Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381710 | XP_003610864.1 | 94.737 | 608 | 29 | 3 | 3 | 608 | 1 | 607 | 0.0 | 1187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381710 | sp|Q501D1|Y1490_ARATH | 57.194 | 556 | 227 | 6 | 58 | 607 | 21 | 571 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381710 | G7K6I4 | 94.737 | 608 | 29 | 3 | 3 | 608 | 1 | 607 | 0.0 | 1187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1381710 | Msa1388910 | 0.808564 | 2.911384e-50 | -8.615850e-47 |
| Msa1381710 | Msa1419230 | 0.802293 | 6.009547e-49 | -8.615850e-47 |
| Msa1381710 | Msa1428560 | 0.808661 | 2.775791e-50 | -8.615850e-47 |
| Msa1259010 | Msa1381710 | 0.807425 | 5.086164e-50 | -8.615850e-47 |
| Msa0467480 | Msa1381710 | 0.808444 | 3.087719e-50 | -8.615850e-47 |
| Msa0999820 | Msa1381710 | 0.810338 | 1.211156e-50 | -8.615850e-47 |
| Msa1071470 | Msa1381710 | 0.991601 | 1.606217e-188 | -8.615850e-47 |
| Msa0243820 | Msa1381710 | 0.812177 | 4.833449e-51 | -8.615850e-47 |
| Msa0282500 | Msa1381710 | 0.806920 | 6.506535e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381710 | MtrunA17_Chr5g0395701 | 94.737 | 608 | 29 | 3 | 3 | 608 | 1 | 607 | 0.0 | 1187 |
| Msa1381710 | MtrunA17_Chr4g0039581 | 67.128 | 578 | 180 | 7 | 32 | 608 | 1 | 569 | 0.0 | 788 |
| Msa1381710 | MtrunA17_Chr1g0190341 | 57.455 | 550 | 222 | 4 | 58 | 606 | 20 | 558 | 0.0 | 665 |
| Msa1381710 | MtrunA17_Chr1g0190371 | 57.455 | 550 | 222 | 4 | 58 | 606 | 20 | 558 | 0.0 | 665 |
| Msa1381710 | MtrunA17_Chr2g0310081 | 45.486 | 587 | 289 | 8 | 23 | 606 | 20 | 578 | 1.75e-175 | 510 |
| Msa1381710 | MtrunA17_Chr2g0309191 | 46.112 | 553 | 270 | 9 | 57 | 606 | 25 | 552 | 3.67e-170 | 495 |
| Msa1381710 | MtrunA17_Chr2g0309181 | 44.946 | 554 | 274 | 9 | 60 | 606 | 56 | 585 | 2.53e-163 | 479 |
| Msa1381710 | MtrunA17_Chr4g0074491 | 43.009 | 565 | 289 | 10 | 53 | 606 | 4 | 546 | 2.97e-154 | 454 |
| Msa1381710 | MtrunA17_Chr2g0309171 | 42.237 | 599 | 287 | 13 | 19 | 606 | 601 | 1151 | 2.59e-150 | 462 |
| Msa1381710 | MtrunA17_Chr2g0309171 | 43.438 | 541 | 270 | 10 | 73 | 602 | 14 | 529 | 6.46e-143 | 443 |
| Msa1381710 | MtrunA17_Chr2g0309131 | 41.084 | 572 | 245 | 9 | 42 | 607 | 1 | 486 | 1.51e-142 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381710 | AT5G43950.1 | 57.739 | 575 | 226 | 6 | 39 | 608 | 4 | 566 | 0.0 | 669 |
| Msa1381710 | AT1G04090.1 | 57.194 | 556 | 227 | 6 | 58 | 607 | 21 | 571 | 0.0 | 661 |
| Msa1381710 | AT3G04350.1 | 54.878 | 574 | 241 | 5 | 39 | 606 | 4 | 565 | 0.0 | 649 |
| Msa1381710 | AT5G18490.1 | 54.895 | 572 | 231 | 8 | 39 | 606 | 3 | 551 | 0.0 | 644 |
| Msa1381710 | AT3G04350.2 | 55.741 | 540 | 221 | 5 | 73 | 606 | 16 | 543 | 0.0 | 625 |
| Msa1381710 | AT2G44230.1 | 45.242 | 557 | 271 | 9 | 55 | 606 | 14 | 541 | 4.69e-162 | 474 |
| Msa1381710 | AT2G44260.1 | 44.118 | 578 | 284 | 12 | 40 | 606 | 3 | 552 | 1.90e-160 | 471 |
| Msa1381710 | AT2G44260.2 | 44.917 | 541 | 264 | 10 | 72 | 606 | 70 | 582 | 1.48e-155 | 459 |
| Msa1381710 | AT3G01870.1 | 42.707 | 569 | 272 | 12 | 55 | 606 | 52 | 583 | 2.19e-142 | 426 |
| Msa1381710 | AT3G01880.1 | 41.958 | 572 | 278 | 13 | 55 | 608 | 56 | 591 | 9.33e-138 | 414 |
Find 152 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTCACGAATTTCCATTT+TGG | 0.139701 | tig0020453:-4262 | Msa1381710:CDS |
| GAACAAATGATGGGGAATTT+TGG | 0.167237 | tig0020453:-3908 | Msa1381710:CDS |
| AACCTAGCTACAAGCCTTTA+TGG | 0.169684 | tig0020453:-4598 | Msa1381710:CDS |
| GGACCTTCTACTCTCAAATT+TGG | 0.175428 | tig0020453:-3744 | Msa1381710:CDS |
| CAACTAATTTCATCTAAATT+AGG | 0.185035 | tig0020453:+4347 | None:intergenic |
| AATGAACTTCTAAGCCTTAA+AGG | 0.224297 | tig0020453:+3282 | None:intergenic |
| CACAGCACAGTGGTGGTAAA+TGG | 0.225044 | tig0020453:-3614 | Msa1381710:CDS |
| TTGTACCGAAAGGGTGTTTC+TGG | 0.228534 | tig0020453:-3975 | Msa1381710:CDS |
| TTATTCATTCATCACAATAT+AGG | 0.252294 | tig0020453:-3058 | Msa1381710:three_prime_UTR |
| ACTTGCCTTCTTCTGTTGAT+TGG | 0.274633 | tig0020453:-4019 | Msa1381710:CDS |
| ATTTATCAAACACGGGGATT+TGG | 0.281262 | tig0020453:-3853 | Msa1381710:CDS |
| CTCAAACTCCAAACCCAAAA+TGG | 0.284220 | tig0020453:+4248 | None:intergenic |
| GCTCTATAAGCGCATGTATT+TGG | 0.287269 | tig0020453:+4081 | None:intergenic |
| TATTCATTCATCACAATATA+GGG | 0.289124 | tig0020453:-3057 | Msa1381710:three_prime_UTR |
| TTGATTCTGCTGCTTACTTT+TGG | 0.308078 | tig0020453:-4433 | Msa1381710:CDS |
