AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1322860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322860 MtrunA17_Chr8g0355641 96.815 157 5 0 1 157 1 157 1.17e-111 313
Msa1322860 MtrunA17_Chr8g0355741 75.641 156 38 0 1 156 1 156 3.17e-86 249
Msa1322860 MtrunA17_Chr8g0355721 70.513 156 45 1 1 156 1 155 9.16e-83 240
Msa1322860 MtrunA17_Chr8g0355781 71.523 151 43 0 1 151 1 151 1.10e-81 238
Msa1322860 MtrunA17_Chr8g0355661 69.231 156 47 1 1 156 1 155 3.05e-79 231
Msa1322860 MtrunA17_Chr8g0355761 68.874 151 47 0 1 151 1 151 6.27e-78 228
Msa1322860 MtrunA17_Chr8g0355811 66.026 156 52 1 1 156 1 155 5.62e-77 226
Msa1322860 MtrunA17_Chr8g0355821 66.452 155 51 1 1 155 1 154 6.40e-75 221
Msa1322860 MtrunA17_Chr8g0355791 63.462 156 56 1 1 156 1 155 3.67e-71 211
Msa1322860 MtrunA17_Chr8g0355801 63.462 156 56 1 1 156 1 155 6.27e-71 210
Msa1322860 MtrunA17_Chr8g0355771 62.821 156 57 1 1 156 1 155 3.66e-70 208
Msa1322860 MtrunA17_Chr1g0160371 42.208 154 86 2 1 152 1 153 6.52e-38 127
Msa1322860 MtrunA17_Chr1g0160381 39.610 154 90 2 1 152 5 157 2.83e-36 122
Msa1322860 MtrunA17_Chr8g0339261 32.667 150 98 3 6 154 8 155 5.19e-26 96.7
Msa1322860 MtrunA17_Chr1g0160351 46.739 92 47 1 63 152 3 94 2.16e-22 85.5
Msa1322860 MtrunA17_Chr1g0160391 32.692 156 97 4 1 149 1 155 1.17e-21 85.5
Msa1322860 MtrunA17_Chr1g0160801 34.694 147 87 5 7 151 7 146 6.34e-21 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322860 AT5G28010.1 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1322860 AT5G28010.2 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1322860 AT1G70830.5 32.237 152 100 3 3 152 22 172 7.46e-22 86.7
Msa1322860 AT1G70830.3 32.237 152 100 3 3 152 22 172 1.55e-21 86.7
Msa1322860 AT1G70840.1 31.579 152 101 3 3 152 20 170 4.39e-21 84.7
Msa1322860 AT1G70830.2 32.237 152 100 3 3 152 22 172 4.44e-21 86.7
Msa1322860 AT1G70830.1 32.237 152 100 3 3 152 22 172 1.29e-20 86.7
Msa1322860 AT1G70830.1 30.921 152 102 3 3 152 184 334 4.03e-19 82.4
Msa1322860 AT1G70890.1 30.921 152 102 3 3 152 7 157 2.32e-20 82.4
Msa1322860 AT1G70830.4 30.921 152 102 3 3 152 137 287 1.91e-19 82.8
Msa1322860 AT1G70850.2 30.667 150 101 3 3 150 9 157 4.38e-19 80.9
Msa1322860 AT1G70850.3 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1322860 AT1G70850.3 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1322860 AT1G70850.1 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1322860 AT1G70850.1 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1322860 AT1G23120.1 28.105 153 105 3 1 153 1 148 1.99e-18 77.0
Msa1322860 AT1G23120.2 28.758 153 102 4 3 153 51 198 1.17e-17 76.3
Msa1322860 AT1G23130.1 27.152 151 108 2 3 152 10 159 6.07e-17 73.6
Msa1322860 AT5G28000.1 28.947 152 105 3 3 152 13 163 1.68e-16 72.4
Msa1322860 AT1G70870.1 32.450 151 89 4 1 151 1 138 1.73e-16 72.0
Msa1322860 AT4G23670.1 29.605 152 104 3 1 151 1 150 6.06e-16 70.9
