Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721190 | AEX20346.1 | 89.199 | 287 | 1 | 1 | 1 | 287 | 88 | 344 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721190 | sp|Q9ZTR1|SPDS1_PEA | 86.411 | 287 | 9 | 1 | 1 | 287 | 78 | 334 | 1.67e-180 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721190 | H2EIY6 | 89.199 | 287 | 1 | 1 | 1 | 287 | 88 | 344 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0642650 | Msa0721190 | 0.805412 | 1.352004e-49 | -8.615850e-47 |
| Msa0667220 | Msa0721190 | 0.801334 | 9.454588e-49 | -8.615850e-47 |
| Msa0721190 | Msa0763580 | 0.858642 | 7.159293e-63 | -8.615850e-47 |
| Msa0721190 | Msa0810020 | 0.808936 | 2.423800e-50 | -8.615850e-47 |
| Msa0721190 | Msa0842920 | 0.932489 | 7.884299e-95 | -8.615850e-47 |
| Msa0721190 | Msa0905550 | 0.815614 | 8.448441e-52 | -8.615850e-47 |
| Msa0721190 | Msa0931480 | 0.804977 | 1.666960e-49 | -8.615850e-47 |
| Msa0721190 | Msa0937550 | 0.824480 | 7.889797e-54 | -8.615850e-47 |
| Msa0721190 | Msa0951710 | 0.800598 | 1.336767e-48 | -8.615850e-47 |
| Msa0721190 | Msa0958020 | 0.806274 | 8.909438e-50 | -8.615850e-47 |
| Msa0721190 | Msa0974750 | 0.809844 | 1.547871e-50 | -8.615850e-47 |
| Msa0721190 | Msa1106810 | 0.805339 | 1.400238e-49 | -8.615850e-47 |
| Msa0721190 | Msa1150970 | 0.800135 | 1.660993e-48 | -8.615850e-47 |
| Msa0721190 | Msa1160570 | 0.805751 | 1.147281e-49 | -8.615850e-47 |
| Msa0721190 | Msa1210810 | 0.833064 | 6.608955e-56 | -8.615850e-47 |
| Msa0721190 | Msa1220450 | -0.807442 | 5.045655e-50 | -8.615850e-47 |
| Msa0721190 | Msa1220460 | -0.803770 | 2.974343e-49 | -8.615850e-47 |
| Msa0721190 | Msa1220480 | -0.803143 | 4.012250e-49 | -8.615850e-47 |
| Msa0721190 | Msa1223840 | 0.806712 | 7.199796e-50 | -8.615850e-47 |
| Msa0721190 | Msa1249870 | 0.809220 | 2.107327e-50 | -8.615850e-47 |
| Msa0721190 | Msa1263030 | 0.820697 | 5.979750e-53 | -8.615850e-47 |
| Msa0721190 | Msa1374330 | 0.927497 | 1.082634e-91 | -8.615850e-47 |
| Msa0721190 | Msa1381130 | 0.808488 | 3.022351e-50 | -8.615850e-47 |
| Msa0721190 | Msa1382720 | 0.803326 | 3.677781e-49 | -8.615850e-47 |
| Msa0721190 | Msa1449880 | 0.817862 | 2.645348e-52 | -8.615850e-47 |
| Msa0185390 | Msa0721190 | 0.812838 | 3.465247e-51 | -8.615850e-47 |
| Msa0388720 | Msa0721190 | 0.816464 | 5.455310e-52 | -8.615850e-47 |
| Msa0538570 | Msa0721190 | 0.804068 | 2.578998e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721190 | MtrunA17_Chr5g0413701 | 88.850 | 287 | 2 | 1 | 1 | 287 | 87 | 343 | 0.0 | 513 |
| Msa0721190 | MtrunA17_Chr8g0365071 | 79.443 | 287 | 29 | 1 | 1 | 287 | 86 | 342 | 1.62e-167 | 468 |
| Msa0721190 | MtrunA17_Chr3g0126551 | 64.437 | 284 | 68 | 3 | 1 | 282 | 101 | 353 | 2.57e-124 | 358 |
| Msa0721190 | MtrunA17_Chr3g0117881 | 57.732 | 291 | 89 | 2 | 1 | 287 | 76 | 336 | 4.46e-124 | 357 |
| Msa0721190 | MtrunA17_Chr1g0158851 | 62.324 | 284 | 73 | 4 | 1 | 282 | 106 | 357 | 7.05e-117 | 340 |
| Msa0721190 | MtrunA17_Chr5g0394371 | 31.667 | 240 | 120 | 7 | 2 | 233 | 58 | 261 | 5.31e-28 | 110 |
| Msa0721190 | MtrunA17_Chr1g0150851 | 29.918 | 244 | 133 | 7 | 2 | 240 | 75 | 285 | 1.10e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0721190 | AT1G23820.1 | 77.003 | 287 | 35 | 2 | 1 | 287 | 79 | 334 | 4.91e-162 | 454 |
| Msa0721190 | AT1G70310.1 | 75.000 | 288 | 41 | 2 | 1 | 287 | 83 | 340 | 3.65e-154 | 434 |
| Msa0721190 | AT5G53120.1 | 63.860 | 285 | 71 | 3 | 1 | 284 | 102 | 355 | 7.47e-122 | 353 |
| Msa0721190 | AT5G53120.4 | 63.860 | 285 | 71 | 3 | 1 | 284 | 102 | 355 | 7.47e-122 | 353 |
| Msa0721190 | AT5G53120.2 | 63.860 | 285 | 71 | 3 | 1 | 284 | 102 | 355 | 7.47e-122 | 353 |
| Msa0721190 | AT5G53120.5 | 63.860 | 285 | 71 | 3 | 1 | 284 | 102 | 355 | 7.47e-122 | 353 |
| Msa0721190 | AT5G53120.3 | 63.860 | 285 | 71 | 3 | 1 | 284 | 102 | 355 | 7.47e-122 | 353 |
| Msa0721190 | AT1G23820.2 | 76.682 | 223 | 22 | 1 | 1 | 223 | 123 | 315 | 1.63e-121 | 351 |
| Msa0721190 | AT5G53120.7 | 63.860 | 285 | 71 | 3 | 1 | 284 | 119 | 372 | 2.06e-121 | 352 |
| Msa0721190 | AT5G53120.6 | 55.769 | 312 | 79 | 5 | 1 | 284 | 102 | 382 | 1.28e-117 | 343 |
| Msa0721190 | AT5G19530.2 | 27.931 | 290 | 158 | 9 | 2 | 286 | 59 | 302 | 1.17e-28 | 112 |
| Msa0721190 | AT5G19530.1 | 27.931 | 290 | 158 | 9 | 2 | 286 | 66 | 309 | 1.46e-28 | 112 |
