AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451830 MtrunA17_Chr3g0136861 97.807 228 5 0 1 228 1 228 4.99e-165 454
Msa1451830 MtrunA17_Chr1g0150121 40.351 171 66 4 1 169 1 137 3.66e-28 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451830 AT5G25080.1 50.000 202 98 2 13 214 16 214 1.97e-69 212

Find 83 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGCTGCTCAGGAGTTTC+TGG 0.118592 tig0033584:-15447 Msa1451830:CDS
AATATATTAAAGTTGGATTT+TGG 0.159125 tig0033584:-12885 Msa1451830:three_prime_UTR
TGGTAATAATGGCGGTATTA+AGG 0.185771 tig0033584:-15399 Msa1451830:CDS
GAGGAGGGTAGAAGTGATTT+TGG 0.247186 tig0033584:+16432 None:intergenic
ACGCCTTCTAGATTTGAATA+AGG 0.277390 tig0033584:-16132 Msa1451830:CDS
CTACCATAGTTCAGAAATTC+AGG 0.310944 tig0033584:+15289 None:intergenic
ATTTCATTAGTTAGATGTTT+AGG 0.316283 tig0033584:-13036 Msa1451830:three_prime_UTR
CAGTTATAATATATTAAAGT+TGG 0.321665 tig0033584:-12892 Msa1451830:three_prime_UTR
TTAGTTAGATGTTTAGGCTT+TGG 0.330093 tig0033584:-13030 Msa1451830:three_prime_UTR
TCAATTCACACACACATAAC+TGG 0.347303 tig0033584:-13068 Msa1451830:three_prime_UTR
CGCCTTCTAGATTTGAATAA+GGG 0.349424 tig0033584:-16131 Msa1451830:intron
GGTAATAATGGCGGTATTAA+GGG 0.353390 tig0033584:-15398 Msa1451830:CDS
TTCTGTTCAAGCTGCTGCTC+AGG 0.368572 tig0033584:-15456 Msa1451830:CDS
TGCTTCAATTTGTGTTGTAC+TGG 0.368687 tig0033584:-12975 Msa1451830:three_prime_UTR
AGATGTTTAGGCTTTGGATT+TGG 0.371676 tig0033584:-13024 Msa1451830:three_prime_UTR
GACTGAATCCATCACCGCTT+CGG 0.381291 tig0033584:+16579 None:intergenic
GGAAGTTGGGAGAGAGTTTG+AGG 0.381337 tig0033584:+16490 None:intergenic
CACACACATAACTGGACATA+TGG 0.390185 tig0033584:-13060 Msa1451830:three_prime_UTR
AGAGTTTGAGGGTTCATAAG+AGG 0.391223 tig0033584:+16502 None:intergenic
TGACCTGAATTTCTGAACTA+TGG 0.391907 tig0033584:-15292 Msa1451830:intron
ACTGAATCCATCACCGCTTC+GGG 0.404917 tig0033584:+16580 None:intergenic
GATTTGACAGGGTTATCATC+TGG 0.415518 tig0033584:+16277 None:intergenic
CCCTTCTCCGCAGGTGTGTG+TGG 0.420952 tig0033584:-13199 Msa1451830:intron
TGAACGGAATTCACGAAGAT+TGG 0.426985 tig0033584:+16543 None:intergenic
TACCCTTATTCAAATCTAGA+AGG 0.427243 tig0033584:+16129 None:intergenic
TGAGAATTCAACATAGTAGA+AGG 0.433685 tig0033584:+15742 None:intergenic
CATGCCTCATCCACACTGTA+TGG 0.436915 tig0033584:-12920 Msa1451830:three_prime_UTR
CACGTTCAAGAGGTGGAAGT+TGG 0.442376 tig0033584:+16476 None:intergenic
TGGAGAGGAGAAAGAGAGAG+TGG 0.446758 tig0033584:+16452 None:intergenic
CAATTTGTGTTGTACTGGTT+GGG 0.448764 tig0033584:-12970 Msa1451830:three_prime_UTR
TCCGCAGGTGTGTGTGGGAG+AGG 0.454268 tig0033584:-13193 Msa1451830:intron
TCTTTGCCTGACCTCACTCC+AGG 0.468606 tig0033584:-15694 Msa1451830:intron
CTGTAACTTTCCTTTGCCAA+TGG 0.477592 tig0033584:-13169 Msa1451830:three_prime_UTR
TCAATTTGTGTTGTACTGGT+TGG 0.482306 tig0033584:-12971 Msa1451830:three_prime_UTR
ATGATGATTACGTGTGAGGA+GGG 0.486690 tig0033584:+16417 None:intergenic
TAGTTCAGAAATTCAGGTCA+TGG 0.488101 tig0033584:+15295 None:intergenic
ACGTTCAAGAGGTGGAAGTT+GGG 0.491157 tig0033584:+16477 None:intergenic
GCAGCTTGAACAGAAATAGA+TGG 0.491461 tig0033584:+15464 None:intergenic
GGGAAAGAAGAGGAAACATC+AGG 0.491988 tig0033584:-15528 Msa1451830:CDS
CTCACAAGCTCTGATTTGAC+AGG 0.494155 tig0033584:+16265 None:intergenic
GAAGTTGGGAGAGAGTTTGA+GGG 0.500143 tig0033584:+16491 None:intergenic
AGGAGTACCCGAAGCGGTGA+TGG 0.509427 tig0033584:-16587 Msa1451830:CDS
AACCCACCTGGAGTGAGGTC+AGG 0.514003 tig0033584:+15688 None:intergenic
CCTTCTCCGCAGGTGTGTGT+GGG 0.517915 tig0033584:-13198 Msa1451830:intron
