Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842920 | AEX20346.1 | 99.709 | 344 | 1 | 0 | 1 | 344 | 1 | 344 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842920 | sp|Q9ZTR1|SPDS1_PEA | 92.105 | 342 | 18 | 2 | 3 | 344 | 2 | 334 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842920 | H2EIY6 | 99.709 | 344 | 1 | 0 | 1 | 344 | 1 | 344 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0842920 | 0.805603 | 1.232630e-49 | -8.615850e-47 |
| Msa0619980 | Msa0842920 | 0.802531 | 5.367693e-49 | -8.615850e-47 |
| Msa0721190 | Msa0842920 | 0.932489 | 7.884299e-95 | -8.615850e-47 |
| Msa0763580 | Msa0842920 | 0.924503 | 6.457467e-90 | -8.615850e-47 |
| Msa0134130 | Msa0842920 | 0.801616 | 8.279760e-49 | -8.615850e-47 |
| Msa0146470 | Msa0842920 | 0.802076 | 6.659093e-49 | -8.615850e-47 |
| Msa0388720 | Msa0842920 | 0.847380 | 1.199412e-59 | -8.615850e-47 |
| Msa0842920 | Msa0905550 | 0.808349 | 3.235826e-50 | -8.615850e-47 |
| Msa0842920 | Msa0937550 | 0.821946 | 3.080567e-53 | -8.615850e-47 |
| Msa0842920 | Msa0958020 | 0.813277 | 2.776494e-51 | -8.615850e-47 |
| Msa0842920 | Msa1106810 | 0.800975 | 1.119652e-48 | -8.615850e-47 |
| Msa0842920 | Msa1122160 | 0.812424 | 4.269393e-51 | -8.615850e-47 |
| Msa0842920 | Msa1150970 | 0.809474 | 1.858536e-50 | -8.615850e-47 |
| Msa0842920 | Msa1160570 | 0.823836 | 1.117693e-53 | -8.615850e-47 |
| Msa0842920 | Msa1210810 | 0.810826 | 9.503384e-51 | -8.615850e-47 |
| Msa0842920 | Msa1229700 | 0.804049 | 2.603006e-49 | -8.615850e-47 |
| Msa0842920 | Msa1272330 | 0.809976 | 1.449901e-50 | -8.615850e-47 |
| Msa0842920 | Msa1310290 | 0.802046 | 6.754018e-49 | -8.615850e-47 |
| Msa0842920 | Msa1374330 | 0.964987 | 5.039208e-124 | -8.615850e-47 |
| Msa0842920 | Msa1419850 | 0.827715 | 1.342285e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842920 | MtrunA17_Chr5g0413701 | 97.674 | 344 | 7 | 1 | 1 | 344 | 1 | 343 | 0.0 | 691 |
| Msa0842920 | MtrunA17_Chr8g0365071 | 81.089 | 349 | 51 | 3 | 3 | 344 | 2 | 342 | 0.0 | 581 |
| Msa0842920 | MtrunA17_Chr3g0117881 | 64.865 | 296 | 100 | 1 | 53 | 344 | 41 | 336 | 1.61e-151 | 429 |
| Msa0842920 | MtrunA17_Chr3g0126551 | 65.060 | 332 | 89 | 5 | 34 | 339 | 23 | 353 | 3.05e-149 | 424 |
| Msa0842920 | MtrunA17_Chr1g0158851 | 66.337 | 303 | 87 | 4 | 50 | 339 | 57 | 357 | 6.44e-141 | 404 |
| Msa0842920 | MtrunA17_Chr1g0150851 | 33.942 | 274 | 162 | 10 | 34 | 297 | 21 | 285 | 1.14e-39 | 143 |
| Msa0842920 | MtrunA17_Chr5g0394371 | 36.771 | 223 | 133 | 6 | 73 | 290 | 42 | 261 | 2.32e-38 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842920 | AT1G23820.1 | 79.880 | 333 | 64 | 2 | 12 | 344 | 5 | 334 | 0.0 | 556 |
| Msa0842920 | AT1G70310.1 | 79.403 | 335 | 61 | 3 | 14 | 344 | 10 | 340 | 0.0 | 545 |
| Msa0842920 | AT1G23820.2 | 80.297 | 269 | 51 | 1 | 12 | 280 | 49 | 315 | 3.21e-160 | 451 |
| Msa0842920 | AT5G53120.1 | 64.671 | 334 | 91 | 4 | 34 | 341 | 23 | 355 | 1.07e-148 | 423 |
| Msa0842920 | AT5G53120.4 | 64.671 | 334 | 91 | 4 | 34 | 341 | 23 | 355 | 1.07e-148 | 423 |
| Msa0842920 | AT5G53120.2 | 64.671 | 334 | 91 | 4 | 34 | 341 | 23 | 355 | 1.07e-148 | 423 |
| Msa0842920 | AT5G53120.5 | 64.671 | 334 | 91 | 4 | 34 | 341 | 23 | 355 | 1.07e-148 | 423 |
| Msa0842920 | AT5G53120.3 | 64.671 | 334 | 91 | 4 | 34 | 341 | 23 | 355 | 1.07e-148 | 423 |
| Msa0842920 | AT5G53120.7 | 64.671 | 334 | 91 | 4 | 34 | 341 | 40 | 372 | 3.63e-148 | 422 |
| Msa0842920 | AT5G53120.6 | 59.557 | 361 | 92 | 5 | 34 | 341 | 23 | 382 | 3.72e-144 | 413 |
| Msa0842920 | AT5G19530.2 | 31.900 | 279 | 169 | 8 | 70 | 343 | 40 | 302 | 7.41e-41 | 146 |
| Msa0842920 | AT5G19530.1 | 31.900 | 279 | 169 | 8 | 70 | 343 | 47 | 309 | 8.40e-41 | 146 |
Find 94 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGGTTGAGGTTCTTT+TGG | 0.239220 | 5_4:+20353530 | None:intergenic |
| CTCAAACATTATTGACAATA+TGG | 0.252304 | 5_4:-20348614 | Msa0842920:three_prime_UTR |
| TCAAGGAAAATCTGATTATC+AGG | 0.273203 | 5_4:-20351968 | Msa0842920:CDS |
| ATATGGCAAGGTTCTTGTTT+TGG | 0.280455 | 5_4:-20351836 | Msa0842920:CDS |
| CTCAATTCCAAACCCCAAAA+AGG | 0.285078 | 5_4:-20351743 | Msa0842920:intron |
| TCAAAACCTACTGCTATATC+AGG | 0.285866 | 5_4:+20350319 | None:intergenic |
| TGGGATTGAAAGGGTGCTTA+TGG | 0.300718 | 5_4:-20348791 | Msa0842920:three_prime_UTR |
| GGTTTATCTTCTGTTATTCC+TGG | 0.301003 | 5_4:-20353509 | Msa0842920:CDS |
| TTCTTCTCTTTGCCTCTTCA+AGG | 0.305491 | 5_4:+20353601 | None:intergenic |
| AGTTGATGGATTCAGTTCTT+AGG | 0.318848 | 5_4:-20348644 | Msa0842920:three_prime_UTR |
| TGGATCTATCGATCAATAAA+AGG | 0.320193 | 5_4:+20348750 | None:intergenic |
| TCTGCTGCTGCCGCCATGTT+TGG | 0.323278 | 5_4:+20353656 | None:intergenic |
| TCAGGATGTTATGGTCTTCC+AGG | 0.350984 | 5_4:-20351950 | Msa0842920:intron |
| TTGGTCATTGGTGGAGGAGA+TGG | 0.355582 | 5_4:-20351018 | Msa0842920:CDS |
| TTTAGAAGCAATTGCTCTCT+TGG | 0.357834 | 5_4:+20348834 | None:intergenic |
| ACTGCATCATAAGTTCCTTC+TGG | 0.359338 | 5_4:+20350151 | None:intergenic |
| TGAAAATGAGTTGTAGTTGA+TGG | 0.372784 | 5_4:-20348658 | Msa0842920:three_prime_UTR |
| ATCTGATTATCAGGATGTTA+TGG | 0.375563 | 5_4:-20351959 | Msa0842920:CDS |
| CCGCCATGTTTGGTTTGGTT+TGG | 0.381041 | 5_4:+20353666 | None:intergenic |
| TGCTGCCGCCATGTTTGGTT+TGG | 0.385140 | 5_4:+20353661 | None:intergenic |
| TATCTTCTGTTATTCCTGGC+TGG | 0.386803 | 5_4:-20353505 | Msa0842920:CDS |
| TGACAGAGCCTTTGAATACT+TGG | 0.386990 | 5_4:+20349867 | None:intergenic |
| TTGCTCAACTGAGGGGCCTT+CGG | 0.394265 | 5_4:-20349258 | Msa0842920:CDS |
| TTTATTCCACGGTTCATTGA+TGG | 0.394520 | 5_4:+20348722 | None:intergenic |
| GTGGATTCATCTGATCCTAT+TGG | 0.395416 | 5_4:-20350124 | Msa0842920:intron |
| GTTTGCAATGAAAATGAAGT+AGG | 0.420379 | 5_4:+20353688 | None:intergenic |