Find 73 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAATCACTTCACTGTTT+AGG | 0.197894 | 5_1:-17633699 | Msa0721190:CDS |
| CTTAATCACTTCACTGTTTA+GGG | 0.208260 | 5_1:-17633698 | Msa0721190:CDS |
| CTCAAACATTATTGACAATA+TGG | 0.252304 | 5_1:-17632059 | Msa0721190:three_prime_UTR |
| TCAAGGAAAATCTGATTATC+AGG | 0.273203 | 5_1:-17635424 | Msa0721190:five_prime_UTR |
| ATATGGCAAGGTTCTTGTTT+TGG | 0.280455 | 5_1:-17635292 | Msa0721190:CDS |
| CTCAATTCCAAACCCCAAAA+AGG | 0.285078 | 5_1:-17635199 | Msa0721190:intron |
| TCAAAACCTACTGCTATATC+AGG | 0.285866 | 5_1:+17633781 | None:intergenic |
| TGGGATTGAAAGGGTGCTTA+TGG | 0.300718 | 5_1:-17632236 | Msa0721190:three_prime_UTR |
| TGAACTTTGTTGTAATTTGC+AGG | 0.310737 | 5_1:-17635483 | Msa0721190:five_prime_UTR |
| AGTTGATGGATTCAGTTCTT+AGG | 0.318848 | 5_1:-17632089 | Msa0721190:three_prime_UTR |
| TGGATCTATCGATCAATAAA+AGG | 0.320193 | 5_1:+17632195 | None:intergenic |
| TCAGGATGTTATGGTCTTCC+AGG | 0.350984 | 5_1:-17635406 | Msa0721190:intron |
| TTGGTCATTGGTGGAGGAGA+TGG | 0.355582 | 5_1:-17634474 | Msa0721190:CDS |
| TTTAGAAGCAATTGCTCTCT+TGG | 0.357834 | 5_1:+17632279 | None:intergenic |
| ACTGCATCATAAGTTCCTTC+TGG | 0.359338 | 5_1:+17633613 | None:intergenic |
| TGAAAATGAGTTGTAGTTGA+TGG | 0.372784 | 5_1:-17632103 | Msa0721190:three_prime_UTR |
| ATCTGATTATCAGGATGTTA+TGG | 0.375563 | 5_1:-17635415 | Msa0721190:exon |
| TGACAGAGCCTTTGAATACT+TGG | 0.386990 | 5_1:+17633326 | None:intergenic |
| TTGCTCAACTGAGGGGCCTT+CGG | 0.394265 | 5_1:-17632703 | Msa0721190:CDS |
| TTTATTCCACGGTTCATTGA+TGG | 0.394520 | 5_1:+17632167 | None:intergenic |
| GTGGATTCATCTGATCCTAT+TGG | 0.395416 | 5_1:-17633586 | Msa0721190:intron |
| GGTTTGTCTTTCAATGATCT+AGG | 0.414313 | 5_1:-17633658 | Msa0721190:CDS |
| GTACTCAGGCGGAAAGTATA+TGG | 0.432205 | 5_1:-17633390 | Msa0721190:CDS |
| GTGGAAAAGATTCTGTTTCA+AGG | 0.447500 | 5_1:-17635441 | Msa0721190:five_prime_UTR |
| TTCGGTCGATTTCAAGCATC+CGG | 0.461644 | 5_1:-17632685 | Msa0721190:CDS |
| TGGCTATCATTCTCATCAAT+AGG | 0.466884 | 5_1:+17632657 | None:intergenic |
| TCAGAGTTGTAAAATTTCAA+TGG | 0.468115 | 5_1:+17632621 | None:intergenic |
| TGAGTACACACAACACCTCC+TGG | 0.469052 | 5_1:+17633406 | None:intergenic |
| GTTGCAAGGGCTCTTCGTCC+AGG | 0.475620 | 5_1:-17633424 | Msa0721190:CDS |
| TTTATGCTTTGCTCAACTGA+GGG | 0.479096 | 5_1:-17632711 | Msa0721190:CDS |
| AACTTATGATGCAGTTATTG+TGG | 0.485527 | 5_1:-17633605 | Msa0721190:CDS |
| GTCATTGGTGGAGGAGATGG+AGG | 0.490380 | 5_1:-17634471 | Msa0721190:CDS |
| ATTGCTCTCTTGGCAAAAGA+TGG | 0.491734 | 5_1:+17632289 | None:intergenic |
| CCACGTGTGACACTTAATAT+CGG | 0.495007 | 5_1:-17633754 | Msa0721190:CDS |
| TCAATGGTCTTCCTGCATGC+TGG | 0.497270 | 5_1:+17632637 | None:intergenic |
| AAGGCTCTGTCAACTATGCT+TGG | 0.497721 | 5_1:-17633315 | Msa0721190:CDS |
| TTCTCATCAATAGGATTCAC+CGG | 0.513261 | 5_1:+17632666 | None:intergenic |
| AGGGGAGGCTCACTCATTGA+AGG | 0.518756 | 5_1:-17635463 | Msa0721190:five_prime_UTR |
| GAACTTTGTTGTAATTTGCA+GGG | 0.522336 | 5_1:-17635482 | Msa0721190:five_prime_UTR |
| TTATTCCACGGTTCATTGAT+GGG | 0.525894 | 5_1:+17632168 | None:intergenic |
| GCAAACAGAAAGCTGCTGAA+TGG | 0.526418 | 5_1:+17632311 | None:intergenic |
| GAAGATGAGTGATCATCTCT+TGG | 0.533026 | 5_1:+17635229 | None:intergenic |
| AGAACACACCTTGGGTATGT+AGG | 0.534999 | 5_1:+17633283 | None:intergenic |
| AGGAGATGGAGGAGTCCTGC+GGG | 0.539206 | 5_1:-17634460 | Msa0721190:CDS |
| TGAAGCACTACTTTATTCCA+CGG | 0.553365 | 5_1:+17632156 | None:intergenic |
| TTTGTTGTAATTTGCAGGGG+AGG | 0.556736 | 5_1:-17635478 | Msa0721190:five_prime_UTR |
| ACGGTTCATTGATGGGCAGA+TGG | 0.560703 | 5_1:+17632175 | None:intergenic |
| GGTCATTCAGCTTACAGAAA+GGG | 0.570727 | 5_1:-17635265 | Msa0721190:CDS |
| GAGAATGATAGCCAGCATGC+AGG | 0.575153 | 5_1:-17632648 | Msa0721190:CDS |
| GTAGTCAGCAACATATGGCA+AGG | 0.575663 | 5_1:-17635304 | Msa0721190:intron |
| ATGAGTGATCATCTCTTGGT+AGG | 0.576912 | 5_1:+17635233 | None:intergenic |
| AACTTTGTTGTAATTTGCAG+GGG | 0.578777 | 5_1:-17635481 | Msa0721190:five_prime_UTR |
| GGGTCATTCAGCTTACAGAA+AGG | 0.580539 | 5_1:-17635266 | Msa0721190:CDS |
| GAGGAGATGGAGGAGTCCTG+CGG | 0.584086 | 5_1:-17634461 | Msa0721190:CDS |