CTGACGAACACAAGCTCCAT+TGG 0.520526 tig0033584:+13153 None:intergenic
AGGAGCAGGCTGGTCAAAAG+AGG 0.529385 tig0033584:-15508 Msa1451830:CDS
TCTCGAAGTTACTGCGGTGG+AGG 0.530653 tig0033584:+16656 None:intergenic
AGTGAAAGTGAAAGCTGTGG+AGG 0.534576 tig0033584:-16607 Msa1451830:CDS
GAAGAGGAAACATCAGGAGC+AGG 0.536755 tig0033584:-15522 Msa1451830:CDS
CAGAACAACGGCAGAGAATG+AGG 0.541135 tig0033584:-15568 Msa1451830:CDS
AATTCCATACAGTGTGGATG+AGG 0.552515 tig0033584:+12916 None:intergenic
GAGTGGGCACGTTCAAGAGG+TGG 0.552869 tig0033584:+16469 None:intergenic
AGAGAGTGGGCACGTTCAAG+AGG 0.559812 tig0033584:+16466 None:intergenic
TTGTGTTGTACTGGTTGGGA+AGG 0.569963 tig0033584:-12966 Msa1451830:three_prime_UTR
TGGAGCTTGTGTTCGTCAGA+TGG 0.576053 tig0033584:-13149 Msa1451830:three_prime_UTR
GACATGTTGTCAATTTGAAG+TGG 0.576081 tig0033584:+15374 None:intergenic
AGTTCAGAAATTCAGGTCAT+GGG 0.578175 tig0033584:+15296 None:intergenic
TTCACGAAGATTGGAGAGAG+TGG 0.578299 tig0033584:+16552 None:intergenic
GTAATAATGGCGGTATTAAG+GGG 0.582541 tig0033584:-15397 Msa1451830:CDS
AGGAAACATCAGGAGCAGGC+TGG 0.583685 tig0033584:-15518 Msa1451830:CDS
GTTTCTGGAGAAAGCACAGA+GGG 0.589967 tig0033584:-15432 Msa1451830:CDS
AAAACTGTTGAAAATGTGAA+CGG 0.603460 tig0033584:+16527 None:intergenic
GGAGAGGAGAAAGAGAGAGT+GGG 0.607959 tig0033584:+16453 None:intergenic
GACAATCTTTCAGAAGATGA+CGG 0.608692 tig0033584:-15329 Msa1451830:CDS
AGGAACTTAAGTAGCGGCGA+GGG 0.610045 tig0033584:-15548 Msa1451830:CDS
ATGTGTGTGTGAATTGAGAG+AGG 0.618311 tig0033584:+13074 None:intergenic
AACACAAGCTCCATTGGCAA+AGG 0.620080 tig0033584:+13159 None:intergenic
GCAGTGAAATTGAGGTGCAG+TGG 0.625638 tig0033584:-16307 Msa1451830:intron
GGAAGTGAAAGTGAAAGCTG+TGG 0.627299 tig0033584:-16610 Msa1451830:CDS
AACATAGTAGAAGGTCGCAA+TGG 0.635548 tig0033584:+15751 None:intergenic
ATGTCTCGAAGTTACTGCGG+TGG 0.647253 tig0033584:+16653 None:intergenic
GAAGATGATGATTACGTGTG+AGG 0.647831 tig0033584:+16413 None:intergenic
TTAACAACCCACCTGGAGTG+AGG 0.652502 tig0033584:+15683 None:intergenic
GAGGAACTTAAGTAGCGGCG+AGG 0.667273 tig0033584:-15549 Msa1451830:CDS
GATGATGATTACGTGTGAGG+AGG 0.668929 tig0033584:+16416 None:intergenic
TCACAAGCTCTGATTTGACA+GGG 0.674644 tig0033584:+16266 None:intergenic
AACTGAAATTCCATACAGTG+TGG 0.675054 tig0033584:+12910 None:intergenic
CTGTGGAGGAGTACCCGAAG+CGG 0.685892 tig0033584:-16593 Msa1451830:CDS
GTAGCGGCGAGGGAAAGAAG+AGG 0.690376 tig0033584:-15538 Msa1451830:CDS
TTATTTCATATGCAGAACAA+CGG 0.698855 tig0033584:-15580 Msa1451830:intron
AGAATGAGGAACTTAAGTAG+CGG 0.704922 tig0033584:-15554 Msa1451830:CDS
AGTTTCTGGAGAAAGCACAG+AGG 0.726155 tig0033584:-15433 Msa1451830:CDS
TGAATGTCTCGAAGTTACTG+CGG 0.754830 tig0033584:+16650 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATTATAATTCAGAT+GGG + tig0033584:14456-14475 None:intergenic 10.0%
!! TAATAAAATTATAATTCAGA+TGG + tig0033584:14457-14476 None:intergenic 10.0%
!! AAGTAAAAAAATAAAATGAA+AGG - tig0033584:14781-14800 Msa1451830:intron 10.0%
!!! TTTTAAAATGCTTTAAAAAT+TGG + tig0033584:15466-15485 None:intergenic 10.0%
!! ATAAAATTATAATTCAGATG+GGG + tig0033584:14455-14474 None:intergenic 15.0%
!! ACATTAAACTAAACTTAAAT+TGG - tig0033584:14614-14633 Msa1451830:intron 15.0%
!!! AGTACAATATACTTTAATTT+TGG + tig0033584:15386-15405 None:intergenic 15.0%
!!! AAAATATTGATTAATGTGTT+TGG - tig0033584:15487-15506 Msa1451830:CDS 15.0%
!!! AAATATTGATTAATGTGTTT+GGG - tig0033584:15488-15507 Msa1451830:CDS 15.0%
!! TTCATCATGTTATAATTATT+AGG - tig0033584:15579-15598 Msa1451830:intron 15.0%
