Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374330 | GAU42143.1 | 86.364 | 374 | 13 | 4 | 3 | 374 | 2 | 339 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374330 | sp|Q9ZTR1|SPDS1_PEA | 84.677 | 372 | 18 | 3 | 3 | 374 | 2 | 334 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374330 | H2EIY6 | 91.711 | 374 | 1 | 1 | 1 | 374 | 1 | 344 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0721190 | Msa1374330 | 0.927497 | 1.082634e-91 | -8.615850e-47 |
| Msa0763580 | Msa1374330 | 0.888097 | 7.982579e-73 | -8.615850e-47 |
| Msa0842920 | Msa1374330 | 0.964987 | 5.039208e-124 | -8.615850e-47 |
| Msa0937550 | Msa1374330 | 0.804773 | 1.839364e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374330 | MtrunA17_Chr5g0413701 | 89.840 | 374 | 7 | 2 | 1 | 374 | 1 | 343 | 0.0 | 674 |
| Msa1374330 | MtrunA17_Chr8g0365071 | 74.670 | 379 | 51 | 4 | 3 | 374 | 2 | 342 | 0.0 | 564 |
| Msa1374330 | MtrunA17_Chr3g0117881 | 59.202 | 326 | 99 | 2 | 53 | 374 | 41 | 336 | 4.50e-145 | 414 |
| Msa1374330 | MtrunA17_Chr3g0126551 | 59.669 | 362 | 89 | 6 | 34 | 369 | 23 | 353 | 2.13e-142 | 408 |
| Msa1374330 | MtrunA17_Chr1g0158851 | 60.360 | 333 | 87 | 5 | 50 | 369 | 57 | 357 | 2.60e-134 | 388 |
| Msa1374330 | MtrunA17_Chr1g0150851 | 30.592 | 304 | 162 | 11 | 34 | 327 | 21 | 285 | 7.21e-34 | 128 |
| Msa1374330 | MtrunA17_Chr5g0394371 | 32.422 | 256 | 129 | 7 | 73 | 320 | 42 | 261 | 1.21e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374330 | AT1G23820.1 | 73.278 | 363 | 64 | 3 | 12 | 374 | 5 | 334 | 0.0 | 540 |
| Msa1374330 | AT1G70310.1 | 72.877 | 365 | 61 | 4 | 14 | 374 | 10 | 340 | 0.0 | 529 |
| Msa1374330 | AT1G23820.2 | 72.241 | 299 | 51 | 2 | 12 | 310 | 49 | 315 | 1.97e-153 | 435 |
| Msa1374330 | AT5G53120.1 | 59.341 | 364 | 91 | 5 | 34 | 371 | 23 | 355 | 8.70e-142 | 407 |
| Msa1374330 | AT5G53120.4 | 59.341 | 364 | 91 | 5 | 34 | 371 | 23 | 355 | 8.70e-142 | 407 |
| Msa1374330 | AT5G53120.2 | 59.341 | 364 | 91 | 5 | 34 | 371 | 23 | 355 | 8.70e-142 | 407 |
| Msa1374330 | AT5G53120.5 | 59.341 | 364 | 91 | 5 | 34 | 371 | 23 | 355 | 8.70e-142 | 407 |
| Msa1374330 | AT5G53120.3 | 59.341 | 364 | 91 | 5 | 34 | 371 | 23 | 355 | 8.70e-142 | 407 |
| Msa1374330 | AT5G53120.7 | 59.341 | 364 | 91 | 5 | 34 | 371 | 40 | 372 | 1.92e-141 | 407 |
| Msa1374330 | AT5G53120.6 | 53.197 | 391 | 99 | 7 | 34 | 371 | 23 | 382 | 5.54e-138 | 398 |
| Msa1374330 | AT5G19530.2 | 28.803 | 309 | 169 | 9 | 70 | 373 | 40 | 302 | 1.00e-34 | 130 |
| Msa1374330 | AT5G19530.1 | 28.803 | 309 | 169 | 9 | 70 | 373 | 47 | 309 | 1.12e-34 | 130 |
Find 98 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAATCACTTCACTGTTT+AGG | 0.197894 | tig0019485:+53764 | Msa1374330:CDS |
| CTTAATCACTTCACTGTTTA+GGG | 0.208260 | tig0019485:+53765 | Msa1374330:CDS |
| CCATTTGGTTGAGGTTCTTT+TGG | 0.239220 | tig0019485:-50471 | None:intergenic |
| CTCAAACATTATTGACAATA+TGG | 0.252304 | tig0019485:+55387 | Msa1374330:three_prime_UTR |
| TCAAGGAAAATCTGATTATC+AGG | 0.273203 | tig0019485:+52033 | Msa1374330:CDS |
| ATATGGCAAGGTTCTTGTTT+TGG | 0.280455 | tig0019485:+52165 | Msa1374330:CDS |
| CTCAATTCCAAACCCCAAAA+AGG | 0.285078 | tig0019485:+52258 | Msa1374330:CDS |
| TCAAAACCTACTGCTATATC+AGG | 0.285866 | tig0019485:-53682 | None:intergenic |
| TGGGATTGAAAGGGTGCTTA+TGG | 0.300718 | tig0019485:+55210 | Msa1374330:three_prime_UTR |
| GGTTTATCTTCTGTTATTCC+TGG | 0.301003 | tig0019485:+50492 | Msa1374330:CDS |
| TTCTTCTCTTTGCCTCTTCA+AGG | 0.305491 | tig0019485:-50400 | None:intergenic |
| AGTTGATGGATTCAGTTCTT+AGG | 0.318848 | tig0019485:+55357 | Msa1374330:three_prime_UTR |
| TGGATCTATCGATCAATAAA+AGG | 0.320193 | tig0019485:-55251 | None:intergenic |
| TCTGCTGCTGCCGCCATGTT+TGG | 0.323278 | tig0019485:-50345 | None:intergenic |
| TCAGGATGTTATGGTCTTCC+AGG | 0.350984 | tig0019485:+52051 | Msa1374330:CDS |
| TTGGTCATTGGTGGAGGAGA+TGG | 0.355582 | tig0019485:+52983 | Msa1374330:CDS |
| TTTAGAAGCAATTGCTCTCT+TGG | 0.357834 | tig0019485:-55167 | None:intergenic |
| ACTGCATCATAAGTTCCTTC+TGG | 0.359338 | tig0019485:-53850 | None:intergenic |
| TGAAAATGAGTTGTAGTTGA+TGG | 0.372784 | tig0019485:+55343 | Msa1374330:three_prime_UTR |
| ATCTGATTATCAGGATGTTA+TGG | 0.375563 | tig0019485:+52042 | Msa1374330:CDS |
| CCGCCATGTTTGGTTTGGTT+TGG | 0.381041 | tig0019485:-50335 | None:intergenic |
| TGCTGCCGCCATGTTTGGTT+TGG | 0.385140 | tig0019485:-50340 | None:intergenic |
| TATCTTCTGTTATTCCTGGC+TGG | 0.386803 | tig0019485:+50496 | Msa1374330:CDS |
| TGACAGAGCCTTTGAATACT+TGG | 0.386990 | tig0019485:-54134 | None:intergenic |
| TTGCTCAACTGAGGGGCCTT+CGG | 0.394265 | tig0019485:+54743 | Msa1374330:CDS |
| TTTATTCCACGGTTCATTGA+TGG | 0.394520 | tig0019485:-55279 | None:intergenic |
| GTGGATTCATCTGATCCTAT+TGG | 0.395416 | tig0019485:+53877 | Msa1374330:CDS |
| GGTTTGTCTTTCAATGATCT+AGG | 0.414313 | tig0019485:+53805 | Msa1374330:CDS |
| GTTTGCAATGAAAATGAAGT+AGG | 0.420379 | tig0019485:-50313 | None:intergenic |
| ATAACAGAAGATAAACCATT+TGG | 0.430526 | tig0019485:-50486 | None:intergenic |
| GTACTCAGGCGGAAAGTATA+TGG | 0.432205 | tig0019485:+54070 | Msa1374330:CDS |
| GTGGAAAAGATTCTGTTTCA+AGG | 0.447500 | tig0019485:+52016 | Msa1374330:CDS |
| TTCGGTCGATTTCAAGCATC+CGG | 0.461644 | tig0019485:+54761 | Msa1374330:CDS |
| TGGCTATCATTCTCATCAAT+AGG | 0.466884 | tig0019485:-54789 | None:intergenic |
| TCAGAGTTGTAAAATTTCAA+TGG | 0.468115 | tig0019485:-54825 | None:intergenic |
| TGAGTACACACAACACCTCC+TGG | 0.469052 | tig0019485:-54054 | None:intergenic |
| AAAACGAACCAGGCCACATT+GGG | 0.470461 | tig0019485:-50533 | None:intergenic |