| CCCTGTGACCGTGGTATGTT+AGG | 0.309045 | tig0020453:-4224 | Msa1381710:CDS |
| CCAAAGCTGGTAATTTGTTA+TGG | 0.310652 | tig0020453:+4522 | None:intergenic |
| ACGGTAAGGTTCACATTTAT+CGG | 0.312398 | tig0020453:+4307 | None:intergenic |
| CTAGTATGGTGCACTAATTC+AGG | 0.318499 | tig0020453:-4479 | Msa1381710:CDS |
| TTCCAAATGATAAAAGTAGA+AGG | 0.333241 | tig0020453:-3878 | Msa1381710:CDS |
| ACCTAGCTACAAGCCTTTAT+GGG | 0.339309 | tig0020453:-4597 | Msa1381710:CDS |
| TCACAAAGTTTGAGACTGTT+TGG | 0.349310 | tig0020453:-4715 | Msa1381710:CDS |
| CAAAACTTGGAATTGGTATC+AGG | 0.354205 | tig0020453:-3482 | Msa1381710:CDS |
| ATTCCAAATTTGAGAGTAGA+AGG | 0.364392 | tig0020453:+3741 | None:intergenic |
| CCATAACAAATTACCAGCTT+TGG | 0.368639 | tig0020453:-4522 | Msa1381710:CDS |
| TTAAGGCTTAGAAGTTCATT+TGG | 0.371438 | tig0020453:-3279 | Msa1381710:CDS |
| CCAAGAGCCTTGTAACCTTC+AGG | 0.373592 | tig0020453:+4398 | None:intergenic |
| TTACAAGGCTCTTGGCTACT+TGG | 0.375921 | tig0020453:-4390 | Msa1381710:CDS |
| CTCTTGATTATACACTAGTA+TGG | 0.389244 | tig0020453:-4493 | Msa1381710:CDS |
| CCCGGTGGAGGAACAAATGA+TGG | 0.402458 | tig0020453:-3918 | Msa1381710:CDS |
| TCTGAGGAACCAAGTGTTAC+GGG | 0.402750 | tig0020453:-5853 | Msa1381710:CDS |
| CCCATCATTTGTTCCTCCAC+CGG | 0.404728 | tig0020453:+3917 | None:intergenic |
| CATGCGCTTATAGAGCATTA+TGG | 0.407024 | tig0020453:-4074 | Msa1381710:CDS |
| GGATCGTCAAAACTTGGAAT+TGG | 0.408909 | tig0020453:-3489 | Msa1381710:CDS |
| CATCTAAATTAGGCTTCTTA+CGG | 0.416993 | tig0020453:+4357 | None:intergenic |
| AAACACCCTTTCGGTACAAA+AGG | 0.418519 | tig0020453:+3979 | None:intergenic |
| CGCCTCCAGAAACACCCTTT+CGG | 0.419938 | tig0020453:+3970 | None:intergenic |
| AAGGTTCACATTTATCGGTT+AGG | 0.425276 | tig0020453:+4312 | None:intergenic |
| AGCAAAGTTGGTGAACATAT+AGG | 0.438872 | tig0020453:-3702 | Msa1381710:CDS |
| TGCATTTGGAGCGAAGCATA+TGG | 0.440207 | tig0020453:+5790 | None:intergenic |
| TTGGTGAACATATAGGTGAT+TGG | 0.444018 | tig0020453:-3695 | Msa1381710:CDS |
| ATGATCGGATGCATTGGGTT+TGG | 0.445916 | tig0020453:+5752 | None:intergenic |
| ATTGTTGCAGCTGAGTATTT+AGG | 0.446537 | tig0020453:-3408 | Msa1381710:CDS |
| TACCGTACATTACTTGATGC+TGG | 0.447194 | tig0020453:-4290 | Msa1381710:CDS |
| CCAGATGGATTTCACATCCT+TGG | 0.449720 | tig0020453:-4632 | Msa1381710:CDS |
| TATGAATTAGAGTATATTGA+TGG | 0.450379 | tig0020453:-3582 | Msa1381710:CDS |
| CCCTAACATACCACGGTCAC+AGG | 0.451878 | tig0020453:+4223 | None:intergenic |
| TTTACTGCAGTGGTTGTTGT+TGG | 0.452580 | tig0020453:-4178 | Msa1381710:CDS |
| TATGGTGAGGAAGGTCCTAC+AGG | 0.453139 | tig0020453:-3225 | Msa1381710:CDS |
| AAATTCTTCAAACACACAAC+AGG | 0.455952 | tig0020453:+4137 | None:intergenic |
| ATACAAGGATCGTCAAAACT+TGG | 0.457651 | tig0020453:-3495 | Msa1381710:CDS |
| GCAAGTACAAAACCCCATAA+AGG | 0.458789 | tig0020453:+4584 | None:intergenic |
| GATCCTTGTATATAGGTTCC+AGG | 0.460143 | tig0020453:+3507 | None:intergenic |
| GTAACTTCACTGGAGAACTT+TGG | 0.460209 | tig0020453:-3650 | Msa1381710:CDS |
| TGGTGAACATATAGGTGATT+GGG | 0.464800 | tig0020453:-3694 | Msa1381710:CDS |
| TGTATATAGGTTCCAGGATG+AGG | 0.471629 | tig0020453:+3513 | None:intergenic |
| CCTTGAGGCCATTGAGGAAG+AGG | 0.473899 | tig0020453:+5690 | None:intergenic |
| ATCTGAGGAACCAAGTGTTA+CGG | 0.474973 | tig0020453:-5854 | Msa1381710:CDS |
| ACAGCACAGTGGTGGTAAAT+GGG | 0.478438 | tig0020453:-3613 | Msa1381710:CDS |
| GTTGCAGTATATGAGACAAT+GGG | 0.481252 | tig0020453:-3361 | Msa1381710:CDS |
| ACCGTGGTATGTTAGGGAAA+GGG | 0.483580 | tig0020453:-4217 | Msa1381710:CDS |
| GTTCATGTGAAACCAGCATT+TGG | 0.492138 | tig0020453:-3813 | Msa1381710:CDS |
| GAAGGCAAGTAAATTTCCTC+TGG | 0.494221 | tig0020453:+4032 | None:intergenic |
| TCAACACTCCTCTTCCTCAA+TGG | 0.495707 | tig0020453:-5698 | Msa1381710:CDS |
| GTGAAAGTTCCACCAAATGC+TGG | 0.501784 | tig0020453:+3801 | None:intergenic |
| CCATCATTTGTTCCTCCACC+GGG | 0.501856 | tig0020453:+3918 | None:intergenic |
| CCAAGGATGTGAAATCCATC+TGG | 0.503558 | tig0020453:+4632 | None:intergenic |
| GCTTCTGGAATTGTGAACCT+TGG | 0.503605 | tig0020453:-4758 | Msa1381710:CDS |
| TCAAGAGGGTTCTCCAAAGC+TGG | 0.506894 | tig0020453:+4509 | None:intergenic |
| AAGTAAGCAGCAGAATCAAC+CGG | 0.508782 | tig0020453:+4437 | None:intergenic |
| CACGGCATTGCTGATAGCGT+TGG | 0.508920 | tig0020453:+4110 | None:intergenic |
| CTCATATACTGCAACCATTG+AGG | 0.510301 | tig0020453:+3369 | None:intergenic |
| CCTGAAGGTTACAAGGCTCT+TGG | 0.512936 | tig0020453:-4398 | Msa1381710:CDS |