| GCTTCATATGCATATCATTG+AGG | 0.585111 | 5_1:-17633368 | Msa0721190:CDS |
| AGGAGGTGTTGTGTGTACTC+AGG | 0.589734 | 5_1:-17633404 | Msa0721190:CDS |
| CATTTGTGAAATAGACAAGA+TGG | 0.590675 | 5_1:-17634403 | Msa0721190:CDS |
| CAAAACCTACTGCTATATCA+GGG | 0.592364 | 5_1:+17633782 | None:intergenic |
| AATTGTCGCCAAGTATTCAA+AGG | 0.594618 | 5_1:-17633334 | Msa0721190:CDS |
| TTATGCTTTGCTCAACTGAG+GGG | 0.601606 | 5_1:-17632710 | Msa0721190:CDS |
| TGTCAACTATGCTTGGACCA+CGG | 0.611981 | 5_1:-17633308 | Msa0721190:CDS |
| GGAGGCTCACTCATTGAAGG+TGG | 0.624884 | 5_1:-17635460 | Msa0721190:five_prime_UTR |
| GTGACACTTAATATCGGCGA+TGG | 0.629074 | 5_1:-17633748 | Msa0721190:CDS |
| GGGTTTGGAATTGAGCAAAG+AGG | 0.635906 | 5_1:+17635207 | None:intergenic |
| AGTGAAGTGATTAAGAAACA+TGG | 0.638704 | 5_1:+17633706 | None:intergenic |
| AGGTGTTGTGTGTACTCAGG+CGG | 0.646480 | 5_1:-17633401 | Msa0721190:CDS |
| CCACGGTTCCTACATACCCA+AGG | 0.659865 | 5_1:-17633291 | Msa0721190:intron |
| ATCTGCCCATCAATGAACCG+TGG | 0.662440 | 5_1:-17632173 | Msa0721190:three_prime_UTR |
| GCAAGGGCTCTTCGTCCAGG+AGG | 0.667733 | 5_1:-17633421 | Msa0721190:CDS |
| AATGGCGTGAAACTTCCCGC+AGG | 0.668044 | 5_1:+17634445 | None:intergenic |
| GGATGCTTGAAATCGACCGA+AGG | 0.670797 | 5_1:+17632687 | None:intergenic |
| CCGATATTAAGTGTCACACG+TGG | 0.687158 | 5_1:+17633754 | None:intergenic |
| CCTTGGGTATGTAGGAACCG+TGG | 0.729877 | 5_1:+17633291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATGATTATTTTTTATTA+TGG | - | chr5_1:17634631-17634650 | Msa0721190:intron | 10.0% |
| !! | ACATATACTAAATTATTAGA+GGG | + | chr5_1:17632250-17632269 | None:intergenic | 15.0% |
| !!! | TTTTAATCATTATATGTAGA+TGG | - | chr5_1:17632353-17632372 | Msa0721190:intron | 15.0% |
| !! | TAAAGACCATAAAAATTATA+AGG | + | chr5_1:17633864-17633883 | None:intergenic | 15.0% |
| !!! | TATAATTTTTATGGTCTTTA+CGG | - | chr5_1:17633864-17633883 | Msa0721190:intron | 15.0% |
| !!! | TTTTATTTTTTTTGTTTCAG+TGG | - | chr5_1:17634662-17634681 | Msa0721190:intron | 15.0% |
| !!! | TTTATTTTTTTTGTTTCAGT+GGG | - | chr5_1:17634663-17634682 | Msa0721190:intron | 15.0% |
| !!! | ATTTTTTAGAATCTAAAACA+AGG | - | chr5_1:17634936-17634955 | Msa0721190:intron | 15.0% |
| !!! | TTTTTTAGAATCTAAAACAA+GGG | - | chr5_1:17634937-17634956 | Msa0721190:intron | 15.0% |
| !!! | GAATTTTAACTTCAAAAAAT+AGG | + | chr5_1:17635406-17635425 | None:intergenic | 15.0% |
| !!! | AAAGTATCAAATACCTTTTT+GGG | + | chr5_1:17632223-17632242 | None:intergenic | 20.0% |
| !! | GACATATACTAAATTATTAG+AGG | + | chr5_1:17632251-17632270 | None:intergenic | 20.0% |
| !! | AATTCAGGATAATAATTGTA+AGG | - | chr5_1:17632319-17632338 | Msa0721190:intron | 20.0% |
| !! | ACTTAAACGTAAATAATCTA+CGG | + | chr5_1:17632514-17632533 | None:intergenic | 20.0% |
| !!! | AATAAGCTAAAAACAGTTTT+TGG | - | chr5_1:17633293-17633312 | Msa0721190:CDS | 20.0% |
| !!! | TTTTTTTTTTCCTTCAAGTT+GGG | - | chr5_1:17633439-17633458 | Msa0721190:CDS | 20.0% |
| !! | AAAAAAAAAACAGCAATAAG+CGG | + | chr5_1:17633484-17633503 | None:intergenic | 20.0% |
| !! | ATTAACAACATTGTAATATG+TGG | + | chr5_1:17634210-17634229 | None:intergenic | 20.0% |
| !!! | TGTTGTTAATTTTAAGATTG+CGG | - | chr5_1:17634220-17634239 | Msa0721190:intron | 20.0% |
| !! | AAAAATGGAGAGTTAATATT+TGG | + | chr5_1:17635058-17635077 | None:intergenic | 20.0% |
| !!! | AAATATTAACTCTCCATTTT+TGG | - | chr5_1:17635057-17635076 | Msa0721190:intron | 20.0% |
| !! | AAGTATCAAATACCTTTTTG+GGG | + | chr5_1:17632222-17632241 | None:intergenic | 25.0% |
| !!! | CAAAGTATCAAATACCTTTT+TGG | + | chr5_1:17632224-17632243 | None:intergenic | 25.0% |
| !! | ATTGACTTTCTTATGTAGTT+TGG | - | chr5_1:17632289-17632308 | Msa0721190:CDS | 25.0% |
| ! | TAGTTTGGCAAAAAAAATTC+AGG | - | chr5_1:17632304-17632323 | Msa0721190:CDS | 25.0% |
| ! | AATGTCTATATTGAATCTCT+TGG | - | chr5_1:17632400-17632419 | Msa0721190:intron | 25.0% |
| ! | GTAGATTATTTACGTTTAAG+TGG | - | chr5_1:17632513-17632532 | Msa0721190:intron | 25.0% |
| !! | TTCTATTTTCTGTTAGGTTT+TGG | - | chr5_1:17632913-17632932 | Msa0721190:intron | 25.0% |
| !!! | CTTTTTTTTTTCCTTCAAGT+TGG | - | chr5_1:17633438-17633457 | Msa0721190:CDS | 25.0% |
| !! | CTTTGCACAAAATAGATTTT+AGG | + | chr5_1:17633523-17633542 | None:intergenic | 25.0% |
| ! | TATATCAGGGAAAAATTGTT+TGG | + | chr5_1:17633614-17633633 | None:intergenic | 25.0% |