| GTTGCAAGGGCTCTTCGTCC+AGG | 0.475620 | tig0019485:+54036 | Msa1374330:CDS |
| TTTATGCTTTGCTCAACTGA+GGG | 0.479096 | tig0019485:+54735 | Msa1374330:CDS |
| TCTTCTCTTTGCCTCTTCAA+GGG | 0.480585 | tig0019485:-50399 | None:intergenic |
| GAAGATAAACCATTTGGTTG+AGG | 0.481438 | tig0019485:-50480 | None:intergenic |
| CCAAAAGAACCTCAACCAAA+TGG | 0.482653 | tig0019485:+50471 | Msa1374330:CDS |
| AACTTATGATGCAGTTATTG+TGG | 0.485527 | tig0019485:+53858 | Msa1374330:CDS |
| GTCATTGGTGGAGGAGATGG+AGG | 0.490380 | tig0019485:+52986 | Msa1374330:CDS |
| ATTGCTCTCTTGGCAAAAGA+TGG | 0.491734 | tig0019485:-55157 | None:intergenic |
| CCACGTGTGACACTTAATAT+CGG | 0.495007 | tig0019485:+53709 | Msa1374330:CDS |
| TCAATGGTCTTCCTGCATGC+TGG | 0.497270 | tig0019485:-54809 | None:intergenic |
| AAGGCTCTGTCAACTATGCT+TGG | 0.497721 | tig0019485:+54145 | Msa1374330:CDS |
| GAAATTAGCCCAATGTGGCC+TGG | 0.504538 | tig0019485:+50525 | Msa1374330:CDS |
| TTTGCAATGAAAATGAAGTA+GGG | 0.513083 | tig0019485:-50312 | None:intergenic |
| TTCTCATCAATAGGATTCAC+CGG | 0.513261 | tig0019485:-54780 | None:intergenic |
| AGGGGAGGCTCACTCATTGA+AGG | 0.518756 | tig0019485:+51994 | Msa1374330:intron |
| GGGAAGTCACTTGGTTCGTG+TGG | 0.520522 | tig0019485:-50292 | None:intergenic |
| TTATTCCACGGTTCATTGAT+GGG | 0.525894 | tig0019485:-55278 | None:intergenic |
| GCAAACAGAAAGCTGCTGAA+TGG | 0.526418 | tig0019485:-55135 | None:intergenic |
| AGAACACACCTTGGGTATGT+AGG | 0.534999 | tig0019485:-54177 | None:intergenic |
| AGGAGATGGAGGAGTCCTGC+GGG | 0.539206 | tig0019485:+52997 | Msa1374330:CDS |
| GAAGATGAGTGATCATCTCT+TGG | 0.542698 | tig0019485:-52228 | None:intergenic |
| GAAAACGAACCAGGCCACAT+TGG | 0.547905 | tig0019485:-50534 | None:intergenic |
| TGAAGCACTACTTTATTCCA+CGG | 0.553365 | tig0019485:-55290 | None:intergenic |
| ACGGTTCATTGATGGGCAGA+TGG | 0.560703 | tig0019485:-55271 | None:intergenic |
| AAACCAAACCAAACCAAACA+TGG | 0.561849 | tig0019485:+50332 | Msa1374330:exon |
| CTAATTTCAGAGAACCAGCC+AGG | 0.562845 | tig0019485:-50510 | None:intergenic |
| GGTCATTCAGCTCACAGAAA+GGG | 0.566371 | tig0019485:+52192 | Msa1374330:CDS |
| GGGTCATTCAGCTCACAGAA+AGG | 0.568875 | tig0019485:+52191 | Msa1374330:CDS |
| GAGAATGATAGCCAGCATGC+AGG | 0.575153 | tig0019485:+54798 | Msa1374330:CDS |
| GTAGTCAGCAACATATGGCA+AGG | 0.575663 | tig0019485:+52153 | Msa1374330:intron |
| CCTCTTCAAGGGAAAATCTG+TGG | 0.576006 | tig0019485:-50388 | None:intergenic |
| ATGAGTGATCATCTCTTGGT+AGG | 0.576912 | tig0019485:-52224 | None:intergenic |
| AAGGGAAAATCTGTGGACTC+AGG | 0.578610 | tig0019485:-50381 | None:intergenic |
| GGAAGTCACTTGGTTCGTGT+GGG | 0.581514 | tig0019485:-50291 | None:intergenic |
| GAGGAGATGGAGGAGTCCTG+CGG | 0.584086 | tig0019485:+52996 | Msa1374330:CDS |
| GCTTCATATGCATATCATTG+AGG | 0.585111 | tig0019485:+54092 | Msa1374330:CDS |
| AGGAGGTGTTGTGTGTACTC+AGG | 0.589734 | tig0019485:+54056 | Msa1374330:CDS |
| CATTTGTGAAATAGACAAGA+TGG | 0.590675 | tig0019485:+53054 | Msa1374330:CDS |
| CAAAACCTACTGCTATATCA+GGG | 0.592364 | tig0019485:-53681 | None:intergenic |
| AATTGTCGCCAAGTATTCAA+AGG | 0.594618 | tig0019485:+54126 | Msa1374330:CDS |
| GGGTTTGGAATTGAGCAAAG+TGG | 0.595482 | tig0019485:-52250 | None:intergenic |
| TTATGCTTTGCTCAACTGAG+GGG | 0.601606 | tig0019485:+54736 | Msa1374330:CDS |
| TGTCAACTATGCTTGGACCA+CGG | 0.611981 | tig0019485:+54152 | Msa1374330:CDS |
| GGAGGCTCACTCATTGAAGG+TGG | 0.624884 | tig0019485:+51997 | Msa1374330:CDS |
| AATGAAGTAGGGAAGTCACT+TGG | 0.628106 | tig0019485:-50301 | None:intergenic |
| GTGACACTTAATATCGGCGA+TGG | 0.629074 | tig0019485:+53715 | Msa1374330:CDS |
| AGTGAAGTGATTAAGAAACA+TGG | 0.638704 | tig0019485:-53757 | None:intergenic |
| AGGTGTTGTGTGTACTCAGG+CGG | 0.646480 | tig0019485:+54059 | Msa1374330:CDS |
| ATCTGTGGACTCAGGAAGTG+TGG | 0.650713 | tig0019485:-50373 | None:intergenic |
| CCACGGTTCCTACATACCCA+AGG | 0.659865 | tig0019485:+54169 | Msa1374330:CDS |
| ATCTGCCCATCAATGAACCG+TGG | 0.662440 | tig0019485:+55273 | Msa1374330:three_prime_UTR |
| GCAAGGGCTCTTCGTCCAGG+AGG | 0.667733 | tig0019485:+54039 | Msa1374330:CDS |
| AATGGCGTGAAACTTCCCGC+AGG | 0.668044 | tig0019485:-53012 | None:intergenic |
| GGATGCTTGAAATCGACCGA+AGG | 0.670797 | tig0019485:-54759 | None:intergenic |
| GTTTCAGAGACACCGTTGTG+AGG | 0.681469 | tig0019485:-50444 | None:intergenic |
| CCGATATTAAGTGTCACACG+TGG | 0.687158 | tig0019485:-53709 | None:intergenic |
| GCATATCATTGAGGACATCG+TGG | 0.705537 | tig0019485:+54101 | Msa1374330:CDS |
| TCTCTGAAATTAGCCCAATG+TGG | 0.705739 | tig0019485:+50520 | Msa1374330:CDS |
| CCTTGGGTATGTAGGAACCG+TGG | 0.729877 | tig0019485:-54169 | None:intergenic |
| CCAAACCAAACCAAACATGG+CGG | 0.741503 | tig0019485:+50335 | Msa1374330:exon |
| GAAGATCAACTACCTCACAA+CGG | 0.763149 | tig0019485:+50432 | Msa1374330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATATTTTTTTTTTA+AGG | + | tig0019485:50836-50855 | Msa1374330:intron | 0.0% |
| !!! | ATATTTTTTTTTTAAGGTTT+TGG | + | tig0019485:50842-50861 | Msa1374330:intron | 10.0% |
| !!! | TATTTTTTTTTTAAGGTTTT+GGG | + | tig0019485:50843-50862 | Msa1374330:intron | 10.0% |
| !!! | TTTTGATTATATGTAATATA+TGG | + | tig0019485:51006-51025 | Msa1374330:intron | 10.0% |
| !!! | ACTTTTATTTTTTAAAATCA+CGG | + | tig0019485:51472-51491 | Msa1374330:intron | 10.0% |
| !!! | GATATGATTATTTTTTATTA+TGG | + | tig0019485:54672-54691 | Msa1374330:intron | 10.0% |
| !!! | ACACAAAAATATTGAATTTT+CGG | - | tig0019485:50585-50604 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGATGAAACTT+AGG | + | tig0019485:50639-50658 | Msa1374330:intron | 15.0% |