| TTAGGGAAAGGGGTTTCAGT+AGG | 0.513416 | tig0020453:-4206 | Msa1381710:CDS |
| ATGATGATGATCGGATGCAT+TGG | 0.513727 | tig0020453:+5746 | None:intergenic |
| TGATGATGATCGGATGCATT+GGG | 0.516859 | tig0020453:+5747 | None:intergenic |
| TTGTAACCTTCAGGAGGTTG+AGG | 0.516986 | tig0020453:+4407 | None:intergenic |
| TCAACCTCCTGAAGGTTACA+AGG | 0.518511 | tig0020453:-4405 | Msa1381710:CDS |
| CCGTGGTATGTTAGGGAAAG+GGG | 0.522778 | tig0020453:-4216 | Msa1381710:CDS |
| CATCCTGGAACCTATATACA+AGG | 0.523885 | tig0020453:-3510 | Msa1381710:CDS |
| GTTCCTCAGATTGATTAAAG+TGG | 0.527441 | tig0020453:+5866 | None:intergenic |
| CTTCGAATAAGTAACTTCAC+TGG | 0.528369 | tig0020453:-3660 | Msa1381710:CDS |
| AAGCTTCCTGTGGAACTGTA+TGG | 0.531076 | tig0020453:-3243 | Msa1381710:CDS |
| CCTCTTCCTCAATGGCCTCA+AGG | 0.531772 | tig0020453:-5690 | Msa1381710:intron |
| GTTATACCTTGAGGCCATTG+AGG | 0.537258 | tig0020453:+5684 | None:intergenic |
| CCTGTGACCGTGGTATGTTA+GGG | 0.540441 | tig0020453:-4223 | Msa1381710:CDS |
| TCCAAATGATAAAAGTAGAA+GGG | 0.543171 | tig0020453:-3877 | Msa1381710:CDS |
| TAGGGAAAGGGGTTTCAGTA+GGG | 0.545626 | tig0020453:-4205 | Msa1381710:CDS |
| TGGCTACCTCAACCTCCTGA+AGG | 0.547085 | tig0020453:-4413 | Msa1381710:CDS |
| AATCCATCTGGTACTCCCAC+TGG | 0.548701 | tig0020453:+4644 | None:intergenic |
| GACCGTGGTATGTTAGGGAA+AGG | 0.549630 | tig0020453:-4218 | Msa1381710:CDS |
| AACACCCTTTCGGTACAAAA+GGG | 0.549967 | tig0020453:+3980 | None:intergenic |
| ACACAGTGACAAAGAGAGAA+AGG | 0.550607 | tig0020453:-5979 | Msa1381710:five_prime_UTR |
| CATGCAAGTTACCCTCATCC+TGG | 0.555899 | tig0020453:-3525 | Msa1381710:CDS |
| TCCTCACCATACAGTTCCAC+AGG | 0.556027 | tig0020453:+3237 | None:intergenic |
| TCTGGATGAAAGAAAACAGT+AGG | 0.556534 | tig0020453:+4050 | None:intergenic |
| AGAGTAGAAGGTCCATTGAA+AGG | 0.557117 | tig0020453:+3753 | None:intergenic |
| ATGGTTGCTAATGTTATATG+AGG | 0.557837 | tig0020453:+4541 | None:intergenic |
| AAGAAAGAAAATCGCCATGC+CGG | 0.560298 | tig0020453:-4456 | Msa1381710:CDS |
| TACCGAAAGGGTGTTTCTGG+AGG | 0.563977 | tig0020453:-3972 | Msa1381710:CDS |
| TTCCAGCATCAAGTAATGTA+CGG | 0.564801 | tig0020453:+4288 | None:intergenic |
| CCCCATAAAGGCTTGTAGCT+AGG | 0.566011 | tig0020453:+4596 | None:intergenic |
| CATGTGAAACCAGCATTTGG+TGG | 0.567022 | tig0020453:-3810 | Msa1381710:CDS |
| GCATCAAGTAATGTACGGTA+AGG | 0.567450 | tig0020453:+4293 | None:intergenic |
| TCGGATGCATTGGGTTTGGA+AGG | 0.573549 | tig0020453:+5756 | None:intergenic |
| GGTTGCAGTATATGAGACAA+TGG | 0.577104 | tig0020453:-3362 | Msa1381710:CDS |
| CCGGTGGAGGAACAAATGAT+GGG | 0.577469 | tig0020453:-3917 | Msa1381710:CDS |
| AGTAAAGAACCCGTAACACT+TGG | 0.579715 | tig0020453:+5844 | None:intergenic |
| GAAGGGAATTTATCAAACAC+GGG | 0.582141 | tig0020453:-3860 | Msa1381710:CDS |
| CCTAGCTACAAGCCTTTATG+GGG | 0.589573 | tig0020453:-4596 | Msa1381710:CDS |
| AAACCAGTGGGAGTACCAGA+TGG | 0.591413 | tig0020453:-4647 | Msa1381710:CDS |
| GTATATAGGTTCCAGGATGA+GGG | 0.595393 | tig0020453:+3514 | None:intergenic |
| AGCGAAGCATATGGAAGAGA+AGG | 0.597525 | tig0020453:+5799 | None:intergenic |
| AGAAGGGAATTTATCAAACA+CGG | 0.598533 | tig0020453:-3861 | Msa1381710:CDS |
| ATTATTTGACTAAATTCGTG+TGG | 0.598936 | tig0020453:+3140 | None:intergenic |
| AAGAAGAAGATGATGATGAT+CGG | 0.599526 | tig0020453:+5737 | None:intergenic |
| CTTTCACAGACATTGTAATG+TGG | 0.602196 | tig0020453:-3785 | Msa1381710:CDS |
| CATACTAGTGTATAATCAAG+AGG | 0.607012 | tig0020453:+4494 | None:intergenic |
| ACTGGATTGGAGATGAAAGA+TGG | 0.607537 | tig0020453:-3185 | Msa1381710:CDS |
| GGAGGCGAGACTATCGATGA+AGG | 0.612794 | tig0020453:-3954 | Msa1381710:CDS |
| TTTGTTTAGAAAGCTTCCTG+TGG | 0.616442 | tig0020453:-3253 | Msa1381710:CDS |
| CAACGCTATCAGCAATGCCG+TGG | 0.618471 | tig0020453:-4109 | Msa1381710:CDS |
| AGCAGCAGAATCAACCGGCA+TGG | 0.620057 | tig0020453:+4442 | None:intergenic |
| GCATGTATTTGGTCGATCCA+CGG | 0.622544 | tig0020453:+4092 | None:intergenic |
| CATATAATTACAAACACTTG+TGG | 0.623185 | tig0020453:+3103 | None:intergenic |
| GTGGAACTGTATGGTGAGGA+AGG | 0.624680 | tig0020453:-3234 | Msa1381710:CDS |
| CAACCACTTTAATCAATCTG+AGG | 0.628429 | tig0020453:-5869 | Msa1381710:CDS |
| CCTAACATACCACGGTCACA+GGG | 0.635491 | tig0020453:+4224 | None:intergenic |
| GGCGAGACTATCGATGAAGG+TGG | 0.637509 | tig0020453:-3951 | Msa1381710:CDS |
| TGCATACTTCAATTTCACCA+AGG | 0.639336 | tig0020453:+4741 | None:intergenic |