| !! | GAAACGCCTTATAATTTTTA+TGG | - | chr5_1:17633855-17633874 | Msa0721190:intron | 25.0% |
| !! | TATAACATGCTTTTCGATTA+GGG | - | chr5_1:17634609-17634628 | Msa0721190:intron | 25.0% |
| ! | TCAGAGTTGTAAAATTTCAA+TGG | + | chr5_1:17634788-17634807 | None:intergenic | 25.0% |
| !! | ATTGAAATTTTACAACTCTG+AGG | - | chr5_1:17634787-17634806 | Msa0721190:intron | 25.0% |
| ! | ACCATTATGTATTACTGTTA+GGG | + | chr5_1:17634915-17634934 | None:intergenic | 25.0% |
| ! | AACCATTATGTATTACTGTT+AGG | + | chr5_1:17634916-17634935 | None:intergenic | 25.0% |
| ! | GTTAATATTTGGAGAAGAAA+AGG | + | chr5_1:17635047-17635066 | None:intergenic | 25.0% |
| ! | CTGAAATAAAGAACCAAAAA+TGG | + | chr5_1:17635073-17635092 | None:intergenic | 25.0% |
| !! | TCAAATTGAGAACATTTTCA+TGG | - | chr5_1:17635150-17635169 | Msa0721190:intron | 25.0% |
| !! | CAAATTGAGAACATTTTCAT+GGG | - | chr5_1:17635151-17635170 | Msa0721190:intron | 25.0% |
| ! | CTCAAACATTATTGACAATA+TGG | - | chr5_1:17635347-17635366 | Msa0721190:intron | 25.0% |
| ! | TGAACTTTGTTGTAATTTGC+AGG | - | chr5_1:17631923-17631942 | Msa0721190:three_prime_UTR | 30.0% |
| ! | GAACTTTGTTGTAATTTGCA+GGG | - | chr5_1:17631924-17631943 | Msa0721190:three_prime_UTR | 30.0% |
| ! | AACTTTGTTGTAATTTGCAG+GGG | - | chr5_1:17631925-17631944 | Msa0721190:three_prime_UTR | 30.0% |
| TCAAGGAAAATCTGATTATC+AGG | - | chr5_1:17631982-17632001 | Msa0721190:three_prime_UTR | 30.0% | |
| ATCTGATTATCAGGATGTTA+TGG | - | chr5_1:17631991-17632010 | Msa0721190:three_prime_UTR | 30.0% | |
| !! | TACAGAGTGTTGTCAAATAA+CGG | + | chr5_1:17632642-17632661 | None:intergenic | 30.0% |
| TATTATATGTCGAAGAGAGT+AGG | - | chr5_1:17632750-17632769 | Msa0721190:intron | 30.0% | |
| GCATATGACTTTATGAGATA+TGG | - | chr5_1:17632776-17632795 | Msa0721190:intron | 30.0% | |
| ! | CTATCTTTTCTACTGAAGAA+TGG | + | chr5_1:17632982-17633001 | None:intergenic | 30.0% |
| CATTTGTGAAATAGACAAGA+TGG | - | chr5_1:17633003-17633022 | Msa0721190:intron | 30.0% | |
| TGACATACTATCATCTTACT+TGG | - | chr5_1:17633092-17633111 | Msa0721190:intron | 30.0% | |
| GACATACTATCATCTTACTT+GGG | - | chr5_1:17633093-17633112 | Msa0721190:intron | 30.0% | |
| ! | GTTAAGTTGTTTATCCAAAC+AGG | + | chr5_1:17633120-17633139 | None:intergenic | 30.0% |
| CTTATTCTCATAAATTCTCC+AGG | + | chr5_1:17633279-17633298 | None:intergenic | 30.0% | |
| AAACTATTTGCAAGAGTTCA+CGG | + | chr5_1:17633337-17633356 | None:intergenic | 30.0% | |
| TCTTGCAAATAGTTTCACAA+GGG | - | chr5_1:17633342-17633361 | Msa0721190:CDS | 30.0% | |
| TGAAGGAAAAAAAAAAGCGA+GGG | + | chr5_1:17633435-17633454 | None:intergenic | 30.0% | |
| TTGAAGGAAAAAAAAAAGCG+AGG | + | chr5_1:17633436-17633455 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCTTCGTCATG+CGG | - | chr5_1:17633497-17633516 | Msa0721190:intron | 30.0% |
| AGTGAAGTGATTAAGAAACA+TGG | + | chr5_1:17633703-17633722 | None:intergenic | 30.0% | |
| TCTTAATCACTTCACTGTTT+AGG | - | chr5_1:17633707-17633726 | Msa0721190:CDS | 30.0% | |
| CTTAATCACTTCACTGTTTA+GGG | - | chr5_1:17633708-17633727 | Msa0721190:CDS | 30.0% | |
| ! | AGGGATAACTTTTCTAATGA+TGG | - | chr5_1:17633727-17633746 | Msa0721190:CDS | 30.0% |
| AACTTATGATGCAGTTATTG+TGG | - | chr5_1:17633801-17633820 | Msa0721190:CDS | 30.0% | |
| TTCAGATATAGCATACCAAT+AGG | + | chr5_1:17633838-17633857 | None:intergenic | 30.0% | |
| CAACATTGTAATATGTGGAA+AGG | + | chr5_1:17634205-17634224 | None:intergenic | 30.0% | |
| ! | TTTAAGATTGCGGAAAATAG+CGG | - | chr5_1:17634230-17634249 | Msa0721190:intron | 30.0% |
| ACTATGCTTAAACACTTAAG+TGG | - | chr5_1:17634351-17634370 | Msa0721190:intron | 30.0% | |
| GTTTCAAATCAACTATCTAG+TGG | + | chr5_1:17634439-17634458 | None:intergenic | 30.0% | |
| !! | GTTGATTTGAAACTGCAAAA+TGG | - | chr5_1:17634446-17634465 | Msa0721190:CDS | 30.0% |
| TCAATCATCATCAGTCATAA+TGG | - | chr5_1:17634475-17634494 | Msa0721190:CDS | 30.0% | |
| ! | CTATAACATGCTTTTCGATT+AGG | - | chr5_1:17634608-17634627 | Msa0721190:intron | 30.0% |
| !! | GTCATCTTAGAGTTTGTTTT+AGG | + | chr5_1:17634890-17634909 | None:intergenic | 30.0% |
| ACCCTAACAGTAATACATAA+TGG | - | chr5_1:17634911-17634930 | Msa0721190:intron | 30.0% | |
| ! | AACATTTTCATGGGATTGAA+AGG | - | chr5_1:17635160-17635179 | Msa0721190:intron | 30.0% |