| !!! | ATTTTTTTTTTAAGGTTTTG+GGG | + | tig0019485:50844-50863 | Msa1374330:intron | 15.0% |
| !! | TTATAATAATGACAAATCAT+GGG | - | tig0019485:51771-51790 | None:intergenic | 15.0% |
| !! | ATTATAATAATGACAAATCA+TGG | - | tig0019485:51772-51791 | None:intergenic | 15.0% |
| !! | ACATATACTAAATTATTAGA+GGG | - | tig0019485:52301-52320 | None:intergenic | 15.0% |
| !!! | TTTTAATCATTATATGTAGA+TGG | + | tig0019485:52404-52423 | Msa1374330:intron | 15.0% |
| !! | TAAAGACCATAAAAATTATA+AGG | - | tig0019485:53921-53940 | None:intergenic | 15.0% |
| !!! | TATAATTTTTATGGTCTTTA+CGG | + | tig0019485:53921-53940 | Msa1374330:intron | 15.0% |
| !!! | TTTTTATTTTTTTGTTTCAG+TGG | + | tig0019485:54702-54721 | Msa1374330:intron | 15.0% |
| !!! | TTTTATTTTTTTGTTTCAGT+GGG | + | tig0019485:54703-54722 | Msa1374330:intron | 15.0% |
| !!! | ATTTTTTAGAATCTAAAACA+AGG | + | tig0019485:54976-54995 | Msa1374330:intron | 15.0% |
| !!! | TTTTTTAGAATCTAAAACAA+GGG | + | tig0019485:54977-54996 | Msa1374330:intron | 15.0% |
| !!! | GAATTTTAACTTCAAAAAAT+AGG | - | tig0019485:55446-55465 | None:intergenic | 15.0% |
| !!! | CACAAAAATATTGAATTTTC+GGG | - | tig0019485:50584-50603 | None:intergenic | 20.0% |
| !!! | TAGGTTTAATTGTTGTTTAT+TGG | + | tig0019485:50658-50677 | Msa1374330:intron | 20.0% |
| !!! | AGGTTTAATTGTTGTTTATT+GGG | + | tig0019485:50659-50678 | Msa1374330:intron | 20.0% |
| !!! | TTGATTATGATTGTGTTTTT+AGG | + | tig0019485:50789-50808 | Msa1374330:intron | 20.0% |
| !!! | CAAAATTTTGACTAAAATTC+TGG | + | tig0019485:51107-51126 | Msa1374330:intron | 20.0% |
| !! | GTGAAAATAAATTTGAGAAA+TGG | - | tig0019485:51247-51266 | None:intergenic | 20.0% |
| !! | CAAGTAAAAACAATAACAAA+TGG | - | tig0019485:51290-51309 | None:intergenic | 20.0% |
| !!! | TATTGTTTTTACTTGCATAT+TGG | + | tig0019485:51295-51314 | Msa1374330:intron | 20.0% |
| !!! | AAAAGGTAATTGAATTTTCA+GGG | - | tig0019485:51635-51654 | None:intergenic | 20.0% |
| !!! | AAAGTATCAAATACCTTTTT+GGG | - | tig0019485:52274-52293 | None:intergenic | 20.0% |
| !! | GACATATACTAAATTATTAG+AGG | - | tig0019485:52302-52321 | None:intergenic | 20.0% |
| !! | AATTCAGGATAATAATTGTA+AGG | + | tig0019485:52370-52389 | Msa1374330:intron | 20.0% |
| !! | ACTTAAACGTAAATAATCTA+CGG | - | tig0019485:52565-52584 | None:intergenic | 20.0% |
| !! | TATAAATGTAAGTGTTAAGT+TGG | - | tig0019485:53187-53206 | None:intergenic | 20.0% |
| !!! | AATAAGCTAAAAACAGTTTT+TGG | + | tig0019485:53347-53366 | Msa1374330:intron | 20.0% |
| !!! | TTTTTTTTTTTCCTTCAAGT+TGG | + | tig0019485:53494-53513 | Msa1374330:intron | 20.0% |
| !!! | TTTTTTTTTTCCTTCAAGTT+GGG | + | tig0019485:53495-53514 | Msa1374330:intron | 20.0% |
| !!! | TGTTGTTAATTTTAAGATTG+CGG | + | tig0019485:54274-54293 | Msa1374330:intron | 20.0% |
| !! | AAAAATGGAGAGTTAATATT+TGG | - | tig0019485:55098-55117 | None:intergenic | 20.0% |
| !!! | AAATATTAACTCTCCATTTT+TGG | + | tig0019485:55097-55116 | Msa1374330:intron | 20.0% |
| ! | TTTGCAATGAAAATGAAGTA+GGG | - | tig0019485:50315-50334 | None:intergenic | 25.0% |
| ! | ATAACAGAAGATAAACCATT+TGG | - | tig0019485:50489-50508 | None:intergenic | 25.0% |
| !!! | AATATTGAATTTTCGGGAAA+AGG | - | tig0019485:50578-50597 | None:intergenic | 25.0% |
| ! | TTATGCTGATAAATGAACAA+GGG | - | tig0019485:50608-50627 | None:intergenic | 25.0% |
| ! | TTTATGCTGATAAATGAACA+AGG | - | tig0019485:50609-50628 | None:intergenic | 25.0% |
| ! | TCCCTAAATTCAAGAAAAAA+GGG | - | tig0019485:50877-50896 | None:intergenic | 25.0% |
| ! | TTCCCTAAATTCAAGAAAAA+AGG | - | tig0019485:50878-50897 | None:intergenic | 25.0% |
| !! | ATTAATTTTGCTCTTCAAGA+TGG | + | tig0019485:50939-50958 | Msa1374330:intron | 25.0% |
| !! | ATTTTCATCAATCAAGGATT+TGG | + | tig0019485:51033-51052 | Msa1374330:intron | 25.0% |
| !! | TTTTCATCAATCAAGGATTT+GGG | + | tig0019485:51034-51053 | Msa1374330:intron | 25.0% |
| ! | TAGCAGTACTATTGTAATAT+AGG | - | tig0019485:51082-51101 | None:intergenic | 25.0% |
| ! | GTAGATAGTAGAAATTTGAT+TGG | + | tig0019485:51179-51198 | Msa1374330:intron | 25.0% |
| ! | TACTTGCATATTGGATTTAA+TGG | + | tig0019485:51304-51323 | Msa1374330:intron | 25.0% |
| ! | AGAAACATTGAATCTCATAT+TGG | + | tig0019485:51380-51399 | Msa1374330:intron | 25.0% |
| ! | TAAGAACATGTGATTAATGA+TGG | - | tig0019485:51540-51559 | None:intergenic | 25.0% |
| !! | CAAAAGGTAATTGAATTTTC+AGG | - | tig0019485:51636-51655 | None:intergenic | 25.0% |
| !! | ATTTGGTATGGTTTATGTTT+TGG | + | tig0019485:51815-51834 | Msa1374330:intron | 25.0% |
| ! | TTTCTAATAAGACTTTGCTT+TGG | - | tig0019485:51920-51939 | None:intergenic | 25.0% |
| !! | AAGTATCAAATACCTTTTTG+GGG | - | tig0019485:52273-52292 | None:intergenic | 25.0% |
| !!! | CAAAGTATCAAATACCTTTT+TGG | - | tig0019485:52275-52294 | None:intergenic | 25.0% |
| !! | ATTGACTTTCTTATGTAGTT+TGG | + | tig0019485:52340-52359 | Msa1374330:intron | 25.0% |
| ! | TAGTTTGGCAAAAAAAATTC+AGG | + | tig0019485:52355-52374 | Msa1374330:intron | 25.0% |
| ! | AATGTCTATATTGAATCTCT+TGG | + | tig0019485:52451-52470 | Msa1374330:intron | 25.0% |
| ! | GTAGATTATTTACGTTTAAG+TGG | + | tig0019485:52564-52583 | Msa1374330:intron | 25.0% |
| !! | TTCTATTTTCTGTTAGGTTT+TGG | + | tig0019485:52964-52983 | Msa1374330:intron | 25.0% |
| ! | AAAAAAAACACAGCAATAAG+CGG | - | tig0019485:53540-53559 | None:intergenic | 25.0% |
| !! | CTTTGCACAAAATAGATTTT+AGG | - | tig0019485:53580-53599 | None:intergenic | 25.0% |
| ! | TATATCAGGGAAAAATTGTT+TGG | - | tig0019485:53671-53690 | None:intergenic | 25.0% |
| ! | TTCAGATATATCATACCAAT+AGG | - | tig0019485:53895-53914 | None:intergenic | 25.0% |