!! TCATCATGTTATAATTATTA+GGG - tig0033584:15580-15599 Msa1451830:intron 15.0%
!! ATAAAATCATAAATTGAACA+CGG + tig0033584:16191-16210 None:intergenic 15.0%
!!! ATTGTTTAAGTTTATAATCT+AGG - tig0033584:16227-16246 Msa1451830:intron 15.0%
!!! TTTTTAAGAAATGTATATCA+GGG + tig0033584:16311-16330 None:intergenic 15.0%
!!! ATTTTTAAGAAATGTATATC+AGG + tig0033584:16312-16331 None:intergenic 15.0%
!! CAGTTATAATATATTAAAGT+TGG - tig0033584:16728-16747 Msa1451830:five_prime_UTR 15.0%
!!! AATATATTAAAGTTGGATTT+TGG - tig0033584:16735-16754 Msa1451830:five_prime_UTR 15.0%
!! AAAGGGAATAAGAAAAATTA+CGG - tig0033584:12883-12902 Msa1451830:three_prime_UTR 20.0%
!! ATAGAACAAGAAAATTAAGT+TGG + tig0033584:13274-13293 None:intergenic 20.0%
!! AAGTTCAAAATATAAGATGA+TGG - tig0033584:13578-13597 Msa1451830:intron 20.0%
!! AAGTCTAAGCTAATAAAAAA+GGG + tig0033584:13794-13813 None:intergenic 20.0%
!! CATAAATTAATTAACCAAGT+CGG - tig0033584:14687-14706 Msa1451830:intron 20.0%
!!! ATATTATGTTAGTTTTTCTC+AGG + tig0033584:14819-14838 None:intergenic 20.0%
!! AAATCTTAAAAATGTAGGAT+TGG + tig0033584:15088-15107 None:intergenic 20.0%
!! GTAGAATTAGTAAAATACTT+CGG + tig0033584:15313-15332 None:intergenic 20.0%
!!! TAAAATGCTTTAAAAATTGG+AGG + tig0033584:15463-15482 None:intergenic 20.0%
!! CATCATGTTATAATTATTAG+GGG - tig0033584:15581-15600 Msa1451830:intron 20.0%
!! AAGGGAAAAAATTATATTTG+TGG - tig0033584:15868-15887 Msa1451830:intron 20.0%
!! TAAAATCATAAATTGAACAC+GGG + tig0033584:16190-16209 None:intergenic 20.0%
!!! TTGTTTCTGTTAGAATTTTA+TGG - tig0033584:16276-16295 Msa1451830:CDS 20.0%
!! ATTTCATTAGTTAGATGTTT+AGG - tig0033584:16584-16603 Msa1451830:CDS 20.0%
!! ATTTAAAAGCCCTAGATTTT+AGG - tig0033584:12933-12952 Msa1451830:three_prime_UTR 25.0%
! AAAACTGTTGAAAATGTGAA+CGG + tig0033584:13096-13115 None:intergenic 25.0%
!!! TATTTTTTGCAGTGAAATTG+AGG - tig0033584:13305-13324 Msa1451830:intron 25.0%
!!! GATTTTTGTTGTGTATTTTC+AGG - tig0033584:13434-13453 Msa1451830:intron 25.0%
!!! AAGATGATGGATATTTGAAT+TGG - tig0033584:13591-13610 Msa1451830:intron 25.0%
! AGTCTAAGCTAATAAAAAAG+GGG + tig0033584:13793-13812 None:intergenic 25.0%
! CAAGTCTAAGCTAATAAAAA+AGG + tig0033584:13795-13814 None:intergenic 25.0%
! TTATTTCATATGCAGAACAA+CGG - tig0033584:14040-14059 Msa1451830:intron 25.0%
! TTACACTCGTAAAGTAAATA+AGG + tig0033584:14372-14391 None:intergenic 25.0%
!!! ACGATTTGATAATGCATTTT+AGG - tig0033584:14476-14495 Msa1451830:intron 25.0%
!!! CGATTTGATAATGCATTTTA+GGG - tig0033584:14477-14496 Msa1451830:intron 25.0%
!!! GATTTGATAATGCATTTTAG+GGG - tig0033584:14478-14497 Msa1451830:intron 25.0%
! AAAAAAAATGTGAGGAGATT+TGG + tig0033584:14862-14881 None:intergenic 25.0%
! TGTTTGGAAAAAAAAATGTG+AGG + tig0033584:14870-14889 None:intergenic 25.0%
!! ATTTACTGTTATTTAACAGC+TGG - tig0033584:15334-15353 Msa1451830:CDS 25.0%
! TAATCTTTGGATATGTATCT+AGG + tig0033584:15439-15458 None:intergenic 25.0%
! AAAAATTGGAGGATAATCTT+TGG + tig0033584:15452-15471 None:intergenic 25.0%
!! TGGAGTTGTATCTAAAATTA+TGG + tig0033584:15523-15542 None:intergenic 25.0%
!! ACAGATTTTACATTGAAGTT+TGG - tig0033584:16024-16043 Msa1451830:intron 25.0%
! TTACATTGAAGTTTGGAAAA+TGG - tig0033584:16031-16050 Msa1451830:intron 25.0%
GCAGAAAAACCTAAAATCTA+GGG + tig0033584:12945-12964 None:intergenic 30.0%
TTCAACACAAAAATGGTGAA+AGG - tig0033584:12989-13008 Msa1451830:three_prime_UTR 30.0%
TACCCTTATTCAAATCTAGA+AGG + tig0033584:13494-13513 None:intergenic 30.0%
ACATGTTAACCTTCAATATG+AGG - tig0033584:13747-13766 Msa1451830:intron 30.0%
