AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374800 MtrunA17_Chr3g0136861 97.807 228 5 0 1 228 1 228 4.99e-165 454
Msa1374800 MtrunA17_Chr1g0150121 40.351 171 66 4 1 169 1 137 3.66e-28 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374800 AT5G25080.1 50.000 202 98 2 13 214 16 214 1.97e-69 212

Find 83 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGCTGCTCAGGAGTTTC+TGG 0.118592 tig0019570:-136372 Msa1374800:CDS
AATATATTAAAGTTGGATTT+TGG 0.159125 tig0019570:-133809 Msa1374800:three_prime_UTR
TGGTAATAATGGCGGTATTA+AGG 0.185771 tig0019570:-136324 Msa1374800:CDS
GAGGAGGGTAGAAGTGATTT+TGG 0.247186 tig0019570:+137358 None:intergenic
ACGCCTTCTAGATTTGAATA+AGG 0.277390 tig0019570:-137058 Msa1374800:CDS
CTACCATAGTTCAGAAATTC+AGG 0.310944 tig0019570:+136214 None:intergenic
ATTTCATTAGTTAGATGTTT+AGG 0.316283 tig0019570:-133960 Msa1374800:three_prime_UTR
CAGTTATAATATATTAAAGT+TGG 0.321665 tig0019570:-133816 Msa1374800:three_prime_UTR
TTAGTTAGATGTTTAGGCTT+TGG 0.330093 tig0019570:-133954 Msa1374800:three_prime_UTR
TCAATTCACACACACATAAC+TGG 0.347303 tig0019570:-133992 Msa1374800:three_prime_UTR
CGCCTTCTAGATTTGAATAA+GGG 0.349424 tig0019570:-137057 Msa1374800:intron
GGTAATAATGGCGGTATTAA+GGG 0.353390 tig0019570:-136323 Msa1374800:CDS
TTCTGTTCAAGCTGCTGCTC+AGG 0.368572 tig0019570:-136381 Msa1374800:CDS
TGCTTCAATTTGTGTTGTAC+TGG 0.368687 tig0019570:-133899 Msa1374800:three_prime_UTR
AGATGTTTAGGCTTTGGATT+TGG 0.371676 tig0019570:-133948 Msa1374800:three_prime_UTR
GACTGAATCCATCACCGCTT+CGG 0.381291 tig0019570:+137505 None:intergenic
GGAAGTTGGGAGAGAGTTTG+AGG 0.381337 tig0019570:+137416 None:intergenic
CACACACATAACTGGACATA+TGG 0.390185 tig0019570:-133984 Msa1374800:three_prime_UTR
AGAGTTTGAGGGTTCATAAG+AGG 0.391223 tig0019570:+137428 None:intergenic
TGACCTGAATTTCTGAACTA+TGG 0.391907 tig0019570:-136217 Msa1374800:intron
ACTGAATCCATCACCGCTTC+GGG 0.404917 tig0019570:+137506 None:intergenic
GATTTGACAGGGTTATCATC+TGG 0.415518 tig0019570:+137203 None:intergenic
CCCTTCTCCGCAGGTGTGTG+TGG 0.420952 tig0019570:-134123 Msa1374800:intron
TGAACGGAATTCACGAAGAT+TGG 0.426985 tig0019570:+137469 None:intergenic
TACCCTTATTCAAATCTAGA+AGG 0.427243 tig0019570:+137055 None:intergenic
TGAGAATTCAACATAGTAGA+AGG 0.433685 tig0019570:+136667 None:intergenic
CATGCCTCATCCACACTGTA+TGG 0.436915 tig0019570:-133844 Msa1374800:three_prime_UTR
CACGTTCAAGAGGTGGAAGT+TGG 0.442376 tig0019570:+137402 None:intergenic
TGGAGAGGAGAAAGAGAGAG+TGG 0.446758 tig0019570:+137378 None:intergenic
CAATTTGTGTTGTACTGGTT+GGG 0.448764 tig0019570:-133894 Msa1374800:three_prime_UTR
TCCGCAGGTGTGTGTGGGAG+AGG 0.454268 tig0019570:-134117 Msa1374800:intron
TCTTTGCCTGACCTCACTCC+AGG 0.468606 tig0019570:-136619 Msa1374800:intron
CTGTAACTTTCCTTTGCCAA+TGG 0.477592 tig0019570:-134093 Msa1374800:three_prime_UTR
TCAATTTGTGTTGTACTGGT+TGG 0.482306 tig0019570:-133895 Msa1374800:three_prime_UTR
ATGATGATTACGTGTGAGGA+GGG 0.486690 tig0019570:+137343 None:intergenic
TAGTTCAGAAATTCAGGTCA+TGG 0.488101 tig0019570:+136220 None:intergenic
ACGTTCAAGAGGTGGAAGTT+GGG 0.491157 tig0019570:+137403 None:intergenic
GCAGCTTGAACAGAAATAGA+TGG 0.491461 tig0019570:+136389 None:intergenic
GGGAAAGAAGAGGAAACATC+AGG 0.491988 tig0019570:-136453 Msa1374800:CDS
CTCACAAGCTCTGATTTGAC+AGG 0.494155 tig0019570:+137191 None:intergenic
GAAGTTGGGAGAGAGTTTGA+GGG 0.500143 tig0019570:+137417 None:intergenic
AGGAGTACCCGAAGCGGTGA+TGG 0.509427 tig0019570:-137513 Msa1374800:CDS
AACCCACCTGGAGTGAGGTC+AGG 0.514003 tig0019570:+136613 None:intergenic
CCTTCTCCGCAGGTGTGTGT+GGG 0.517915 tig0019570:-134122 Msa1374800:intron