| !! | GAAACGCCTTATAATTTTTA+TGG | + | tig0019485:53912-53931 | Msa1374330:intron | 25.0% |
| !! | TATAACATGCTTTTCGATTA+GGG | + | tig0019485:54650-54669 | Msa1374330:intron | 25.0% |
| ! | TCAGAGTTGTAAAATTTCAA+TGG | - | tig0019485:54828-54847 | None:intergenic | 25.0% |
| !! | ATTGAAATTTTACAACTCTG+AGG | + | tig0019485:54827-54846 | Msa1374330:CDS | 25.0% |
| ! | ACCATTATGTATTACTGTTA+GGG | - | tig0019485:54955-54974 | None:intergenic | 25.0% |
| ! | AACCATTATGTATTACTGTT+AGG | - | tig0019485:54956-54975 | None:intergenic | 25.0% |
| ! | GTTAATATTTGGAGAAGAAA+AGG | - | tig0019485:55087-55106 | None:intergenic | 25.0% |
| ! | CTGAAATAAAGAACCAAAAA+TGG | - | tig0019485:55113-55132 | None:intergenic | 25.0% |
| !! | TCAAATTGAGAACATTTTCA+TGG | + | tig0019485:55190-55209 | Msa1374330:exon | 25.0% |
| !! | CAAATTGAGAACATTTTCAT+GGG | + | tig0019485:55191-55210 | Msa1374330:exon | 25.0% |
| ! | CTCAAACATTATTGACAATA+TGG | + | tig0019485:55387-55406 | Msa1374330:three_prime_UTR | 25.0% |
| GTTTGCAATGAAAATGAAGT+AGG | - | tig0019485:50316-50335 | None:intergenic | 30.0% | |
| !! | AATTGTTGTTTATTGGGTCA+TGG | + | tig0019485:50665-50684 | Msa1374330:intron | 30.0% |
| !! | TGAAAGTATCAATTTCTCTG+TGG | + | tig0019485:50759-50778 | Msa1374330:intron | 30.0% |
| !!! | AGCCCTTTTTTCTTGAATTT+AGG | + | tig0019485:50872-50891 | Msa1374330:intron | 30.0% |
| !!! | GCCCTTTTTTCTTGAATTTA+GGG | + | tig0019485:50873-50892 | Msa1374330:intron | 30.0% |
| TTGAATCTCATATTGGTCAT+AGG | + | tig0019485:51387-51406 | Msa1374330:intron | 30.0% | |
| TGAATCTCATATTGGTCATA+GGG | + | tig0019485:51388-51407 | Msa1374330:intron | 30.0% | |
| TTAACTCTTTGATCAGTTGT+AGG | + | tig0019485:51683-51702 | Msa1374330:intron | 30.0% | |
| TATATTTCGCTGCAAACATT+TGG | + | tig0019485:51798-51817 | Msa1374330:intron | 30.0% | |
| !!! | CGAGATTTTGGTTTTCTTTA+AGG | + | tig0019485:51877-51896 | Msa1374330:intron | 30.0% |
| !! | GTATTTTTACAAAAGTGTGC+AGG | - | tig0019485:51945-51964 | None:intergenic | 30.0% |
| ! | TGAACTTTGTTGTAATTTGC+AGG | + | tig0019485:51974-51993 | Msa1374330:intron | 30.0% |
| ! | GAACTTTGTTGTAATTTGCA+GGG | + | tig0019485:51975-51994 | Msa1374330:intron | 30.0% |
| ! | AACTTTGTTGTAATTTGCAG+GGG | + | tig0019485:51976-51995 | Msa1374330:intron | 30.0% |
| TCAAGGAAAATCTGATTATC+AGG | + | tig0019485:52033-52052 | Msa1374330:CDS | 30.0% | |
| ATCTGATTATCAGGATGTTA+TGG | + | tig0019485:52042-52061 | Msa1374330:CDS | 30.0% | |
| AACAGAACTAGTACTATGAA+GGG | - | tig0019485:52112-52131 | None:intergenic | 30.0% | |
| AAACAGAACTAGTACTATGA+AGG | - | tig0019485:52113-52132 | None:intergenic | 30.0% | |
| TATTATATGTCGAAGAGAGT+AGG | + | tig0019485:52801-52820 | Msa1374330:intron | 30.0% | |
| ! | CTATCTTTTCTACTGAAGAA+TGG | - | tig0019485:53033-53052 | None:intergenic | 30.0% |
| CATTTGTGAAATAGACAAGA+TGG | + | tig0019485:53054-53073 | Msa1374330:CDS | 30.0% | |
| TGACATACTATCATCTTACT+TGG | + | tig0019485:53146-53165 | Msa1374330:intron | 30.0% | |
| GACATACTATCATCTTACTT+GGG | + | tig0019485:53147-53166 | Msa1374330:intron | 30.0% | |
| CTTATTCTCATAAATTCTCC+AGG | - | tig0019485:53333-53352 | None:intergenic | 30.0% | |
| AAGGAAAAAAAAAAAGCGAG+GGG | - | tig0019485:53489-53508 | None:intergenic | 30.0% | |
| GAAGGAAAAAAAAAAAGCGA+GGG | - | tig0019485:53490-53509 | None:intergenic | 30.0% | |
| TGAAGGAAAAAAAAAAAGCG+AGG | - | tig0019485:53491-53510 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCTTCGTCATG+CGG | + | tig0019485:53554-53573 | Msa1374330:intron | 30.0% |
| AGTGAAGTGATTAAGAAACA+TGG | - | tig0019485:53760-53779 | None:intergenic | 30.0% | |
| TCTTAATCACTTCACTGTTT+AGG | + | tig0019485:53764-53783 | Msa1374330:CDS | 30.0% | |
| CTTAATCACTTCACTGTTTA+GGG | + | tig0019485:53765-53784 | Msa1374330:CDS | 30.0% | |
| ! | AGGGATAACTTTTCTAATGA+TGG | + | tig0019485:53784-53803 | Msa1374330:CDS | 30.0% |
| AACTTATGATGCAGTTATTG+TGG | + | tig0019485:53858-53877 | Msa1374330:CDS | 30.0% | |
| ! | TTTAAGATTGCGGAAAATAG+CGG | + | tig0019485:54284-54303 | Msa1374330:intron | 30.0% |
| ACTATGCTTAAACACTTAAG+TGG | + | tig0019485:54405-54424 | Msa1374330:intron | 30.0% | |
| GTTTCAAATCAACTATCTAG+TGG | - | tig0019485:54493-54512 | None:intergenic | 30.0% | |
| !! | GTTGATTTGAAACTGCAAAA+TGG | + | tig0019485:54500-54519 | Msa1374330:intron | 30.0% |
| TCAATCATCATCAGTCATAA+TGG | + | tig0019485:54529-54548 | Msa1374330:intron | 30.0% | |
| !!! | TCTTATTTTCTGTATCCTCT+TGG | + | tig0019485:54573-54592 | Msa1374330:intron | 30.0% |
| GAATACATAACCAACACAAT+TGG | - | tig0019485:54602-54621 | None:intergenic | 30.0% | |
| ! | CTATAACATGCTTTTCGATT+AGG | + | tig0019485:54649-54668 | Msa1374330:intron | 30.0% |
| !! | GTCATCTTAGAGTTTGTTTT+AGG | - | tig0019485:54930-54949 | None:intergenic | 30.0% |
| ACCCTAACAGTAATACATAA+TGG | + | tig0019485:54951-54970 | Msa1374330:intron | 30.0% | |
| ! | AACATTTTCATGGGATTGAA+AGG | + | tig0019485:55200-55219 | Msa1374330:three_prime_UTR | 30.0% |
| ! | ACATTTTCATGGGATTGAAA+GGG | + | tig0019485:55201-55220 | Msa1374330:three_prime_UTR | 30.0% |
| TGGATCTATCGATCAATAAA+AGG | - | tig0019485:55254-55273 | None:intergenic | 30.0% | |
| TGAAAATGAGTTGTAGTTGA+TGG | + | tig0019485:55343-55362 | Msa1374330:three_prime_UTR | 30.0% | |
| AAACCAAACCAAACCAAACA+TGG | + | tig0019485:50332-50351 | Msa1374330:exon | 35.0% | |
| GAAGATAAACCATTTGGTTG+AGG | - | tig0019485:50483-50502 | None:intergenic | 35.0% | |
| GGTTTATCTTCTGTTATTCC+TGG | + | tig0019485:50492-50511 | Msa1374330:CDS | 35.0% | |
| TTTCGGGAAAAGGAAGAAAA+GGG | - | tig0019485:50568-50587 | None:intergenic | 35.0% | |