Msa1322860 AT1G70880.1 25.658 152 110 3 3 152 8 158 3.24e-15 68.9
Msa1322860 AT1G24020.1 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1322860 AT1G24020.2 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1322860 AT2G01520.1 27.632 152 107 3 1 151 1 150 1.41e-14 67.4
Msa1322860 AT1G14930.1 26.974 152 108 3 1 151 1 150 6.82e-14 65.5
Msa1322860 AT2G01530.1 28.289 152 106 3 1 151 1 150 1.73e-13 64.3
Msa1322860 AT1G35260.1 27.517 149 98 4 7 150 6 149 6.52e-13 62.8
Msa1322860 AT1G35310.1 26.761 142 101 3 13 153 12 151 9.94e-13 62.4
Msa1322860 AT4G14060.1 26.974 152 108 3 1 151 1 150 1.28e-12 62.0
Msa1322860 AT4G23680.1 25.658 152 110 3 1 151 1 150 2.61e-12 61.2
Msa1322860 AT1G30990.1 27.815 151 105 4 1 150 1 148 1.22e-11 59.7
Msa1322860 AT1G14940.1 26.490 151 108 3 1 150 1 149 1.45e-11 59.3

Find 43 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTATGTTTCTTGGAAATT+TGG 0.163222 8_4:-30372229 Msa1322860:three_prime_UTR
TACTTATTTCTTATGACTTA+TGG 0.173467 8_4:+30372502 None:intergenic
ATTTAAAGGTCGCTCATATT+TGG 0.220038 8_4:-30372165 Msa1322860:three_prime_UTR
GGTAAACTTAGCACTGAAAT+TGG 0.239596 8_4:-30373978 Msa1322860:CDS
TCATGTTTGATTATGTTTCT+TGG 0.260153 8_4:-30372237 Msa1322860:three_prime_UTR
AGGTATTCCATCCAACTATT+TGG 0.260874 8_4:+30372580 None:intergenic
GTGTTTGTGTCTTCAATAAA+TGG 0.262059 8_4:-30372344 Msa1322860:three_prime_UTR
ACTCCCCTATATCTATTTAA+AGG 0.290742 8_4:-30372179 Msa1322860:three_prime_UTR
ATGGCACTACTGCAGTTAAA+TGG 0.307509 8_4:-30372642 Msa1322860:CDS
GGCATATTGCATATGCATAT+TGG 0.310006 8_4:-30372414 Msa1322860:three_prime_UTR
GAATGTTATATTCATAGTTT+TGG 0.318064 8_4:-30372265 Msa1322860:three_prime_UTR
GCGACCTTTAAATAGATATA+GGG 0.340264 8_4:+30372175 None:intergenic
GAAAGAGAAGAAAGAAAGAA+AGG 0.382578 8_4:+30374037 None:intergenic
AGCGACCTTTAAATAGATAT+AGG 0.386450 8_4:+30372174 None:intergenic
ATTCGCTCATGAATATTCAT+TGG 0.397354 8_4:+30372050 None:intergenic
TTGGCAACAGATGAAGTAAT+CGG 0.408439 8_4:-30372210 Msa1322860:three_prime_UTR
TTCATCACCTTGATGCAGCT+TGG 0.437287 8_4:+30373869 None:intergenic
GTAAACTTAGCACTGAAATT+GGG 0.446714 8_4:-30373977 Msa1322860:CDS
AAAGAGAAGAAAGAAAGAAA+GGG 0.450377 8_4:+30374038 None:intergenic
AGAAATTGATGAGCACTATA+AGG 0.468901 8_4:-30372701 Msa1322860:CDS
AAAATCGTCCACAAGATCTT+CGG 0.479675 8_4:-30372727 Msa1322860:CDS
AACGACTTATAGTGAAATAG+AGG 0.480422 8_4:+30371933 None:intergenic
TATTCCATCCAACTATTTGG+AGG 0.505271 8_4:+30372583 None:intergenic
AGCTGCATCAAGGTGATGAA+TGG 0.510022 8_4:-30373866 Msa1322860:CDS
TTTCTTCACCGAAGATCTTG+TGG 0.512241 8_4:+30372719 None:intergenic
TCATAAGAAATAAGTAGTAA+TGG 0.515556 8_4:-30372495 Msa1322860:three_prime_UTR
CATCATTGAAGTGATTGATA+AGG 0.521648 8_4:-30372668 Msa1322860:CDS
TAATGGAATGGCTTAATGCA+TGG 0.530715 8_4:-30372478 Msa1322860:three_prime_UTR
AGAAATAAGTAGTAATGGAA+TGG 0.530981 8_4:-30372490 Msa1322860:three_prime_UTR