CTGACGAACACAAGCTCCAT+TGG 0.520526 tig0019570:+134077 None:intergenic
AGGAGCAGGCTGGTCAAAAG+AGG 0.529385 tig0019570:-136433 Msa1374800:CDS
TCTCGAAGTTACTGCGGTGG+AGG 0.530653 tig0019570:+137582 None:intergenic
AGTGAAAGTGAAAGCTGTGG+AGG 0.534576 tig0019570:-137533 Msa1374800:CDS
GAAGAGGAAACATCAGGAGC+AGG 0.536755 tig0019570:-136447 Msa1374800:CDS
CAGAACAACGGCAGAGAATG+AGG 0.541135 tig0019570:-136493 Msa1374800:CDS
AATTCCATACAGTGTGGATG+AGG 0.552515 tig0019570:+133840 None:intergenic
GAGTGGGCACGTTCAAGAGG+TGG 0.552869 tig0019570:+137395 None:intergenic
AGAGAGTGGGCACGTTCAAG+AGG 0.559812 tig0019570:+137392 None:intergenic
TTGTGTTGTACTGGTTGGGA+AGG 0.569963 tig0019570:-133890 Msa1374800:three_prime_UTR
TGGAGCTTGTGTTCGTCAGA+TGG 0.576053 tig0019570:-134073 Msa1374800:three_prime_UTR
GACATGTTGTCAATTTGAAG+TGG 0.576081 tig0019570:+136299 None:intergenic
AGTTCAGAAATTCAGGTCAT+GGG 0.578175 tig0019570:+136221 None:intergenic
TTCACGAAGATTGGAGAGAG+TGG 0.578299 tig0019570:+137478 None:intergenic
GTAATAATGGCGGTATTAAG+GGG 0.582541 tig0019570:-136322 Msa1374800:CDS
AGGAAACATCAGGAGCAGGC+TGG 0.583685 tig0019570:-136443 Msa1374800:CDS
GTTTCTGGAGAAAGCACAGA+GGG 0.589967 tig0019570:-136357 Msa1374800:CDS
AAAACTGTTGAAAATGTGAA+CGG 0.603460 tig0019570:+137453 None:intergenic
GGAGAGGAGAAAGAGAGAGT+GGG 0.607959 tig0019570:+137379 None:intergenic
GACAATCTTTCAGAAGATGA+CGG 0.608692 tig0019570:-136254 Msa1374800:CDS
AGGAACTTAAGTAGCGGCGA+GGG 0.610045 tig0019570:-136473 Msa1374800:CDS
ATGTGTGTGTGAATTGAGAG+AGG 0.618311 tig0019570:+133998 None:intergenic
AACACAAGCTCCATTGGCAA+AGG 0.620080 tig0019570:+134083 None:intergenic
GCAGTGAAATTGAGGTGCAG+TGG 0.625638 tig0019570:-137233 Msa1374800:intron
GGAAGTGAAAGTGAAAGCTG+TGG 0.627299 tig0019570:-137536 Msa1374800:CDS
AACATAGTAGAAGGTCGCAA+TGG 0.635548 tig0019570:+136676 None:intergenic
ATGTCTCGAAGTTACTGCGG+TGG 0.647253 tig0019570:+137579 None:intergenic
GAAGATGATGATTACGTGTG+AGG 0.647831 tig0019570:+137339 None:intergenic
TTAACAACCCACCTGGAGTG+AGG 0.652502 tig0019570:+136608 None:intergenic
GAGGAACTTAAGTAGCGGCG+AGG 0.667273 tig0019570:-136474 Msa1374800:CDS
GATGATGATTACGTGTGAGG+AGG 0.668929 tig0019570:+137342 None:intergenic
TCACAAGCTCTGATTTGACA+GGG 0.674644 tig0019570:+137192 None:intergenic
AACTGAAATTCCATACAGTG+TGG 0.675054 tig0019570:+133834 None:intergenic
CTGTGGAGGAGTACCCGAAG+CGG 0.685892 tig0019570:-137519 Msa1374800:CDS
GTAGCGGCGAGGGAAAGAAG+AGG 0.690376 tig0019570:-136463 Msa1374800:CDS
TTATTTCATATGCAGAACAA+CGG 0.698855 tig0019570:-136505 Msa1374800:intron
AGAATGAGGAACTTAAGTAG+CGG 0.704922 tig0019570:-136479 Msa1374800:CDS
AGTTTCTGGAGAAAGCACAG+AGG 0.726155 tig0019570:-136358 Msa1374800:CDS
TGAATGTCTCGAAGTTACTG+CGG 0.754830 tig0019570:+137576 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATTATAATTCAGAT+GGG + tig0019570:135382-135401 None:intergenic 10.0%
!! TAATAAAATTATAATTCAGA+TGG + tig0019570:135383-135402 None:intergenic 10.0%
!! AAGTAAAAAAATAAAATGAA+AGG - tig0019570:135707-135726 Msa1374800:intron 10.0%
!!! TTTTAAAATGCTTTAAAAAT+TGG + tig0019570:136394-136413 None:intergenic 10.0%
!! ATAAAATTATAATTCAGATG+GGG + tig0019570:135381-135400 None:intergenic 15.0%
!! ACATTAAACTAAACTTAAAT+TGG - tig0019570:135540-135559 Msa1374800:intron 15.0%
!!! AGTACAATATACTTTAATTT+TGG + tig0019570:136314-136333 None:intergenic 15.0%
!!! AAAATATTGATTAATGTGTT+TGG - tig0019570:136415-136434 Msa1374800:CDS 15.0%
!!! AAATATTGATTAATGTGTTT+GGG - tig0019570:136416-136435 Msa1374800:CDS 15.0%
!! TTCATCATGTTATAATTATT+AGG - tig0019570:136507-136526 Msa1374800:intron 15.0%
!! TCATCATGTTATAATTATTA+GGG - tig0019570:136508-136527 Msa1374800:intron 15.0%