| CCCCTTTCCCTAACATACCA+CGG | 0.642679 | tig0020453:+4216 | None:intergenic |
| ATGGTGAGGAAGGTCCTACA+GGG | 0.644246 | tig0020453:-3224 | Msa1381710:CDS |
| AGCATATGGAAGAGAAGGTG+CGG | 0.644580 | tig0020453:+5804 | None:intergenic |
| TAGGTTGACAATAGTGACCA+AGG | 0.646845 | tig0020453:+4615 | None:intergenic |
| GTTGCATTCTATAAACCAGT+GGG | 0.653192 | tig0020453:-4659 | Msa1381710:CDS |
| CTGGATGAAAGAAAACAGTA+GGG | 0.660966 | tig0020453:+4051 | None:intergenic |
| CGGTGGAGGAACAAATGATG+GGG | 0.661232 | tig0020453:-3916 | Msa1381710:CDS |
| AGTTTGAGACCCTGTGACCG+TGG | 0.661594 | tig0020453:-4233 | Msa1381710:CDS |
| TTGGAACAGCAATGTGATGG+TGG | 0.664789 | tig0020453:-4696 | Msa1381710:CDS |
| TGTTGCATTCTATAAACCAG+TGG | 0.664919 | tig0020453:-4660 | Msa1381710:CDS |
| AGAGCCTTGTAACCTTCAGG+AGG | 0.667379 | tig0020453:+4401 | None:intergenic |
| ATGTTGTGAAAGAACCTCAA+TGG | 0.675895 | tig0020453:-3383 | Msa1381710:CDS |
| ATACTAGTGTATAATCAAGA+GGG | 0.679181 | tig0020453:+4495 | None:intergenic |
| TCCTGTGGAACTGTATGGTG+AGG | 0.682195 | tig0020453:-3238 | Msa1381710:CDS |
| TATTACTCACAGCACAGTGG+TGG | 0.685056 | tig0020453:-3621 | Msa1381710:CDS |
| TAGACGTAGTAATTTGCGTG+TGG | 0.689667 | tig0020453:-3451 | Msa1381710:CDS |
| AGTGGTTGTTGTTGGAACAA+CGG | 0.703604 | tig0020453:-4170 | Msa1381710:CDS |
| AAGGGAATTTATCAAACACG+GGG | 0.703962 | tig0020453:-3859 | Msa1381710:CDS |
| ATATGGAAGAGAAGGTGCGG+AGG | 0.709050 | tig0020453:+5807 | None:intergenic |
| TGTTTGGAACAGCAATGTGA+TGG | 0.709746 | tig0020453:-4699 | Msa1381710:CDS |
| TTGCAGTATATGAGACAATG+GGG | 0.725300 | tig0020453:-3360 | Msa1381710:CDS |
| ATATATTACTCACAGCACAG+TGG | 0.799299 | tig0020453:-3624 | Msa1381710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATAATGAATAAAAAAA+TGG | + | tig0020453:3380-3399 | None:intergenic | 10.0% |
| !! | AATTTACTTGACTATTATTT+AGG | - | tig0020453:3961-3980 | Msa1381710:CDS | 15.0% |
| !! | TCTTCTAATCAAATTAAATA+TGG | - | tig0020453:4045-4064 | Msa1381710:CDS | 15.0% |
| !!! | TTTGAATCATAAACAATTTT+AGG | + | tig0020453:5695-5714 | None:intergenic | 15.0% |
| !! | ATTTGAGTGGTAAAAAAAAA+AGG | + | tig0020453:3528-3547 | None:intergenic | 20.0% |
| !! | AGTAACAAATTTCTTCTAAT+CGG | - | tig0020453:3852-3871 | Msa1381710:CDS | 20.0% |
| !! | AGTCAAGTAAATTATAAGAA+AGG | + | tig0020453:3954-3973 | None:intergenic | 20.0% |
| !!! | ATTTAATTTGATTAGAAGAC+AGG | + | tig0020453:4044-4063 | None:intergenic | 20.0% |
| !! | GTTAATTTACCAATCAATAA+AGG | - | tig0020453:4067-4086 | Msa1381710:CDS | 20.0% |
| !! | ACAATAACTTGATTAGAAAA+GGG | + | tig0020453:4206-4225 | None:intergenic | 20.0% |
| !! | AACAATAACTTGATTAGAAA+AGG | + | tig0020453:4207-4226 | None:intergenic | 20.0% |
| !!! | GTAATTATTTTACTGATTAC+AGG | - | tig0020453:4237-4256 | Msa1381710:CDS | 20.0% |
| !! | CAACTAATTTCATCTAAATT+AGG | + | tig0020453:4684-4703 | None:intergenic | 20.0% |
| !! | TATGAATTAGAGTATATTGA+TGG | - | tig0020453:5446-5465 | Msa1381710:intron | 20.0% |
| !! | TTATTCATTCATCACAATAT+AGG | - | tig0020453:5970-5989 | Msa1381710:five_prime_UTR | 20.0% |
| !! | TATTCATTCATCACAATATA+GGG | - | tig0020453:5971-5990 | Msa1381710:five_prime_UTR | 20.0% |
| !!! | AAGTATCGTTTTCAATTGAA+GGG | + | tig0020453:3082-3101 | None:intergenic | 25.0% |
| ! | TCTTCAAAATCAAGTTAACA+TGG | + | tig0020453:3609-3628 | None:intergenic | 25.0% |
| ! | GTAACAAATTTCTTCTAATC+GGG | - | tig0020453:3853-3872 | Msa1381710:CDS | 25.0% |
| ! | TTGACTATTATTTAGGTCAT+TGG | - | tig0020453:3968-3987 | Msa1381710:CDS | 25.0% |
| ! | AAGATGAAACCTTTATTGAT+TGG | + | tig0020453:4079-4098 | None:intergenic | 25.0% |
| ! | AGTTAAATTGCTTAGAAGAA+AGG | + | tig0020453:4119-4138 | None:intergenic | 25.0% |
| !! | TCTTCTAAGCAATTTAACTT+TGG | - | tig0020453:4120-4139 | Msa1381710:CDS | 25.0% |
| !! | TTTAACTTTGGTTAAGTCAT+TGG | - | tig0020453:4132-4151 | Msa1381710:CDS | 25.0% |
| ! | GATTGATATTTCTTCTTATC+TGG | - | tig0020453:4164-4183 | Msa1381710:CDS | 25.0% |
| ! | CAAGTTATTGTTTATATGTC+TGG | - | tig0020453:4215-4234 | Msa1381710:CDS | 25.0% |
| ! | ATACTAGTGTATAATCAAGA+GGG | + | tig0020453:4536-4555 | None:intergenic | 25.0% |
| !! | TAATTCACGAATTTCCATTT+TGG | - | tig0020453:4766-4785 | Msa1381710:CDS | 25.0% |
| !! | AATTCACGAATTTCCATTTT+GGG | - | tig0020453:4767-4786 | Msa1381710:CDS | 25.0% |
| ! | TTCCAAATGATAAAAGTAGA+AGG | - | tig0020453:5150-5169 | Msa1381710:intron | 25.0% |
| ! | TCCAAATGATAAAAGTAGAA+GGG | - | tig0020453:5151-5170 | Msa1381710:intron | 25.0% |
