AlfalfaGEDB | Msa1322860

M. sativa cultivar zhongmu-4 / Msa1322860

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1322860	XP_003628184.1	96.815	157	5	0	1	157	1	157	1.28e-107	313

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1322860	sp\|Q941R6\|MLP31_ARATH	31.579	152	101	3	3	152	20	170	4.32e-20	84.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1322860	B7FMF6	96.815	157	5	0	1	157	1	157	6.09e-108	313

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1322860	-0.843028	1.802256e-58	-8.615850e-47
Msa0001780	Msa1322860	0.857401	1.674113e-62	-8.615850e-47
Msa0007080	Msa1322860	0.802330	5.905787e-49	-8.615850e-47
Msa0011720	Msa1322860	0.804150	2.480136e-49	-8.615850e-47
Msa0012060	Msa1322860	0.829580	4.753848e-55	-8.615850e-47
Msa0015390	Msa1322860	0.826694	2.356406e-54	-8.615850e-47
Msa0016670	Msa1322860	0.806555	7.771556e-50	-8.615850e-47
Msa0017510	Msa1322860	0.889624	2.049730e-73	-8.615850e-47
Msa0024210	Msa1322860	-0.807280	5.458719e-50	-8.615850e-47
Msa0028640	Msa1322860	0.844709	6.389987e-59	-8.615850e-47

Showing 1 to 10 of 763 entries

Previous1 2 3 4 5…77Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1322860	MtrunA17_Chr8g0355641	96.815	157	5	0	1	157	1	157	1.17e-111	313
Msa1322860	MtrunA17_Chr8g0355741	75.641	156	38	0	1	156	1	156	3.17e-86	249
Msa1322860	MtrunA17_Chr8g0355721	70.513	156	45	1	1	156	1	155	9.16e-83	240
Msa1322860	MtrunA17_Chr8g0355781	71.523	151	43	0	1	151	1	151	1.10e-81	238
Msa1322860	MtrunA17_Chr8g0355661	69.231	156	47	1	1	156	1	155	3.05e-79	231
Msa1322860	MtrunA17_Chr8g0355761	68.874	151	47	0	1	151	1	151	6.27e-78	228
Msa1322860	MtrunA17_Chr8g0355811	66.026	156	52	1	1	156	1	155	5.62e-77	226
Msa1322860	MtrunA17_Chr8g0355821	66.452	155	51	1	1	155	1	154	6.40e-75	221
Msa1322860	MtrunA17_Chr8g0355791	63.462	156	56	1	1	156	1	155	3.67e-71	211
Msa1322860	MtrunA17_Chr8g0355801	63.462	156	56	1	1	156	1	155	6.27e-71	210

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1322860	AT5G28010.1	32.895	152	99	3	3	152	15	165	1.25e-22	88.6
Msa1322860	AT5G28010.2	32.895	152	99	3	3	152	15	165	1.25e-22	88.6
Msa1322860	AT1G70830.5	32.237	152	100	3	3	152	22	172	7.46e-22	86.7
Msa1322860	AT1G70830.3	32.237	152	100	3	3	152	22	172	1.55e-21	86.7
Msa1322860	AT1G70840.1	31.579	152	101	3	3	152	20	170	4.39e-21	84.7
Msa1322860	AT1G70830.2	32.237	152	100	3	3	152	22	172	4.44e-21	86.7
Msa1322860	AT1G70830.1	32.237	152	100	3	3	152	22	172	1.29e-20	86.7
Msa1322860	AT1G70830.1	30.921	152	102	3	3	152	184	334	4.03e-19	82.4
Msa1322860	AT1G70890.1	30.921	152	102	3	3	152	7	157	2.32e-20	82.4
Msa1322860	AT1G70830.4	30.921	152	102	3	3	152	137	287	1.91e-19	82.8

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

Find 43 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGTCCACAAGATCTT+CGG	0.479675	8_4:-30372727	Msa1322860:CDS
AAACATTGGACTCATGTCCG+AGG	0.703337	8_4:-30373825	Msa1322860:intron
AAAGAGAAGAAAGAAAGAAA+GGG	0.450377	8_4:+30374038	None:intergenic
AACGACTTATAGTGAAATAG+AGG	0.480422	8_4:+30371933	None:intergenic
AATGGAATGGCTTAATGCAT+GGG	0.552317	8_4:-30372477	Msa1322860:three_prime_UTR
ACTCCCCTATATCTATTTAA+AGG	0.290742	8_4:-30372179	Msa1322860:three_prime_UTR
ACTCTGATTCAGTTAAACAT+TGG	0.550009	8_4:-30373839	Msa1322860:CDS
AGAAATAAGTAGTAATGGAA+TGG	0.530981	8_4:-30372490	Msa1322860:three_prime_UTR
AGAAATTGATGAGCACTATA+AGG	0.468901	8_4:-30372701	Msa1322860:CDS
AGCGACCTTTAAATAGATAT+AGG	0.386450	8_4:+30372174	None:intergenic