| ATAACAGAAGATAAACCATT+TGG | 0.430526 | 5_4:+20353515 | None:intergenic |
| GTACTCAGGCGGAAAGTATA+TGG | 0.432205 | 5_4:-20349931 | Msa0842920:CDS |
| GTGGAAAAGATTCTGTTTCA+AGG | 0.447500 | 5_4:-20351985 | Msa0842920:CDS |
| TTCGGTCGATTTCAAGCATC+CGG | 0.461644 | 5_4:-20349240 | Msa0842920:CDS |
| TGGCTATCATTCTCATCAAT+AGG | 0.466884 | 5_4:+20349212 | None:intergenic |
| TCAGAGTTGTAAAATTTCAA+TGG | 0.468115 | 5_4:+20349176 | None:intergenic |
| TGAGTACACACAACACCTCC+TGG | 0.469052 | 5_4:+20349947 | None:intergenic |
| AAAACGAACCAGGCCACATT+GGG | 0.470461 | 5_4:+20353468 | None:intergenic |
| GTTGCAAGGGCTCTTCGTCC+AGG | 0.475620 | 5_4:-20349965 | Msa0842920:CDS |
| TTTATGCTTTGCTCAACTGA+GGG | 0.479096 | 5_4:-20349266 | Msa0842920:CDS |
| TCTTCTCTTTGCCTCTTCAA+GGG | 0.480585 | 5_4:+20353602 | None:intergenic |
| GAAGATAAACCATTTGGTTG+AGG | 0.481438 | 5_4:+20353521 | None:intergenic |
| CCAAAAGAACCTCAACCAAA+TGG | 0.482653 | 5_4:-20353530 | Msa0842920:CDS |
| AACTTATGATGCAGTTATTG+TGG | 0.485527 | 5_4:-20350143 | Msa0842920:CDS |
| GTCATTGGTGGAGGAGATGG+AGG | 0.490380 | 5_4:-20351015 | Msa0842920:CDS |
| ATTGCTCTCTTGGCAAAAGA+TGG | 0.491734 | 5_4:+20348844 | None:intergenic |
| CCACGTGTGACACTTAATAT+CGG | 0.495007 | 5_4:-20350292 | Msa0842920:CDS |
| TCAATGGTCTTCCTGCATGC+TGG | 0.497270 | 5_4:+20349192 | None:intergenic |
| AAGGCTCTGTCAACTATGCT+TGG | 0.497721 | 5_4:-20349856 | Msa0842920:CDS |
| GAAATTAGCCCAATGTGGCC+TGG | 0.504538 | 5_4:-20353476 | Msa0842920:intron |
| TTTGCAATGAAAATGAAGTA+GGG | 0.513083 | 5_4:+20353689 | None:intergenic |
| TTCTCATCAATAGGATTCAC+CGG | 0.513261 | 5_4:+20349221 | None:intergenic |
| AGGGGAGGCTCACTCATTGA+AGG | 0.518756 | 5_4:-20352007 | Msa0842920:CDS |
| GGGAAGTCACTTGGTTCGTG+TGG | 0.520522 | 5_4:+20353709 | None:intergenic |
| TTATTCCACGGTTCATTGAT+GGG | 0.525894 | 5_4:+20348723 | None:intergenic |
| GCAAACAGAAAGCTGCTGAA+TGG | 0.526418 | 5_4:+20348866 | None:intergenic |
| AGAACACACCTTGGGTATGT+AGG | 0.534999 | 5_4:+20349824 | None:intergenic |
| AGGAGATGGAGGAGTCCTGC+GGG | 0.539206 | 5_4:-20351004 | Msa0842920:CDS |
| GAAGATGAGTGATCATCTCT+TGG | 0.542698 | 5_4:+20351773 | None:intergenic |
| GAAAACGAACCAGGCCACAT+TGG | 0.547905 | 5_4:+20353467 | None:intergenic |
| TGAAGCACTACTTTATTCCA+CGG | 0.553365 | 5_4:+20348711 | None:intergenic |
| ACGGTTCATTGATGGGCAGA+TGG | 0.560703 | 5_4:+20348730 | None:intergenic |
| AAACCAAACCAAACCAAACA+TGG | 0.561849 | 5_4:-20353669 | Msa0842920:exon |
| CTAATTTCAGAGAACCAGCC+AGG | 0.562845 | 5_4:+20353491 | None:intergenic |
| GGTCATTCAGCTCACAGAAA+GGG | 0.566371 | 5_4:-20351809 | Msa0842920:CDS |
| GGGTCATTCAGCTCACAGAA+AGG | 0.568875 | 5_4:-20351810 | Msa0842920:CDS |
| GAGAATGATAGCCAGCATGC+AGG | 0.575153 | 5_4:-20349203 | Msa0842920:CDS |
| GTAGTCAGCAACATATGGCA+AGG | 0.575663 | 5_4:-20351848 | Msa0842920:intron |
| CCTCTTCAAGGGAAAATCTG+TGG | 0.576006 | 5_4:+20353613 | None:intergenic |
| ATGAGTGATCATCTCTTGGT+AGG | 0.576912 | 5_4:+20351777 | None:intergenic |
| AAGGGAAAATCTGTGGACTC+AGG | 0.578610 | 5_4:+20353620 | None:intergenic |
| GGAAGTCACTTGGTTCGTGT+GGG | 0.581514 | 5_4:+20353710 | None:intergenic |
| GAGGAGATGGAGGAGTCCTG+CGG | 0.584086 | 5_4:-20351005 | Msa0842920:CDS |
| GCTTCATATGCATATCATTG+AGG | 0.585111 | 5_4:-20349909 | Msa0842920:CDS |
| AGGAGGTGTTGTGTGTACTC+AGG | 0.589734 | 5_4:-20349945 | Msa0842920:CDS |
| CATTTGTGAAATAGACAAGA+TGG | 0.590675 | 5_4:-20350947 | Msa0842920:CDS |
| CAAAACCTACTGCTATATCA+GGG | 0.592364 | 5_4:+20350320 | None:intergenic |
| AATTGTCGCCAAGTATTCAA+AGG | 0.594618 | 5_4:-20349875 | Msa0842920:CDS |
| GGGTTTGGAATTGAGCAAAG+TGG | 0.595482 | 5_4:+20351751 | None:intergenic |
| TTATGCTTTGCTCAACTGAG+GGG | 0.601606 | 5_4:-20349265 | Msa0842920:CDS |
| TGTCAACTATGCTTGGACCA+CGG | 0.611981 | 5_4:-20349849 | Msa0842920:CDS |
| GGAGGCTCACTCATTGAAGG+TGG | 0.624884 | 5_4:-20352004 | Msa0842920:CDS |
| AATGAAGTAGGGAAGTCACT+TGG | 0.628106 | 5_4:+20353700 | None:intergenic |
| GTGACACTTAATATCGGCGA+TGG | 0.629074 | 5_4:-20350286 | Msa0842920:intron |
| AGGTGTTGTGTGTACTCAGG+CGG | 0.646480 | 5_4:-20349942 | Msa0842920:CDS |
| ATCTGTGGACTCAGGAAGTG+TGG | 0.650713 | 5_4:+20353628 | None:intergenic |
| CCACGGTTCCTACATACCCA+AGG | 0.659865 | 5_4:-20349832 | Msa0842920:intron |
| ATCTGCCCATCAATGAACCG+TGG | 0.662440 | 5_4:-20348728 | Msa0842920:three_prime_UTR |
| GCAAGGGCTCTTCGTCCAGG+AGG | 0.667733 | 5_4:-20349962 | Msa0842920:CDS |
| AATGGCGTGAAACTTCCCGC+AGG | 0.668044 | 5_4:+20350989 | None:intergenic |
| GGATGCTTGAAATCGACCGA+AGG | 0.670797 | 5_4:+20349242 | None:intergenic |
| GTTTCAGAGACACCGTTGTG+AGG | 0.681469 | 5_4:+20353557 | None:intergenic |
| CCGATATTAAGTGTCACACG+TGG | 0.687158 | 5_4:+20350292 | None:intergenic |
| GCATATCATTGAGGACATCG+TGG | 0.705537 | 5_4:-20349900 | Msa0842920:CDS |
| TCTCTGAAATTAGCCCAATG+TGG | 0.705739 | 5_4:-20353481 | Msa0842920:CDS |
| CCTTGGGTATGTAGGAACCG+TGG | 0.729877 | 5_4:+20349832 | None:intergenic |
| CCAAACCAAACCAAACATGG+CGG | 0.741503 | 5_4:-20353666 | Msa0842920:exon |
| GAAGATCAACTACCTCACAA+CGG | 0.763149 | 5_4:-20353569 | Msa0842920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATATTTTTTTTTTA+AGG | - | chr5_4:20349044-20349063 | Msa0842920:intron | 0.0% |
| !!! | ATATTTTTTTTTTAAGGTTT+TGG | - | chr5_4:20349050-20349069 | Msa0842920:intron | 10.0% |
| !!! | TATTTTTTTTTTAAGGTTTT+GGG | - | chr5_4:20349051-20349070 | Msa0842920:intron | 10.0% |
| !!! | TTTTGATTATATGTAATATA+TGG | - | chr5_4:20349214-20349233 | Msa0842920:CDS | 10.0% |
| !!! | ACTTTTATTTTTTAAAATCA+CGG | - | chr5_4:20349680-20349699 | Msa0842920:intron | 10.0% |
| !!! | GATATGATTATTTTTTATTA+TGG | - | chr5_4:20352880-20352899 | Msa0842920:intron | 10.0% |