| !! | TTTTCGGGAAAAGGAAGAAA+AGG | - | tig0019485:50569-50588 | None:intergenic | 35.0% |
| ! | TTTTGCTCTTCAAGATGGAT+TGG | + | tig0019485:50944-50963 | Msa1374330:intron | 35.0% |
| ! | GGACACATTTTCATCAATCA+AGG | + | tig0019485:51027-51046 | Msa1374330:intron | 35.0% |
| TTTCAGCTTTCAACCTCAAA+AGG | - | tig0019485:51340-51359 | None:intergenic | 35.0% | |
| AATGTTTCTCTCACAAGACA+TGG | - | tig0019485:51369-51388 | None:intergenic | 35.0% | |
| CTGAGCTACTTAAGAACAAA+AGG | - | tig0019485:51652-51671 | None:intergenic | 35.0% | |
| TTTGTTCTTAAGTAGCTCAG+TGG | + | tig0019485:51652-51671 | Msa1374330:intron | 35.0% | |
| AGTTGTAGGTTCTTTCTCAT+TGG | + | tig0019485:51697-51716 | Msa1374330:intron | 35.0% | |
| AATGACAAATCATGGGAACT+GGG | - | tig0019485:51764-51783 | None:intergenic | 35.0% | |
| TAATGACAAATCATGGGAAC+TGG | - | tig0019485:51765-51784 | None:intergenic | 35.0% | |
| TTGGTTGAATATGCATATGC+TGG | + | tig0019485:51834-51853 | Msa1374330:intron | 35.0% | |
| ! | GAAGTAGATCTTCGAGATTT+TGG | + | tig0019485:51865-51884 | Msa1374330:intron | 35.0% |
| GTGGAAAAGATTCTGTTTCA+AGG | + | tig0019485:52016-52035 | Msa1374330:CDS | 35.0% | |
| ACAGAACTAGTACTATGAAG+GGG | - | tig0019485:52111-52130 | None:intergenic | 35.0% | |
| ! | GTTTTGTAGTCAGCAACATA+TGG | + | tig0019485:52148-52167 | Msa1374330:intron | 35.0% |
| !! | ATATGGCAAGGTTCTTGTTT+TGG | + | tig0019485:52165-52184 | Msa1374330:CDS | 35.0% |
| !!! | TCAAATACCTTTTTGGGGTT+TGG | - | tig0019485:52268-52287 | None:intergenic | 35.0% |
| ATATGTAGATGGTTGCTTAG+AGG | + | tig0019485:52415-52434 | Msa1374330:intron | 35.0% | |
| ATGGTTGCTTAGAGGAATTT+GGG | + | tig0019485:52423-52442 | Msa1374330:intron | 35.0% | |
| ATATAAAACAAGTGTGCAGC+AGG | - | tig0019485:52516-52535 | None:intergenic | 35.0% | |
| CTTTAGCACTGTAGCATAAT+GGG | - | tig0019485:52670-52689 | None:intergenic | 35.0% | |
| !! | TGCAGAGTGTTGTCAAATAA+CGG | - | tig0019485:52693-52712 | None:intergenic | 35.0% |
| TATTCGCTATTTGACAACAC+TGG | + | tig0019485:52776-52795 | Msa1374330:intron | 35.0% | |
| ATACAAACCACTCTTGAGAA+TGG | + | tig0019485:52856-52875 | Msa1374330:intron | 35.0% | |
| TGGAATGTTGGATCATTACA+AGG | + | tig0019485:52876-52895 | Msa1374330:intron | 35.0% | |
| TTGAAAAGTTACGCAAGGAA+TGG | - | tig0019485:52911-52930 | None:intergenic | 35.0% | |
| CCTAACAGAAAATAGAAGTG+AGG | - | tig0019485:52961-52980 | None:intergenic | 35.0% | |
| ! | CCTCACTTCTATTTTCTGTT+AGG | + | tig0019485:52958-52977 | Msa1374330:intron | 35.0% |
| !! | TTCTGTTAGGTTTTGGTCAT+TGG | + | tig0019485:52971-52990 | Msa1374330:intron | 35.0% |
| !! | GTTAAGTTGGTTATCCAAAC+AGG | - | tig0019485:53174-53193 | None:intergenic | 35.0% |
| !! | CGTGTTTTTATAAGTTGTCC+TGG | + | tig0019485:53312-53331 | Msa1374330:intron | 35.0% |
| AACTATTTGCCAAGAGTTCA+CGG | - | tig0019485:53391-53410 | None:intergenic | 35.0% | |
| TCTTGGCAAATAGTTTCACA+AGG | + | tig0019485:53396-53415 | Msa1374330:intron | 35.0% | |
| CTTGGCAAATAGTTTCACAA+GGG | + | tig0019485:53397-53416 | Msa1374330:intron | 35.0% | |
| AGGAAAAAAAAAAAGCGAGG+GGG | - | tig0019485:53488-53507 | None:intergenic | 35.0% | |
| !!! | TTTTTTTCCTTCAAGTTGGG+TGG | + | tig0019485:53498-53517 | Msa1374330:intron | 35.0% |
| !!! | TTTTTTCCTTCAAGTTGGGT+GGG | + | tig0019485:53499-53518 | Msa1374330:intron | 35.0% |
| TTGAAGTCTTCTTTCTTTGC+AGG | + | tig0019485:53642-53661 | Msa1374330:intron | 35.0% | |
| ! | TTTTTCCCTGATATAGCAGT+AGG | + | tig0019485:53676-53695 | Msa1374330:CDS | 35.0% |
| CAAAACCTACTGCTATATCA+GGG | - | tig0019485:53684-53703 | None:intergenic | 35.0% | |
| TCAAAACCTACTGCTATATC+AGG | - | tig0019485:53685-53704 | None:intergenic | 35.0% | |
| ! | TGATATAGCAGTAGGTTTTG+AGG | + | tig0019485:53684-53703 | Msa1374330:CDS | 35.0% |
| GGTTTGTCTTTCAATGATCT+AGG | + | tig0019485:53805-53824 | Msa1374330:CDS | 35.0% | |
| ! | TCTAGGAGTTGCATTTTTGA+AGG | + | tig0019485:53822-53841 | Msa1374330:CDS | 35.0% |
| ! | TTTTCAAAAAGCTCTTGAGC+AGG | - | tig0019485:54000-54019 | None:intergenic | 35.0% |
| !!! | TGAAAAGCCCTTTTTTGAGT+CGG | + | tig0019485:54014-54033 | Msa1374330:CDS | 35.0% |
| GCTTCATATGCATATCATTG+AGG | + | tig0019485:54092-54111 | Msa1374330:CDS | 35.0% | |
| AATTGTCGCCAAGTATTCAA+AGG | + | tig0019485:54126-54145 | Msa1374330:CDS | 35.0% | |
| ATTGTGAAAGAACACACCTT+GGG | - | tig0019485:54188-54207 | None:intergenic | 35.0% | |
| AATTGTGAAAGAACACACCT+TGG | - | tig0019485:54189-54208 | None:intergenic | 35.0% | |
| ! | GTGTTTTGCAGAGTGTAAAT+GGG | - | tig0019485:54225-54244 | None:intergenic | 35.0% |
| ! | TGTGTTTTGCAGAGTGTAAA+TGG | - | tig0019485:54226-54245 | None:intergenic | 35.0% |
| AATATGTGGAAAGGATCACA+GGG | - | tig0019485:54250-54269 | None:intergenic | 35.0% | |
| TAATATGTGGAAAGGATCAC+AGG | - | tig0019485:54251-54270 | None:intergenic | 35.0% | |
| CGAAATAGCATATCACAGAA+CGG | + | tig0019485:54364-54383 | Msa1374330:intron | 35.0% | |
| TGATCAGTGTTGTCAAATAG+CGG | - | tig0019485:54439-54458 | None:intergenic | 35.0% | |
| !! | TTTTGTTTCAGTGGGATGAT+TGG | + | tig0019485:54711-54730 | Msa1374330:intron | 35.0% |
| ! | TTTTATGCTTTGCTCAACTG+AGG | + | tig0019485:54734-54753 | Msa1374330:CDS | 35.0% |
| TTTATGCTTTGCTCAACTGA+GGG | + | tig0019485:54735-54754 | Msa1374330:CDS | 35.0% | |
| TTCTCATCAATAGGATTCAC+CGG | - | tig0019485:54783-54802 | None:intergenic | 35.0% | |
| TGGCTATCATTCTCATCAAT+AGG | - | tig0019485:54792-54811 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTAGGCCTCATTA+GGG | - | tig0019485:54919-54938 | None:intergenic | 35.0% |