!! ATAAAATCATAAATTGAACA+CGG + tig0019570:137118-137137 None:intergenic 15.0%
!!! ATTGTTTAAGTTTATAATCT+AGG - tig0019570:137154-137173 Msa1374800:intron 15.0%
!!! TTTTTAAGAAATGTATATCA+GGG + tig0019570:137238-137257 None:intergenic 15.0%
!!! ATTTTTAAGAAATGTATATC+AGG + tig0019570:137239-137258 None:intergenic 15.0%
!! CAGTTATAATATATTAAAGT+TGG - tig0019570:137655-137674 Msa1374800:five_prime_UTR 15.0%
!!! AATATATTAAAGTTGGATTT+TGG - tig0019570:137662-137681 Msa1374800:five_prime_UTR 15.0%
!! AAAGGGAATAAGAAAAATTA+CGG - tig0019570:133808-133827 Msa1374800:three_prime_UTR 20.0%
!! ATAGAACAAGAAAATTAAGT+TGG + tig0019570:134199-134218 None:intergenic 20.0%
!! AAGTTCAAAATATAAGATGA+TGG - tig0019570:134504-134523 Msa1374800:intron 20.0%
!! AAGTCTAAGCTAATAAAAAA+GGG + tig0019570:134720-134739 None:intergenic 20.0%
!! CATAAATTAATTAACCAAGT+CGG - tig0019570:135613-135632 Msa1374800:intron 20.0%
!!! ATATTATGTTAGTTTTTCTC+AGG + tig0019570:135745-135764 None:intergenic 20.0%
!! TTTGGAAAAAAAAATATGTG+AGG + tig0019570:135796-135815 None:intergenic 20.0%
!! AAATCTTAAAAATGTAGGAT+TGG + tig0019570:136016-136035 None:intergenic 20.0%
!! GTAGAATTAGTAAAATACTT+CGG + tig0019570:136241-136260 None:intergenic 20.0%
!!! TAAAATGCTTTAAAAATTGG+AGG + tig0019570:136391-136410 None:intergenic 20.0%
!! CATCATGTTATAATTATTAG+GGG - tig0019570:136509-136528 Msa1374800:intron 20.0%
!! AAGGGAAAAAATTATATTTG+TGG - tig0019570:136795-136814 Msa1374800:intron 20.0%
!! TAAAATCATAAATTGAACAC+GGG + tig0019570:137117-137136 None:intergenic 20.0%
!!! TTGTTTCTGTTAGAATTTTA+TGG - tig0019570:137203-137222 Msa1374800:CDS 20.0%
!! ATTTCATTAGTTAGATGTTT+AGG - tig0019570:137511-137530 Msa1374800:CDS 20.0%
!! ATTTAAAAGCCCTAGATTTT+AGG - tig0019570:133858-133877 Msa1374800:three_prime_UTR 25.0%
! AAAACTGTTGAAAATGTGAA+CGG + tig0019570:134021-134040 None:intergenic 25.0%
!!! ATTTTTTTGCAGTGAAATTG+AGG - tig0019570:134230-134249 Msa1374800:intron 25.0%
!!! GATTTTTGTTGTGTATTTTC+AGG - tig0019570:134359-134378 Msa1374800:intron 25.0%
!!! AAGATGATGGATATTTGAAT+TGG - tig0019570:134517-134536 Msa1374800:intron 25.0%
! AGTCTAAGCTAATAAAAAAG+GGG + tig0019570:134719-134738 None:intergenic 25.0%
! CAAGTCTAAGCTAATAAAAA+AGG + tig0019570:134721-134740 None:intergenic 25.0%
! TTATTTCATATGCAGAACAA+CGG - tig0019570:134966-134985 Msa1374800:intron 25.0%
! TTACACTCGTAAAGTAAATA+AGG + tig0019570:135298-135317 None:intergenic 25.0%
!!! ACGATTTGATAATGCATTTT+AGG - tig0019570:135402-135421 Msa1374800:intron 25.0%
!!! CGATTTGATAATGCATTTTA+GGG - tig0019570:135403-135422 Msa1374800:intron 25.0%
!!! GATTTGATAATGCATTTTAG+GGG - tig0019570:135404-135423 Msa1374800:intron 25.0%
! AAAAAATATGTGAGGAGATT+TGG + tig0019570:135788-135807 None:intergenic 25.0%
!! ATTTACTGTTATTTAACAGC+TGG - tig0019570:136262-136281 Msa1374800:CDS 25.0%
! TAATCTTTGGATATGTATCT+AGG + tig0019570:136367-136386 None:intergenic 25.0%
! AAAAATTGGAGGATAATCTT+TGG + tig0019570:136380-136399 None:intergenic 25.0%
!! TGGAGTTGTATCTAAAATTA+TGG + tig0019570:136451-136470 None:intergenic 25.0%
!! ACAGATTTTACATTGAAGTT+TGG - tig0019570:136951-136970 Msa1374800:intron 25.0%
! TTACATTGAAGTTTGGAAAA+TGG - tig0019570:136958-136977 Msa1374800:intron 25.0%
GCAGAAAAACCTAAAATCTA+GGG + tig0019570:133870-133889 None:intergenic 30.0%
TTCAACACAAAAATGGTGAA+AGG - tig0019570:133914-133933 Msa1374800:three_prime_UTR 30.0%
TACCCTTATTCAAATCTAGA+AGG + tig0019570:134419-134438 None:intergenic 30.0%
ACATGTTAACCTTCAATATG+AGG - tig0019570:134673-134692 Msa1374800:intron 30.0%
TTAGCTTAGACTTGTAGTAT+TGG - tig0019570:134727-134746 Msa1374800:intron 30.0%