| ! | ACATTTTCATGGGATTGAAA+GGG | - | chr5_1:17635161-17635180 | Msa0721190:intron | 30.0% |
| TGGATCTATCGATCAATAAA+AGG | + | chr5_1:17635214-17635233 | None:intergenic | 30.0% | |
| TGAAAATGAGTTGTAGTTGA+TGG | - | chr5_1:17635303-17635322 | Msa0721190:CDS | 30.0% | |
| GTGGAAAAGATTCTGTTTCA+AGG | - | chr5_1:17631965-17631984 | Msa0721190:three_prime_UTR | 35.0% | |
| AACAGAACTAGTACAGTGAA+GGG | + | chr5_1:17632061-17632080 | None:intergenic | 35.0% | |
| AAACAGAACTAGTACAGTGA+AGG | + | chr5_1:17632062-17632081 | None:intergenic | 35.0% | |
| ! | GTTTTGTAGTCAGCAACATA+TGG | - | chr5_1:17632097-17632116 | Msa0721190:three_prime_UTR | 35.0% |
| !! | ATATGGCAAGGTTCTTGTTT+TGG | - | chr5_1:17632114-17632133 | Msa0721190:three_prime_UTR | 35.0% |
| !!! | TCAAATACCTTTTTGGGGTT+TGG | + | chr5_1:17632217-17632236 | None:intergenic | 35.0% |
| ATATGTAGATGGTTGCTTAG+AGG | - | chr5_1:17632364-17632383 | Msa0721190:intron | 35.0% | |
| ATGGTTGCTTAGAGGAATTT+GGG | - | chr5_1:17632372-17632391 | Msa0721190:intron | 35.0% | |
| ATATAAAACAAGTGTGCAGC+AGG | + | chr5_1:17632465-17632484 | None:intergenic | 35.0% | |
| CTTTAGCACTGTAGCATAAT+GGG | + | chr5_1:17632619-17632638 | None:intergenic | 35.0% | |
| TATTCGCTATTTGACAACAC+TGG | - | chr5_1:17632725-17632744 | Msa0721190:CDS | 35.0% | |
| ATACAAACCACTCTTGAGAA+TGG | - | chr5_1:17632805-17632824 | Msa0721190:intron | 35.0% | |
| TGGAATGTTGGATCATTACA+AGG | - | chr5_1:17632825-17632844 | Msa0721190:intron | 35.0% | |
| TTGAAAAGTTACGCAAGGAA+TGG | + | chr5_1:17632860-17632879 | None:intergenic | 35.0% | |
| CCTAACAGAAAATAGAAGTG+AGG | + | chr5_1:17632910-17632929 | None:intergenic | 35.0% | |
| ! | CCTCACTTCTATTTTCTGTT+AGG | - | chr5_1:17632907-17632926 | Msa0721190:intron | 35.0% |
| !! | TTCTGTTAGGTTTTGGTCAT+TGG | - | chr5_1:17632920-17632939 | Msa0721190:intron | 35.0% |
| !! | CGTGTTTTTATAAGTTGTCC+TGG | - | chr5_1:17633258-17633277 | Msa0721190:intron | 35.0% |
| CTCTTGCAAATAGTTTCACA+AGG | - | chr5_1:17633341-17633360 | Msa0721190:CDS | 35.0% | |
| AAGGAAAAAAAAAAGCGAGG+GGG | + | chr5_1:17633433-17633452 | None:intergenic | 35.0% | |
| GAAGGAAAAAAAAAAGCGAG+GGG | + | chr5_1:17633434-17633453 | None:intergenic | 35.0% | |
| !!! | TTTTTTTCCTTCAAGTTGGG+TGG | - | chr5_1:17633442-17633461 | Msa0721190:CDS | 35.0% |
| !!! | TTTTTTCCTTCAAGTTGGGT+GGG | - | chr5_1:17633443-17633462 | Msa0721190:CDS | 35.0% |
| TTGAAGTCTTCTTTCTTTGC+AGG | - | chr5_1:17633585-17633604 | Msa0721190:intron | 35.0% | |
| ! | TTTTTCCCTGATATAGCAGT+AGG | - | chr5_1:17633619-17633638 | Msa0721190:CDS | 35.0% |
| CAAAACCTACTGCTATATCA+GGG | + | chr5_1:17633627-17633646 | None:intergenic | 35.0% | |
| TCAAAACCTACTGCTATATC+AGG | + | chr5_1:17633628-17633647 | None:intergenic | 35.0% | |
| ! | TGATATAGCAGTAGGTTTTG+AGG | - | chr5_1:17633627-17633646 | Msa0721190:CDS | 35.0% |
| GGTTTGTCTTTCAATGATCT+AGG | - | chr5_1:17633748-17633767 | Msa0721190:CDS | 35.0% | |
| ! | TCTAGGAGTTGCATTTTTGA+AGG | - | chr5_1:17633765-17633784 | Msa0721190:CDS | 35.0% |
| ! | TTTTCAAAAAGCTCTTGAGC+AGG | + | chr5_1:17633946-17633965 | None:intergenic | 35.0% |
| !!! | TGAAAAGCCCTTTTTTGAGT+CGG | - | chr5_1:17633960-17633979 | Msa0721190:intron | 35.0% |
| GCTTCATATGCATATCATTG+AGG | - | chr5_1:17634038-17634057 | Msa0721190:intron | 35.0% | |
| AATTGTCGCCAAGTATTCAA+AGG | - | chr5_1:17634072-17634091 | Msa0721190:intron | 35.0% | |
| ATTGTGAAAGAACACACCTT+GGG | + | chr5_1:17634134-17634153 | None:intergenic | 35.0% | |
| AATTGTGAAAGAACACACCT+TGG | + | chr5_1:17634135-17634154 | None:intergenic | 35.0% | |
| ! | GTGTTTTGCAGAGTGTAAAT+GGG | + | chr5_1:17634171-17634190 | None:intergenic | 35.0% |
| ! | TGTGTTTTGCAGAGTGTAAA+TGG | + | chr5_1:17634172-17634191 | None:intergenic | 35.0% |
| CGAAATAGCATATCACAGAA+CGG | - | chr5_1:17634310-17634329 | Msa0721190:intron | 35.0% | |
| TGATCAGTGTTGTCAAATAG+CGG | + | chr5_1:17634385-17634404 | None:intergenic | 35.0% | |
| !!! | TCTTATTTTCTGTATCCTCC+TGG | - | chr5_1:17634519-17634538 | Msa0721190:intron | 35.0% |
| !! | TTTTGTTTCAGTGGGATGAT+TGG | - | chr5_1:17634671-17634690 | Msa0721190:intron | 35.0% |
| ! | TTTTATGCTTTGCTCAACTG+AGG | - | chr5_1:17634694-17634713 | Msa0721190:intron | 35.0% |
| TTTATGCTTTGCTCAACTGA+GGG | - | chr5_1:17634695-17634714 | Msa0721190:intron | 35.0% | |