| !!! | ACACAAAAATATTGAATTTT+CGG | + | chr5_4:20348793-20348812 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGATGAAACTT+AGG | - | chr5_4:20348847-20348866 | Msa0842920:CDS | 15.0% |
| !!! | ATTTTTTTTTTAAGGTTTTG+GGG | - | chr5_4:20349052-20349071 | Msa0842920:intron | 15.0% |
| !! | TTATAATAATGACAAATCAT+GGG | + | chr5_4:20349979-20349998 | None:intergenic | 15.0% |
| !! | ATTATAATAATGACAAATCA+TGG | + | chr5_4:20349980-20349999 | None:intergenic | 15.0% |
| !! | ACATATACTAAATTATTAGA+GGG | + | chr5_4:20350509-20350528 | None:intergenic | 15.0% |
| !!! | TTTTAATCATTATATGTAGA+TGG | - | chr5_4:20350612-20350631 | Msa0842920:intron | 15.0% |
| !! | TAAAGACCATAAAAATTATA+AGG | + | chr5_4:20352129-20352148 | None:intergenic | 15.0% |
| !!! | TATAATTTTTATGGTCTTTA+CGG | - | chr5_4:20352129-20352148 | Msa0842920:intron | 15.0% |
| !!! | TTTTTATTTTTTTGTTTCAG+TGG | - | chr5_4:20352910-20352929 | Msa0842920:intron | 15.0% |
| !!! | TTTTATTTTTTTGTTTCAGT+GGG | - | chr5_4:20352911-20352930 | Msa0842920:intron | 15.0% |
| !!! | ATTTTTTAGAATCTAAAACA+AGG | - | chr5_4:20353184-20353203 | Msa0842920:intron | 15.0% |
| !!! | TTTTTTAGAATCTAAAACAA+GGG | - | chr5_4:20353185-20353204 | Msa0842920:intron | 15.0% |
| !!! | GAATTTTAACTTCAAAAAAT+AGG | + | chr5_4:20353654-20353673 | None:intergenic | 15.0% |
| !!! | CACAAAAATATTGAATTTTC+GGG | + | chr5_4:20348792-20348811 | None:intergenic | 20.0% |
| !!! | TAGGTTTAATTGTTGTTTAT+TGG | - | chr5_4:20348866-20348885 | Msa0842920:CDS | 20.0% |
| !!! | AGGTTTAATTGTTGTTTATT+GGG | - | chr5_4:20348867-20348886 | Msa0842920:CDS | 20.0% |
| !!! | TTGATTATGATTGTGTTTTT+AGG | - | chr5_4:20348997-20349016 | Msa0842920:intron | 20.0% |
| !!! | CAAAATTTTGACTAAAATTC+TGG | - | chr5_4:20349315-20349334 | Msa0842920:intron | 20.0% |
| !! | GTGAAAATAAATTTGAGAAA+TGG | + | chr5_4:20349455-20349474 | None:intergenic | 20.0% |
| !! | CAAGTAAAAACAATAACAAA+TGG | + | chr5_4:20349498-20349517 | None:intergenic | 20.0% |
| !!! | TATTGTTTTTACTTGCATAT+TGG | - | chr5_4:20349503-20349522 | Msa0842920:intron | 20.0% |
| !!! | AAAAGGTAATTGAATTTTCA+GGG | + | chr5_4:20349843-20349862 | None:intergenic | 20.0% |
| !!! | AAAGTATCAAATACCTTTTT+GGG | + | chr5_4:20350482-20350501 | None:intergenic | 20.0% |
| !! | GACATATACTAAATTATTAG+AGG | + | chr5_4:20350510-20350529 | None:intergenic | 20.0% |
| !! | AATTCAGGATAATAATTGTA+AGG | - | chr5_4:20350578-20350597 | Msa0842920:intron | 20.0% |
| !! | ACTTAAACGTAAATAATCTA+CGG | + | chr5_4:20350773-20350792 | None:intergenic | 20.0% |
| !! | TATAAATGTAAGTGTTAAGT+TGG | + | chr5_4:20351395-20351414 | None:intergenic | 20.0% |
| !!! | AATAAGCTAAAAACAGTTTT+TGG | - | chr5_4:20351555-20351574 | Msa0842920:intron | 20.0% |
| !!! | TTTTTTTTTTTCCTTCAAGT+TGG | - | chr5_4:20351702-20351721 | Msa0842920:intron | 20.0% |
| !!! | TTTTTTTTTTCCTTCAAGTT+GGG | - | chr5_4:20351703-20351722 | Msa0842920:intron | 20.0% |
| !!! | TGTTGTTAATTTTAAGATTG+CGG | - | chr5_4:20352482-20352501 | Msa0842920:intron | 20.0% |
| !! | AAAAATGGAGAGTTAATATT+TGG | + | chr5_4:20353306-20353325 | None:intergenic | 20.0% |
| !!! | AAATATTAACTCTCCATTTT+TGG | - | chr5_4:20353305-20353324 | Msa0842920:intron | 20.0% |
| ! | TTTGCAATGAAAATGAAGTA+GGG | + | chr5_4:20348523-20348542 | None:intergenic | 25.0% |
| ! | ATAACAGAAGATAAACCATT+TGG | + | chr5_4:20348697-20348716 | None:intergenic | 25.0% |
| !!! | AATATTGAATTTTCGGGAAA+AGG | + | chr5_4:20348786-20348805 | None:intergenic | 25.0% |
| ! | TTATGCTGATAAATGAACAA+GGG | + | chr5_4:20348816-20348835 | None:intergenic | 25.0% |
| ! | TTTATGCTGATAAATGAACA+AGG | + | chr5_4:20348817-20348836 | None:intergenic | 25.0% |
| ! | TCCCTAAATTCAAGAAAAAA+GGG | + | chr5_4:20349085-20349104 | None:intergenic | 25.0% |
| ! | TTCCCTAAATTCAAGAAAAA+AGG | + | chr5_4:20349086-20349105 | None:intergenic | 25.0% |
| !! | ATTAATTTTGCTCTTCAAGA+TGG | - | chr5_4:20349147-20349166 | Msa0842920:intron | 25.0% |
| !! | ATTTTCATCAATCAAGGATT+TGG | - | chr5_4:20349241-20349260 | Msa0842920:CDS | 25.0% |
| !! | TTTTCATCAATCAAGGATTT+GGG | - | chr5_4:20349242-20349261 | Msa0842920:CDS | 25.0% |
| ! | TAGCAGTACTATTGTAATAT+AGG | + | chr5_4:20349290-20349309 | None:intergenic | 25.0% |
| ! | GTAGATAGTAGAAATTTGAT+TGG | - | chr5_4:20349387-20349406 | Msa0842920:intron | 25.0% |
| ! | TACTTGCATATTGGATTTAA+TGG | - | chr5_4:20349512-20349531 | Msa0842920:intron | 25.0% |
| ! | AGAAACATTGAATCTCATAT+TGG | - | chr5_4:20349588-20349607 | Msa0842920:intron | 25.0% |
| ! | TAAGAACATGTGATTAATGA+TGG | + | chr5_4:20349748-20349767 | None:intergenic | 25.0% |
| !! | CAAAAGGTAATTGAATTTTC+AGG | + | chr5_4:20349844-20349863 | None:intergenic | 25.0% |
| !! | ATTTGGTATGGTTTATGTTT+TGG | - | chr5_4:20350023-20350042 | Msa0842920:intron | 25.0% |
| ! | TTTCTAATAAGACTTTGCTT+TGG | + | chr5_4:20350128-20350147 | None:intergenic | 25.0% |
| !! | AAGTATCAAATACCTTTTTG+GGG | + | chr5_4:20350481-20350500 | None:intergenic | 25.0% |
| !!! | CAAAGTATCAAATACCTTTT+TGG | + | chr5_4:20350483-20350502 | None:intergenic | 25.0% |
| !! | ATTGACTTTCTTATGTAGTT+TGG | - | chr5_4:20350548-20350567 | Msa0842920:intron | 25.0% |
| ! | TAGTTTGGCAAAAAAAATTC+AGG | - | chr5_4:20350563-20350582 | Msa0842920:intron | 25.0% |
| ! | AATGTCTATATTGAATCTCT+TGG | - | chr5_4:20350659-20350678 | Msa0842920:intron | 25.0% |
| ! | GTAGATTATTTACGTTTAAG+TGG | - | chr5_4:20350772-20350791 | Msa0842920:intron | 25.0% |
| !! | TTCTATTTTCTGTTAGGTTT+TGG | - | chr5_4:20351172-20351191 | Msa0842920:intron | 25.0% |
| ! | AAAAAAAACACAGCAATAAG+CGG | + | chr5_4:20351748-20351767 | None:intergenic | 25.0% |
| !! | CTTTGCACAAAATAGATTTT+AGG | + | chr5_4:20351788-20351807 | None:intergenic | 25.0% |
| ! | TATATCAGGGAAAAATTGTT+TGG | + | chr5_4:20351879-20351898 | None:intergenic | 25.0% |