! TGATTGTGTTTTCGTGATTT+TGG - tig0019570:134756-134775 Msa1374800:intron 30.0%
TGAGAATTCAACATAGTAGA+AGG + tig0019570:134807-134826 None:intergenic 30.0%
TAACTTGGTTTATTGCTTCT+AGG - tig0019570:134883-134902 Msa1374800:intron 30.0%
AACTTGGTTTATTGCTTCTA+GGG - tig0019570:134884-134903 Msa1374800:intron 30.0%
TACATGCAATGTGATCAAAA+TGG + tig0019570:134933-134952 None:intergenic 30.0%
ATTGCATGTATGTAAAGAAG+TGG - tig0019570:134943-134962 Msa1374800:intron 30.0%
!! GAACTTTTTGGTGGTAATAA+TGG - tig0019570:135136-135155 Msa1374800:intron 30.0%
ATCCCAAGTTTGAAAACATT+GGG + tig0019570:135460-135479 None:intergenic 30.0%
!!! AGTTGATTTTTTTCCACCTA+TGG - tig0019570:135657-135676 Msa1374800:intron 30.0%
!!! ATTTTTTTCCACCTATGGTT+AGG - tig0019570:135662-135681 Msa1374800:intron 30.0%
AATTAGAAAGACCTAACCAT+AGG + tig0019570:135676-135695 None:intergenic 30.0%
GGGCAAAATCTTAAAAATGT+AGG + tig0019570:136021-136040 None:intergenic 30.0%
!! TACAATCCTACAAGTTTTGA+AGG + tig0019570:136126-136145 None:intergenic 30.0%
ACTTATCTGTTCATTCTTTG+AGG - tig0019570:136539-136558 Msa1374800:intron 30.0%
GATGTAAGGAATAAAAAACG+TGG - tig0019570:136561-136580 Msa1374800:intron 30.0%
TGTCGGTATCACAAAAAATT+AGG + tig0019570:136770-136789 None:intergenic 30.0%
!!! ATTTTTTCCCTTATCAGTGT+CGG + tig0019570:136787-136806 None:intergenic 30.0%
TTAGTTAGATGTTTAGGCTT+TGG - tig0019570:137517-137536 Msa1374800:CDS 30.0%
! TAAAGTTGGATTTTGGATGT+TGG - tig0019570:137669-137688 Msa1374800:five_prime_UTR 30.0%
GGCAGAAAAACCTAAAATCT+AGG + tig0019570:133871-133890 None:intergenic 35.0%
CGAGACATTCAACACAAAAA+TGG - tig0019570:133907-133926 Msa1374800:three_prime_UTR 35.0%
TCAAACAGAGTAAGCAACAA+GGG + tig0019570:134341-134360 None:intergenic 35.0%
ATCAAACAGAGTAAGCAACA+AGG + tig0019570:134342-134361 None:intergenic 35.0%
ACGCCTTCTAGATTTGAATA+AGG - tig0019570:134413-134432 Msa1374800:intron 35.0%
CGCCTTCTAGATTTGAATAA+GGG - tig0019570:134414-134433 Msa1374800:intron 35.0%
TTGAATTTAAGCACATGCGT+CGG - tig0019570:134629-134648 Msa1374800:intron 35.0%
TAACCTTCAATATGAGGTGT+TGG - tig0019570:134679-134698 Msa1374800:intron 35.0%
ACTTGGTTTATTGCTTCTAG+GGG - tig0019570:134885-134904 Msa1374800:intron 35.0%
AGAATGAGGAACTTAAGTAG+CGG - tig0019570:134992-135011 Msa1374800:intron 35.0%
!! CTTTTTGGTGGTAATAATGG+CGG - tig0019570:135139-135158 Msa1374800:intron 35.0%
TGGTAATAATGGCGGTATTA+AGG - tig0019570:135147-135166 Msa1374800:intron 35.0%
GGTAATAATGGCGGTATTAA+GGG - tig0019570:135148-135167 Msa1374800:intron 35.0%
GTAATAATGGCGGTATTAAG+GGG - tig0019570:135149-135168 Msa1374800:intron 35.0%
GACATGTTGTCAATTTGAAG+TGG + tig0019570:135175-135194 None:intergenic 35.0%
GACAATCTTTCAGAAGATGA+CGG - tig0019570:135217-135236 Msa1374800:intron 35.0%
AGTTCAGAAATTCAGGTCAT+GGG + tig0019570:135253-135272 None:intergenic 35.0%
TAGTTCAGAAATTCAGGTCA+TGG + tig0019570:135254-135273 None:intergenic 35.0%
TGACCTGAATTTCTGAACTA+TGG - tig0019570:135254-135273 Msa1374800:intron 35.0%
CTACCATAGTTCAGAAATTC+AGG + tig0019570:135260-135279 None:intergenic 35.0%
CAGTGCGGATTTACAAATTA+GGG - tig0019570:135340-135359 Msa1374800:intron 35.0%
! AGACCCAATGTTTTCAAACT+TGG - tig0019570:135454-135473 Msa1374800:intron 35.0%
! GACCCAATGTTTTCAAACTT+GGG - tig0019570:135455-135474 Msa1374800:intron 35.0%
GATCCCAAGTTTGAAAACAT+TGG + tig0019570:135461-135480 None:intergenic 35.0%
!!! TAGTTTTTTCACTTCCGACT+TGG + tig0019570:135630-135649 None:intergenic 35.0%
ACGTCAGCATATTATAAGAG+GGG + tig0019570:135855-135874 None:intergenic 35.0%
CACGTCAGCATATTATAAGA+GGG + tig0019570:135856-135875 None:intergenic 35.0%
TCACGTCAGCATATTATAAG+AGG + tig0019570:135857-135876 None:intergenic 35.0%
