0% | |
| GTGGTCGAACGCTGGTGGAA+CGG | + | chr3_2:84003053-84003072 | None:intergenic | 60.0% | |
| GTCGAACGCTGGTGGAACGG+CGG | + | chr3_2:84003050-84003069 | None:intergenic | 65.0% | |
| GATGAGCGGTGGTCGAACGC+TGG | + | chr3_2:84003061-84003080 | None:intergenic | 65.0% | |
| GCTGGAAGGGAGATGAGCGG+TGG | + | chr3_2:84003072-84003091 | None:intergenic | 65.0% | |
| CTGGTGGAACGGCGGTGGAG+CGG | + | chr3_2:84003042-84003061 | None:intergenic | 70.0% | |
| GAACGCTGGTGGAACGGCGG+TGG | + | chr3_2:84003047-84003066 | None:intergenic | 70.0% | |
| GAGCGGTGGTCGAACGCTGG+TGG | + | chr3_2:84003058-84003077 | None:intergenic | 70.0% | |
| AGAGGGGGGCAGGGGAACTC+TGG | - | chr3_2:84005639-84005658 | Msa0431880:intron | 70.0% | |
| GGGGGGCAGGGGAACTCTGG+AGG | - | chr3_2:84005642-84005661 | Msa0431880:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 84002972 | 84005990 | 84002972 | ID=Msa0431880;Name=Msa0431880 |
| chr3_2 | mRNA | 84002972 | 84005990 | 84002972 | ID=Msa0431880-mRNA-1;Parent=Msa0431880;Name=Msa0431880-mRNA-1;_AED=0.27;_eAED=0.27;_QI=272|0.42|0.62|0.87|0.57|0.62|8|229|223 |
| chr3_2 | exon | 84002972 | 84003321 | 84002972 | ID=Msa0431880-mRNA-1:exon:23685;Parent=Msa0431880-mRNA-1 |
| chr3_2 | exon | 84003457 | 84003576 | 84003457 | ID=Msa0431880-mRNA-1:exon:23684;Parent=Msa0431880-mRNA-1 |
| chr3_2 | exon | 84003663 | 84003859 | 84003663 | ID=Msa0431880-mRNA-1:exon:23683;Parent=Msa0431880-mRNA-1 |
| chr3_2 | exon | 84004561 | 84004683 | 84004561 | ID=Msa0431880-mRNA-1:exon:23682;Parent=Msa0431880-mRNA-1 |
| chr3_2 | exon | 84004903 | 84004959 | 84004903 | ID=Msa0431880-mRNA-1:exon:23681;Parent=Msa0431880-mRNA-1 |
| chr3_2 | exon | 84005405 | 84005427 | 84005405 | ID=Msa0431880-mRNA-1:exon:23680;Parent=Msa0431880-mRNA-1 |
| chr3_2 | exon | 84005537 | 84005587 | 84005537 | ID=Msa0431880-mRNA-1:exon:23679;Parent=Msa0431880-mRNA-1 |
| chr3_2 | exon | 84005739 | 84005990 | 84005739 | ID=Msa0431880-mRNA-1:exon:23678;Parent=Msa0431880-mRNA-1 |
| chr3_2 | five_prime_UTR | 84005739 | 84005990 | 84005739 | ID=Msa0431880-mRNA-1:five_prime_utr;Parent=Msa0431880-mRNA-1 |
| chr3_2 | five_prime_UTR | 84005568 | 84005587 | 84005568 | ID=Msa0431880-mRNA-1:five_prime_utr;Parent=Msa0431880-mRNA-1 |
| chr3_2 | CDS | 84005537 | 84005567 | 84005537 | ID=Msa0431880-mRNA-1:cds;Parent=Msa0431880-mRNA-1 |
| chr3_2 | CDS | 84005405 | 84005427 | 84005405 | ID=Msa0431880-mRNA-1:cds;Parent=Msa0431880-mRNA-1 |
| chr3_2 | CDS | 84004903 | 84004959 | 84004903 | ID=Msa0431880-mRNA-1:cds;Parent=Msa0431880-mRNA-1 |
| chr3_2 | CDS | 84004561 | 84004683 | 84004561 | ID=Msa0431880-mRNA-1:cds;Parent=Msa0431880-mRNA-1 |
| chr3_2 | CDS | 84003663 | 84003859 | 84003663 | ID=Msa0431880-mRNA-1:cds;Parent=Msa0431880-mRNA-1 |
| chr3_2 | CDS | 84003457 | 84003576 | 84003457 | ID=Msa0431880-mRNA-1:cds;Parent=Msa0431880-mRNA-1 |
| chr3_2 | CDS | 84003201 | 84003321 | 84003201 | ID=Msa0431880-mRNA-1:cds;Parent=Msa0431880-mRNA-1 |
| chr3_2 | three_prime_UTR | 84002972 | 84003200 | 84002972 | ID=Msa0431880-mRNA-1:three_prime_utr;Parent=Msa0431880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