| ! | TTCAGATATATCATACCAAT+AGG | + | chr5_4:20352103-20352122 | None:intergenic | 25.0% |
| !! | GAAACGCCTTATAATTTTTA+TGG | - | chr5_4:20352120-20352139 | Msa0842920:intron | 25.0% |
| !! | TATAACATGCTTTTCGATTA+GGG | - | chr5_4:20352858-20352877 | Msa0842920:intron | 25.0% |
| ! | TCAGAGTTGTAAAATTTCAA+TGG | + | chr5_4:20353036-20353055 | None:intergenic | 25.0% |
| !! | ATTGAAATTTTACAACTCTG+AGG | - | chr5_4:20353035-20353054 | Msa0842920:intron | 25.0% |
| ! | ACCATTATGTATTACTGTTA+GGG | + | chr5_4:20353163-20353182 | None:intergenic | 25.0% |
| ! | AACCATTATGTATTACTGTT+AGG | + | chr5_4:20353164-20353183 | None:intergenic | 25.0% |
| ! | GTTAATATTTGGAGAAGAAA+AGG | + | chr5_4:20353295-20353314 | None:intergenic | 25.0% |
| ! | CTGAAATAAAGAACCAAAAA+TGG | + | chr5_4:20353321-20353340 | None:intergenic | 25.0% |
| !! | TCAAATTGAGAACATTTTCA+TGG | - | chr5_4:20353398-20353417 | Msa0842920:intron | 25.0% |
| !! | CAAATTGAGAACATTTTCAT+GGG | - | chr5_4:20353399-20353418 | Msa0842920:intron | 25.0% |
| ! | CTCAAACATTATTGACAATA+TGG | - | chr5_4:20353595-20353614 | Msa0842920:CDS | 25.0% |
| GTTTGCAATGAAAATGAAGT+AGG | + | chr5_4:20348524-20348543 | None:intergenic | 30.0% | |
| !! | AATTGTTGTTTATTGGGTCA+TGG | - | chr5_4:20348873-20348892 | Msa0842920:intron | 30.0% |
| !! | TGAAAGTATCAATTTCTCTG+TGG | - | chr5_4:20348967-20348986 | Msa0842920:intron | 30.0% |
| !!! | AGCCCTTTTTTCTTGAATTT+AGG | - | chr5_4:20349080-20349099 | Msa0842920:intron | 30.0% |
| !!! | GCCCTTTTTTCTTGAATTTA+GGG | - | chr5_4:20349081-20349100 | Msa0842920:intron | 30.0% |
| TTGAATCTCATATTGGTCAT+AGG | - | chr5_4:20349595-20349614 | Msa0842920:intron | 30.0% | |
| TGAATCTCATATTGGTCATA+GGG | - | chr5_4:20349596-20349615 | Msa0842920:intron | 30.0% | |
| TTAACTCTTTGATCAGTTGT+AGG | - | chr5_4:20349891-20349910 | Msa0842920:CDS | 30.0% | |
| TATATTTCGCTGCAAACATT+TGG | - | chr5_4:20350006-20350025 | Msa0842920:CDS | 30.0% | |
| !!! | CGAGATTTTGGTTTTCTTTA+AGG | - | chr5_4:20350085-20350104 | Msa0842920:intron | 30.0% |
| !! | GTATTTTTACAAAAGTGTGC+AGG | + | chr5_4:20350153-20350172 | None:intergenic | 30.0% |
| ! | TGAACTTTGTTGTAATTTGC+AGG | - | chr5_4:20350182-20350201 | Msa0842920:intron | 30.0% |
| ! | GAACTTTGTTGTAATTTGCA+GGG | - | chr5_4:20350183-20350202 | Msa0842920:intron | 30.0% |
| ! | AACTTTGTTGTAATTTGCAG+GGG | - | chr5_4:20350184-20350203 | Msa0842920:intron | 30.0% |
| TCAAGGAAAATCTGATTATC+AGG | - | chr5_4:20350241-20350260 | Msa0842920:intron | 30.0% | |
| ATCTGATTATCAGGATGTTA+TGG | - | chr5_4:20350250-20350269 | Msa0842920:intron | 30.0% | |
| AACAGAACTAGTACTATGAA+GGG | + | chr5_4:20350320-20350339 | None:intergenic | 30.0% | |
| AAACAGAACTAGTACTATGA+AGG | + | chr5_4:20350321-20350340 | None:intergenic | 30.0% | |
| TATTATATGTCGAAGAGAGT+AGG | - | chr5_4:20351009-20351028 | Msa0842920:CDS | 30.0% | |
| ! | CTATCTTTTCTACTGAAGAA+TGG | + | chr5_4:20351241-20351260 | None:intergenic | 30.0% |
| CATTTGTGAAATAGACAAGA+TGG | - | chr5_4:20351262-20351281 | Msa0842920:intron | 30.0% | |
| TGACATACTATCATCTTACT+TGG | - | chr5_4:20351354-20351373 | Msa0842920:intron | 30.0% | |
| GACATACTATCATCTTACTT+GGG | - | chr5_4:20351355-20351374 | Msa0842920:intron | 30.0% | |
| CTTATTCTCATAAATTCTCC+AGG | + | chr5_4:20351541-20351560 | None:intergenic | 30.0% | |
| AAGGAAAAAAAAAAAGCGAG+GGG | + | chr5_4:20351697-20351716 | None:intergenic | 30.0% | |
| GAAGGAAAAAAAAAAAGCGA+GGG | + | chr5_4:20351698-20351717 | None:intergenic | 30.0% | |
| TGAAGGAAAAAAAAAAAGCG+AGG | + | chr5_4:20351699-20351718 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCTTCGTCATG+CGG | - | chr5_4:20351762-20351781 | Msa0842920:CDS | 30.0% |
| AGTGAAGTGATTAAGAAACA+TGG | + | chr5_4:20351968-20351987 | None:intergenic | 30.0% | |
| TCTTAATCACTTCACTGTTT+AGG | - | chr5_4:20351972-20351991 | Msa0842920:CDS | 30.0% | |
| CTTAATCACTTCACTGTTTA+GGG | - | chr5_4:20351973-20351992 | Msa0842920:CDS | 30.0% | |
| ! | AGGGATAACTTTTCTAATGA+TGG | - | chr5_4:20351992-20352011 | Msa0842920:CDS | 30.0% |
| AACTTATGATGCAGTTATTG+TGG | - | chr5_4:20352066-20352085 | Msa0842920:intron | 30.0% | |
| ! | TTTAAGATTGCGGAAAATAG+CGG | - | chr5_4:20352492-20352511 | Msa0842920:intron | 30.0% |
| ACTATGCTTAAACACTTAAG+TGG | - | chr5_4:20352613-20352632 | Msa0842920:intron | 30.0% | |
| GTTTCAAATCAACTATCTAG+TGG | + | chr5_4:20352701-20352720 | None:intergenic | 30.0% | |
| !! | GTTGATTTGAAACTGCAAAA+TGG | - | chr5_4:20352708-20352727 | Msa0842920:intron | 30.0% |
| TCAATCATCATCAGTCATAA+TGG | - | chr5_4:20352737-20352756 | Msa0842920:intron | 30.0% | |
| !!! | TCTTATTTTCTGTATCCTCT+TGG | - | chr5_4:20352781-20352800 | Msa0842920:intron | 30.0% |
| GAATACATAACCAACACAAT+TGG | + | chr5_4:20352810-20352829 | None:intergenic | 30.0% | |
| ! | CTATAACATGCTTTTCGATT+AGG | - | chr5_4:20352857-20352876 | Msa0842920:intron | 30.0% |
| !! | GTCATCTTAGAGTTTGTTTT+AGG | + | chr5_4:20353138-20353157 | None:intergenic | 30.0% |
| ACCCTAACAGTAATACATAA+TGG | - | chr5_4:20353159-20353178 | Msa0842920:intron | 30.0% | |
| ! | AACATTTTCATGGGATTGAA+AGG | - | chr5_4:20353408-20353427 | Msa0842920:intron | 30.0% |
| ! | ACATTTTCATGGGATTGAAA+GGG | - | chr5_4:20353409-20353428 | Msa0842920:intron | 30.0% |
| TGGATCTATCGATCAATAAA+AGG | + | chr5_4:20353462-20353481 | None:intergenic | 30.0% | |
| TGAAAATGAGTTGTAGTTGA+TGG | - | chr5_4:20353551-20353570 | Msa0842920:CDS | 30.0% | |
| AAACCAAACCAAACCAAACA+TGG | - | chr5_4:20348540-20348559 | Msa0842920:three_prime_UTR | 35.0% | |
| GAAGATAAACCATTTGGTTG+AGG | + | chr5_4:20348691-20348710 | None:intergenic | 35.0% | |
| GGTTTATCTTCTGTTATTCC+TGG | - | chr5_4:20348700-20348719 | Msa0842920:three_prime_UTR | 35.0% | |
| TTTCGGGAAAAGGAAGAAAA+GGG | + | chr5_4:20348776-20348795 | None:intergenic | 35.0% | |