ATGTTGAACCTCCAAATAGT+TGG 0.544310 8_4:-30372591 Msa1322860:CDS
ACTCTGATTCAGTTAAACAT+TGG 0.550009 8_4:-30373839 Msa1322860:CDS
CGATTTCACAACAGAGGGCA+AGG 0.552186 8_4:-30372797 Msa1322860:intron
AATGGAATGGCTTAATGCAT+GGG 0.552317 8_4:-30372477 Msa1322860:three_prime_UTR
CATGAAACCAAGCTGCATCA+AGG 0.562710 8_4:-30373876 Msa1322860:CDS
GAAAAGTGATGACGACTCAA+AGG 0.581488 8_4:-30372019 Msa1322860:three_prime_UTR
CGACCTTTAAATAGATATAG+GGG 0.601199 8_4:+30372176 None:intergenic
TGAACCTCCAAATAGTTGGA+TGG 0.602941 8_4:-30372587 Msa1322860:CDS
TGTCTCGAGTGCATTTGCTA+AGG 0.617854 8_4:+30372560 None:intergenic
TAGTTTGAAGAACTTGTCAG+AGG 0.640528 8_4:+30373944 None:intergenic
TCATCTTGTCAAGCAAGCAA+AGG 0.651550 8_4:-30372530 Msa1322860:CDS
ATGGAATGGCTTAATGCATG+GGG 0.652110 8_4:-30372476 Msa1322860:three_prime_UTR
GAAGTGATTGATAAGGCTGA+TGG 0.663192 8_4:-30372661 Msa1322860:CDS
AAACATTGGACTCATGTCCG+AGG 0.703337 8_4:-30373825 Msa1322860:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTACAATTTTTTTTTT+TGG - chr8_4:30372997-30373016 Msa1322860:intron 10.0%
!!! TGTTTACAATTTTTTTTTTT+GGG - chr8_4:30372998-30373017 Msa1322860:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG + chr8_4:30373163-30373182 None:intergenic 10.0%
!!! TTGTTTACAATTTTTTTTTT+TGG - chr8_4:30372997-30373016 Msa1322860:intron 10.0%
!!! TGTTTACAATTTTTTTTTTT+GGG - chr8_4:30372998-30373017 Msa1322860:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG + chr8_4:30373163-30373182 None:intergenic 10.0%
!!! TTAGTTTTTCTTTTCAAAAA+TGG - chr8_4:30371980-30371999 Msa1322860:three_prime_UTR 15.0%
!! ATTAGAAATATAATTTACCT+CGG + chr8_4:30372184-30372203 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG - chr8_4:30372404-30372423 Msa1322860:three_prime_UTR 15.0%
!! ACCATTAAATTAAAATTAGA+TGG - chr8_4:30372674-30372693 Msa1322860:CDS 15.0%
!!! AGATGAATATTTTAATTGAA+CGG - chr8_4:30372767-30372786 Msa1322860:CDS 15.0%
!! ATCATCATGATATATAAAAT+TGG - chr8_4:30372884-30372903 Msa1322860:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG + chr8_4:30372956-30372975 None:intergenic 15.0%
!!! GTTTACAATTTTTTTTTTTG+GGG - chr8_4:30372999-30373018 Msa1322860:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG + chr8_4:30373096-30373115 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG - chr8_4:30373156-30373175 Msa1322860:intron 15.0%
!!! TTAGTTTTTCTTTTCAAAAA+TGG - chr8_4:30371980-30371999 Msa1322860:three_prime_UTR 15.0%
!! ATTAGAAATATAATTTACCT+CGG + chr8_4:30372184-30372203 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG - chr8_4:30372404-30372423 Msa1322860:three_prime_UTR 15.0%
!! ACCATTAAATTAAAATTAGA+TGG - chr8_4:30372674-30372693 Msa1322860:CDS 15.0%
!!! AGATGAATATTTTAATTGAA+CGG - chr8_4:30372767-30372786 Msa1322860:CDS 15.0%
!! ATCATCATGATATATAAAAT+TGG - chr8_4:30372884-30372903 Msa1322860:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG + chr8_4:30372956-30372975 None:intergenic 15.0%