| !!! | AGTTTGTTTTAGGCCTCATT+AGG | - | tig0019485:54920-54939 | None:intergenic | 35.0% |
| CAAAAACACAGTATGAGTGT+TGG | - | tig0019485:55058-55077 | None:intergenic | 35.0% | |
| TTTAGAAGCAATTGCTCTCT+TGG | - | tig0019485:55170-55189 | None:intergenic | 35.0% | |
| TTATTCCACGGTTCATTGAT+GGG | - | tig0019485:55281-55300 | None:intergenic | 35.0% | |
| TTTATTCCACGGTTCATTGA+TGG | - | tig0019485:55282-55301 | None:intergenic | 35.0% | |
| ! | TGAAGCACTACTTTATTCCA+CGG | - | tig0019485:55293-55312 | None:intergenic | 35.0% |
| !! | AGTTGATGGATTCAGTTCTT+AGG | + | tig0019485:55357-55376 | Msa1374330:three_prime_UTR | 35.0% |
| AATGAAGTAGGGAAGTCACT+TGG | - | tig0019485:50304-50323 | None:intergenic | 40.0% | |
| TCTTCTCTTTGCCTCTTCAA+GGG | - | tig0019485:50402-50421 | None:intergenic | 40.0% | |
| TTCTTCTCTTTGCCTCTTCA+AGG | - | tig0019485:50403-50422 | None:intergenic | 40.0% | |
| GAAGATCAACTACCTCACAA+CGG | + | tig0019485:50432-50451 | Msa1374330:CDS | 40.0% | |
| ! | CCATTTGGTTGAGGTTCTTT+TGG | - | tig0019485:50474-50493 | None:intergenic | 40.0% |
| CCAAAAGAACCTCAACCAAA+TGG | + | tig0019485:50471-50490 | Msa1374330:CDS | 40.0% | |
| TATCTTCTGTTATTCCTGGC+TGG | + | tig0019485:50496-50515 | Msa1374330:CDS | 40.0% | |
| !! | TCTCTGAAATTAGCCCAATG+TGG | + | tig0019485:50520-50539 | Msa1374330:CDS | 40.0% |
| GTCATAAGAGAAAACGAACC+AGG | - | tig0019485:50546-50565 | None:intergenic | 40.0% | |
| TGATTGTCAGCTGTTAGTTG+TGG | + | tig0019485:50705-50724 | Msa1374330:intron | 40.0% | |
| ! | TGGTATAGTGTCACCTTTTG+AGG | + | tig0019485:51324-51343 | Msa1374330:intron | 40.0% |
| TATTGGTCATAGGGTGAAAG+TGG | + | tig0019485:51397-51416 | Msa1374330:intron | 40.0% | |
| TATGTTTGGATGGAGGGTTT+AGG | + | tig0019485:51437-51456 | Msa1374330:intron | 40.0% | |
| !! | TTTTCAGGGTCTGTTTCAGA+GGG | - | tig0019485:51621-51640 | None:intergenic | 40.0% |
| !! | ATTTTCAGGGTCTGTTTCAG+AGG | - | tig0019485:51622-51641 | None:intergenic | 40.0% |
| TTCGCTGCAAACATTTGGTA+TGG | + | tig0019485:51803-51822 | Msa1374330:intron | 40.0% | |
| ! | TTTGTTGTAATTTGCAGGGG+AGG | + | tig0019485:51979-51998 | Msa1374330:intron | 40.0% |
| !!! | GCAAGGTTCTTGTTTTGGAT+GGG | + | tig0019485:52170-52189 | Msa1374330:CDS | 40.0% |
| !!! | CAAGGTTCTTGTTTTGGATG+GGG | + | tig0019485:52171-52190 | Msa1374330:CDS | 40.0% |
| ATGAGTGATCATCTCTTGGT+AGG | - | tig0019485:52227-52246 | None:intergenic | 40.0% | |
| GAAGATGAGTGATCATCTCT+TGG | - | tig0019485:52231-52250 | None:intergenic | 40.0% | |
| CTCAATTCCAAACCCCAAAA+AGG | + | tig0019485:52258-52277 | Msa1374330:CDS | 40.0% | |
| GATGGTTGCTTAGAGGAATT+TGG | + | tig0019485:52422-52441 | Msa1374330:intron | 40.0% | |
| CGTTACAGTGTTGTCAATCT+CGG | + | tig0019485:52616-52635 | Msa1374330:intron | 40.0% | |
| GTTACAGTGTTGTCAATCTC+GGG | + | tig0019485:52617-52636 | Msa1374330:intron | 40.0% | |
| GCTTTAGCACTGTAGCATAA+TGG | - | tig0019485:52671-52690 | None:intergenic | 40.0% | |
| ACAGCAGCACTATAATGTAG+TGG | - | tig0019485:52757-52776 | None:intergenic | 40.0% | |
| ATATGTCGAAGAGAGTAGGA+AGG | + | tig0019485:52805-52824 | Msa1374330:intron | 40.0% | |
| CAACATTCCATTCTCAAGAG+TGG | - | tig0019485:52866-52885 | None:intergenic | 40.0% | |
| CACTCTTGAGAATGGAATGT+TGG | + | tig0019485:52864-52883 | Msa1374330:intron | 40.0% | |
| !! | TGTTAGGTTTTGGTCATTGG+TGG | + | tig0019485:52974-52993 | Msa1374330:intron | 40.0% |
| GAAAAAAAAAAAGCGAGGGG+GGG | - | tig0019485:53486-53505 | None:intergenic | 40.0% | |
| GGAAAAAAAAAAAGCGAGGG+GGG | - | tig0019485:53487-53506 | None:intergenic | 40.0% | |
| CCACGTGTGACACTTAATAT+CGG | + | tig0019485:53709-53728 | Msa1374330:CDS | 40.0% | |
| ACTGCATCATAAGTTCCTTC+TGG | - | tig0019485:53853-53872 | None:intergenic | 40.0% | |
| GTGGATTCATCTGATCCTAT+TGG | + | tig0019485:53877-53896 | Msa1374330:CDS | 40.0% | |
| ! | CTTGCAACCGACTCAAAAAA+GGG | - | tig0019485:54024-54043 | None:intergenic | 40.0% |
| !!! | CTTTTTTGAGTCGGTTGCAA+GGG | + | tig0019485:54023-54042 | Msa1374330:CDS | 40.0% |
| TGACAGAGCCTTTGAATACT+TGG | - | tig0019485:54137-54156 | None:intergenic | 40.0% | |
| TTATGCTTTGCTCAACTGAG+GGG | + | tig0019485:54736-54755 | Msa1374330:CDS | 40.0% | |
| !!! | TAAGGGAAGTTTTGGGGTAA+GGG | - | tig0019485:54878-54897 | None:intergenic | 40.0% |
| ! | TTTTAGGCCTCATTAGGGTT+TGG | - | tig0019485:54914-54933 | None:intergenic | 40.0% |
| ! | AACAAGGGCTTTAGTGACAT+AGG | + | tig0019485:54992-55011 | Msa1374330:intron | 40.0% |
| GCTTTAGTGACATAGGACTT+AGG | + | tig0019485:54999-55018 | Msa1374330:intron | 40.0% | |
| AAAAGACCCACAAACAAGTC+AGG | - | tig0019485:55030-55049 | None:intergenic | 40.0% | |
| ATTGCTCTCTTGGCAAAAGA+TGG | - | tig0019485:55160-55179 | None:intergenic | 40.0% | |
| CCAAACCAAACCAAACATGG+CGG | + | tig0019485:50335-50354 | Msa1374330:exon | 45.0% | |
| AAGGGAAAATCTGTGGACTC+AGG | - | tig0019485:50384-50403 | None:intergenic | 45.0% | |
| CCTCTTCAAGGGAAAATCTG+TGG | - | tig0019485:50391-50410 | None:intergenic | 45.0% | |
| ! | CCACAGATTTTCCCTTGAAG+AGG | + | tig0019485:50388-50407 | Msa1374330:CDS | 45.0% |
| CTAATTTCAGAGAACCAGCC+AGG | - | tig0019485:50513-50532 | None:intergenic | 45.0% | |
| AAAACGAACCAGGCCACATT+GGG | - | tig0019485:50536-50555 | None:intergenic | 45.0% | |
| GTCAGCTGTTAGTTGTGGTT+TGG | + | tig0019485:50710-50729 | Msa1374330:intron | 45.0% | |
| AGCGCAGTGTGAGATTTCAA+GGG | + | tig0019485:51152-51171 | Msa1374330:intron | 45.0% | |
| AAAGTGGTGATTGAACTCCG+AGG | + | tig0019485:51413-51432 | Msa1374330:intron | 45.0% | |
| AAGTGGTGATTGAACTCCGA+GGG | + | tig0019485:51414-51433 | Msa1374330:intron | 45.0% | |