| ! | ATTGTATACGCATCAAAAAA+TGG | - | tig0020453:5479-5498 | Msa1381710:intron | 25.0% |
| !! | TTTTAAACTCTCTTCCTTTA+AGG | - | tig0020453:5732-5751 | Msa1381710:CDS | 25.0% |
| !!! | ATCCAGTTATTTTTCTCTTT+TGG | + | tig0020453:5830-5849 | None:intergenic | 25.0% |
| ! | AAAGAGAAAAATAACTGGAT+TGG | - | tig0020453:5830-5849 | Msa1381710:CDS | 25.0% |
| ! | ATTATTTGACTAAATTCGTG+TGG | + | tig0020453:5891-5910 | None:intergenic | 25.0% |
| ! | CATATAATTACAAACACTTG+TGG | + | tig0020453:5928-5947 | None:intergenic | 25.0% |
| !!! | GAAGTATCGTTTTCAATTGA+AGG | + | tig0020453:3083-3102 | None:intergenic | 30.0% |
| ! | AAGAAGAAGATGATGATGAT+CGG | + | tig0020453:3294-3313 | None:intergenic | 30.0% |
| GTTGTTATAGTTATACCTTG+AGG | + | tig0020453:3356-3375 | None:intergenic | 30.0% | |
| CTAGAACATTAACATAGCAA+AGG | + | tig0020453:3459-3478 | None:intergenic | 30.0% | |
| TCGATAAGATAGTAATCATG+AGG | + | tig0020453:3578-3597 | None:intergenic | 30.0% | |
| AGAAACCAATCAACTTAACT+AGG | - | tig0020453:3626-3645 | Msa1381710:CDS | 30.0% | |
| !! | GTAATCCTAGTTAAGTTGAT+TGG | + | tig0020453:3634-3653 | None:intergenic | 30.0% |
| TTCACTTGATTACTTTACTG+TGG | - | tig0020453:3672-3691 | Msa1381710:CDS | 30.0% | |
| TATGTTTGTTTGATGTGAAC+TGG | - | tig0020453:3704-3723 | Msa1381710:CDS | 30.0% | |
| ATGTTTGTTTGATGTGAACT+GGG | - | tig0020453:3705-3724 | Msa1381710:CDS | 30.0% | |
| ! | TGATTTAACCATAGTCTTGA+GGG | + | tig0020453:3789-3808 | None:intergenic | 30.0% |
| ! | TTGATTTAACCATAGTCTTG+AGG | + | tig0020453:3790-3809 | None:intergenic | 30.0% |
| TAATCGGGTTAACTATGTTT+AGG | - | tig0020453:3868-3887 | Msa1381710:CDS | 30.0% | |
| GTTAACTATGTTTAGGTCAT+CGG | - | tig0020453:3875-3894 | Msa1381710:CDS | 30.0% | |
| ! | TTTAGGTCATTGGTTAACAA+AGG | - | tig0020453:3978-3997 | Msa1381710:CDS | 30.0% |
| ACTATAGTTCATCAGATTAG+AGG | + | tig0020453:4014-4033 | None:intergenic | 30.0% | |
| !! | TATTTTACTGATTACAGGAC+AGG | - | tig0020453:4242-4261 | Msa1381710:CDS | 30.0% |
| ATGGTTGCTAATGTTATATG+AGG | + | tig0020453:4490-4509 | None:intergenic | 30.0% | |
| CATACTAGTGTATAATCAAG+AGG | + | tig0020453:4537-4556 | None:intergenic | 30.0% | |
| CTCTTGATTATACACTAGTA+TGG | - | tig0020453:4535-4554 | Msa1381710:CDS | 30.0% | |
| CATCTAAATTAGGCTTCTTA+CGG | + | tig0020453:4674-4693 | None:intergenic | 30.0% | |
| AAATTCTTCAAACACACAAC+AGG | + | tig0020453:4894-4913 | None:intergenic | 30.0% | |
| AAAAACCAATCAACAGAAGA+AGG | + | tig0020453:5017-5036 | None:intergenic | 30.0% | |
| !!! | GTTGATTGGTTTTTCAACAA+TGG | - | tig0020453:5023-5042 | Msa1381710:intron | 30.0% |
| !! | TCCCTTCTACTTTTATCATT+TGG | + | tig0020453:5155-5174 | None:intergenic | 30.0% |
| AGAAGGGAATTTATCAAACA+CGG | - | tig0020453:5167-5186 | Msa1381710:intron | 30.0% | |
| !!! | TGGATTTTTTGTCCTTTCAA+TGG | - | tig0020453:5263-5282 | Msa1381710:intron | 30.0% |
| ATTCCAAATTTGAGAGTAGA+AGG | + | tig0020453:5290-5309 | None:intergenic | 30.0% | |
| ! | TTTTGACGATCCTTGTATAT+AGG | + | tig0020453:5531-5550 | None:intergenic | 30.0% |
| AATGAACTTCTAAGCCTTAA+AGG | + | tig0020453:5749-5768 | None:intergenic | 30.0% | |
| TTAAGGCTTAGAAGTTCATT+TGG | - | tig0020453:5749-5768 | Msa1381710:CDS | 30.0% | |
| ! | TCGTTTTCAATTGAAGGGAA+CGG | + | tig0020453:3077-3096 | None:intergenic | 35.0% |
| CAACCACTTTAATCAATCTG+AGG | - | tig0020453:3159-3178 | Msa1381710:three_prime_UTR | 35.0% | |
| GTTCCTCAGATTGATTAAAG+TGG | + | tig0020453:3165-3184 | None:intergenic | 35.0% | |
| AGGAAAAAAGCAGTTGCATT+TGG | + | tig0020453:3255-3274 | None:intergenic | 35.0% | |
| !! | GTGTTGAGAGAAAAAGTGTT+GGG | + | tig0020453:3317-3336 | None:intergenic | 35.0% |
| ! | AGTGTTGAGAGAAAAAGTGT+TGG | + | tig0020453:3318-3337 | None:intergenic | 35.0% |
| GCAGAAAAGAGAAATTTGAG+TGG | + | tig0020453:3541-3560 | None:intergenic | 35.0% | |
| TGCATACTTCAATTTCACCA+AGG | + | tig0020453:4290-4309 | None:intergenic | 35.0% | |
| ! | TCACAAAGTTTGAGACTGTT+TGG | - | tig0020453:4313-4332 | Msa1381710:CDS | 35.0% |
| ! | TAGAATGCAACAGCTTTTCT+TGG | + | tig0020453:4360-4379 | None:intergenic | 35.0% |
| TGTTGCATTCTATAAACCAG+TGG | - | tig0020453:4368-4387 | Msa1381710:CDS | 35.0% | |
| GTTGCATTCTATAAACCAGT+GGG | - | tig0020453:4369-4388 | Msa1381710:CDS | 35.0% | |
| !! | CCAAAGCTGGTAATTTGTTA+TGG | + | tig0020453:4509-4528 | None:intergenic | 35.0% |
| CCATAACAAATTACCAGCTT+TGG | - | tig0020453:4506-4525 | Msa1381710:CDS | 35.0% | |