| !! | TTTTCGGGAAAAGGAAGAAA+AGG | + | chr5_4:20348777-20348796 | None:intergenic | 35.0% |
| ! | TTTTGCTCTTCAAGATGGAT+TGG | - | chr5_4:20349152-20349171 | Msa0842920:intron | 35.0% |
| ! | GGACACATTTTCATCAATCA+AGG | - | chr5_4:20349235-20349254 | Msa0842920:CDS | 35.0% |
| TTTCAGCTTTCAACCTCAAA+AGG | + | chr5_4:20349548-20349567 | None:intergenic | 35.0% | |
| AATGTTTCTCTCACAAGACA+TGG | + | chr5_4:20349577-20349596 | None:intergenic | 35.0% | |
| CTGAGCTACTTAAGAACAAA+AGG | + | chr5_4:20349860-20349879 | None:intergenic | 35.0% | |
| TTTGTTCTTAAGTAGCTCAG+TGG | - | chr5_4:20349860-20349879 | Msa0842920:CDS | 35.0% | |
| AGTTGTAGGTTCTTTCTCAT+TGG | - | chr5_4:20349905-20349924 | Msa0842920:CDS | 35.0% | |
| AATGACAAATCATGGGAACT+GGG | + | chr5_4:20349972-20349991 | None:intergenic | 35.0% | |
| TAATGACAAATCATGGGAAC+TGG | + | chr5_4:20349973-20349992 | None:intergenic | 35.0% | |
| TTGGTTGAATATGCATATGC+TGG | - | chr5_4:20350042-20350061 | Msa0842920:intron | 35.0% | |
| ! | GAAGTAGATCTTCGAGATTT+TGG | - | chr5_4:20350073-20350092 | Msa0842920:intron | 35.0% |
| GTGGAAAAGATTCTGTTTCA+AGG | - | chr5_4:20350224-20350243 | Msa0842920:intron | 35.0% | |
| ACAGAACTAGTACTATGAAG+GGG | + | chr5_4:20350319-20350338 | None:intergenic | 35.0% | |
| ! | GTTTTGTAGTCAGCAACATA+TGG | - | chr5_4:20350356-20350375 | Msa0842920:intron | 35.0% |
| !! | ATATGGCAAGGTTCTTGTTT+TGG | - | chr5_4:20350373-20350392 | Msa0842920:intron | 35.0% |
| !!! | TCAAATACCTTTTTGGGGTT+TGG | + | chr5_4:20350476-20350495 | None:intergenic | 35.0% |
| ATATGTAGATGGTTGCTTAG+AGG | - | chr5_4:20350623-20350642 | Msa0842920:intron | 35.0% | |
| ATGGTTGCTTAGAGGAATTT+GGG | - | chr5_4:20350631-20350650 | Msa0842920:intron | 35.0% | |
| ATATAAAACAAGTGTGCAGC+AGG | + | chr5_4:20350724-20350743 | None:intergenic | 35.0% | |
| CTTTAGCACTGTAGCATAAT+GGG | + | chr5_4:20350878-20350897 | None:intergenic | 35.0% | |
| !! | TGCAGAGTGTTGTCAAATAA+CGG | + | chr5_4:20350901-20350920 | None:intergenic | 35.0% |
| TATTCGCTATTTGACAACAC+TGG | - | chr5_4:20350984-20351003 | Msa0842920:CDS | 35.0% | |
| ATACAAACCACTCTTGAGAA+TGG | - | chr5_4:20351064-20351083 | Msa0842920:intron | 35.0% | |
| TGGAATGTTGGATCATTACA+AGG | - | chr5_4:20351084-20351103 | Msa0842920:intron | 35.0% | |
| TTGAAAAGTTACGCAAGGAA+TGG | + | chr5_4:20351119-20351138 | None:intergenic | 35.0% | |
| CCTAACAGAAAATAGAAGTG+AGG | + | chr5_4:20351169-20351188 | None:intergenic | 35.0% | |
| ! | CCTCACTTCTATTTTCTGTT+AGG | - | chr5_4:20351166-20351185 | Msa0842920:intron | 35.0% |
| !! | TTCTGTTAGGTTTTGGTCAT+TGG | - | chr5_4:20351179-20351198 | Msa0842920:intron | 35.0% |
| !! | GTTAAGTTGGTTATCCAAAC+AGG | + | chr5_4:20351382-20351401 | None:intergenic | 35.0% |
| !! | CGTGTTTTTATAAGTTGTCC+TGG | - | chr5_4:20351520-20351539 | Msa0842920:intron | 35.0% |
| AACTATTTGCCAAGAGTTCA+CGG | + | chr5_4:20351599-20351618 | None:intergenic | 35.0% | |
| TCTTGGCAAATAGTTTCACA+AGG | - | chr5_4:20351604-20351623 | Msa0842920:intron | 35.0% | |
| CTTGGCAAATAGTTTCACAA+GGG | - | chr5_4:20351605-20351624 | Msa0842920:intron | 35.0% | |
| AGGAAAAAAAAAAAGCGAGG+GGG | + | chr5_4:20351696-20351715 | None:intergenic | 35.0% | |
| !!! | TTTTTTTCCTTCAAGTTGGG+TGG | - | chr5_4:20351706-20351725 | Msa0842920:intron | 35.0% |
| !!! | TTTTTTCCTTCAAGTTGGGT+GGG | - | chr5_4:20351707-20351726 | Msa0842920:intron | 35.0% |
| TTGAAGTCTTCTTTCTTTGC+AGG | - | chr5_4:20351850-20351869 | Msa0842920:intron | 35.0% | |
| ! | TTTTTCCCTGATATAGCAGT+AGG | - | chr5_4:20351884-20351903 | Msa0842920:intron | 35.0% |
| CAAAACCTACTGCTATATCA+GGG | + | chr5_4:20351892-20351911 | None:intergenic | 35.0% | |
| TCAAAACCTACTGCTATATC+AGG | + | chr5_4:20351893-20351912 | None:intergenic | 35.0% | |
| ! | TGATATAGCAGTAGGTTTTG+AGG | - | chr5_4:20351892-20351911 | Msa0842920:intron | 35.0% |
| GGTTTGTCTTTCAATGATCT+AGG | - | chr5_4:20352013-20352032 | Msa0842920:intron | 35.0% | |
| ! | TCTAGGAGTTGCATTTTTGA+AGG | - | chr5_4:20352030-20352049 | Msa0842920:intron | 35.0% |
| ! | TTTTCAAAAAGCTCTTGAGC+AGG | + | chr5_4:20352208-20352227 | None:intergenic | 35.0% |
| !!! | TGAAAAGCCCTTTTTTGAGT+CGG | - | chr5_4:20352222-20352241 | Msa0842920:intron | 35.0% |
| GCTTCATATGCATATCATTG+AGG | - | chr5_4:20352300-20352319 | Msa0842920:intron | 35.0% | |
| AATTGTCGCCAAGTATTCAA+AGG | - | chr5_4:20352334-20352353 | Msa0842920:intron | 35.0% | |
| ATTGTGAAAGAACACACCTT+GGG | + | chr5_4:20352396-20352415 | None:intergenic | 35.0% | |
| AATTGTGAAAGAACACACCT+TGG | + | chr5_4:20352397-20352416 | None:intergenic | 35.0% | |
| ! | GTGTTTTGCAGAGTGTAAAT+GGG | + | chr5_4:20352433-20352452 | None:intergenic | 35.0% |
| ! | TGTGTTTTGCAGAGTGTAAA+TGG | + | chr5_4:20352434-20352453 | None:intergenic | 35.0% |
| AATATGTGGAAAGGATCACA+GGG | + | chr5_4:20352458-20352477 | None:intergenic | 35.0% | |
| TAATATGTGGAAAGGATCAC+AGG | + | chr5_4:20352459-20352478 | None:intergenic | 35.0% | |
| CGAAATAGCATATCACAGAA+CGG | - | chr5_4:20352572-20352591 | Msa0842920:intron | 35.0% | |
| TGATCAGTGTTGTCAAATAG+CGG | + | chr5_4:20352647-20352666 | None:intergenic | 35.0% | |
| !! | TTTTGTTTCAGTGGGATGAT+TGG | - | chr5_4:20352919-20352938 | Msa0842920:intron | 35.0% |
| ! | TTTTATGCTTTGCTCAACTG+AGG | - | chr5_4:20352942-20352961 | Msa0842920:intron | 35.0% |
| TTTATGCTTTGCTCAACTGA+GGG | - | chr5_4:20352943-20352962 | Msa0842920:intron | 35.0% | |
| TTCTCATCAATAGGATTCAC+CGG | + | chr5_4:20352991-20353010 | None:intergenic | 35.0% | |
| TGGCTATCATTCTCATCAAT+AGG | + | chr5_4:20353000-20353019 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTAGGCCTCATTA+GGG | + | chr5_4:20353127-20353146 | None:intergenic | 35.0% |
| !!! | AGTTTGTTTTAGGCCTCATT+AGG | + | chr5_4:20353128-20353147 | None:intergenic | 35.0% |