| TTCTCATCAATAGGATTCAC+CGG | + | chr5_1:17634743-17634762 | None:intergenic | 35.0% | |
| TGGCTATCATTCTCATCAAT+AGG | + | chr5_1:17634752-17634771 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTAGGCCTCATTA+GGG | + | chr5_1:17634879-17634898 | None:intergenic | 35.0% |
| !!! | AGTTTGTTTTAGGCCTCATT+AGG | + | chr5_1:17634880-17634899 | None:intergenic | 35.0% |
| CAAAAACACAGTATGAGTGT+TGG | + | chr5_1:17635018-17635037 | None:intergenic | 35.0% | |
| TTTAGAAGCAATTGCTCTCT+TGG | + | chr5_1:17635130-17635149 | None:intergenic | 35.0% | |
| TTATTCCACGGTTCATTGAT+GGG | + | chr5_1:17635241-17635260 | None:intergenic | 35.0% | |
| TTTATTCCACGGTTCATTGA+TGG | + | chr5_1:17635242-17635261 | None:intergenic | 35.0% | |
| ! | TGAAGCACTACTTTATTCCA+CGG | + | chr5_1:17635253-17635272 | None:intergenic | 35.0% |
| !! | AGTTGATGGATTCAGTTCTT+AGG | - | chr5_1:17635317-17635336 | Msa0721190:intron | 35.0% |
| ! | TTTGTTGTAATTTGCAGGGG+AGG | - | chr5_1:17631928-17631947 | Msa0721190:three_prime_UTR | 40.0% |
| ACAGAACTAGTACAGTGAAG+GGG | + | chr5_1:17632060-17632079 | None:intergenic | 40.0% | |
| !!! | GCAAGGTTCTTGTTTTGGAT+GGG | - | chr5_1:17632119-17632138 | Msa0721190:three_prime_UTR | 40.0% |
| !!! | CAAGGTTCTTGTTTTGGATG+GGG | - | chr5_1:17632120-17632139 | Msa0721190:three_prime_UTR | 40.0% |
| GGTCATTCAGCTTACAGAAA+GGG | - | chr5_1:17632141-17632160 | Msa0721190:three_prime_UTR | 40.0% | |
| ATGAGTGATCATCTCTTGGT+AGG | + | chr5_1:17632176-17632195 | None:intergenic | 40.0% | |
| GAAGATGAGTGATCATCTCT+TGG | + | chr5_1:17632180-17632199 | None:intergenic | 40.0% | |
| CTCAATTCCAAACCCCAAAA+AGG | - | chr5_1:17632207-17632226 | Msa0721190:three_prime_UTR | 40.0% | |
| GATGGTTGCTTAGAGGAATT+TGG | - | chr5_1:17632371-17632390 | Msa0721190:intron | 40.0% | |
| CGTTACAGTGTTGTCAATCT+CGG | - | chr5_1:17632565-17632584 | Msa0721190:intron | 40.0% | |
| GTTACAGTGTTGTCAATCTC+GGG | - | chr5_1:17632566-17632585 | Msa0721190:intron | 40.0% | |
| GCTTTAGCACTGTAGCATAA+TGG | + | chr5_1:17632620-17632639 | None:intergenic | 40.0% | |
| CTGTATGAAATCACGTCTCA+CGG | - | chr5_1:17632657-17632676 | Msa0721190:CDS | 40.0% | |
| ACAGCAGCACTATAATGTAG+TGG | + | chr5_1:17632706-17632725 | None:intergenic | 40.0% | |
| ATATGTCGAAGAGAGTAGGA+AGG | - | chr5_1:17632754-17632773 | Msa0721190:intron | 40.0% | |
| CAACATTCCATTCTCAAGAG+TGG | + | chr5_1:17632815-17632834 | None:intergenic | 40.0% | |
| CACTCTTGAGAATGGAATGT+TGG | - | chr5_1:17632813-17632832 | Msa0721190:intron | 40.0% | |
| !! | TGTTAGGTTTTGGTCATTGG+TGG | - | chr5_1:17632923-17632942 | Msa0721190:intron | 40.0% |
| AGGAAAAAAAAAAGCGAGGG+GGG | + | chr5_1:17633432-17633451 | None:intergenic | 40.0% | |
| CCACGTGTGACACTTAATAT+CGG | - | chr5_1:17633652-17633671 | Msa0721190:CDS | 40.0% | |
| ACTGCATCATAAGTTCCTTC+TGG | + | chr5_1:17633796-17633815 | None:intergenic | 40.0% | |
| GTGGATTCATCTGATCCTAT+TGG | - | chr5_1:17633820-17633839 | Msa0721190:intron | 40.0% | |
| ! | CTTGCAACCGACTCAAAAAA+GGG | + | chr5_1:17633970-17633989 | None:intergenic | 40.0% |
| !!! | CTTTTTTGAGTCGGTTGCAA+GGG | - | chr5_1:17633969-17633988 | Msa0721190:intron | 40.0% |
| TGACAGAGCCTTTGAATACT+TGG | + | chr5_1:17634083-17634102 | None:intergenic | 40.0% | |
| AATATGTGGAAAGGATCGCA+GGG | + | chr5_1:17634196-17634215 | None:intergenic | 40.0% | |
| TAATATGTGGAAAGGATCGC+AGG | + | chr5_1:17634197-17634216 | None:intergenic | 40.0% | |
| AACCAACACAATTGATCTCC+AGG | + | chr5_1:17634540-17634559 | None:intergenic | 40.0% | |
| TTATGCTTTGCTCAACTGAG+GGG | - | chr5_1:17634696-17634715 | Msa0721190:intron | 40.0% | |
| !!! | TAAGGGAAGTTTTGGGGTAA+GGG | + | chr5_1:17634838-17634857 | None:intergenic | 40.0% |
| ! | TTTTAGGCCTCATTAGGGTT+TGG | + | chr5_1:17634874-17634893 | None:intergenic | 40.0% |
| ! | AACAAGGGCTTTAGTGACAT+AGG | - | chr5_1:17634952-17634971 | Msa0721190:intron | 40.0% |
| GCTTTAGTGACATAGGACTT+AGG | - | chr5_1:17634959-17634978 | Msa0721190:intron | 40.0% | |
| AAAAGACCCACAAACAAGTC+AGG | + | chr5_1:17634990-17635009 | None:intergenic | 40.0% | |
| ATTGCTCTCTTGGCAAAAGA+TGG | + | chr5_1:17635120-17635139 | None:intergenic | 40.0% | |
| TCAGGATGTTATGGTCTTCC+AGG | - | chr5_1:17632000-17632019 | Msa0721190:three_prime_UTR | 45.0% | |