TTAGCTTAGACTTGTAGTAT+TGG - tig0033584:13801-13820 Msa1451830:intron 30.0%
! TGATTGTGTTTTCGTGATTT+TGG - tig0033584:13830-13849 Msa1451830:intron 30.0%
TGAGAATTCAACATAGTAGA+AGG + tig0033584:13881-13900 None:intergenic 30.0%
TAACTTGGTTTATTGCTTCT+AGG - tig0033584:13957-13976 Msa1451830:intron 30.0%
AACTTGGTTTATTGCTTCTA+GGG - tig0033584:13958-13977 Msa1451830:intron 30.0%
TACATGCAATGTGATCAAAA+TGG + tig0033584:14007-14026 None:intergenic 30.0%
ATTGCATGTATGTAAAGAAG+TGG - tig0033584:14017-14036 Msa1451830:intron 30.0%
!! GAACTTTTTGGTGGTAATAA+TGG - tig0033584:14210-14229 Msa1451830:intron 30.0%
ATCCCAAGTTTGAAAACATT+GGG + tig0033584:14534-14553 None:intergenic 30.0%
!!! AGTTGATTTTTTTCCACCTA+TGG - tig0033584:14731-14750 Msa1451830:intron 30.0%
!!! ATTTTTTTCCACCTATGGTT+AGG - tig0033584:14736-14755 Msa1451830:intron 30.0%
AATTAGAAAGACCTAACCAT+AGG + tig0033584:14750-14769 None:intergenic 30.0%
GGGCAAAATCTTAAAAATGT+AGG + tig0033584:15093-15112 None:intergenic 30.0%
!! TACAATCCTACAAGTTTTGA+AGG + tig0033584:15198-15217 None:intergenic 30.0%
ACTTATCTGTTCATTCTTTG+AGG - tig0033584:15611-15630 Msa1451830:intron 30.0%
GATGTAAGGAATAAAAAACG+TGG - tig0033584:15633-15652 Msa1451830:intron 30.0%
TGTCGGTATCACAAAAAATT+AGG + tig0033584:15843-15862 None:intergenic 30.0%
!!! ATTTTTTCCCTTATCAGTGT+CGG + tig0033584:15860-15879 None:intergenic 30.0%
TTAGTTAGATGTTTAGGCTT+TGG - tig0033584:16590-16609 Msa1451830:CDS 30.0%
! TAAAGTTGGATTTTGGATGT+TGG - tig0033584:16742-16761 Msa1451830:five_prime_UTR 30.0%
GGCAGAAAAACCTAAAATCT+AGG + tig0033584:12946-12965 None:intergenic 35.0%
CGAGACATTCAACACAAAAA+TGG - tig0033584:12982-13001 Msa1451830:three_prime_UTR 35.0%
TCAAACAGAGTAAGCAACAA+GGG + tig0033584:13416-13435 None:intergenic 35.0%
ATCAAACAGAGTAAGCAACA+AGG + tig0033584:13417-13436 None:intergenic 35.0%
ACGCCTTCTAGATTTGAATA+AGG - tig0033584:13488-13507 Msa1451830:intron 35.0%
CGCCTTCTAGATTTGAATAA+GGG - tig0033584:13489-13508 Msa1451830:intron 35.0%
TTGAATTTAAGCACATGCGT+CGG - tig0033584:13703-13722 Msa1451830:intron 35.0%
TAACCTTCAATATGAGGTGT+TGG - tig0033584:13753-13772 Msa1451830:intron 35.0%
ACTTGGTTTATTGCTTCTAG+GGG - tig0033584:13959-13978 Msa1451830:intron 35.0%
AGAATGAGGAACTTAAGTAG+CGG - tig0033584:14066-14085 Msa1451830:intron 35.0%
!! CTTTTTGGTGGTAATAATGG+CGG - tig0033584:14213-14232 Msa1451830:intron 35.0%
TGGTAATAATGGCGGTATTA+AGG - tig0033584:14221-14240 Msa1451830:intron 35.0%
GGTAATAATGGCGGTATTAA+GGG - tig0033584:14222-14241 Msa1451830:intron 35.0%
GTAATAATGGCGGTATTAAG+GGG - tig0033584:14223-14242 Msa1451830:intron 35.0%
GACATGTTGTCAATTTGAAG+TGG + tig0033584:14249-14268 None:intergenic 35.0%
GACAATCTTTCAGAAGATGA+CGG - tig0033584:14291-14310 Msa1451830:intron 35.0%
AGTTCAGAAATTCAGGTCAT+GGG + tig0033584:14327-14346 None:intergenic 35.0%
TAGTTCAGAAATTCAGGTCA+TGG + tig0033584:14328-14347 None:intergenic 35.0%
TGACCTGAATTTCTGAACTA+TGG - tig0033584:14328-14347 Msa1451830:intron 35.0%
CTACCATAGTTCAGAAATTC+AGG + tig0033584:14334-14353 None:intergenic 35.0%
CAGTGCGGATTTACAAATTA+GGG - tig0033584:14414-14433 Msa1451830:intron 35.0%
! AGACCCAATGTTTTCAAACT+TGG - tig0033584:14528-14547 Msa1451830:intron 35.0%
! GACCCAATGTTTTCAAACTT+GGG - tig0033584:14529-14548 Msa1451830:intron 35.0%
GATCCCAAGTTTGAAAACAT+TGG + tig0033584:14535-14554 None:intergenic 35.0%
!!! TAGTTTTTTCACTTCCGACT+TGG + tig0033584:14704-14723 None:intergenic 35.0%
ACGTCAGCATATTATAAGAG+GGG + tig0033584:14927-14946 None:intergenic 35.0%
CACGTCAGCATATTATAAGA+GGG + tig0033584:14928-14947 None:intergenic 35.0%