| CAAAAACACAGTATGAGTGT+TGG | + | chr5_4:20353266-20353285 | None:intergenic | 35.0% | |
| TTTAGAAGCAATTGCTCTCT+TGG | + | chr5_4:20353378-20353397 | None:intergenic | 35.0% | |
| TTATTCCACGGTTCATTGAT+GGG | + | chr5_4:20353489-20353508 | None:intergenic | 35.0% | |
| TTTATTCCACGGTTCATTGA+TGG | + | chr5_4:20353490-20353509 | None:intergenic | 35.0% | |
| ! | TGAAGCACTACTTTATTCCA+CGG | + | chr5_4:20353501-20353520 | None:intergenic | 35.0% |
| !! | AGTTGATGGATTCAGTTCTT+AGG | - | chr5_4:20353565-20353584 | Msa0842920:CDS | 35.0% |
| AATGAAGTAGGGAAGTCACT+TGG | + | chr5_4:20348512-20348531 | None:intergenic | 40.0% | |
| TCTTCTCTTTGCCTCTTCAA+GGG | + | chr5_4:20348610-20348629 | None:intergenic | 40.0% | |
| TTCTTCTCTTTGCCTCTTCA+AGG | + | chr5_4:20348611-20348630 | None:intergenic | 40.0% | |
| GAAGATCAACTACCTCACAA+CGG | - | chr5_4:20348640-20348659 | Msa0842920:three_prime_UTR | 40.0% | |
| ! | CCATTTGGTTGAGGTTCTTT+TGG | + | chr5_4:20348682-20348701 | None:intergenic | 40.0% |
| CCAAAAGAACCTCAACCAAA+TGG | - | chr5_4:20348679-20348698 | Msa0842920:three_prime_UTR | 40.0% | |
| TATCTTCTGTTATTCCTGGC+TGG | - | chr5_4:20348704-20348723 | Msa0842920:three_prime_UTR | 40.0% | |
| !! | TCTCTGAAATTAGCCCAATG+TGG | - | chr5_4:20348728-20348747 | Msa0842920:three_prime_UTR | 40.0% |
| GTCATAAGAGAAAACGAACC+AGG | + | chr5_4:20348754-20348773 | None:intergenic | 40.0% | |
| TGATTGTCAGCTGTTAGTTG+TGG | - | chr5_4:20348913-20348932 | Msa0842920:intron | 40.0% | |
| ! | TGGTATAGTGTCACCTTTTG+AGG | - | chr5_4:20349532-20349551 | Msa0842920:intron | 40.0% |
| TATTGGTCATAGGGTGAAAG+TGG | - | chr5_4:20349605-20349624 | Msa0842920:intron | 40.0% | |
| TATGTTTGGATGGAGGGTTT+AGG | - | chr5_4:20349645-20349664 | Msa0842920:intron | 40.0% | |
| !! | TTTTCAGGGTCTGTTTCAGA+GGG | + | chr5_4:20349829-20349848 | None:intergenic | 40.0% |
| !! | ATTTTCAGGGTCTGTTTCAG+AGG | + | chr5_4:20349830-20349849 | None:intergenic | 40.0% |
| TTCGCTGCAAACATTTGGTA+TGG | - | chr5_4:20350011-20350030 | Msa0842920:intron | 40.0% | |
| ! | TTTGTTGTAATTTGCAGGGG+AGG | - | chr5_4:20350187-20350206 | Msa0842920:intron | 40.0% |
| !!! | GCAAGGTTCTTGTTTTGGAT+GGG | - | chr5_4:20350378-20350397 | Msa0842920:intron | 40.0% |
| !!! | CAAGGTTCTTGTTTTGGATG+GGG | - | chr5_4:20350379-20350398 | Msa0842920:intron | 40.0% |
| ATGAGTGATCATCTCTTGGT+AGG | + | chr5_4:20350435-20350454 | None:intergenic | 40.0% | |
| GAAGATGAGTGATCATCTCT+TGG | + | chr5_4:20350439-20350458 | None:intergenic | 40.0% | |
| CTCAATTCCAAACCCCAAAA+AGG | - | chr5_4:20350466-20350485 | Msa0842920:intron | 40.0% | |
| GATGGTTGCTTAGAGGAATT+TGG | - | chr5_4:20350630-20350649 | Msa0842920:intron | 40.0% | |
| CGTTACAGTGTTGTCAATCT+CGG | - | chr5_4:20350824-20350843 | Msa0842920:intron | 40.0% | |
| GTTACAGTGTTGTCAATCTC+GGG | - | chr5_4:20350825-20350844 | Msa0842920:intron | 40.0% | |
| GCTTTAGCACTGTAGCATAA+TGG | + | chr5_4:20350879-20350898 | None:intergenic | 40.0% | |
| ACAGCAGCACTATAATGTAG+TGG | + | chr5_4:20350965-20350984 | None:intergenic | 40.0% | |
| ATATGTCGAAGAGAGTAGGA+AGG | - | chr5_4:20351013-20351032 | Msa0842920:CDS | 40.0% | |
| CAACATTCCATTCTCAAGAG+TGG | + | chr5_4:20351074-20351093 | None:intergenic | 40.0% | |
| CACTCTTGAGAATGGAATGT+TGG | - | chr5_4:20351072-20351091 | Msa0842920:intron | 40.0% | |
| !! | TGTTAGGTTTTGGTCATTGG+TGG | - | chr5_4:20351182-20351201 | Msa0842920:intron | 40.0% |
| GAAAAAAAAAAAGCGAGGGG+GGG | + | chr5_4:20351694-20351713 | None:intergenic | 40.0% | |
| GGAAAAAAAAAAAGCGAGGG+GGG | + | chr5_4:20351695-20351714 | None:intergenic | 40.0% | |
| CCACGTGTGACACTTAATAT+CGG | - | chr5_4:20351917-20351936 | Msa0842920:intron | 40.0% | |
| ACTGCATCATAAGTTCCTTC+TGG | + | chr5_4:20352061-20352080 | None:intergenic | 40.0% | |
| GTGGATTCATCTGATCCTAT+TGG | - | chr5_4:20352085-20352104 | Msa0842920:intron | 40.0% | |
| ! | CTTGCAACCGACTCAAAAAA+GGG | + | chr5_4:20352232-20352251 | None:intergenic | 40.0% |
| !!! | CTTTTTTGAGTCGGTTGCAA+GGG | - | chr5_4:20352231-20352250 | Msa0842920:intron | 40.0% |
| TGACAGAGCCTTTGAATACT+TGG | + | chr5_4:20352345-20352364 | None:intergenic | 40.0% | |
| TTATGCTTTGCTCAACTGAG+GGG | - | chr5_4:20352944-20352963 | Msa0842920:intron | 40.0% | |
| !!! | TAAGGGAAGTTTTGGGGTAA+GGG | + | chr5_4:20353086-20353105 | None:intergenic | 40.0% |
| ! | TTTTAGGCCTCATTAGGGTT+TGG | + | chr5_4:20353122-20353141 | None:intergenic | 40.0% |
| ! | AACAAGGGCTTTAGTGACAT+AGG | - | chr5_4:20353200-20353219 | Msa0842920:intron | 40.0% |
| GCTTTAGTGACATAGGACTT+AGG | - | chr5_4:20353207-20353226 | Msa0842920:intron | 40.0% | |
| AAAAGACCCACAAACAAGTC+AGG | + | chr5_4:20353238-20353257 | None:intergenic | 40.0% | |
| ATTGCTCTCTTGGCAAAAGA+TGG | + | chr5_4:20353368-20353387 | None:intergenic | 40.0% | |
| CCAAACCAAACCAAACATGG+CGG | - | chr5_4:20348543-20348562 | Msa0842920:three_prime_UTR | 45.0% | |
| AAGGGAAAATCTGTGGACTC+AGG | + | chr5_4:20348592-20348611 | None:intergenic | 45.0% | |
| CCTCTTCAAGGGAAAATCTG+TGG | + | chr5_4:20348599-20348618 | None:intergenic | 45.0% | |
| ! | CCACAGATTTTCCCTTGAAG+AGG | - | chr5_4:20348596-20348615 | Msa0842920:three_prime_UTR | 45.0% |
| CTAATTTCAGAGAACCAGCC+AGG | + | chr5_4:20348721-20348740 | None:intergenic | 45.0% | |
| AAAACGAACCAGGCCACATT+GGG | + | chr5_4:20348744-20348763 | None:intergenic | 45.0% | |
| GTCAGCTGTTAGTTGTGGTT+TGG | - | chr5_4:20348918-20348937 | Msa0842920:intron | 45.0% | |
| AGCGCAGTGTGAGATTTCAA+GGG | - | chr5_4:20349360-20349379 | Msa0842920:intron | 45.0% | |
| AAAGTGGTGATTGAACTCCG+AGG | - | chr5_4:20349621-20349640 | Msa0842920:intron | 45.0% | |
| AAGTGGTGATTGAACTCCGA+GGG | - | chr5_4:20349622-20349641 | Msa0842920:intron | 45.0% | |