GGTTACATAGAAGAAACAAC+AGG - tig0019570:135927-135946 Msa1374800:intron 35.0%
AACAACAGGACTTAGTAAAC+TGG - tig0019570:135941-135960 Msa1374800:intron 35.0%
ACAACAGGACTTAGTAAACT+GGG - tig0019570:135942-135961 Msa1374800:intron 35.0%
AAGCATCAGATTTGGATTAC+GGG + tig0019570:136041-136060 None:intergenic 35.0%
CAAGCATCAGATTTGGATTA+CGG + tig0019570:136042-136061 None:intergenic 35.0%
TTGTATCGTTCGATTGTACA+AGG - tig0019570:136141-136160 Msa1374800:intron 35.0%
ACGATATTGACAACATTGTG+TGG - tig0019570:136170-136189 Msa1374800:intron 35.0%
ACATTGTGTGGACATTAGAT+AGG - tig0019570:136182-136201 Msa1374800:intron 35.0%
! TTTGGAGTTTCTGAACTTTG+TGG + tig0019570:136296-136315 None:intergenic 35.0%
ATGAAGAAGAAAGCTGTACA+AGG + tig0019570:136492-136511 None:intergenic 35.0%
! GTTCATTCTTTGAGGATGTA+AGG - tig0019570:136547-136566 Msa1374800:intron 35.0%
GTACGCAATAAACTTGATGA+TGG - tig0019570:136605-136624 Msa1374800:intron 35.0%
AAAATCGATAAGCAAGTGCA+TGG + tig0019570:137089-137108 None:intergenic 35.0%
TCAATTCACACACACATAAC+TGG - tig0019570:137479-137498 Msa1374800:CDS 35.0%
!! AGATGTTTAGGCTTTGGATT+TGG - tig0019570:137523-137542 Msa1374800:CDS 35.0%
TGCTTCAATTTGTGTTGTAC+TGG - tig0019570:137572-137591 Msa1374800:five_prime_UTR 35.0%
! TCAATTTGTGTTGTACTGGT+TGG - tig0019570:137576-137595 Msa1374800:five_prime_UTR 35.0%
!! CAATTTGTGTTGTACTGGTT+GGG - tig0019570:137577-137596 Msa1374800:five_prime_UTR 35.0%
AACTGAAATTCCATACAGTG+TGG + tig0019570:137640-137659 None:intergenic 35.0%
TGAATGTCTCGAAGTTACTG+CGG + tig0019570:133898-133917 None:intergenic 40.0%
TGAACGGAATTCACGAAGAT+TGG + tig0019570:134005-134024 None:intergenic 40.0%
AGAGTTTGAGGGTTCATAAG+AGG + tig0019570:134046-134065 None:intergenic 40.0%
ATGATGATTACGTGTGAGGA+GGG + tig0019570:134131-134150 None:intergenic 40.0%
GAAGATGATGATTACGTGTG+AGG + tig0019570:134135-134154 None:intergenic 40.0%
GATTTGACAGGGTTATCATC+TGG + tig0019570:134271-134290 None:intergenic 40.0%
! TCACAAGCTCTGATTTGACA+GGG + tig0019570:134282-134301 None:intergenic 40.0%
ATCATCAGTGTCTATGTGTC+AGG + tig0019570:134588-134607 None:intergenic 40.0%
AACATAGTAGAAGGTCGCAA+TGG + tig0019570:134798-134817 None:intergenic 40.0%
GCAGCTTGAACAGAAATAGA+TGG + tig0019570:135085-135104 None:intergenic 40.0%
! AAAGCACAGAGGGAACTTTT+TGG - tig0019570:135124-135143 Msa1374800:intron 40.0%
GCAGTGCGGATTTACAAATT+AGG - tig0019570:135339-135358 Msa1374800:intron 40.0%
TGTGACAAAGGATCATAGCA+CGG - tig0019570:135500-135519 Msa1374800:intron 40.0%
TAGAAAGACCTAACCATAGG+TGG + tig0019570:135673-135692 None:intergenic 40.0%
! AGGAGATTTGGTAGAGACAT+TGG + tig0019570:135776-135795 None:intergenic 40.0%
TTATAAGAGGGGGAACGAAT+GGG + tig0019570:135844-135863 None:intergenic 40.0%
ATTATAAGAGGGGGAACGAA+TGG + tig0019570:135845-135864 None:intergenic 40.0%
CGTCAGCATATTATAAGAGG+GGG + tig0019570:135854-135873 None:intergenic 40.0%
TTATGGGCAAGCATCAGATT+TGG + tig0019570:136049-136068 None:intergenic 40.0%
!! TAGGATCAGGTTGGGATTAT+GGG + tig0019570:136065-136084 None:intergenic 40.0%
CTTGAGCCTTCAAAACTTGT+AGG - tig0019570:136117-136136 Msa1374800:intron 40.0%
ATATGATGCTGATATGCCCA+CGG - tig0019570:136337-136356 Msa1374800:CDS 40.0%
!! TATGTATCTAGGAGTACCGT+GGG + tig0019570:136356-136375 None:intergenic 40.0%
!! ATATGTATCTAGGAGTACCG+TGG + tig0019570:136357-136376 None:intergenic 40.0%
! GGATCTTCAAGGCAAGTTTT+TGG + tig0019570:136471-136490 None:intergenic 40.0%
AAGCTGTACAAGGATCTTCA+AGG + tig0019570:136482-136501 None:intergenic 40.0%
TTTAATGCAGAGTCGTTGCT+TGG - tig0019570:136632-136651 Msa1374800:CDS 40.0%
TTGTGATACCGACACTGATA+AGG - tig0019570:136776-136795 Msa1374800:intron 40.0%