TCACGTCAGCATATTATAAG+AGG + tig0033584:14929-14948 None:intergenic 35.0%
GGTTACATAGAAGAAACAAC+AGG - tig0033584:14999-15018 Msa1451830:intron 35.0%
AACAACAGGACTTAGTAAAC+TGG - tig0033584:15013-15032 Msa1451830:intron 35.0%
ACAACAGGACTTAGTAAACT+GGG - tig0033584:15014-15033 Msa1451830:intron 35.0%
AAGCATCAGATTTGGATTAC+GGG + tig0033584:15113-15132 None:intergenic 35.0%
CAAGCATCAGATTTGGATTA+CGG + tig0033584:15114-15133 None:intergenic 35.0%
TTGTATCGTTCGATTGTACA+AGG - tig0033584:15213-15232 Msa1451830:intron 35.0%
ACGATATTGACAACATTGTG+TGG - tig0033584:15242-15261 Msa1451830:intron 35.0%
ACATTGTGTGGACATTAGAT+AGG - tig0033584:15254-15273 Msa1451830:intron 35.0%
! TTTGGAGTTTCTGAACTTTG+TGG + tig0033584:15368-15387 None:intergenic 35.0%
ATGAAGAAGAAAGCTGTACA+AGG + tig0033584:15564-15583 None:intergenic 35.0%
! GTTCATTCTTTGAGGATGTA+AGG - tig0033584:15619-15638 Msa1451830:intron 35.0%
GTACGCAATAAACTTGATGA+TGG - tig0033584:15677-15696 Msa1451830:intron 35.0%
AAAATCGATAAGCAAGTGCA+TGG + tig0033584:16162-16181 None:intergenic 35.0%
TCAATTCACACACACATAAC+TGG - tig0033584:16552-16571 Msa1451830:CDS 35.0%
!! AGATGTTTAGGCTTTGGATT+TGG - tig0033584:16596-16615 Msa1451830:CDS 35.0%
TGCTTCAATTTGTGTTGTAC+TGG - tig0033584:16645-16664 Msa1451830:five_prime_UTR 35.0%
! TCAATTTGTGTTGTACTGGT+TGG - tig0033584:16649-16668 Msa1451830:five_prime_UTR 35.0%
!! CAATTTGTGTTGTACTGGTT+GGG - tig0033584:16650-16669 Msa1451830:five_prime_UTR 35.0%
AACTGAAATTCCATACAGTG+TGG + tig0033584:16713-16732 None:intergenic 35.0%
TGAATGTCTCGAAGTTACTG+CGG + tig0033584:12973-12992 None:intergenic 40.0%
TGAACGGAATTCACGAAGAT+TGG + tig0033584:13080-13099 None:intergenic 40.0%
AGAGTTTGAGGGTTCATAAG+AGG + tig0033584:13121-13140 None:intergenic 40.0%
ATGATGATTACGTGTGAGGA+GGG + tig0033584:13206-13225 None:intergenic 40.0%
GAAGATGATGATTACGTGTG+AGG + tig0033584:13210-13229 None:intergenic 40.0%
GATTTGACAGGGTTATCATC+TGG + tig0033584:13346-13365 None:intergenic 40.0%
! TCACAAGCTCTGATTTGACA+GGG + tig0033584:13357-13376 None:intergenic 40.0%
ATCATCAGTGTCTATGTGTC+AGG + tig0033584:13662-13681 None:intergenic 40.0%
AACATAGTAGAAGGTCGCAA+TGG + tig0033584:13872-13891 None:intergenic 40.0%
GCAGCTTGAACAGAAATAGA+TGG + tig0033584:14159-14178 None:intergenic 40.0%
! AAAGCACAGAGGGAACTTTT+TGG - tig0033584:14198-14217 Msa1451830:intron 40.0%
GCAGTGCGGATTTACAAATT+AGG - tig0033584:14413-14432 Msa1451830:intron 40.0%
TGTGACAAAGGATCATAGCA+CGG - tig0033584:14574-14593 Msa1451830:intron 40.0%
TAGAAAGACCTAACCATAGG+TGG + tig0033584:14747-14766 None:intergenic 40.0%
! AGGAGATTTGGTAGAGACAT+TGG + tig0033584:14850-14869 None:intergenic 40.0%
TTATAAGAGGGGGAACGAAT+GGG + tig0033584:14916-14935 None:intergenic 40.0%
ATTATAAGAGGGGGAACGAA+TGG + tig0033584:14917-14936 None:intergenic 40.0%
CGTCAGCATATTATAAGAGG+GGG + tig0033584:14926-14945 None:intergenic 40.0%
TTATGGGCAAGCATCAGATT+TGG + tig0033584:15121-15140 None:intergenic 40.0%
!! TAGGATCAGGTTGGGATTAT+GGG + tig0033584:15137-15156 None:intergenic 40.0%
CTTGAGCCTTCAAAACTTGT+AGG - tig0033584:15189-15208 Msa1451830:intron 40.0%
ATATGATGCTGATATGCCCA+CGG - tig0033584:15409-15428 Msa1451830:CDS 40.0%
!! TATGTATCTAGGAGTACCGT+GGG + tig0033584:15428-15447 None:intergenic 40.0%
!! ATATGTATCTAGGAGTACCG+TGG + tig0033584:15429-15448 None:intergenic 40.0%
! GGATCTTCAAGGCAAGTTTT+TGG + tig0033584:15543-15562 None:intergenic 40.0%
AAGCTGTACAAGGATCTTCA+AGG + tig0033584:15554-15573 None:intergenic 40.0%
TTTAATGCAGAGTCGTTGCT+TGG - tig0033584:15705-15724 Msa1451830:CDS 40.0%