!!! GTTTACAATTTTTTTTTTTG+GGG - chr8_4:30372999-30373018 Msa1322860:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG + chr8_4:30373096-30373115 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG - chr8_4:30373156-30373175 Msa1322860:intron 15.0%
!!! GACATCTTTAAATTTCATTT+TGG - chr8_4:30372334-30372353 Msa1322860:three_prime_UTR 20.0%
!! CAATAACATATTGCAAAATT+TGG - chr8_4:30372403-30372422 Msa1322860:three_prime_UTR 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG + chr8_4:30372456-30372475 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG - chr8_4:30372455-30372474 Msa1322860:three_prime_UTR 20.0%
!! GATCTAAGTATAAGATATAA+AGG - chr8_4:30372491-30372510 Msa1322860:three_prime_UTR 20.0%
!! ATTCAAGATCAATATCAATA+TGG + chr8_4:30372536-30372555 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG - chr8_4:30372594-30372613 Msa1322860:CDS 20.0%
!! TTCCATTATTAATTGTTGAT+TGG + chr8_4:30372599-30372618 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG + chr8_4:30372678-30372697 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG - chr8_4:30372896-30372915 Msa1322860:intron 20.0%
!!! TACTTATTTCTTATGACTTA+TGG + chr8_4:30373490-30373509 None:intergenic 20.0%
!! TCATAAGAAATAAGTAGTAA+TGG - chr8_4:30373494-30373513 Msa1322860:intron 20.0%
!!! TTTTTATGGAATAAATGTGT+CGG - chr8_4:30373615-30373634 Msa1322860:intron 20.0%
!!! GAATGTTATATTCATAGTTT+TGG - chr8_4:30373724-30373743 Msa1322860:intron 20.0%
!!! GACATCTTTAAATTTCATTT+TGG - chr8_4:30372334-30372353 Msa1322860:three_prime_UTR 20.0%
!! CAATAACATATTGCAAAATT+TGG - chr8_4:30372403-30372422 Msa1322860:three_prime_UTR 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG + chr8_4:30372456-30372475 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG - chr8_4:30372455-30372474 Msa1322860:three_prime_UTR 20.0%
!! GATCTAAGTATAAGATATAA+AGG - chr8_4:30372491-30372510 Msa1322860:three_prime_UTR 20.0%
!! ATTCAAGATCAATATCAATA+TGG + chr8_4:30372536-30372555 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG - chr8_4:30372594-30372613 Msa1322860:CDS 20.0%
!! TTCCATTATTAATTGTTGAT+TGG + chr8_4:30372599-30372618 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG + chr8_4:30372678-30372697 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG - chr8_4:30372896-30372915 Msa1322860:intron 20.0%
!!! TACTTATTTCTTATGACTTA+TGG + chr8_4:30373490-30373509 None:intergenic 20.0%
!! TCATAAGAAATAAGTAGTAA+TGG - chr8_4:30373494-30373513 Msa1322860:intron 20.0%
!!! TTTTTATGGAATAAATGTGT+CGG - chr8_4:30373615-30373634 Msa1322860:intron 20.0%
!!! GAATGTTATATTCATAGTTT+TGG - chr8_4:30373724-30373743 Msa1322860:intron 20.0%
! AAAGAGAAGAAAGAAAGAAA+GGG + chr8_4:30371954-30371973 None:intergenic 25.0%
! ATTTCTAATAACACTAACAC+TGG - chr8_4:30372195-30372214 Msa1322860:three_prime_UTR 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG - chr8_4:30372260-30372279 Msa1322860:three_prime_UTR 25.0%