| !! | TTGATTCTGCTGCTTACTTT+TGG | - | tig0020453:4595-4614 | Msa1381710:CDS | 35.0% |
| ! | AAGGTTCACATTTATCGGTT+AGG | + | tig0020453:4719-4738 | None:intergenic | 35.0% |
| ACGGTAAGGTTCACATTTAT+CGG | + | tig0020453:4724-4743 | None:intergenic | 35.0% | |
| TTCCAGCATCAAGTAATGTA+CGG | + | tig0020453:4743-4762 | None:intergenic | 35.0% | |
| !!! | ACGAATTTCCATTTTGGGTT+TGG | - | tig0020453:4772-4791 | Msa1381710:CDS | 35.0% |
| CTGGATGAAAGAAAACAGTA+GGG | + | tig0020453:4980-4999 | None:intergenic | 35.0% | |
| TCTGGATGAAAGAAAACAGT+AGG | + | tig0020453:4981-5000 | None:intergenic | 35.0% | |
| ! | TACTGTTTTCTTTCATCCAG+AGG | - | tig0020453:4980-4999 | Msa1381710:intron | 35.0% |
| !! | GAACAAATGATGGGGAATTT+TGG | - | tig0020453:5120-5139 | Msa1381710:intron | 35.0% |
| GAAGGGAATTTATCAAACAC+GGG | - | tig0020453:5168-5187 | Msa1381710:intron | 35.0% | |
| AAGGGAATTTATCAAACACG+GGG | - | tig0020453:5169-5188 | Msa1381710:intron | 35.0% | |
| ATTTATCAAACACGGGGATT+TGG | - | tig0020453:5175-5194 | Msa1381710:intron | 35.0% | |
| CTTTCACAGACATTGTAATG+TGG | - | tig0020453:5243-5262 | Msa1381710:intron | 35.0% | |
| ! | AGCATGTCTTTTAGCAAAGT+TGG | - | tig0020453:5314-5333 | Msa1381710:intron | 35.0% |
| !! | AGCAAAGTTGGTGAACATAT+AGG | - | tig0020453:5326-5345 | Msa1381710:intron | 35.0% |
| TTGGTGAACATATAGGTGAT+TGG | - | tig0020453:5333-5352 | Msa1381710:intron | 35.0% | |
| TGGTGAACATATAGGTGATT+GGG | - | tig0020453:5334-5353 | Msa1381710:intron | 35.0% | |
| CTTCGAATAAGTAACTTCAC+TGG | - | tig0020453:5368-5387 | Msa1381710:intron | 35.0% | |
| ATATATTACTCACAGCACAG+TGG | - | tig0020453:5404-5423 | Msa1381710:intron | 35.0% | |
| ATACAAGGATCGTCAAAACT+TGG | - | tig0020453:5533-5552 | Msa1381710:intron | 35.0% | |
| CAAAACTTGGAATTGGTATC+AGG | - | tig0020453:5546-5565 | Msa1381710:intron | 35.0% | |
| ATTGTTGCAGCTGAGTATTT+AGG | - | tig0020453:5620-5639 | Msa1381710:intron | 35.0% | |
| ATGTTGTGAAAGAACCTCAA+TGG | - | tig0020453:5645-5664 | Msa1381710:intron | 35.0% | |
| GTTGCAGTATATGAGACAAT+GGG | - | tig0020453:5667-5686 | Msa1381710:intron | 35.0% | |
| TTGCAGTATATGAGACAATG+GGG | - | tig0020453:5668-5687 | Msa1381710:intron | 35.0% | |
| TTTGTTTAGAAAGCTTCCTG+TGG | - | tig0020453:5775-5794 | Msa1381710:CDS | 35.0% | |
| GGCCAAAAGAGAAAAATAAC+TGG | - | tig0020453:5825-5844 | Msa1381710:CDS | 35.0% | |
| ACACAGTGACAAAGAGAGAA+AGG | - | tig0020453:3049-3068 | Msa1381710:three_prime_UTR | 40.0% | |
| ! | CGTTTTCAATTGAAGGGAAC+GGG | + | tig0020453:3076-3095 | None:intergenic | 40.0% |
| ATCTGAGGAACCAAGTGTTA+CGG | - | tig0020453:3174-3193 | Msa1381710:exon | 40.0% | |
| AGTAAAGAACCCGTAACACT+TGG | + | tig0020453:3187-3206 | None:intergenic | 40.0% | |
| ! | TGATGATGATCGGATGCATT+GGG | + | tig0020453:3284-3303 | None:intergenic | 40.0% |
| ! | ATGATGATGATCGGATGCAT+TGG | + | tig0020453:3285-3304 | None:intergenic | 40.0% |
| ! | TGTTTGGAACAGCAATGTGA+TGG | - | tig0020453:4329-4348 | Msa1381710:CDS | 40.0% |
| ! | TAGGTTGACAATAGTGACCA+AGG | + | tig0020453:4416-4435 | None:intergenic | 40.0% |
| AACCTAGCTACAAGCCTTTA+TGG | - | tig0020453:4430-4449 | Msa1381710:CDS | 40.0% | |
| ACCTAGCTACAAGCCTTTAT+GGG | - | tig0020453:4431-4450 | Msa1381710:CDS | 40.0% | |
| GCAAGTACAAAACCCCATAA+AGG | + | tig0020453:4447-4466 | None:intergenic | 40.0% | |
| CTAGTATGGTGCACTAATTC+AGG | - | tig0020453:4549-4568 | Msa1381710:CDS | 40.0% | |
| AAGAAAGAAAATCGCCATGC+CGG | - | tig0020453:4572-4591 | Msa1381710:CDS | 40.0% | |
| AAGTAAGCAGCAGAATCAAC+CGG | + | tig0020453:4594-4613 | None:intergenic | 40.0% | |
| GCATCAAGTAATGTACGGTA+AGG | + | tig0020453:4738-4757 | None:intergenic | 40.0% | |
| TACCGTACATTACTTGATGC+TGG | - | tig0020453:4738-4757 | Msa1381710:CDS | 40.0% | |
| CTCAAACTCCAAACCCAAAA+TGG | + | tig0020453:4783-4802 | None:intergenic | 40.0% | |
| TTTACTGCAGTGGTTGTTGT+TGG | - | tig0020453:4850-4869 | Msa1381710:intron | 40.0% | |
| ! | AGTGGTTGTTGTTGGAACAA+CGG | - | tig0020453:4858-4877 | Msa1381710:intron | 40.0% |
| GCTCTATAAGCGCATGTATT+TGG | + | tig0020453:4950-4969 | None:intergenic | 40.0% | |
| ! | CATGCGCTTATAGAGCATTA+TGG | - | tig0020453:4954-4973 | Msa1381710:intron | 40.0% |
| GAAGGCAAGTAAATTTCCTC+TGG | + | tig0020453:4999-5018 | None:intergenic | 40.0% | |
| ACTTGCCTTCTTCTGTTGAT+TGG | - | tig0020453:5009-5028 | Msa1381710:intron | 40.0% | |
| AACACCCTTTCGGTACAAAA+GGG | + | tig0020453:5051-5070 | None:intergenic | 40.0% | |
| AAACACCCTTTCGGTACAAA+AGG | + | tig0020453:5052-5071 | None:intergenic | 40.0% | |