TTGTGATACCGACACTGATA+AGG - tig0033584:15849-15868 Msa1451830:intron 40.0%
TGTGATACCGACACTGATAA+GGG - tig0033584:15850-15869 Msa1451830:intron 40.0%
CTGTAACTTTCCTTTGCCAA+TGG - tig0033584:16451-16470 Msa1451830:CDS 40.0%
ATGTGTGTGTGAATTGAGAG+AGG + tig0033584:16549-16568 None:intergenic 40.0%
CACACACATAACTGGACATA+TGG - tig0033584:16560-16579 Msa1451830:CDS 40.0%
AATTCCATACAGTGTGGATG+AGG + tig0033584:16707-16726 None:intergenic 40.0%
! AGTTGGATTTTGGATGTTGG+TGG - tig0033584:16745-16764 Msa1451830:five_prime_UTR 40.0%
GGAAGTGAAAGTGAAAGCTG+TGG - tig0033584:13010-13029 Msa1451830:three_prime_UTR 45.0%
AGTGAAAGTGAAAGCTGTGG+AGG - tig0033584:13013-13032 Msa1451830:three_prime_UTR 45.0%
TTCACGAAGATTGGAGAGAG+TGG + tig0033584:13071-13090 None:intergenic 45.0%
GAAGTTGGGAGAGAGTTTGA+GGG + tig0033584:13132-13151 None:intergenic 45.0%
ACGTTCAAGAGGTGGAAGTT+GGG + tig0033584:13146-13165 None:intergenic 45.0%
!! GGGTAGAAGTGATTTTGGAG+AGG + tig0033584:13186-13205 None:intergenic 45.0%
! GAGGAGGGTAGAAGTGATTT+TGG + tig0033584:13191-13210 None:intergenic 45.0%
GATGATGATTACGTGTGAGG+AGG + tig0033584:13207-13226 None:intergenic 45.0%
! CTCACAAGCTCTGATTTGAC+AGG + tig0033584:13358-13377 None:intergenic 45.0%
CAGAGTAAGCAACAAGGGTT+AGG + tig0033584:13411-13430 None:intergenic 45.0%
GCACCAACACCTCATATTGA+AGG + tig0033584:13759-13778 None:intergenic 45.0%
AACCAAGTTAACAACCCACC+TGG + tig0033584:13947-13966 None:intergenic 45.0%
! TGGTTTATTGCTTCTAGGGG+TGG - tig0033584:13962-13981 Msa1451830:intron 45.0%
GGGAAAGAAGAGGAAACATC+AGG - tig0033584:14092-14111 Msa1451830:intron 45.0%
! AGTTTCTGGAGAAAGCACAG+AGG - tig0033584:14187-14206 Msa1451830:intron 45.0%
! GTTTCTGGAGAAAGCACAGA+GGG - tig0033584:14188-14207 Msa1451830:intron 45.0%
TCGTTATACTAGCTGCAGTG+CGG - tig0033584:14399-14418 Msa1451830:intron 45.0%
TATAAGAGGGGGAACGAATG+GGG + tig0033584:14915-14934 None:intergenic 45.0%
GAGTAAGAAGGACATTGCAG+AGG - tig0033584:14951-14970 Msa1451830:intron 45.0%
AAGAAGGACATTGCAGAGGA+TGG - tig0033584:14955-14974 Msa1451830:intron 45.0%
!! TGTCCTGTCAAGGTTTGTTG+TGG - tig0033584:15058-15077 Msa1451830:intron 45.0%
AGTCCACAACAAACCTTGAC+AGG + tig0033584:15064-15083 None:intergenic 45.0%
!! CTAGGATCAGGTTGGGATTA+TGG + tig0033584:15138-15157 None:intergenic 45.0%
!!! GTTTTTTTTCCCTTCTCCGC+AGG - tig0033584:16412-16431 Msa1451830:intron 45.0%
AACACAAGCTCCATTGGCAA+AGG + tig0033584:16464-16483 None:intergenic 45.0%
!! TTGTGTTGTACTGGTTGGGA+AGG - tig0033584:16654-16673 Msa1451830:five_prime_UTR 45.0%
ATGTCTCGAAGTTACTGCGG+TGG + tig0033584:12970-12989 None:intergenic 50.0%
ACTGAATCCATCACCGCTTC+GGG + tig0033584:13043-13062 None:intergenic 50.0%
GACTGAATCCATCACCGCTT+CGG + tig0033584:13044-13063 None:intergenic 50.0%
GGAAGTTGGGAGAGAGTTTG+AGG + tig0033584:13133-13152 None:intergenic 50.0%
CACGTTCAAGAGGTGGAAGT+TGG + tig0033584:13147-13166 None:intergenic 50.0%
GGAGAGGAGAAAGAGAGAGT+GGG + tig0033584:13170-13189 None:intergenic 50.0%
TGGAGAGGAGAAAGAGAGAG+TGG + tig0033584:13171-13190 None:intergenic 50.0%
GCAGTGAAATTGAGGTGCAG+TGG - tig0033584:13313-13332 Msa1451830:intron 50.0%
! TTAAGCACATGCGTCGGTGT+TGG - tig0033584:13709-13728 Msa1451830:intron 50.0%
! TAAGCACATGCGTCGGTGTT+GGG - tig0033584:13710-13729 Msa1451830:intron 50.0%
TTAACAACCCACCTGGAGTG+AGG + tig0033584:13940-13959 None:intergenic 50.0%
!! CTCCAGGTGGGTTGTTAACT+TGG - tig0033584:13942-13961 Msa1451830:intron 50.0%
CAGAACAACGGCAGAGAATG+AGG - tig0033584:14052-14071 Msa1451830:intron 50.0%
AGGAACTTAAGTAGCGGCGA+GGG - tig0033584:14072-14091 Msa1451830:intron 50.0%