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGAGAAGAAAGAAAGAA+AGG	+	chr8_4:30371955-30371974	None:intergenic	30.0%
ACTCTGATTCAGTTAAACAT+TGG	-	chr8_4:30372150-30372169	Msa1322860:three_prime_UTR	30.0%
GATATATATAGCAAGAGTGA+TGG	-	chr8_4:30372622-30372641	Msa1322860:CDS	30.0%
AGAAATTGATGAGCACTATA+AGG	-	chr8_4:30373288-30373307	Msa1322860:intron	30.0%
CATCATTGAAGTGATTGATA+AGG	-	chr8_4:30373321-30373340	Msa1322860:intron	30.0%
GTGTTTGTGTCTTCAATAAA+TGG	-	chr8_4:30373645-30373664	Msa1322860:intron	30.0%
ACTCCCCTATATCTATTTAA+AGG	-	chr8_4:30373810-30373829	Msa1322860:intron	30.0%
CGACCTTTAAATAGATATAG+GGG	+	chr8_4:30373816-30373835	None:intergenic	30.0%
GCGACCTTTAAATAGATATA+GGG	+	chr8_4:30373817-30373836	None:intergenic	30.0%
AGCGACCTTTAAATAGATAT+AGG	+	chr8_4:30373818-30373837	None:intergenic	30.0%

Showing 1 to 10 of 176 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	30371944	30374067	30371944	ID=Msa1322860;Name=Msa1322860
chr8_4	mRNA	30371944	30374067	30371944	ID=Msa1322860-mRNA-1;Parent=Msa1322860;Name=Msa1322860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55\|1\|1\|1\|1\|1\|2\|575\|157
chr8_4	exon	30371944	30372805	30371944	ID=Msa1322860-mRNA-1:exon:10108;Parent=Msa1322860-mRNA-1
chr8_4	exon	30373826	30374067	30373826	ID=Msa1322860-mRNA-1:exon:10107;Parent=Msa1322860-mRNA-1
chr8_4	five_prime_UTR	30374013	30374067	30374013	ID=Msa1322860-mRNA-1:five_prime_utr;Parent=Msa1322860-mRNA-1
chr8_4	CDS	30373826	30374012	30373826	ID=Msa1322860-mRNA-1:cds;Parent=Msa1322860-mRNA-1
chr8_4	CDS	30372519	30372805	30372519	ID=Msa1322860-mRNA-1:cds;Parent=Msa1322860-mRNA-1
chr8_4	three_prime_UTR	30371944	30372518	30371944	ID=Msa1322860-mRNA-1:three_prime_utr;Parent=Msa1322860-mRNA-1

Gene Sequence

>Msa1322860

ATGGTGCTTGCTGGTAAACTTAGCACTGAAATTGGGATCAAAGCATCCTCTGACAAGTTCTTCAAACTATTCGCATCAAATATTCACGAACTGCAAAACATTTGTGAAAGTGTTCATGAAACCAAGCTGCATCAAGGTGATGAATGGCATCACTCTGATTCAGTTAAACATTGGACTCATGTCCGAGAGGGCAAGGTATACACATGTCATGAGAGTTTCGAAGAAATTGATGAAAAGAACAAAAAAATCGTCCACAAGATCTTCGGTGAAGAAATTGATGAGCACTATAAGGTCTTTAAGCTCATCATTGAAGTGATTGATAAGGCTGATGGCACTACTGCAGTTAAATGGACTGTTGAATATGAGAAGATCAATGAAGATGTTGAACCTCCAAATAGTTGGATGGAATACCTTAGCAAATGCACTCGAGACATTGATGCTCATCTTGTCAAGCAAGCAAAGGTTGCTCCATAA

Protein sequence

>Msa1322860

MVLAGKLSTEIGIKASSDKFFKLFASNIHELQNICESVHETKLHQGDEWHHSDSVKHWTHVREGKVYTCHESFEEIDEKNKKIVHKIFGEEIDEHYKVFKLIIEVIDKADGTTAVKWTVEYEKINEDVEPPNSWMEYLSKCTRDIDAHLVKQAKVAP*