! ATGTACAAGTACAACTATAA+AGG - chr8_4:30372796-30372815 Msa1322860:intron 25.0%
!! AGAAATAAGTAGTAATGGAA+TGG - chr8_4:30373499-30373518 Msa1322860:intron 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG - chr8_4:30373554-30373573 Msa1322860:intron 25.0%
!!! GTTTTCATCTTTCGTTTTTA+TGG - chr8_4:30373601-30373620 Msa1322860:intron 25.0%
!!! AATGGTTTTTTTGTGCTTTT+TGG - chr8_4:30373663-30373682 Msa1322860:intron 25.0%
! TCATGTTTGATTATGTTTCT+TGG - chr8_4:30373752-30373771 Msa1322860:intron 25.0%
! GATTATGTTTCTTGGAAATT+TGG - chr8_4:30373760-30373779 Msa1322860:intron 25.0%
! AAAGAGAAGAAAGAAAGAAA+GGG + chr8_4:30371954-30371973 None:intergenic 25.0%
! ATTTCTAATAACACTAACAC+TGG - chr8_4:30372195-30372214 Msa1322860:three_prime_UTR 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG - chr8_4:30372260-30372279 Msa1322860:three_prime_UTR 25.0%
! ATGTACAAGTACAACTATAA+AGG - chr8_4:30372796-30372815 Msa1322860:intron 25.0%
!! AGAAATAAGTAGTAATGGAA+TGG - chr8_4:30373499-30373518 Msa1322860:intron 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG - chr8_4:30373554-30373573 Msa1322860:intron 25.0%
!!! GTTTTCATCTTTCGTTTTTA+TGG - chr8_4:30373601-30373620 Msa1322860:intron 25.0%
!!! AATGGTTTTTTTGTGCTTTT+TGG - chr8_4:30373663-30373682 Msa1322860:intron 25.0%
! TCATGTTTGATTATGTTTCT+TGG - chr8_4:30373752-30373771 Msa1322860:intron 25.0%
! GATTATGTTTCTTGGAAATT+TGG - chr8_4:30373760-30373779 Msa1322860:intron 25.0%
GAAAGAGAAGAAAGAAAGAA+AGG + chr8_4:30371955-30371974 None:intergenic 30.0%
! GTAAACTTAGCACTGAAATT+GGG - chr8_4:30372012-30372031 Msa1322860:three_prime_UTR 30.0%
ACTCTGATTCAGTTAAACAT+TGG - chr8_4:30372150-30372169 Msa1322860:three_prime_UTR 30.0%
!! ACTGGATTTATGTGCTATTT+CGG - chr8_4:30372213-30372232 Msa1322860:three_prime_UTR 30.0%
GATATATATAGCAAGAGTGA+TGG - chr8_4:30372622-30372641 Msa1322860:CDS 30.0%
!! AAATTGGTTGATTTGATGGT+TGG - chr8_4:30372900-30372919 Msa1322860:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG - chr8_4:30372907-30372926 Msa1322860:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG + chr8_4:30372934-30372953 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG + chr8_4:30372948-30372967 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG - chr8_4:30373288-30373307 Msa1322860:intron 30.0%
CATCATTGAAGTGATTGATA+AGG - chr8_4:30373321-30373340 Msa1322860:intron 30.0%
GTGTTTGTGTCTTCAATAAA+TGG - chr8_4:30373645-30373664 Msa1322860:intron 30.0%
ACTCCCCTATATCTATTTAA+AGG - chr8_4:30373810-30373829 Msa1322860:intron 30.0%
CGACCTTTAAATAGATATAG+GGG + chr8_4:30373816-30373835 None:intergenic 30.0%
GCGACCTTTAAATAGATATA+GGG + chr8_4:30373817-30373836 None:intergenic 30.0%
AGCGACCTTTAAATAGATAT+AGG + chr8_4:30373818-30373837 None:intergenic 30.0%
ATTTAAAGGTCGCTCATATT+TGG - chr8_4:30373824-30373843 Msa1322860:intron 30.0%