TGTGATACCGACACTGATAA+GGG - tig0019570:136777-136796 Msa1374800:intron 40.0%
CTGTAACTTTCCTTTGCCAA+TGG - tig0019570:137378-137397 Msa1374800:CDS 40.0%
ATGTGTGTGTGAATTGAGAG+AGG + tig0019570:137476-137495 None:intergenic 40.0%
CACACACATAACTGGACATA+TGG - tig0019570:137487-137506 Msa1374800:CDS 40.0%
AATTCCATACAGTGTGGATG+AGG + tig0019570:137634-137653 None:intergenic 40.0%
! AGTTGGATTTTGGATGTTGG+TGG - tig0019570:137672-137691 Msa1374800:five_prime_UTR 40.0%
GGAAGTGAAAGTGAAAGCTG+TGG - tig0019570:133935-133954 Msa1374800:three_prime_UTR 45.0%
AGTGAAAGTGAAAGCTGTGG+AGG - tig0019570:133938-133957 Msa1374800:three_prime_UTR 45.0%
TTCACGAAGATTGGAGAGAG+TGG + tig0019570:133996-134015 None:intergenic 45.0%
GAAGTTGGGAGAGAGTTTGA+GGG + tig0019570:134057-134076 None:intergenic 45.0%
ACGTTCAAGAGGTGGAAGTT+GGG + tig0019570:134071-134090 None:intergenic 45.0%
!! GGGTAGAAGTGATTTTGGAG+AGG + tig0019570:134111-134130 None:intergenic 45.0%
! GAGGAGGGTAGAAGTGATTT+TGG + tig0019570:134116-134135 None:intergenic 45.0%
GATGATGATTACGTGTGAGG+AGG + tig0019570:134132-134151 None:intergenic 45.0%
! CTCACAAGCTCTGATTTGAC+AGG + tig0019570:134283-134302 None:intergenic 45.0%
CAGAGTAAGCAACAAGGGTT+AGG + tig0019570:134336-134355 None:intergenic 45.0%
GCACCAACACCTCATATTGA+AGG + tig0019570:134685-134704 None:intergenic 45.0%
AACCAAGTTAACAACCCACC+TGG + tig0019570:134873-134892 None:intergenic 45.0%
! TGGTTTATTGCTTCTAGGGG+TGG - tig0019570:134888-134907 Msa1374800:intron 45.0%
GGGAAAGAAGAGGAAACATC+AGG - tig0019570:135018-135037 Msa1374800:intron 45.0%
! AGTTTCTGGAGAAAGCACAG+AGG - tig0019570:135113-135132 Msa1374800:intron 45.0%
! GTTTCTGGAGAAAGCACAGA+GGG - tig0019570:135114-135133 Msa1374800:intron 45.0%
TCGTTATACTAGCTGCAGTG+CGG - tig0019570:135325-135344 Msa1374800:intron 45.0%
TATAAGAGGGGGAACGAATG+GGG + tig0019570:135843-135862 None:intergenic 45.0%
GAGTAAGAAGGACATTGCAG+AGG - tig0019570:135879-135898 Msa1374800:intron 45.0%
AAGAAGGACATTGCAGAGGA+TGG - tig0019570:135883-135902 Msa1374800:intron 45.0%
!! TGTCCTGTCAAGGTTTGTTG+TGG - tig0019570:135986-136005 Msa1374800:intron 45.0%
AGTCCACAACAAACCTTGAC+AGG + tig0019570:135992-136011 None:intergenic 45.0%
!! CTAGGATCAGGTTGGGATTA+TGG + tig0019570:136066-136085 None:intergenic 45.0%
!!! GTTTTTTTTCCCTTCTCCGC+AGG - tig0019570:137339-137358 Msa1374800:intron 45.0%
AACACAAGCTCCATTGGCAA+AGG + tig0019570:137391-137410 None:intergenic 45.0%
!! TTGTGTTGTACTGGTTGGGA+AGG - tig0019570:137581-137600 Msa1374800:five_prime_UTR 45.0%
ATGTCTCGAAGTTACTGCGG+TGG + tig0019570:133895-133914 None:intergenic 50.0%
ACTGAATCCATCACCGCTTC+GGG + tig0019570:133968-133987 None:intergenic 50.0%
GACTGAATCCATCACCGCTT+CGG + tig0019570:133969-133988 None:intergenic 50.0%
GGAAGTTGGGAGAGAGTTTG+AGG + tig0019570:134058-134077 None:intergenic 50.0%
CACGTTCAAGAGGTGGAAGT+TGG + tig0019570:134072-134091 None:intergenic 50.0%
GGAGAGGAGAAAGAGAGAGT+GGG + tig0019570:134095-134114 None:intergenic 50.0%
TGGAGAGGAGAAAGAGAGAG+TGG + tig0019570:134096-134115 None:intergenic 50.0%
GCAGTGAAATTGAGGTGCAG+TGG - tig0019570:134238-134257 Msa1374800:intron 50.0%
! TTAAGCACATGCGTCGGTGT+TGG - tig0019570:134635-134654 Msa1374800:intron 50.0%
! TAAGCACATGCGTCGGTGTT+GGG - tig0019570:134636-134655 Msa1374800:intron 50.0%
TTAACAACCCACCTGGAGTG+AGG + tig0019570:134866-134885 None:intergenic 50.0%
!! CTCCAGGTGGGTTGTTAACT+TGG - tig0019570:134868-134887 Msa1374800:intron 50.0%
CAGAACAACGGCAGAGAATG+AGG - tig0019570:134978-134997 Msa1374800:intron 50.0%
AGGAACTTAAGTAGCGGCGA+GGG - tig0019570:134998-135017 Msa1374800:intron 50.0%