| ! | GAAGGTGGATCAAATTTTCC+CGG | - | tig0020453:5092-5111 | Msa1381710:intron | 40.0% |
| GTTCATGTGAAACCAGCATT+TGG | - | tig0020453:5215-5234 | Msa1381710:intron | 40.0% | |
| AGAGTAGAAGGTCCATTGAA+AGG | + | tig0020453:5278-5297 | None:intergenic | 40.0% | |
| GGACCTTCTACTCTCAAATT+TGG | - | tig0020453:5284-5303 | Msa1381710:intron | 40.0% | |
| GTAACTTCACTGGAGAACTT+TGG | - | tig0020453:5378-5397 | Msa1381710:intron | 40.0% | |
| GTATATAGGTTCCAGGATGA+GGG | + | tig0020453:5517-5536 | None:intergenic | 40.0% | |
| TGTATATAGGTTCCAGGATG+AGG | + | tig0020453:5518-5537 | None:intergenic | 40.0% | |
| CATCCTGGAACCTATATACA+AGG | - | tig0020453:5518-5537 | Msa1381710:intron | 40.0% | |
| GATCCTTGTATATAGGTTCC+AGG | + | tig0020453:5524-5543 | None:intergenic | 40.0% | |
| GGATCGTCAAAACTTGGAAT+TGG | - | tig0020453:5539-5558 | Msa1381710:intron | 40.0% | |
| ! | TAGACGTAGTAATTTGCGTG+TGG | - | tig0020453:5577-5596 | Msa1381710:intron | 40.0% |
| CTCATATACTGCAACCATTG+AGG | + | tig0020453:5662-5681 | None:intergenic | 40.0% | |
| GGTTGCAGTATATGAGACAA+TGG | - | tig0020453:5666-5685 | Msa1381710:intron | 40.0% | |
| ! | TTTTTCTCTTTTGGCCCTGT+AGG | + | tig0020453:5821-5840 | None:intergenic | 40.0% |
| ! | ACTGGATTGGAGATGAAAGA+TGG | - | tig0020453:5843-5862 | Msa1381710:CDS | 40.0% |
| TCTGAGGAACCAAGTGTTAC+GGG | - | tig0020453:3175-3194 | Msa1381710:exon | 45.0% | |
| AGCATATGGAAGAGAAGGTG+CGG | + | tig0020453:3227-3246 | None:intergenic | 45.0% | |
| AGCGAAGCATATGGAAGAGA+AGG | + | tig0020453:3232-3251 | None:intergenic | 45.0% | |
| ! | TGCATTTGGAGCGAAGCATA+TGG | + | tig0020453:3241-3260 | None:intergenic | 45.0% |
| ATGATCGGATGCATTGGGTT+TGG | + | tig0020453:3279-3298 | None:intergenic | 45.0% | |
| TCAACACTCCTCTTCCTCAA+TGG | - | tig0020453:3330-3349 | Msa1381710:CDS | 45.0% | |
| GTTATACCTTGAGGCCATTG+AGG | + | tig0020453:3347-3366 | None:intergenic | 45.0% | |
| AATGTTGTGTCTGACACGCA+TGG | + | tig0020453:3418-3437 | None:intergenic | 45.0% | |
| GTCTCTACAGTTGCATGCAA+AGG | + | tig0020453:3734-3753 | None:intergenic | 45.0% | |
| CTGTAGAGACTAATCGCTTG+AGG | - | tig0020453:3744-3763 | Msa1381710:CDS | 45.0% | |
| AGACTAATCGCTTGAGGTAG+TGG | - | tig0020453:3750-3769 | Msa1381710:CDS | 45.0% | |
| GACTAATCGCTTGAGGTAGT+GGG | - | tig0020453:3751-3770 | Msa1381710:CDS | 45.0% | |
| AAAGCTCTCCCTCAAGACTA+TGG | - | tig0020453:3778-3797 | Msa1381710:CDS | 45.0% | |
| ! | ACAGGACAGGATTTTGCTTC+TGG | - | tig0020453:4255-4274 | Msa1381710:CDS | 45.0% |
| !! | GCTTCTGGAATTGTGAACCT+TGG | - | tig0020453:4270-4289 | Msa1381710:CDS | 45.0% |
| TTGGAACAGCAATGTGATGG+TGG | - | tig0020453:4332-4351 | Msa1381710:CDS | 45.0% | |
| CCAAGGATGTGAAATCCATC+TGG | + | tig0020453:4399-4418 | None:intergenic | 45.0% | |
| ! | CCAGATGGATTTCACATCCT+TGG | - | tig0020453:4396-4415 | Msa1381710:CDS | 45.0% |
| CCTAGCTACAAGCCTTTATG+GGG | - | tig0020453:4432-4451 | Msa1381710:CDS | 45.0% | |
| TTGTAACCTTCAGGAGGTTG+AGG | + | tig0020453:4624-4643 | None:intergenic | 45.0% | |
| TCAACCTCCTGAAGGTTACA+AGG | - | tig0020453:4623-4642 | Msa1381710:CDS | 45.0% | |
| TTACAAGGCTCTTGGCTACT+TGG | - | tig0020453:4638-4657 | Msa1381710:CDS | 45.0% | |
| ACCGTGGTATGTTAGGGAAA+GGG | - | tig0020453:4811-4830 | Msa1381710:intron | 45.0% | |
| TTAGGGAAAGGGGTTTCAGT+AGG | - | tig0020453:4822-4841 | Msa1381710:intron | 45.0% | |
| TAGGGAAAGGGGTTTCAGTA+GGG | - | tig0020453:4823-4842 | Msa1381710:intron | 45.0% | |
| ! | GTAGGGACTTTTTACTGCAG+TGG | - | tig0020453:4840-4859 | Msa1381710:intron | 45.0% |
| GCATGTATTTGGTCGATCCA+CGG | + | tig0020453:4939-4958 | None:intergenic | 45.0% | |
| !! | TTGTACCGAAAGGGTGTTTC+TGG | - | tig0020453:5053-5072 | Msa1381710:intron | 45.0% |
| CATGTGAAACCAGCATTTGG+TGG | - | tig0020453:5218-5237 | Msa1381710:intron | 45.0% | |
| GTGAAAGTTCCACCAAATGC+TGG | + | tig0020453:5230-5249 | None:intergenic | 45.0% | |
| TATTACTCACAGCACAGTGG+TGG | - | tig0020453:5407-5426 | Msa1381710:intron | 45.0% | |
| ACAGCACAGTGGTGGTAAAT+GGG | - | tig0020453:5415-5434 | Msa1381710:intron | 45.0% | |
| AAGCTTCCTGTGGAACTGTA+TGG | - | tig0020453:5785-5804 | Msa1381710:CDS | 45.0% | |
| ! | ATATGGAAGAGAAGGTGCGG+AGG | + | tig0020453:3224-3243 | None:intergenic | 50.0% |
| TCGGATGCATTGGGTTTGGA+AGG | + | tig0020453:3275-3294 | None:intergenic | 50.0% | |
| !! | TAATCGCTTGAGGTAGTGGG+TGG | - | tig0020453:3754-3773 | Msa1381710:CDS | 50.0% |
| !! | AAACCAGTGGGAGTACCAGA+TGG | - | tig0020453:4381-4400 | Msa1381710:CDS | 50.0% |