ATTCGCTCATGAATATTCAT+TGG + chr8_4:30373942-30373961 None:intergenic 30.0%
GAAAGAGAAGAAAGAAAGAA+AGG + chr8_4:30371955-30371974 None:intergenic 30.0%
! GTAAACTTAGCACTGAAATT+GGG - chr8_4:30372012-30372031 Msa1322860:three_prime_UTR 30.0%
ACTCTGATTCAGTTAAACAT+TGG - chr8_4:30372150-30372169 Msa1322860:three_prime_UTR 30.0%
!! ACTGGATTTATGTGCTATTT+CGG - chr8_4:30372213-30372232 Msa1322860:three_prime_UTR 30.0%
GATATATATAGCAAGAGTGA+TGG - chr8_4:30372622-30372641 Msa1322860:CDS 30.0%
!! AAATTGGTTGATTTGATGGT+TGG - chr8_4:30372900-30372919 Msa1322860:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG - chr8_4:30372907-30372926 Msa1322860:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG + chr8_4:30372934-30372953 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG + chr8_4:30372948-30372967 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG - chr8_4:30373288-30373307 Msa1322860:intron 30.0%
CATCATTGAAGTGATTGATA+AGG - chr8_4:30373321-30373340 Msa1322860:intron 30.0%
GTGTTTGTGTCTTCAATAAA+TGG - chr8_4:30373645-30373664 Msa1322860:intron 30.0%
ACTCCCCTATATCTATTTAA+AGG - chr8_4:30373810-30373829 Msa1322860:intron 30.0%
CGACCTTTAAATAGATATAG+GGG + chr8_4:30373816-30373835 None:intergenic 30.0%
GCGACCTTTAAATAGATATA+GGG + chr8_4:30373817-30373836 None:intergenic 30.0%
AGCGACCTTTAAATAGATAT+AGG + chr8_4:30373818-30373837 None:intergenic 30.0%
ATTTAAAGGTCGCTCATATT+TGG - chr8_4:30373824-30373843 Msa1322860:intron 30.0%
ATTCGCTCATGAATATTCAT+TGG + chr8_4:30373942-30373961 None:intergenic 30.0%
! TTTTCAAAAATGGTGCTTGC+TGG - chr8_4:30371990-30372009 Msa1322860:three_prime_UTR 35.0%
! GGTAAACTTAGCACTGAAAT+TGG - chr8_4:30372011-30372030 Msa1322860:three_prime_UTR 35.0%
TAGTTTGAAGAACTTGTCAG+AGG + chr8_4:30372048-30372067 None:intergenic 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG - chr8_4:30372629-30372648 Msa1322860:CDS 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG - chr8_4:30372906-30372925 Msa1322860:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG - chr8_4:30372908-30372927 Msa1322860:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG - chr8_4:30373262-30373281 Msa1322860:intron 35.0%
ATGTTGAACCTCCAAATAGT+TGG - chr8_4:30373398-30373417 Msa1322860:intron 35.0%
TATTCCATCCAACTATTTGG+AGG + chr8_4:30373409-30373428 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG + chr8_4:30373412-30373431 None:intergenic 35.0%
TAATGGAATGGCTTAATGCA+TGG - chr8_4:30373511-30373530 Msa1322860:intron 35.0%
AATGGAATGGCTTAATGCAT+GGG - chr8_4:30373512-30373531 Msa1322860:intron 35.0%
GGCATATTGCATATGCATAT+TGG - chr8_4:30373575-30373594 Msa1322860:intron 35.0%
TTGGCAACAGATGAAGTAAT+CGG - chr8_4:30373779-30373798 Msa1322860:intron 35.0%
! TTTTCAAAAATGGTGCTTGC+TGG - chr8_4:30371990-30372009 Msa1322860:three_prime_UTR 35.0%
! GGTAAACTTAGCACTGAAAT+TGG - chr8_4:30372011-30372030 Msa1322860:three_prime_UTR 35.0%