GAAGAGGAAACATCAGGAGC+AGG - tig0019570:135024-135043 Msa1374800:intron 50.0%
TTCTGTTCAAGCTGCTGCTC+AGG - tig0019570:135090-135109 Msa1374800:intron 50.0%
! GCACAGAGGGAACTTTTTGG+TGG - tig0019570:135127-135146 Msa1374800:intron 50.0%
TCAAACTTGGGATCCTGCCT+AGG - tig0019570:135467-135486 Msa1374800:intron 50.0%
GATCCTTTGTCACACCCTTC+CGG + tig0019570:135494-135513 None:intergenic 50.0%
ATAAGAGGGGGAACGAATGG+GGG + tig0019570:135842-135861 None:intergenic 50.0%
GCTGACGTGAGAGAGTAAGA+AGG - tig0019570:135867-135886 Msa1374800:intron 50.0%
AAGGACATTGCAGAGGATGG+AGG - tig0019570:135886-135905 Msa1374800:intron 50.0%
CATTGCAGAGGATGGAGGAA+CGG - tig0019570:135891-135910 Msa1374800:intron 50.0%
GATGGAGGAACGGATCGATA+AGG - tig0019570:135901-135920 Msa1374800:intron 50.0%
AGGAACGGATCGATAAGGAG+AGG - tig0019570:135906-135925 Msa1374800:intron 50.0%
GGACTTAGTAAACTGGGCTG+TGG - tig0019570:135948-135967 Msa1374800:intron 50.0%
AAGCATGCTGAATCGTGAGC+GGG + tig0019570:136100-136119 None:intergenic 50.0%
CAAGCATGCTGAATCGTGAG+CGG + tig0019570:136101-136120 None:intergenic 50.0%
GCAACTTCTCAGGACACACA+AGG + tig0019570:137052-137071 None:intergenic 50.0%
TGTGTGTCCTGAGAAGTTGC+AGG - tig0019570:137052-137071 Msa1374800:intron 50.0%
TGCTCTTCCTGCAACTTCTC+AGG + tig0019570:137062-137081 None:intergenic 50.0%
CTGACGAACACAAGCTCCAT+TGG + tig0019570:137397-137416 None:intergenic 50.0%
TGGAGCTTGTGTTCGTCAGA+TGG - tig0019570:137398-137417 Msa1374800:CDS 50.0%
CATGCCTCATCCACACTGTA+TGG - tig0019570:137627-137646 Msa1374800:five_prime_UTR 50.0%
TCTCGAAGTTACTGCGGTGG+AGG + tig0019570:133892-133911 None:intergenic 55.0%
AGAGAGTGGGCACGTTCAAG+AGG + tig0019570:134082-134101 None:intergenic 55.0%
TCTTTGCCTGACCTCACTCC+AGG - tig0019570:134852-134871 Msa1374800:intron 55.0%
GAGGAACTTAAGTAGCGGCG+AGG - tig0019570:134997-135016 Msa1374800:intron 55.0%
AGGAAACATCAGGAGCAGGC+TGG - tig0019570:135028-135047 Msa1374800:intron 55.0%
! AGGAGCAGGCTGGTCAAAAG+AGG - tig0019570:135038-135057 Msa1374800:intron 55.0%
AGCTGCTGCTCAGGAGTTTC+TGG - tig0019570:135099-135118 Msa1374800:intron 55.0%
GGAACGAATGGGGGAATAGG+CGG + tig0019570:135833-135852 None:intergenic 55.0%
GTAAACTGGGCTGTGGAACC+TGG - tig0019570:135955-135974 Msa1374800:intron 55.0%
TGACAGGACAGTTTCCAGCC+AGG + tig0019570:135976-135995 None:intergenic 55.0%
GGCTGGAAACTGTCCTGTCA+AGG - tig0019570:135976-135995 Msa1374800:intron 55.0%
!! CGGAGCTCTAGGATCAGGTT+GGG + tig0019570:136073-136092 None:intergenic 55.0%
!! ACGGAGCTCTAGGATCAGGT+TGG + tig0019570:136074-136093 None:intergenic 55.0%
!! GATCACGGAGCTCTAGGATC+AGG + tig0019570:136078-136097 None:intergenic 55.0%
CTGAATCGTGAGCGGGATCA+CGG + tig0019570:136093-136112 None:intergenic 55.0%
!! CTGTGGAGGAGTACCCGAAG+CGG - tig0019570:133952-133971 Msa1374800:three_prime_UTR 60.0%
!! AGGAGTACCCGAAGCGGTGA+TGG - tig0019570:133958-133977 Msa1374800:three_prime_UTR 60.0%
GAGTGGGCACGTTCAAGAGG+TGG + tig0019570:134079-134098 None:intergenic 60.0%
TTGCCTGACCTCACTCCAGG+TGG - tig0019570:134855-134874 Msa1374800:intron 60.0%
TGCCTGACCTCACTCCAGGT+GGG - tig0019570:134856-134875 Msa1374800:intron 60.0%
AACCCACCTGGAGTGAGGTC+AGG + tig0019570:134861-134880 None:intergenic 60.0%
GTAGCGGCGAGGGAAAGAAG+AGG - tig0019570:135008-135027 Msa1374800:intron 60.0%
CTTGGGATCCTGCCTAGGAC+CGG - tig0019570:135472-135491 Msa1374800:intron 60.0%
GATCCTGCCTAGGACCGGAA+GGG - tig0019570:135477-135496 Msa1374800:intron 60.0%
TGTCACACCCTTCCGGTCCT+AGG + tig0019570:135487-135506 None:intergenic 60.0%
! GGACCGGAAGGGTGTGACAA+AGG - tig0019570:135488-135507 Msa1374800:intron 60.0%
GCGGCAGGGTTGCATGTGTT+TGG + tig0019570:135814-135833 None:intergenic 60.0%