| ! | TTGAACTCCGAGGGTATGTT+TGG | - | chr5_4:20349631-20349650 | Msa0842920:intron | 45.0% |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr5_4:20349649-20349668 | Msa0842920:intron | 45.0% | |
| TTTCAGGGTCTGTTTCAGAG+GGG | + | chr5_4:20349828-20349847 | None:intergenic | 45.0% | |
| GTTCTTAAGTAGCTCAGTGG+TGG | - | chr5_4:20349863-20349882 | Msa0842920:CDS | 45.0% | |
| TCAGGATGTTATGGTCTTCC+AGG | - | chr5_4:20350259-20350278 | Msa0842920:intron | 45.0% | |
| TAACTGAAGCTGCATGTACC+TGG | + | chr5_4:20350280-20350299 | None:intergenic | 45.0% | |
| GTAGTCAGCAACATATGGCA+AGG | - | chr5_4:20350361-20350380 | Msa0842920:intron | 45.0% | |
| !!! | GGCAAGGTTCTTGTTTTGGA+TGG | - | chr5_4:20350377-20350396 | Msa0842920:intron | 45.0% |
| GGTCATTCAGCTCACAGAAA+GGG | - | chr5_4:20350400-20350419 | Msa0842920:intron | 45.0% | |
| ! | GGGTTTGGAATTGAGCAAAG+TGG | + | chr5_4:20350461-20350480 | None:intergenic | 45.0% |
| TCTCGGGATGTGGAAAATAG+TGG | - | chr5_4:20350841-20350860 | Msa0842920:intron | 45.0% | |
| CTGCATGAAATCACGTCTCA+CGG | - | chr5_4:20350916-20350935 | Msa0842920:intron | 45.0% | |
| CACGCTTGAAAAGTTACGCA+AGG | + | chr5_4:20351124-20351143 | None:intergenic | 45.0% | |
| !! | TAGGTTTTGGTCATTGGTGG+AGG | - | chr5_4:20351185-20351204 | Msa0842920:intron | 45.0% |
| CATCTTACTTGGGTCCTGTT+TGG | - | chr5_4:20351365-20351384 | Msa0842920:intron | 45.0% | |
| ! | AAGCTGTTTCCGTGAACTCT+TGG | - | chr5_4:20351587-20351606 | Msa0842920:intron | 45.0% |
| CCGATATTAAGTGTCACACG+TGG | + | chr5_4:20351920-20351939 | None:intergenic | 45.0% | |
| GTGACACTTAATATCGGCGA+TGG | - | chr5_4:20351923-20351942 | Msa0842920:intron | 45.0% | |
| !! | TTTTTGAAGGCAGCTCCAGA+AGG | - | chr5_4:20352043-20352062 | Msa0842920:intron | 45.0% |
| ! | CCTTGCAACCGACTCAAAAA+AGG | + | chr5_4:20352233-20352252 | None:intergenic | 45.0% |
| !!! | CCTTTTTTGAGTCGGTTGCA+AGG | - | chr5_4:20352230-20352249 | Msa0842920:intron | 45.0% |
| ! | GTACTCAGGCGGAAAGTATA+TGG | - | chr5_4:20352278-20352297 | Msa0842920:intron | 45.0% |
| GCATATCATTGAGGACATCG+TGG | - | chr5_4:20352309-20352328 | Msa0842920:intron | 45.0% | |
| AAGGCTCTGTCAACTATGCT+TGG | - | chr5_4:20352353-20352372 | Msa0842920:intron | 45.0% | |
| TGTCAACTATGCTTGGACCA+CGG | - | chr5_4:20352360-20352379 | Msa0842920:intron | 45.0% | |
| AGAACACACCTTGGGTATGT+AGG | + | chr5_4:20352388-20352407 | None:intergenic | 45.0% | |
| GCAGAGTGTAAATGGGAAAG+TGG | + | chr5_4:20352426-20352445 | None:intergenic | 45.0% | |
| GCTATAGAATTGTCGCAGAG+CGG | + | chr5_4:20352530-20352549 | None:intergenic | 45.0% | |
| ! | CAACACAATTGGTCTCCAAG+AGG | + | chr5_4:20352799-20352818 | None:intergenic | 45.0% |
| CTCTTGGAGACCAATTGTGT+TGG | - | chr5_4:20352797-20352816 | Msa0842920:intron | 45.0% | |
| ! | TTCGGTCGATTTCAAGCATC+CGG | - | chr5_4:20352969-20352988 | Msa0842920:intron | 45.0% |
| !!! | CTAAGGGAAGTTTTGGGGTA+AGG | + | chr5_4:20353087-20353106 | None:intergenic | 45.0% |
| ! | CAACGCTAAGGGAAGTTTTG+GGG | + | chr5_4:20353092-20353111 | None:intergenic | 45.0% |
| ! | CCAACGCTAAGGGAAGTTTT+GGG | + | chr5_4:20353093-20353112 | None:intergenic | 45.0% |
| ! | GCCTCATTAGGGTTTGGTTT+GGG | + | chr5_4:20353116-20353135 | None:intergenic | 45.0% |
| TAGTGACATAGGACTTAGGC+CGG | - | chr5_4:20353211-20353230 | Msa0842920:intron | 45.0% | |
| GCAAACAGAAAGCTGCTGAA+TGG | + | chr5_4:20353346-20353365 | None:intergenic | 45.0% | |
| !! | TGGGATTGAAAGGGTGCTTA+TGG | - | chr5_4:20353418-20353437 | Msa0842920:intron | 45.0% |
| !! | AAAAAAAAATTAACATAAAA+GGG | + | chr5_4:20349121-20349140 | None:intergenic | 5.0% |
| !! | TAAAAAAAAATTAACATAAA+AGG | + | chr5_4:20349122-20349141 | None:intergenic | 5.0% |
| !!! | TTATTATTATTTTTTTGTTT+AGG | - | chr5_4:20352181-20352200 | Msa0842920:intron | 5.0% |
| ! | GGAAGTCACTTGGTTCGTGT+GGG | + | chr5_4:20348502-20348521 | None:intergenic | 50.0% |
| !! | CCGCCATGTTTGGTTTGGTT+TGG | + | chr5_4:20348546-20348565 | None:intergenic | 50.0% |
| ATCTGTGGACTCAGGAAGTG+TGG | + | chr5_4:20348584-20348603 | None:intergenic | 50.0% | |
| GTTTCAGAGACACCGTTGTG+AGG | + | chr5_4:20348655-20348674 | None:intergenic | 50.0% | |
| GAAATTAGCCCAATGTGGCC+TGG | - | chr5_4:20348733-20348752 | Msa0842920:three_prime_UTR | 50.0% | |
| GAAAACGAACCAGGCCACAT+TGG | + | chr5_4:20348745-20348764 | None:intergenic | 50.0% | |
| CAGCGCAGTGTGAGATTTCA+AGG | - | chr5_4:20349359-20349378 | Msa0842920:intron | 50.0% | |
| ! | ACTCCGAGGGTATGTTTGGA+TGG | - | chr5_4:20349635-20349654 | Msa0842920:intron | 50.0% |
| CCTCCATCCAAACATACCCT+CGG | + | chr5_4:20349641-20349660 | None:intergenic | 50.0% | |
| ! | CGAGGGTATGTTTGGATGGA+GGG | - | chr5_4:20349639-20349658 | Msa0842920:intron | 50.0% |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr5_4:20349648-20349667 | Msa0842920:intron | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr5_4:20349650-20349669 | Msa0842920:intron | 50.0% | |
| !!! | TTTCAGAGGGGGGTTTTGGA+TGG | + | chr5_4:20349816-20349835 | None:intergenic | 50.0% |
| ! | TCTGTTTCAGAGGGGGGTTT+TGG | + | chr5_4:20349820-20349839 | None:intergenic | 50.0% |
| TTCAGGGTCTGTTTCAGAGG+GGG | + | chr5_4:20349827-20349846 | None:intergenic | 50.0% | |
| GGGTCATTCAGCTCACAGAA+AGG | - | chr5_4:20350399-20350418 | Msa0842920:intron | 50.0% | |
| GTGTTGTCAATCTCGGGATG+TGG | - | chr5_4:20350831-20350850 | Msa0842920:intron | 50.0% | |
| CACGTCTCACGGAGTAATAG+TGG | - | chr5_4:20350927-20350946 | Msa0842920:intron | 50.0% | |
| TTGGTCATTGGTGGAGGAGA+TGG | - | chr5_4:20351191-20351210 | Msa0842920:intron | 50.0% | |
| GAGATACCCACCCAACTTGA+AGG | + | chr5_4:20351716-20351735 | None:intergenic | 50.0% | |
| ! | GATTTTAGGCCGCATGACGA+AGG | + | chr5_4:20351774-20351793 | None:intergenic | 50.0% |
| TGAGTACACACAACACCTCC+TGG | + | chr5_4:20352265-20352284 | None:intergenic | 50.0% | |
| !! | AGGAGGTGTTGTGTGTACTC+AGG | - | chr5_4:20352264-20352283 | Msa0842920:intron | 50.0% |