| ! | TTGAACTCCGAGGGTATGTT+TGG | + | tig0019485:51423-51442 | Msa1374330:intron | 45.0% |
| TTTGGATGGAGGGTTTAGGA+GGG | + | tig0019485:51441-51460 | Msa1374330:intron | 45.0% | |
| TTTCAGGGTCTGTTTCAGAG+GGG | - | tig0019485:51620-51639 | None:intergenic | 45.0% | |
| GTTCTTAAGTAGCTCAGTGG+TGG | + | tig0019485:51655-51674 | Msa1374330:intron | 45.0% | |
| TCAGGATGTTATGGTCTTCC+AGG | + | tig0019485:52051-52070 | Msa1374330:CDS | 45.0% | |
| TAACTGAAGCTGCATGTACC+TGG | - | tig0019485:52072-52091 | None:intergenic | 45.0% | |
| GTAGTCAGCAACATATGGCA+AGG | + | tig0019485:52153-52172 | Msa1374330:intron | 45.0% | |
| !!! | GGCAAGGTTCTTGTTTTGGA+TGG | + | tig0019485:52169-52188 | Msa1374330:CDS | 45.0% |
| GGTCATTCAGCTCACAGAAA+GGG | + | tig0019485:52192-52211 | Msa1374330:CDS | 45.0% | |
| ! | GGGTTTGGAATTGAGCAAAG+TGG | - | tig0019485:52253-52272 | None:intergenic | 45.0% |
| TCTCGGGATGTGGAAAATAG+TGG | + | tig0019485:52633-52652 | Msa1374330:intron | 45.0% | |
| CTGCATGAAATCACGTCTCA+CGG | + | tig0019485:52708-52727 | Msa1374330:intron | 45.0% | |
| CACGCTTGAAAAGTTACGCA+AGG | - | tig0019485:52916-52935 | None:intergenic | 45.0% | |
| !! | TAGGTTTTGGTCATTGGTGG+AGG | + | tig0019485:52977-52996 | Msa1374330:intron | 45.0% |
| CATCTTACTTGGGTCCTGTT+TGG | + | tig0019485:53157-53176 | Msa1374330:intron | 45.0% | |
| ! | AAGCTGTTTCCGTGAACTCT+TGG | + | tig0019485:53379-53398 | Msa1374330:intron | 45.0% |
| CCGATATTAAGTGTCACACG+TGG | - | tig0019485:53712-53731 | None:intergenic | 45.0% | |
| GTGACACTTAATATCGGCGA+TGG | + | tig0019485:53715-53734 | Msa1374330:CDS | 45.0% | |
| !! | TTTTTGAAGGCAGCTCCAGA+AGG | + | tig0019485:53835-53854 | Msa1374330:CDS | 45.0% |
| ! | CCTTGCAACCGACTCAAAAA+AGG | - | tig0019485:54025-54044 | None:intergenic | 45.0% |
| !!! | CCTTTTTTGAGTCGGTTGCA+AGG | + | tig0019485:54022-54041 | Msa1374330:CDS | 45.0% |
| ! | GTACTCAGGCGGAAAGTATA+TGG | + | tig0019485:54070-54089 | Msa1374330:CDS | 45.0% |
| GCATATCATTGAGGACATCG+TGG | + | tig0019485:54101-54120 | Msa1374330:CDS | 45.0% | |
| AAGGCTCTGTCAACTATGCT+TGG | + | tig0019485:54145-54164 | Msa1374330:CDS | 45.0% | |
| TGTCAACTATGCTTGGACCA+CGG | + | tig0019485:54152-54171 | Msa1374330:CDS | 45.0% | |
| AGAACACACCTTGGGTATGT+AGG | - | tig0019485:54180-54199 | None:intergenic | 45.0% | |
| GCAGAGTGTAAATGGGAAAG+TGG | - | tig0019485:54218-54237 | None:intergenic | 45.0% | |
| GCTATAGAATTGTCGCAGAG+CGG | - | tig0019485:54322-54341 | None:intergenic | 45.0% | |
| ! | CAACACAATTGGTCTCCAAG+AGG | - | tig0019485:54591-54610 | None:intergenic | 45.0% |
| CTCTTGGAGACCAATTGTGT+TGG | + | tig0019485:54589-54608 | Msa1374330:intron | 45.0% | |
| ! | TTCGGTCGATTTCAAGCATC+CGG | + | tig0019485:54761-54780 | Msa1374330:CDS | 45.0% |
| !!! | CTAAGGGAAGTTTTGGGGTA+AGG | - | tig0019485:54879-54898 | None:intergenic | 45.0% |
| ! | CAACGCTAAGGGAAGTTTTG+GGG | - | tig0019485:54884-54903 | None:intergenic | 45.0% |
| ! | CCAACGCTAAGGGAAGTTTT+GGG | - | tig0019485:54885-54904 | None:intergenic | 45.0% |
| ! | GCCTCATTAGGGTTTGGTTT+GGG | - | tig0019485:54908-54927 | None:intergenic | 45.0% |
| TAGTGACATAGGACTTAGGC+CGG | + | tig0019485:55003-55022 | Msa1374330:intron | 45.0% | |
| GCAAACAGAAAGCTGCTGAA+TGG | - | tig0019485:55138-55157 | None:intergenic | 45.0% | |
| !! | TGGGATTGAAAGGGTGCTTA+TGG | + | tig0019485:55210-55229 | Msa1374330:three_prime_UTR | 45.0% |
| !! | AAAAAAAAATTAACATAAAA+GGG | - | tig0019485:50913-50932 | None:intergenic | 5.0% |
| !! | TAAAAAAAAATTAACATAAA+AGG | - | tig0019485:50914-50933 | None:intergenic | 5.0% |
| !!! | TTATTATTATTTTTTTGTTT+AGG | + | tig0019485:53973-53992 | Msa1374330:intron | 5.0% |
| ! | GGAAGTCACTTGGTTCGTGT+GGG | - | tig0019485:50294-50313 | None:intergenic | 50.0% |
| !! | CCGCCATGTTTGGTTTGGTT+TGG | - | tig0019485:50338-50357 | None:intergenic | 50.0% |
| ATCTGTGGACTCAGGAAGTG+TGG | - | tig0019485:50376-50395 | None:intergenic | 50.0% | |
| GTTTCAGAGACACCGTTGTG+AGG | - | tig0019485:50447-50466 | None:intergenic | 50.0% | |
| GAAATTAGCCCAATGTGGCC+TGG | + | tig0019485:50525-50544 | Msa1374330:CDS | 50.0% | |
| GAAAACGAACCAGGCCACAT+TGG | - | tig0019485:50537-50556 | None:intergenic | 50.0% | |
| CAGCGCAGTGTGAGATTTCA+AGG | + | tig0019485:51151-51170 | Msa1374330:intron | 50.0% | |
| ! | ACTCCGAGGGTATGTTTGGA+TGG | + | tig0019485:51427-51446 | Msa1374330:intron | 50.0% |
| CCTCCATCCAAACATACCCT+CGG | - | tig0019485:51433-51452 | None:intergenic | 50.0% | |
| ! | CGAGGGTATGTTTGGATGGA+GGG | + | tig0019485:51431-51450 | Msa1374330:intron | 50.0% |
| GTTTGGATGGAGGGTTTAGG+AGG | + | tig0019485:51440-51459 | Msa1374330:intron | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | + | tig0019485:51442-51461 | Msa1374330:intron | 50.0% | |
| !!! | TTTCAGAGGGGGGTTTTGGA+TGG | - | tig0019485:51608-51627 | None:intergenic | 50.0% |
| ! | TCTGTTTCAGAGGGGGGTTT+TGG | - | tig0019485:51612-51631 | None:intergenic | 50.0% |
| TTCAGGGTCTGTTTCAGAGG+GGG | - | tig0019485:51619-51638 | None:intergenic | 50.0% | |
| GGGTCATTCAGCTCACAGAA+AGG | + | tig0019485:52191-52210 | Msa1374330:CDS | 50.0% | |
| GTGTTGTCAATCTCGGGATG+TGG | + | tig0019485:52623-52642 | Msa1374330:intron | 50.0% | |
| CACGTCTCACGGAGTAATAG+TGG | + | tig0019485:52719-52738 | Msa1374330:intron | 50.0% | |
| TTGGTCATTGGTGGAGGAGA+TGG | + | tig0019485:52983-53002 | Msa1374330:CDS | 50.0% | |
| GAGATACCCACCCAACTTGA+AGG | - | tig0019485:53508-53527 | None:intergenic | 50.0% | |
| ! | GATTTTAGGCCGCATGACGA+AGG | - | tig0019485:53566-53585 | None:intergenic | 50.0% |
| TGAGTACACACAACACCTCC+TGG | - | tig0019485:54057-54076 | None:intergenic | 50.0% | |