TAGTTTGAAGAACTTGTCAG+AGG + chr8_4:30372048-30372067 None:intergenic 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG - chr8_4:30372629-30372648 Msa1322860:CDS 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG - chr8_4:30372906-30372925 Msa1322860:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG - chr8_4:30372908-30372927 Msa1322860:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG - chr8_4:30373262-30373281 Msa1322860:intron 35.0%
ATGTTGAACCTCCAAATAGT+TGG - chr8_4:30373398-30373417 Msa1322860:intron 35.0%
TATTCCATCCAACTATTTGG+AGG + chr8_4:30373409-30373428 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG + chr8_4:30373412-30373431 None:intergenic 35.0%
TAATGGAATGGCTTAATGCA+TGG - chr8_4:30373511-30373530 Msa1322860:intron 35.0%
AATGGAATGGCTTAATGCAT+GGG - chr8_4:30373512-30373531 Msa1322860:intron 35.0%
GGCATATTGCATATGCATAT+TGG - chr8_4:30373575-30373594 Msa1322860:intron 35.0%
TTGGCAACAGATGAAGTAAT+CGG - chr8_4:30373779-30373798 Msa1322860:intron 35.0%
TACCTTCGATTTCACAACAG+AGG - chr8_4:30373186-30373205 Msa1322860:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG - chr8_4:30373187-30373206 Msa1322860:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG + chr8_4:30373273-30373292 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG - chr8_4:30373328-30373347 Msa1322860:intron 40.0%
ATGGCACTACTGCAGTTAAA+TGG - chr8_4:30373347-30373366 Msa1322860:intron 40.0%
TGAACCTCCAAATAGTTGGA+TGG - chr8_4:30373402-30373421 Msa1322860:intron 40.0%
TCATCTTGTCAAGCAAGCAA+AGG - chr8_4:30373459-30373478 Msa1322860:intron 40.0%
ATGGAATGGCTTAATGCATG+GGG - chr8_4:30373513-30373532 Msa1322860:intron 40.0%
! GAAAAGTGATGACGACTCAA+AGG - chr8_4:30373970-30373989 Msa1322860:CDS 40.0%
TACCTTCGATTTCACAACAG+AGG - chr8_4:30373186-30373205 Msa1322860:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG - chr8_4:30373187-30373206 Msa1322860:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG + chr8_4:30373273-30373292 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG - chr8_4:30373328-30373347 Msa1322860:intron 40.0%
ATGGCACTACTGCAGTTAAA+TGG - chr8_4:30373347-30373366 Msa1322860:intron 40.0%
TGAACCTCCAAATAGTTGGA+TGG - chr8_4:30373402-30373421 Msa1322860:intron 40.0%
TCATCTTGTCAAGCAAGCAA+AGG - chr8_4:30373459-30373478 Msa1322860:intron 40.0%
ATGGAATGGCTTAATGCATG+GGG - chr8_4:30373513-30373532 Msa1322860:intron 40.0%
! GAAAAGTGATGACGACTCAA+AGG - chr8_4:30373970-30373989 Msa1322860:CDS 40.0%
CATGAAACCAAGCTGCATCA+AGG - chr8_4:30372113-30372132 Msa1322860:three_prime_UTR 45.0%
TTCATCACCTTGATGCAGCT+TGG + chr8_4:30372123-30372142 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG - chr8_4:30372123-30372142 Msa1322860:three_prime_UTR 45.0%
AAACATTGGACTCATGTCCG+AGG - chr8_4:30372164-30372183 Msa1322860:three_prime_UTR 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG + chr8_4:30373432-30373451 None:intergenic 45.0%