| TAACTGAAGCTGCATGTACC+TGG | + | chr5_1:17632021-17632040 | None:intergenic | 45.0% | |
| GTAGTCAGCAACATATGGCA+AGG | - | chr5_1:17632102-17632121 | Msa0721190:three_prime_UTR | 45.0% | |
| !!! | GGCAAGGTTCTTGTTTTGGA+TGG | - | chr5_1:17632118-17632137 | Msa0721190:three_prime_UTR | 45.0% |
| GGGTCATTCAGCTTACAGAA+AGG | - | chr5_1:17632140-17632159 | Msa0721190:three_prime_UTR | 45.0% | |
| ! | GGGTTTGGAATTGAGCAAAG+AGG | + | chr5_1:17632202-17632221 | None:intergenic | 45.0% |
| TCTCGGGATGTGGAAAATAG+TGG | - | chr5_1:17632582-17632601 | Msa0721190:intron | 45.0% | |
| CACGCTTGAAAAGTTACGCA+AGG | + | chr5_1:17632865-17632884 | None:intergenic | 45.0% | |
| !! | TAGGTTTTGGTCATTGGTGG+AGG | - | chr5_1:17632926-17632945 | Msa0721190:intron | 45.0% |
| CATCTTACTTGGGTCCTGTT+TGG | - | chr5_1:17633103-17633122 | Msa0721190:intron | 45.0% | |
| GGAAAAAAAAAAGCGAGGGG+GGG | + | chr5_1:17633431-17633450 | None:intergenic | 45.0% | |
| AAGATACCCACCCAACTTGA+AGG | + | chr5_1:17633452-17633471 | None:intergenic | 45.0% | |
| CCGATATTAAGTGTCACACG+TGG | + | chr5_1:17633655-17633674 | None:intergenic | 45.0% | |
| GTGACACTTAATATCGGCGA+TGG | - | chr5_1:17633658-17633677 | Msa0721190:CDS | 45.0% | |
| !! | TTTTTGAAGGCAGCTCCAGA+AGG | - | chr5_1:17633778-17633797 | Msa0721190:CDS | 45.0% |
| ! | CCTTGCAACCGACTCAAAAA+AGG | + | chr5_1:17633971-17633990 | None:intergenic | 45.0% |
| !!! | CCTTTTTTGAGTCGGTTGCA+AGG | - | chr5_1:17633968-17633987 | Msa0721190:intron | 45.0% |
| ! | GTACTCAGGCGGAAAGTATA+TGG | - | chr5_1:17634016-17634035 | Msa0721190:intron | 45.0% |
| AAGGCTCTGTCAACTATGCT+TGG | - | chr5_1:17634091-17634110 | Msa0721190:intron | 45.0% | |
| TGTCAACTATGCTTGGACCA+CGG | - | chr5_1:17634098-17634117 | Msa0721190:intron | 45.0% | |
| AGAACACACCTTGGGTATGT+AGG | + | chr5_1:17634126-17634145 | None:intergenic | 45.0% | |
| GCAGAGTGTAAATGGGAAAG+TGG | + | chr5_1:17634164-17634183 | None:intergenic | 45.0% | |
| GCTATAGAATTGTCGCAGAG+CGG | + | chr5_1:17634268-17634287 | None:intergenic | 45.0% | |
| CAACACAATTGATCTCCAGG+AGG | + | chr5_1:17634537-17634556 | None:intergenic | 45.0% | |
| CTCCTGGAGATCAATTGTGT+TGG | - | chr5_1:17634535-17634554 | Msa0721190:intron | 45.0% | |
| ! | TTCGGTCGATTTCAAGCATC+CGG | - | chr5_1:17634721-17634740 | Msa0721190:intron | 45.0% |
| !!! | CTAAGGGAAGTTTTGGGGTA+AGG | + | chr5_1:17634839-17634858 | None:intergenic | 45.0% |
| ! | CAACGCTAAGGGAAGTTTTG+GGG | + | chr5_1:17634844-17634863 | None:intergenic | 45.0% |
| ! | CCAACGCTAAGGGAAGTTTT+GGG | + | chr5_1:17634845-17634864 | None:intergenic | 45.0% |
| ! | GCCTCATTAGGGTTTGGTTT+GGG | + | chr5_1:17634868-17634887 | None:intergenic | 45.0% |
| TAGTGACATAGGACTTAGGC+CGG | - | chr5_1:17634963-17634982 | Msa0721190:intron | 45.0% | |
| GCAAACAGAAAGCTGCTGAA+TGG | + | chr5_1:17635098-17635117 | None:intergenic | 45.0% | |
| !! | TGGGATTGAAAGGGTGCTTA+TGG | - | chr5_1:17635170-17635189 | Msa0721190:intron | 45.0% |
| !!! | TTATTATTATTTTTTTGTTT+AGG | - | chr5_1:17633919-17633938 | Msa0721190:intron | 5.0% |
| GTGTTGTCAATCTCGGGATG+TGG | - | chr5_1:17632572-17632591 | Msa0721190:intron | 50.0% | |
| CACGTCTCACGGAGTAATAG+TGG | - | chr5_1:17632668-17632687 | Msa0721190:CDS | 50.0% | |
| TTGGTCATTGGTGGAGGAGA+TGG | - | chr5_1:17632932-17632951 | Msa0721190:intron | 50.0% | |
| ! | GATTTTAGGCCGCATGACGA+AGG | + | chr5_1:17633509-17633528 | None:intergenic | 50.0% |
| TGAGTACACACAACACCTCC+TGG | + | chr5_1:17634003-17634022 | None:intergenic | 50.0% | |
| !! | AGGAGGTGTTGTGTGTACTC+AGG | - | chr5_1:17634002-17634021 | Msa0721190:intron | 50.0% |
| ! | AGGTGTTGTGTGTACTCAGG+CGG | - | chr5_1:17634005-17634024 | Msa0721190:intron | 50.0% |
| GGATGCTTGAAATCGACCGA+AGG | + | chr5_1:17634722-17634741 | None:intergenic | 50.0% | |
| GAGAATGATAGCCAGCATGC+AGG | - | chr5_1:17634758-17634777 | Msa0721190:intron | 50.0% | |
| TCAATGGTCTTCCTGCATGC+TGG | + | chr5_1:17634772-17634791 | None:intergenic | 50.0% | |
| CCCAAAACTTCCCTTAGCGT+TGG | - | chr5_1:17634842-17634861 | Msa0721190:intron | 50.0% | |
| ! | GCCAACGCTAAGGGAAGTTT+TGG | + | chr5_1:17634846-17634865 | None:intergenic | 50.0% |
| !! | TTGGTTTGGGCCAACGCTAA+GGG | + | chr5_1:17634855-17634874 | None:intergenic | 50.0% |
| !! | TTTGGTTTGGGCCAACGCTA+AGG | + | chr5_1:17634856-17634875 | None:intergenic | 50.0% |