| AATCCATCTGGTACTCCCAC+TGG | + | tig0020453:4387-4406 | None:intergenic | 50.0% | |
| CCCCATAAAGGCTTGTAGCT+AGG | + | tig0020453:4435-4454 | None:intergenic | 50.0% | |
| TCAAGAGGGTTCTCCAAAGC+TGG | + | tig0020453:4522-4541 | None:intergenic | 50.0% | |
| ! | AGAGCCTTGTAACCTTCAGG+AGG | + | tig0020453:4630-4649 | None:intergenic | 50.0% |
| ! | CCAAGAGCCTTGTAACCTTC+AGG | + | tig0020453:4633-4652 | None:intergenic | 50.0% |
| CCTGAAGGTTACAAGGCTCT+TGG | - | tig0020453:4630-4649 | Msa1381710:CDS | 50.0% | |
| CCTAACATACCACGGTCACA+GGG | + | tig0020453:4807-4826 | None:intergenic | 50.0% | |
| CCTGTGACCGTGGTATGTTA+GGG | - | tig0020453:4805-4824 | Msa1381710:intron | 50.0% | |
| GACCGTGGTATGTTAGGGAA+AGG | - | tig0020453:4810-4829 | Msa1381710:intron | 50.0% | |
| CCCCTTTCCCTAACATACCA+CGG | + | tig0020453:4815-4834 | None:intergenic | 50.0% | |
| CCGTGGTATGTTAGGGAAAG+GGG | - | tig0020453:4812-4831 | Msa1381710:intron | 50.0% | |
| ! | TGGAGCCCTTTTGTACCGAA+AGG | - | tig0020453:5043-5062 | Msa1381710:intron | 50.0% |
| ! | GGAGCCCTTTTGTACCGAAA+GGG | - | tig0020453:5044-5063 | Msa1381710:intron | 50.0% |
| !! | TACCGAAAGGGTGTTTCTGG+AGG | - | tig0020453:5056-5075 | Msa1381710:intron | 50.0% |
| ! | GGTGGATCAAATTTTCCCGG+TGG | - | tig0020453:5095-5114 | Msa1381710:intron | 50.0% |
| ! | GGATCAAATTTTCCCGGTGG+AGG | - | tig0020453:5098-5117 | Msa1381710:intron | 50.0% |
| CCATCATTTGTTCCTCCACC+GGG | + | tig0020453:5113-5132 | None:intergenic | 50.0% | |
| CCCATCATTTGTTCCTCCAC+CGG | + | tig0020453:5114-5133 | None:intergenic | 50.0% | |
| CCGGTGGAGGAACAAATGAT+GGG | - | tig0020453:5111-5130 | Msa1381710:intron | 50.0% | |
| CGGTGGAGGAACAAATGATG+GGG | - | tig0020453:5112-5131 | Msa1381710:intron | 50.0% | |
| CACAGCACAGTGGTGGTAAA+TGG | - | tig0020453:5414-5433 | Msa1381710:intron | 50.0% | |
| CATGCAAGTTACCCTCATCC+TGG | - | tig0020453:5503-5522 | Msa1381710:intron | 50.0% | |
| TCCTGTGGAACTGTATGGTG+AGG | - | tig0020453:5790-5809 | Msa1381710:CDS | 50.0% | |
| TCCTCACCATACAGTTCCAC+AGG | + | tig0020453:5794-5813 | None:intergenic | 50.0% | |
| GTGGAACTGTATGGTGAGGA+AGG | - | tig0020453:5794-5813 | Msa1381710:CDS | 50.0% | |
| TATGGTGAGGAAGGTCCTAC+AGG | - | tig0020453:5803-5822 | Msa1381710:CDS | 50.0% | |
| ATGGTGAGGAAGGTCCTACA+GGG | - | tig0020453:5804-5823 | Msa1381710:CDS | 50.0% | |
| CCTTGAGGCCATTGAGGAAG+AGG | + | tig0020453:3341-3360 | None:intergenic | 55.0% | |
| CCTCTTCCTCAATGGCCTCA+AGG | - | tig0020453:3338-3357 | Msa1381710:CDS | 55.0% | |
| AGCAGCAGAATCAACCGGCA+TGG | + | tig0020453:4589-4608 | None:intergenic | 55.0% | |
| TGGCTACCTCAACCTCCTGA+AGG | - | tig0020453:4615-4634 | Msa1381710:CDS | 55.0% | |
| ! | AGTTTGAGACCCTGTGACCG+TGG | - | tig0020453:4795-4814 | Msa1381710:intron | 55.0% |
| CCCTGTGACCGTGGTATGTT+AGG | - | tig0020453:4804-4823 | Msa1381710:intron | 55.0% | |
| CCCTAACATACCACGGTCAC+AGG | + | tig0020453:4808-4827 | None:intergenic | 55.0% | |
| ! | CACGGCATTGCTGATAGCGT+TGG | + | tig0020453:4921-4940 | None:intergenic | 55.0% |
| CAACGCTATCAGCAATGCCG+TGG | - | tig0020453:4919-4938 | Msa1381710:intron | 55.0% | |
| CGCCTCCAGAAACACCCTTT+CGG | + | tig0020453:5061-5080 | None:intergenic | 55.0% | |
| GGAGGCGAGACTATCGATGA+AGG | - | tig0020453:5074-5093 | Msa1381710:intron | 55.0% | |
| GGCGAGACTATCGATGAAGG+TGG | - | tig0020453:5077-5096 | Msa1381710:intron | 55.0% | |
| CCCGGTGGAGGAACAAATGA+TGG | - | tig0020453:5110-5129 | Msa1381710:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020453 | gene | 3048 | 6002 | 3048 | ID=Msa1381710;Name=Msa1381710 |
| tig0020453 | mRNA | 3048 | 6002 | 3048 | ID=Msa1381710-mRNA-1;Parent=Msa1381710;Name=Msa1381710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=95|1|1|1|1|1|2|134|608 |
| tig0020453 | exon | 3048 | 4791 | 3048 | ID=Msa1381710-mRNA-1:exon:7786;Parent=Msa1381710-mRNA-1 |
| tig0020453 | exon | 5691 | 6002 | 5691 | ID=Msa1381710-mRNA-1:exon:7785;Parent=Msa1381710-mRNA-1 |
| tig0020453 | five_prime_UTR | 5908 | 6002 | 5908 | ID=Msa1381710-mRNA-1:five_prime_utr;Parent=Msa1381710-mRNA-1 |
| tig0020453 | CDS | 5691 | 5907 | 5691 | ID=Msa1381710-mRNA-1:cds;Parent=Msa1381710-mRNA-1 |
| tig0020453 | CDS | 3182 | 4791 | 3182 | ID=Msa1381710-mRNA-1:cds;Parent=Msa1381710-mRNA-1 |
| tig0020453 | three_prime_UTR | 3048 | 3181 | 3048 | ID=Msa1381710-mRNA-1:three_prime_utr;Parent=Msa1381710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