| !! | AGGAGGTGTTGTGTGTACTC+AGG | + | tig0019485:54056-54075 | Msa1374330:CDS | 50.0% |
| ! | AGGTGTTGTGTGTACTCAGG+CGG | + | tig0019485:54059-54078 | Msa1374330:CDS | 50.0% |
| GGATGCTTGAAATCGACCGA+AGG | - | tig0019485:54762-54781 | None:intergenic | 50.0% | |
| GAGAATGATAGCCAGCATGC+AGG | + | tig0019485:54798-54817 | Msa1374330:CDS | 50.0% | |
| TCAATGGTCTTCCTGCATGC+TGG | - | tig0019485:54812-54831 | None:intergenic | 50.0% | |
| CCCAAAACTTCCCTTAGCGT+TGG | + | tig0019485:54882-54901 | Msa1374330:intron | 50.0% | |
| ! | GCCAACGCTAAGGGAAGTTT+TGG | - | tig0019485:54886-54905 | None:intergenic | 50.0% |
| !! | TTGGTTTGGGCCAACGCTAA+GGG | - | tig0019485:54895-54914 | None:intergenic | 50.0% |
| !! | TTTGGTTTGGGCCAACGCTA+AGG | - | tig0019485:54896-54915 | None:intergenic | 50.0% |
| GCCCAAACCAAACCCTAATG+AGG | + | tig0019485:54904-54923 | Msa1374330:intron | 50.0% | |
| ! | GGCCTCATTAGGGTTTGGTT+TGG | - | tig0019485:54909-54928 | None:intergenic | 50.0% |
| ACCCACAAACAAGTCAGGAC+CGG | - | tig0019485:55025-55044 | None:intergenic | 50.0% | |
| ! | ACGGTTCATTGATGGGCAGA+TGG | - | tig0019485:55274-55293 | None:intergenic | 50.0% |
| ATCTGCCCATCAATGAACCG+TGG | + | tig0019485:55273-55292 | Msa1374330:three_prime_UTR | 50.0% | |
| ! | GGGAAGTCACTTGGTTCGTG+TGG | - | tig0019485:50295-50314 | None:intergenic | 55.0% |
| TGCTGCCGCCATGTTTGGTT+TGG | - | tig0019485:50343-50362 | None:intergenic | 55.0% | |
| ! | CCGAGGGTATGTTTGGATGG+AGG | + | tig0019485:51430-51449 | Msa1374330:intron | 55.0% |
| TCAGGGTCTGTTTCAGAGGG+GGG | - | tig0019485:51618-51637 | None:intergenic | 55.0% | |
| AGGGGAGGCTCACTCATTGA+AGG | + | tig0019485:51994-52013 | Msa1374330:intron | 55.0% | |
| GGAGGCTCACTCATTGAAGG+TGG | + | tig0019485:51997-52016 | Msa1374330:CDS | 55.0% | |
| AGCAGGAGTTAGCACGGTGA+CGG | - | tig0019485:52499-52518 | None:intergenic | 55.0% | |
| GTGTGCAGCAGGAGTTAGCA+CGG | - | tig0019485:52505-52524 | None:intergenic | 55.0% | |
| GTCATTGGTGGAGGAGATGG+AGG | + | tig0019485:52986-53005 | Msa1374330:CDS | 55.0% | |
| AATGGCGTGAAACTTCCCGC+AGG | - | tig0019485:53015-53034 | None:intergenic | 55.0% | |
| GGAGAGGCAGACTGAGACTA+GGG | - | tig0019485:53465-53484 | None:intergenic | 55.0% | |
| AAAAAAAGCGAGGGGGGGAG+AGG | - | tig0019485:53481-53500 | None:intergenic | 55.0% | |
| CCTTGGGTATGTAGGAACCG+TGG | - | tig0019485:54172-54191 | None:intergenic | 55.0% | |
| CCACGGTTCCTACATACCCA+AGG | + | tig0019485:54169-54188 | Msa1374330:CDS | 55.0% | |
| TTGCTCAACTGAGGGGCCTT+CGG | + | tig0019485:54743-54762 | Msa1374330:CDS | 55.0% | |
| !! | GCCGGTCCTGACTTGTTTGT+GGG | + | tig0019485:55021-55040 | Msa1374330:intron | 55.0% |
| TCTGCTGCTGCCGCCATGTT+TGG | - | tig0019485:50348-50367 | None:intergenic | 60.0% | |
| GCAGGAGTTAGCACGGTGAC+GGG | - | tig0019485:52498-52517 | None:intergenic | 60.0% | |
| GAGGAGATGGAGGAGTCCTG+CGG | + | tig0019485:52996-53015 | Msa1374330:CDS | 60.0% | |
| AGGAGATGGAGGAGTCCTGC+GGG | + | tig0019485:52997-53016 | Msa1374330:CDS | 60.0% | |
| GGGAGAGGCAGACTGAGACT+AGG | - | tig0019485:53466-53485 | None:intergenic | 60.0% | |
| GTTGCAAGGGCTCTTCGTCC+AGG | + | tig0019485:54036-54055 | Msa1374330:CDS | 60.0% | |
| !! | GGCCGGTCCTGACTTGTTTG+TGG | + | tig0019485:55020-55039 | Msa1374330:intron | 60.0% |
| GCAAGGGCTCTTCGTCCAGG+AGG | + | tig0019485:54039-54058 | Msa1374330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019485 | gene | 50274 | 55541 | 50274 | ID=Msa1374330;Name=Msa1374330 |
| tig0019485 | mRNA | 50274 | 55541 | 50274 | ID=Msa1374330-mRNA-1;Parent=Msa1374330;Name=Msa1374330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=77|1|0.87|1|1|1|8|343|374 |
| tig0019485 | exon | 50274 | 50546 | 50274 | ID=Msa1374330-mRNA-1:exon:3817;Parent=Msa1374330-mRNA-1 |
| tig0019485 | exon | 51996 | 52072 | 51996 | ID=Msa1374330-mRNA-1:exon:3818;Parent=Msa1374330-mRNA-1 |
| tig0019485 | exon | 52157 | 52279 | 52157 | ID=Msa1374330-mRNA-1:exon:3819;Parent=Msa1374330-mRNA-1 |
| tig0019485 | exon | 52980 | 53084 | 52980 | ID=Msa1374330-mRNA-1:exon:3820;Parent=Msa1374330-mRNA-1 |
| tig0019485 | exon | 53664 | 53898 | 53664 | ID=Msa1374330-mRNA-1:exon:3821;Parent=Msa1374330-mRNA-1 |
| tig0019485 | exon | 53995 | 54190 | 53995 | ID=Msa1374330-mRNA-1:exon:3822;Parent=Msa1374330-mRNA-1 |
| tig0019485 | exon | 54722 | 54848 | 54722 | ID=Msa1374330-mRNA-1:exon:3823;Parent=Msa1374330-mRNA-1 |
| tig0019485 | exon | 55133 | 55541 | 55133 | ID=Msa1374330-mRNA-1:exon:3824;Parent=Msa1374330-mRNA-1 |
| tig0019485 | five_prime_UTR | 50274 | 50350 | 50274 | ID=Msa1374330-mRNA-1:five_prime_utr;Parent=Msa1374330-mRNA-1 |
| tig0019485 | CDS | 50351 | 50546 | 50351 | ID=Msa1374330-mRNA-1:cds;Parent=Msa1374330-mRNA-1 |
| tig0019485 | CDS | 51996 | 52072 | 51996 | ID=Msa1374330-mRNA-1:cds;Parent=Msa1374330-mRNA-1 |
| tig0019485 | CDS | 52157 | 52279 | 52157 | ID=Msa1374330-mRNA-1:cds;Parent=Msa1374330-mRNA-1 |
| tig0019485 | CDS | 52980 | 53084 | 52980 | ID=Msa1374330-mRNA-1:cds;Parent=Msa1374330-mRNA-1 |
| tig0019485 | CDS | 53664 | 53898 | 53664 | ID=Msa1374330-mRNA-1:cds;Parent=Msa1374330-mRNA-1 |
| tig0019485 | CDS | 53995 | 54190 | 53995 | ID=Msa1374330-mRNA-1:cds;Parent=Msa1374330-mRNA-1 |
| tig0019485 | CDS | 54722 | 54848 | 54722 | ID=Msa1374330-mRNA-1:cds;Parent=Msa1374330-mRNA-1 |
| tig0019485 | CDS | 55133 | 55198 | 55133 | ID=Msa1374330-mRNA-1:cds;Parent=Msa1374330-mRNA-1 |
| tig0019485 | three_prime_UTR | 55199 | 55541 | 55199 | ID=Msa1374330-mRNA-1:three_prime_utr;Parent=Msa1374330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