| ! | AGGTGTTGTGTGTACTCAGG+CGG | - | chr5_4:20352267-20352286 | Msa0842920:intron | 50.0% |
| GGATGCTTGAAATCGACCGA+AGG | + | chr5_4:20352970-20352989 | None:intergenic | 50.0% | |
| GAGAATGATAGCCAGCATGC+AGG | - | chr5_4:20353006-20353025 | Msa0842920:intron | 50.0% | |
| TCAATGGTCTTCCTGCATGC+TGG | + | chr5_4:20353020-20353039 | None:intergenic | 50.0% | |
| CCCAAAACTTCCCTTAGCGT+TGG | - | chr5_4:20353090-20353109 | Msa0842920:intron | 50.0% | |
| ! | GCCAACGCTAAGGGAAGTTT+TGG | + | chr5_4:20353094-20353113 | None:intergenic | 50.0% |
| !! | TTGGTTTGGGCCAACGCTAA+GGG | + | chr5_4:20353103-20353122 | None:intergenic | 50.0% |
| !! | TTTGGTTTGGGCCAACGCTA+AGG | + | chr5_4:20353104-20353123 | None:intergenic | 50.0% |
| GCCCAAACCAAACCCTAATG+AGG | - | chr5_4:20353112-20353131 | Msa0842920:intron | 50.0% | |
| ! | GGCCTCATTAGGGTTTGGTT+TGG | + | chr5_4:20353117-20353136 | None:intergenic | 50.0% |
| ACCCACAAACAAGTCAGGAC+CGG | + | chr5_4:20353233-20353252 | None:intergenic | 50.0% | |
| ! | ACGGTTCATTGATGGGCAGA+TGG | + | chr5_4:20353482-20353501 | None:intergenic | 50.0% |
| ATCTGCCCATCAATGAACCG+TGG | - | chr5_4:20353481-20353500 | Msa0842920:CDS | 50.0% | |
| ! | GGGAAGTCACTTGGTTCGTG+TGG | + | chr5_4:20348503-20348522 | None:intergenic | 55.0% |
| TGCTGCCGCCATGTTTGGTT+TGG | + | chr5_4:20348551-20348570 | None:intergenic | 55.0% | |
| ! | CCGAGGGTATGTTTGGATGG+AGG | - | chr5_4:20349638-20349657 | Msa0842920:intron | 55.0% |
| TCAGGGTCTGTTTCAGAGGG+GGG | + | chr5_4:20349826-20349845 | None:intergenic | 55.0% | |
| AGGGGAGGCTCACTCATTGA+AGG | - | chr5_4:20350202-20350221 | Msa0842920:intron | 55.0% | |
| GGAGGCTCACTCATTGAAGG+TGG | - | chr5_4:20350205-20350224 | Msa0842920:intron | 55.0% | |
| AGCAGGAGTTAGCACGGTGA+CGG | + | chr5_4:20350707-20350726 | None:intergenic | 55.0% | |
| GTGTGCAGCAGGAGTTAGCA+CGG | + | chr5_4:20350713-20350732 | None:intergenic | 55.0% | |
| GTCATTGGTGGAGGAGATGG+AGG | - | chr5_4:20351194-20351213 | Msa0842920:intron | 55.0% | |
| AATGGCGTGAAACTTCCCGC+AGG | + | chr5_4:20351223-20351242 | None:intergenic | 55.0% | |
| GGAGAGGCAGACTGAGACTA+GGG | + | chr5_4:20351673-20351692 | None:intergenic | 55.0% | |
| AAAAAAAGCGAGGGGGGGAG+AGG | + | chr5_4:20351689-20351708 | None:intergenic | 55.0% | |
| CCTTGGGTATGTAGGAACCG+TGG | + | chr5_4:20352380-20352399 | None:intergenic | 55.0% | |
| CCACGGTTCCTACATACCCA+AGG | - | chr5_4:20352377-20352396 | Msa0842920:intron | 55.0% | |
| TTGCTCAACTGAGGGGCCTT+CGG | - | chr5_4:20352951-20352970 | Msa0842920:intron | 55.0% | |
| !! | GCCGGTCCTGACTTGTTTGT+GGG | - | chr5_4:20353229-20353248 | Msa0842920:intron | 55.0% |
| TCTGCTGCTGCCGCCATGTT+TGG | + | chr5_4:20348556-20348575 | None:intergenic | 60.0% | |
| GCAGGAGTTAGCACGGTGAC+GGG | + | chr5_4:20350706-20350725 | None:intergenic | 60.0% | |
| GAGGAGATGGAGGAGTCCTG+CGG | - | chr5_4:20351204-20351223 | Msa0842920:intron | 60.0% | |
| AGGAGATGGAGGAGTCCTGC+GGG | - | chr5_4:20351205-20351224 | Msa0842920:intron | 60.0% | |
| GGGAGAGGCAGACTGAGACT+AGG | + | chr5_4:20351674-20351693 | None:intergenic | 60.0% | |
| GTTGCAAGGGCTCTTCGTCC+AGG | - | chr5_4:20352244-20352263 | Msa0842920:intron | 60.0% | |
| !! | GGCCGGTCCTGACTTGTTTG+TGG | - | chr5_4:20353228-20353247 | Msa0842920:intron | 60.0% |
| GCAAGGGCTCTTCGTCCAGG+AGG | - | chr5_4:20352247-20352266 | Msa0842920:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 20348482 | 20353749 | 20348482 | ID=Msa0842920;Name=Msa0842920 |
| chr5_4 | mRNA | 20348482 | 20353749 | 20348482 | ID=Msa0842920-mRNA-1;Parent=Msa0842920;Name=Msa0842920-mRNA-1;_AED=0.15;_eAED=0.15;_QI=77|1|1|1|1|1|9|343|344 |
| chr5_4 | exon | 20348482 | 20348890 | 20348482 | ID=Msa0842920-mRNA-1:exon:8429;Parent=Msa0842920-mRNA-1 |
| chr5_4 | exon | 20349175 | 20349301 | 20349175 | ID=Msa0842920-mRNA-1:exon:8428;Parent=Msa0842920-mRNA-1 |
| chr5_4 | exon | 20349833 | 20350028 | 20349833 | ID=Msa0842920-mRNA-1:exon:8427;Parent=Msa0842920-mRNA-1 |
| chr5_4 | exon | 20350125 | 20350196 | 20350125 | ID=Msa0842920-mRNA-1:exon:8426;Parent=Msa0842920-mRNA-1 |
| chr5_4 | exon | 20350287 | 20350359 | 20350287 | ID=Msa0842920-mRNA-1:exon:8425;Parent=Msa0842920-mRNA-1 |
| chr5_4 | exon | 20350939 | 20351043 | 20350939 | ID=Msa0842920-mRNA-1:exon:8424;Parent=Msa0842920-mRNA-1 |
| chr5_4 | exon | 20351744 | 20351866 | 20351744 | ID=Msa0842920-mRNA-1:exon:8423;Parent=Msa0842920-mRNA-1 |
| chr5_4 | exon | 20351951 | 20352027 | 20351951 | ID=Msa0842920-mRNA-1:exon:8422;Parent=Msa0842920-mRNA-1 |
| chr5_4 | exon | 20353477 | 20353749 | 20353477 | ID=Msa0842920-mRNA-1:exon:8421;Parent=Msa0842920-mRNA-1 |
| chr5_4 | five_prime_UTR | 20353673 | 20353749 | 20353673 | ID=Msa0842920-mRNA-1:five_prime_utr;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20353477 | 20353672 | 20353477 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20351951 | 20352027 | 20351951 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20351744 | 20351866 | 20351744 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20350939 | 20351043 | 20350939 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20350287 | 20350359 | 20350287 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20350125 | 20350196 | 20350125 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20349833 | 20350028 | 20349833 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20349175 | 20349301 | 20349175 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | CDS | 20348825 | 20348890 | 20348825 | ID=Msa0842920-mRNA-1:cds;Parent=Msa0842920-mRNA-1 |
| chr5_4 | three_prime_UTR | 20348482 | 20348824 | 20348482 | ID=Msa0842920-mRNA-1:three_prime_utr;Parent=Msa0842920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