CATGAAACCAAGCTGCATCA+AGG - chr8_4:30372113-30372132 Msa1322860:three_prime_UTR 45.0%
TTCATCACCTTGATGCAGCT+TGG + chr8_4:30372123-30372142 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG - chr8_4:30372123-30372142 Msa1322860:three_prime_UTR 45.0%
AAACATTGGACTCATGTCCG+AGG - chr8_4:30372164-30372183 Msa1322860:three_prime_UTR 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG + chr8_4:30373432-30373451 None:intergenic 45.0%
!!! AATAATAATTTAAAACTATT+TGG + chr8_4:30372960-30372979 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG - chr8_4:30373067-30373086 Msa1322860:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG - chr8_4:30373068-30373087 Msa1322860:intron 5.0%
!!! AATAATAATTTAAAACTATT+TGG + chr8_4:30372960-30372979 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG - chr8_4:30373067-30373086 Msa1322860:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG - chr8_4:30373068-30373087 Msa1322860:intron 5.0%
GCCCTCTGTTGTGAAATCGA+AGG + chr8_4:30373191-30373210 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG - chr8_4:30373192-30373211 Msa1322860:intron 50.0%
GCCCTCTGTTGTGAAATCGA+AGG + chr8_4:30373191-30373210 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG - chr8_4:30373192-30373211 Msa1322860:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 30371944 30374067 30371944 ID=Msa1322860;Name=Msa1322860
chr8_4 mRNA 30371944 30374067 30371944 ID=Msa1322860-mRNA-1;Parent=Msa1322860;Name=Msa1322860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|2|575|157
chr8_4 exon 30371944 30372805 30371944 ID=Msa1322860-mRNA-1:exon:10108;Parent=Msa1322860-mRNA-1
chr8_4 exon 30373826 30374067 30373826 ID=Msa1322860-mRNA-1:exon:10107;Parent=Msa1322860-mRNA-1
chr8_4 five_prime_UTR 30374013 30374067 30374013 ID=Msa1322860-mRNA-1:five_prime_utr;Parent=Msa1322860-mRNA-1
chr8_4 CDS 30373826 30374012 30373826 ID=Msa1322860-mRNA-1:cds;Parent=Msa1322860-mRNA-1
chr8_4 CDS 30372519 30372805 30372519 ID=Msa1322860-mRNA-1:cds;Parent=Msa1322860-mRNA-1
chr8_4 three_prime_UTR 30371944 30372518 30371944 ID=Msa1322860-mRNA-1:three_prime_utr;Parent=Msa1322860-mRNA-1
Gene Sequence

>Msa1322860

ATGGTGCTTGCTGGTAAACTTAGCACTGAAATTGGGATCAAAGCATCCTCTGACAAGTTCTTCAAACTATTCGCATCAAATATTCACGAACTGCAAAACATTTGTGAAAGTGTTCATGAAACCAAGCTGCATCAAGGTGATGAATGGCATCACTCTGATTCAGTTAAACATTGGACTCATGTCCGAGAGGGCAAGGTATACACATGTCATGAGAGTTTCGAAGAAATTGATGAAAAGAACAAAAAAATCGTCCACAAGATCTTCGGTGAAGAAATTGATGAGCACTATAAGGTCTTTAAGCTCATCATTGAAGTGATTGATAAGGCTGATGGCACTACTGCAGTTAAATGGACTGTTGAATATGAGAAGATCAATGAAGATGTTGAACCTCCAAATAGTTGGATGGAATACCTTAGCAAATGCACTCGAGACATTGATGCTCATCTTGTCAAGCAAGCAAAGGTTGCTCCATAA

Protein sequence

>Msa1322860

MVLAGKLSTEIGIKASSDKFFKLFASNIHELQNICESVHETKLHQGDEWHHSDSVKHWTHVREGKVYTCHESFEEIDEKNKKIVHKIFGEEIDEHYKVFKLIIEVIDKADGTTAVKWTVEYEKINEDVEPPNSWMEYLSKCTRDIDAHLVKQAKVAP*