| GCCCAAACCAAACCCTAATG+AGG | - | chr5_1:17634864-17634883 | Msa0721190:intron | 50.0% | |
| ! | GGCCTCATTAGGGTTTGGTT+TGG | + | chr5_1:17634869-17634888 | None:intergenic | 50.0% |
| ACCCACAAACAAGTCAGGAC+CGG | + | chr5_1:17634985-17635004 | None:intergenic | 50.0% | |
| ! | ACGGTTCATTGATGGGCAGA+TGG | + | chr5_1:17635234-17635253 | None:intergenic | 50.0% |
| ATCTGCCCATCAATGAACCG+TGG | - | chr5_1:17635233-17635252 | Msa0721190:CDS | 50.0% | |
| AGGGGAGGCTCACTCATTGA+AGG | - | chr5_1:17631943-17631962 | Msa0721190:three_prime_UTR | 55.0% | |
| GGAGGCTCACTCATTGAAGG+TGG | - | chr5_1:17631946-17631965 | Msa0721190:three_prime_UTR | 55.0% | |
| AGCAGGAGTTAGCACGGTGA+CGG | + | chr5_1:17632448-17632467 | None:intergenic | 55.0% | |
| GTGTGCAGCAGGAGTTAGCA+CGG | + | chr5_1:17632454-17632473 | None:intergenic | 55.0% | |
| GTCATTGGTGGAGGAGATGG+AGG | - | chr5_1:17632935-17632954 | Msa0721190:intron | 55.0% | |
| AATGGCGTGAAACTTCCCGC+AGG | + | chr5_1:17632964-17632983 | None:intergenic | 55.0% | |
| GGAGAGGCAGACTGAGACTA+GGG | + | chr5_1:17633410-17633429 | None:intergenic | 55.0% | |
| AAAAAAAGCGAGGGGGGGAG+AGG | + | chr5_1:17633426-17633445 | None:intergenic | 55.0% | |
| CCTTGGGTATGTAGGAACCG+TGG | + | chr5_1:17634118-17634137 | None:intergenic | 55.0% | |
| CCACGGTTCCTACATACCCA+AGG | - | chr5_1:17634115-17634134 | Msa0721190:intron | 55.0% | |
| TTGCTCAACTGAGGGGCCTT+CGG | - | chr5_1:17634703-17634722 | Msa0721190:intron | 55.0% | |
| !! | GCCGGTCCTGACTTGTTTGT+GGG | - | chr5_1:17634981-17635000 | Msa0721190:intron | 55.0% |
| GCAGGAGTTAGCACGGTGAC+GGG | + | chr5_1:17632447-17632466 | None:intergenic | 60.0% | |
| GAGGAGATGGAGGAGTCCTG+CGG | - | chr5_1:17632945-17632964 | Msa0721190:intron | 60.0% | |
| AGGAGATGGAGGAGTCCTGC+GGG | - | chr5_1:17632946-17632965 | Msa0721190:intron | 60.0% | |
| GGGAGAGGCAGACTGAGACT+AGG | + | chr5_1:17633411-17633430 | None:intergenic | 60.0% | |
| GTTGCAAGGGCTCTTCGTCC+AGG | - | chr5_1:17633982-17634001 | Msa0721190:intron | 60.0% | |
| !! | GGCCGGTCCTGACTTGTTTG+TGG | - | chr5_1:17634980-17634999 | Msa0721190:intron | 60.0% |
| GCAAGGGCTCTTCGTCCAGG+AGG | - | chr5_1:17633985-17634004 | Msa0721190:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 17631921 | 17635507 | 17631921 | ID=Msa0721190;Name=Msa0721190 |
| chr5_1 | mRNA | 17631921 | 17635507 | 17631921 | ID=Msa0721190-mRNA-1;Parent=Msa0721190;Name=Msa0721190-mRNA-1;_AED=0.14;_eAED=0.14;_QI=89|1|0.85|1|1|1|7|349|287 |
| chr5_1 | exon | 17631921 | 17632335 | 17631921 | ID=Msa0721190-mRNA-1:exon:6754;Parent=Msa0721190-mRNA-1 |
| chr5_1 | exon | 17632620 | 17632746 | 17632620 | ID=Msa0721190-mRNA-1:exon:6753;Parent=Msa0721190-mRNA-1 |
| chr5_1 | exon | 17633292 | 17633487 | 17633292 | ID=Msa0721190-mRNA-1:exon:6752;Parent=Msa0721190-mRNA-1 |
| chr5_1 | exon | 17633587 | 17633821 | 17633587 | ID=Msa0721190-mRNA-1:exon:6751;Parent=Msa0721190-mRNA-1 |
| chr5_1 | exon | 17634395 | 17634499 | 17634395 | ID=Msa0721190-mRNA-1:exon:6750;Parent=Msa0721190-mRNA-1 |
| chr5_1 | exon | 17635200 | 17635322 | 17635200 | ID=Msa0721190-mRNA-1:exon:6749;Parent=Msa0721190-mRNA-1 |
| chr5_1 | exon | 17635407 | 17635507 | 17635407 | ID=Msa0721190-mRNA-1:exon:6748;Parent=Msa0721190-mRNA-1 |
| chr5_1 | five_prime_UTR | 17635419 | 17635507 | 17635419 | ID=Msa0721190-mRNA-1:five_prime_utr;Parent=Msa0721190-mRNA-1 |
| chr5_1 | CDS | 17635407 | 17635418 | 17635407 | ID=Msa0721190-mRNA-1:cds;Parent=Msa0721190-mRNA-1 |
| chr5_1 | CDS | 17635200 | 17635322 | 17635200 | ID=Msa0721190-mRNA-1:cds;Parent=Msa0721190-mRNA-1 |
| chr5_1 | CDS | 17634395 | 17634499 | 17634395 | ID=Msa0721190-mRNA-1:cds;Parent=Msa0721190-mRNA-1 |
| chr5_1 | CDS | 17633587 | 17633821 | 17633587 | ID=Msa0721190-mRNA-1:cds;Parent=Msa0721190-mRNA-1 |
| chr5_1 | CDS | 17633292 | 17633487 | 17633292 | ID=Msa0721190-mRNA-1:cds;Parent=Msa0721190-mRNA-1 |
| chr5_1 | CDS | 17632620 | 17632746 | 17632620 | ID=Msa0721190-mRNA-1:cds;Parent=Msa0721190-mRNA-1 |
| chr5_1 | CDS | 17632270 | 17632335 | 17632270 | ID=Msa0721190-mRNA-1:cds;Parent=Msa0721190-mRNA-1 |
| chr5_1 | three_prime_UTR | 17631921 | 17632269 | 17631921 | ID=Msa0721190-mRNA-1:three_prime_utr;Parent=Msa0721190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