GAAGAGGAAACATCAGGAGC+AGG - tig0033584:14098-14117 Msa1451830:intron 50.0%
TTCTGTTCAAGCTGCTGCTC+AGG - tig0033584:14164-14183 Msa1451830:intron 50.0%
! GCACAGAGGGAACTTTTTGG+TGG - tig0033584:14201-14220 Msa1451830:intron 50.0%
TCAAACTTGGGATCCTGCCT+AGG - tig0033584:14541-14560 Msa1451830:intron 50.0%
GATCCTTTGTCACACCCTTC+CGG + tig0033584:14568-14587 None:intergenic 50.0%
ATAAGAGGGGGAACGAATGG+GGG + tig0033584:14914-14933 None:intergenic 50.0%
GCTGACGTGAGAGAGTAAGA+AGG - tig0033584:14939-14958 Msa1451830:intron 50.0%
AAGGACATTGCAGAGGATGG+AGG - tig0033584:14958-14977 Msa1451830:intron 50.0%
CATTGCAGAGGATGGAGGAA+CGG - tig0033584:14963-14982 Msa1451830:intron 50.0%
GATGGAGGAACGGATCGATA+AGG - tig0033584:14973-14992 Msa1451830:intron 50.0%
AGGAACGGATCGATAAGGAG+AGG - tig0033584:14978-14997 Msa1451830:intron 50.0%
GGACTTAGTAAACTGGGCTG+TGG - tig0033584:15020-15039 Msa1451830:intron 50.0%
AAGCATGCTGAATCGTGAGC+GGG + tig0033584:15172-15191 None:intergenic 50.0%
CAAGCATGCTGAATCGTGAG+CGG + tig0033584:15173-15192 None:intergenic 50.0%
GCAACTTCTCAGGACACACA+AGG + tig0033584:16125-16144 None:intergenic 50.0%
TGTGTGTCCTGAGAAGTTGC+AGG - tig0033584:16125-16144 Msa1451830:intron 50.0%
TGCTCTTCCTGCAACTTCTC+AGG + tig0033584:16135-16154 None:intergenic 50.0%
CTGACGAACACAAGCTCCAT+TGG + tig0033584:16470-16489 None:intergenic 50.0%
TGGAGCTTGTGTTCGTCAGA+TGG - tig0033584:16471-16490 Msa1451830:CDS 50.0%
CATGCCTCATCCACACTGTA+TGG - tig0033584:16700-16719 Msa1451830:five_prime_UTR 50.0%
TCTCGAAGTTACTGCGGTGG+AGG + tig0033584:12967-12986 None:intergenic 55.0%
AGAGAGTGGGCACGTTCAAG+AGG + tig0033584:13157-13176 None:intergenic 55.0%
TCTTTGCCTGACCTCACTCC+AGG - tig0033584:13926-13945 Msa1451830:intron 55.0%
GAGGAACTTAAGTAGCGGCG+AGG - tig0033584:14071-14090 Msa1451830:intron 55.0%
AGGAAACATCAGGAGCAGGC+TGG - tig0033584:14102-14121 Msa1451830:intron 55.0%
! AGGAGCAGGCTGGTCAAAAG+AGG - tig0033584:14112-14131 Msa1451830:intron 55.0%
AGCTGCTGCTCAGGAGTTTC+TGG - tig0033584:14173-14192 Msa1451830:intron 55.0%
GGAACGAATGGGGGAATAGG+CGG + tig0033584:14905-14924 None:intergenic 55.0%
GTAAACTGGGCTGTGGAACC+TGG - tig0033584:15027-15046 Msa1451830:intron 55.0%
TGACAGGACAGTTTCCAGCC+AGG + tig0033584:15048-15067 None:intergenic 55.0%
GGCTGGAAACTGTCCTGTCA+AGG - tig0033584:15048-15067 Msa1451830:intron 55.0%
!! CGGAGCTCTAGGATCAGGTT+GGG + tig0033584:15145-15164 None:intergenic 55.0%
!! ACGGAGCTCTAGGATCAGGT+TGG + tig0033584:15146-15165 None:intergenic 55.0%
!! GATCACGGAGCTCTAGGATC+AGG + tig0033584:15150-15169 None:intergenic 55.0%
CTGAATCGTGAGCGGGATCA+CGG + tig0033584:15165-15184 None:intergenic 55.0%
!! CTGTGGAGGAGTACCCGAAG+CGG - tig0033584:13027-13046 Msa1451830:three_prime_UTR 60.0%
!! AGGAGTACCCGAAGCGGTGA+TGG - tig0033584:13033-13052 Msa1451830:three_prime_UTR 60.0%
GAGTGGGCACGTTCAAGAGG+TGG + tig0033584:13154-13173 None:intergenic 60.0%
TTGCCTGACCTCACTCCAGG+TGG - tig0033584:13929-13948 Msa1451830:intron 60.0%
TGCCTGACCTCACTCCAGGT+GGG - tig0033584:13930-13949 Msa1451830:intron 60.0%
AACCCACCTGGAGTGAGGTC+AGG + tig0033584:13935-13954 None:intergenic 60.0%
GTAGCGGCGAGGGAAAGAAG+AGG - tig0033584:14082-14101 Msa1451830:intron 60.0%
CTTGGGATCCTGCCTAGGAC+CGG - tig0033584:14546-14565 Msa1451830:intron 60.0%
GATCCTGCCTAGGACCGGAA+GGG - tig0033584:14551-14570 Msa1451830:intron 60.0%
TGTCACACCCTTCCGGTCCT+AGG + tig0033584:14561-14580 None:intergenic 60.0%
! GGACCGGAAGGGTGTGACAA+AGG - tig0033584:14562-14581 Msa1451830:intron 60.0%
GCGGCAGGGTTGCATGTGTT+TGG + tig0033584:14886-14905 None:intergenic 60.0%