GAATGGGGGAATAGGCGGCA+GGG + tig0019570:135828-135847 None:intergenic 60.0%
GGGGGAACGAATGGGGGAAT+AGG + tig0019570:135836-135855 None:intergenic 60.0%
CCACACACACCTGCGGAGAA+GGG + tig0019570:137351-137370 None:intergenic 60.0%
CCTTCTCCGCAGGTGTGTGT+GGG - tig0019570:137349-137368 Msa1374800:intron 60.0%
ACCTCTCCCACACACACCTG+CGG + tig0019570:137358-137377 None:intergenic 60.0%
GGATCCTGCCTAGGACCGGA+AGG - tig0019570:135476-135495 Msa1374800:intron 65.0%
ACACCCTTCCGGTCCTAGGC+AGG + tig0019570:135483-135502 None:intergenic 65.0%
CGAATGGGGGAATAGGCGGC+AGG + tig0019570:135829-135848 None:intergenic 65.0%
ACTGGGCTGTGGAACCTGGC+TGG - tig0019570:135959-135978 Msa1374800:intron 65.0%
GAGCGGGATCACGGAGCTCT+AGG + tig0019570:136084-136103 None:intergenic 65.0%
CCCTTCTCCGCAGGTGTGTG+TGG - tig0019570:137348-137367 Msa1374800:intron 65.0%
CCCACACACACCTGCGGAGA+AGG + tig0019570:137352-137371 None:intergenic 65.0%
TCCGCAGGTGTGTGTGGGAG+AGG - tig0019570:137354-137373 Msa1374800:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0019570 gene 133797 137696 133797 ID=Msa1374800;Name=Msa1374800
tig0019570 mRNA 133797 137696 133797 ID=Msa1374800-mRNA-1;Parent=Msa1374800;Name=Msa1374800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=129|1|1|1|0.8|0.66|6|350|228
tig0019570 exon 133797 134132 133797 ID=Msa1374800-mRNA-1:exon:4102;Parent=Msa1374800-mRNA-1
tig0019570 exon 136218 136512 136218 ID=Msa1374800-mRNA-1:exon:4101;Parent=Msa1374800-mRNA-1
tig0019570 exon 136620 136700 136620 ID=Msa1374800-mRNA-1:exon:4100;Parent=Msa1374800-mRNA-1
tig0019570 exon 137058 137112 137058 ID=Msa1374800-mRNA-1:exon:4099;Parent=Msa1374800-mRNA-1
tig0019570 exon 137196 137251 137196 ID=Msa1374800-mRNA-1:exon:4098;Parent=Msa1374800-mRNA-1
tig0019570 exon 137354 137696 137354 ID=Msa1374800-mRNA-1:exon:4097;Parent=Msa1374800-mRNA-1
tig0019570 five_prime_UTR 137568 137696 137568 ID=Msa1374800-mRNA-1:five_prime_utr;Parent=Msa1374800-mRNA-1
tig0019570 CDS 137354 137567 137354 ID=Msa1374800-mRNA-1:cds;Parent=Msa1374800-mRNA-1
tig0019570 CDS 137196 137251 137196 ID=Msa1374800-mRNA-1:cds;Parent=Msa1374800-mRNA-1
tig0019570 CDS 137058 137112 137058 ID=Msa1374800-mRNA-1:cds;Parent=Msa1374800-mRNA-1
tig0019570 CDS 136620 136700 136620 ID=Msa1374800-mRNA-1:cds;Parent=Msa1374800-mRNA-1
tig0019570 CDS 136232 136512 136232 ID=Msa1374800-mRNA-1:cds;Parent=Msa1374800-mRNA-1
tig0019570 three_prime_UTR 136218 136231 136218 ID=Msa1374800-mRNA-1:three_prime_utr;Parent=Msa1374800-mRNA-1
tig0019570 three_prime_UTR 133797 134132 133797 ID=Msa1374800-mRNA-1:three_prime_utr;Parent=Msa1374800-mRNA-1
Gene Sequence

>Msa1374800

ATGGTGAAAGGAAGTGAAAGTGAAAGCTGTGGAGGAGTACCCGAAGCGGTGATGGATTCAGTCAACACCACTCTCTCCAATCTTCGTGAATTCCGTTCACATTTTCAACAGTTTTTACCTCTTATGAACCCTCAAACTCTCTCCCAACTTCCACCTCTTGAACGTGCCCACTCTCTCTTTCTCCTCTCCAAAATCACTTCTACCCTCCTCACACTGAAATTGAGGTGCAGTGGAGTTCAACCAGATGATAACCCTGTCAAATCAGAGCTTGATAGAGTAGAGTTATATCAAGACAAACTTGAACGCCTTCTAGATTTGAATAAGGCTCCATTGCGACCTTCTACTATGTTGAATTCTCAAGCAGCTACTCGCTTCATCGAACACTCTTTGCCTGACCTCACTCCAGAACAACGGCAGAGAATGAGGAACTTAAGTAGCGGCGAGGGAAAGAAGAGGAAACATCAGGAGCAGGCTGGTCAAAAGAGGAAGTATCAATCTTCTGAAAAGCCATCTATTTCTGTTCAAGCTGCTGCTCAGGAGTTTCTGGAGAAAGCACAGAGGGAACTTTTTGGTGGTAATAATGGCGGTATTAAGGGGCCACTTCAAATTGACAACATGTCAGAAAGCGACGACGATCAAATTGACAATCTTTCAGAAGATGACGGCGATAAACTACCCATGACCTGA

Protein sequence

>Msa1374800

MVKGSESESCGGVPEAVMDSVNTTLSNLREFRSHFQQFLPLMNPQTLSQLPPLERAHSLFLLSKITSTLLTLKLRCSGVQPDDNPVKSELDRVELYQDKLERLLDLNKAPLRPSTMLNSQAATRFIEHSLPDLTPEQRQRMRNLSSGEGKKRKHQEQAGQKRKYQSSEKPSISVQAAAQEFLEKAQRELFGGNNGGIKGPLQIDNMSESDDDQIDNLSEDDGDKLPMT*