GAATGGGGGAATAGGCGGCA+GGG + tig0033584:14900-14919 None:intergenic 60.0%
GGGGGAACGAATGGGGGAAT+AGG + tig0033584:14908-14927 None:intergenic 60.0%
CCACACACACCTGCGGAGAA+GGG + tig0033584:16424-16443 None:intergenic 60.0%
CCTTCTCCGCAGGTGTGTGT+GGG - tig0033584:16422-16441 Msa1451830:intron 60.0%
ACCTCTCCCACACACACCTG+CGG + tig0033584:16431-16450 None:intergenic 60.0%
GGATCCTGCCTAGGACCGGA+AGG - tig0033584:14550-14569 Msa1451830:intron 65.0%
ACACCCTTCCGGTCCTAGGC+AGG + tig0033584:14557-14576 None:intergenic 65.0%
CGAATGGGGGAATAGGCGGC+AGG + tig0033584:14901-14920 None:intergenic 65.0%
ACTGGGCTGTGGAACCTGGC+TGG - tig0033584:15031-15050 Msa1451830:intron 65.0%
GAGCGGGATCACGGAGCTCT+AGG + tig0033584:15156-15175 None:intergenic 65.0%
CCCTTCTCCGCAGGTGTGTG+TGG - tig0033584:16421-16440 Msa1451830:intron 65.0%
CCCACACACACCTGCGGAGA+AGG + tig0033584:16425-16444 None:intergenic 65.0%
TCCGCAGGTGTGTGTGGGAG+AGG - tig0033584:16427-16446 Msa1451830:intron 65.0%
Chromosome Type Strat End Strand Name
tig0033584 gene 12873 16769 12873 ID=Msa1451830;Name=Msa1451830
tig0033584 mRNA 12873 16769 12873 ID=Msa1451830-mRNA-1;Parent=Msa1451830;Name=Msa1451830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=128|1|1|1|0.8|0.66|6|350|228
tig0033584 exon 12873 13208 12873 ID=Msa1451830-mRNA-1:exon:18243;Parent=Msa1451830-mRNA-1
tig0033584 exon 15293 15587 15293 ID=Msa1451830-mRNA-1:exon:18242;Parent=Msa1451830-mRNA-1
tig0033584 exon 15695 15775 15695 ID=Msa1451830-mRNA-1:exon:18241;Parent=Msa1451830-mRNA-1
tig0033584 exon 16132 16186 16132 ID=Msa1451830-mRNA-1:exon:18240;Parent=Msa1451830-mRNA-1
tig0033584 exon 16270 16325 16270 ID=Msa1451830-mRNA-1:exon:18239;Parent=Msa1451830-mRNA-1
tig0033584 exon 16428 16769 16428 ID=Msa1451830-mRNA-1:exon:18238;Parent=Msa1451830-mRNA-1
tig0033584 five_prime_UTR 16642 16769 16642 ID=Msa1451830-mRNA-1:five_prime_utr;Parent=Msa1451830-mRNA-1
tig0033584 CDS 16428 16641 16428 ID=Msa1451830-mRNA-1:cds;Parent=Msa1451830-mRNA-1
tig0033584 CDS 16270 16325 16270 ID=Msa1451830-mRNA-1:cds;Parent=Msa1451830-mRNA-1
tig0033584 CDS 16132 16186 16132 ID=Msa1451830-mRNA-1:cds;Parent=Msa1451830-mRNA-1
tig0033584 CDS 15695 15775 15695 ID=Msa1451830-mRNA-1:cds;Parent=Msa1451830-mRNA-1
tig0033584 CDS 15307 15587 15307 ID=Msa1451830-mRNA-1:cds;Parent=Msa1451830-mRNA-1
tig0033584 three_prime_UTR 15293 15306 15293 ID=Msa1451830-mRNA-1:three_prime_utr;Parent=Msa1451830-mRNA-1
tig0033584 three_prime_UTR 12873 13208 12873 ID=Msa1451830-mRNA-1:three_prime_utr;Parent=Msa1451830-mRNA-1
Gene Sequence

>Msa1451830

ATGGTGAAAGGAAGTGAAAGTGAAAGCTGTGGAGGAGTACCCGAAGCGGTGATGGATTCAGTCAACACCACTCTCTCCAATCTTCGTGAATTCCGTTCACATTTTCAACAGTTTTTACCTCTTATGAACCCTCAAACTCTCTCCCAACTTCCACCTCTTGAACGTGCCCACTCTCTCTTTCTCCTCTCCAAAATCACTTCTACCCTCCTCACACTGAAATTGAGGTGCAGTGGAGTTCAACCAGATGATAACCCTGTCAAATCAGAGCTTGATAGAGTAGAGTTATATCAAGACAAACTTGAACGCCTTCTAGATTTGAATAAGGCTCCATTGCGACCTTCTACTATGTTGAATTCTCAAGCAGCTACTCGCTTCATCGAACACTCTTTGCCTGACCTCACTCCAGAACAACGGCAGAGAATGAGGAACTTAAGTAGCGGCGAGGGAAAGAAGAGGAAACATCAGGAGCAGGCTGGTCAAAAGAGGAAGTATCAATCTTCTGAAAAGCCATCTATTTCTGTTCAAGCTGCTGCTCAGGAGTTTCTGGAGAAAGCACAGAGGGAACTTTTTGGTGGTAATAATGGCGGTATTAAGGGGCCACTTCAAATTGACAACATGTCAGAAAGCGACGACGATCAAATTGACAATCTTTCAGAAGATGACGGCGATAAACTACCCATGACCTGA

Protein sequence

>Msa1451830

MVKGSESESCGGVPEAVMDSVNTTLSNLREFRSHFQQFLPLMNPQTLSQLPPLERAHSLFLLSKITSTLLTLKLRCSGVQPDDNPVKSELDRVELYQDKLERLLDLNKAPLRPSTMLNSQAATRFIEHSLPDLTPEQRQRMRNLSSGEGKKRKHQEQAGQKRKYQSSEKPSISVQAAAQEFLEKAQRELFGGNNGGIKGPLQIDNMSESDDDQIDNLSEDDGDKLPMT*