AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428560 MtrunA17_Chr2g0297281 97.826 690 15 0 1 690 61 750 0.0 1364
Msa1428560 MtrunA17_Chr4g0052411 85.879 694 94 3 1 690 1 694 0.0 1184
Msa1428560 MtrunA17_Chr7g0217421 84.615 364 56 0 216 579 29 392 0.0 648
Msa1428560 MtrunA17_Chr3g0143721 52.144 583 262 9 93 668 124 696 0.0 564
Msa1428560 MtrunA17_Chr7g0260601 46.185 498 243 12 201 683 214 701 1.29e-138 422
Msa1428560 MtrunA17_Chr1g0158881 49.666 449 205 4 227 673 330 759 2.35e-136 419
Msa1428560 MtrunA17_Chr6g0476861 43.403 523 258 10 155 668 143 636 7.02e-135 412
Msa1428560 MtrunA17_Chr4g0031821 45.833 480 240 11 208 678 301 769 9.08e-134 413
Msa1428560 MtrunA17_Chr8g0362771 46.835 474 223 8 206 670 218 671 1.38e-130 402
Msa1428560 MtrunA17_Chr3g0135721 46.087 460 225 6 224 677 222 664 2.55e-129 399
Msa1428560 MtrunA17_Chr7g0248361 46.018 452 223 9 226 668 192 631 4.50e-128 393
Msa1428560 MtrunA17_Chr3g0135761 46.827 457 218 7 220 670 218 655 2.36e-126 391
Msa1428560 MtrunA17_Chr5g0432631 43.053 511 254 10 167 670 183 663 1.41e-123 388
Msa1428560 MtrunA17_Chr5g0429571 49.330 448 214 9 212 647 299 745 6.57e-123 384
Msa1428560 MtrunA17_Chr3g0104211 54.090 379 162 8 226 593 304 681 5.16e-121 379
Msa1428560 MtrunA17_Chr3g0094871 43.624 447 227 8 226 668 11 436 8.48e-121 367
Msa1428560 MtrunA17_Chr5g0432641 42.950 461 241 8 216 669 179 624 3.53e-114 357
Msa1428560 MtrunA17_Chr8g0388371 37.248 545 290 12 184 686 359 893 2.03e-100 328
Msa1428560 MtrunA17_Chr1g0168321 41.481 405 187 10 207 601 144 508 2.09e-93 299
Msa1428560 MtrunA17_Chr2g0331161 40.435 460 241 8 220 669 409 845 4.44e-91 302
Msa1428560 MtrunA17_Chr6g0456351 52.518 278 126 3 212 486 303 577 1.10e-84 279
Msa1428560 MtrunA17_Chr3g0129971 38.697 491 267 10 207 681 276 748 4.25e-82 277
Msa1428560 MtrunA17_Chr8g0357301 35.590 458 251 11 243 663 487 937 1.20e-71 251
Msa1428560 MtrunA17_Chr5g0432391 35.123 447 209 9 224 661 50 424 1.39e-66 225
Msa1428560 MtrunA17_Chr3g0135781 58.919 185 66 3 206 387 36 213 8.30e-65 213
Msa1428560 MtrunA17_Chr8g0345461 40.625 256 151 1 220 474 159 414 9.28e-61 209
Msa1428560 MtrunA17_Chr1g0192151 40.152 264 147 2 228 490 169 422 1.05e-59 206
Msa1428560 MtrunA17_Chr4g0014731 40.152 264 147 2 228 490 170 423 1.18e-59 206
Msa1428560 MtrunA17_Chr4g0050561 41.463 246 142 2 227 470 157 402 1.24e-59 206
Msa1428560 MtrunA17_Chr1g0200081 40.625 256 150 2 220 474 169 423 7.95e-59 204
Msa1428560 MtrunA17_Chr1g0182711 41.633 245 142 1 227 470 189 433 3.22e-56 198
Msa1428560 MtrunA17_Chr7g0262801 41.633 245 142 1 227 470 188 432 7.77e-56 197
Msa1428560 MtrunA17_Chr2g0327121 46.696 227 117 3 226 451 207 430 1.17e-53 197
Msa1428560 MtrunA17_Chr2g0327121 42.424 231 130 2 222 451 478 706 5.77e-53 196
Msa1428560 MtrunA17_Chr7g0264521 42.424 231 130 2 222 451 477 705 1.62e-53 197
Msa1428560 MtrunA17_Chr7g0264521 45.374 227 120 3 226 451 206 429 5.52e-52 193
Msa1428560 MtrunA17_Chr3g0145011 40.789 228 134 1 225 451 138 365 4.68e-53 188
Msa1428560 MtrunA17_Chr3g0141901 40.789 228 134 1 225 451 135 362 5.55e-53 187
Msa1428560 MtrunA17_Chr7g0255651 44.493 227 125 1 226 451 282 508 1.17e-52 191
Msa1428560 MtrunA17_Chr7g0255651 31.081 222 139 5 250 464 38 252 4.05e-21 97.8
Msa1428560 MtrunA17_Chr1g0180791 45.815 227 119 3 226 451 205 428 1.45e-52 194
Msa1428560 MtrunA17_Chr1g0180791 42.424 231 130 2 222 451 476 704 1.93e-52 194
Msa1428560 MtrunA17_Chr3g0108321 48.889 180 91 1 226 404 159 338 1.82e-50 180
Msa1428560 MtrunA17_Chr2g0277831 45.532 235 120 5 218 449 527 756 5.12e-50 187
Msa1428560 MtrunA17_Chr2g0277831 43.922 255 129 4 205 452 223 470 2.89e-46 176
Msa1428560 MtrunA17_Chr7g0255721 42.667 225 127 2 226 449 685 908 9.34e-48 181
Msa1428560 MtrunA17_Chr7g0255721 41.589 214 121 2 257 469 416 626 4.46e-35 142
Msa1428560 MtrunA17_Chr7g0255691 44.493 227 125 1 226 451 286 512 2.47e-47 176
Msa1428560 MtrunA17_Chr7g0255691 34.661 251 137 8 229 465 20 257 7.59e-27 115
Msa1428560 MtrunA17_Chr7g0255901 39.695 262 148 7 222 477 637 894 1.16e-45 175
Msa1428560 MtrunA17_Chr7g0255641 40.000 225 133 2 226 449 658 881 1.75e-45 174
Msa1428560 MtrunA17_Chr7g0255641 40.201 199 113 4 264 461 432 625 2.15e-31 131
Msa1428560 MtrunA17_Chr4g0043381 41.256 223 127 2 228 449 839 1058 2.01e-44 172
Msa1428560 MtrunA17_Chr3g0135791 36.078 255 147 4 420 670 9 251 3.33e-43 157
Msa1428560 MtrunA17_Chr7g0217411 57.759 116 48 1 569 683 6 121 2.56e-42 149
Msa1428560 MtrunA17_Chr1g0190401 28.313 498 285 11 226 660 677 1165 1.06e-41 163
Msa1428560 MtrunA17_Chr2g0321241 42.241 232 122 8 212 439 120 343 1.22e-40 154
Msa1428560 MtrunA17_Chr2g0327231 45.455 165 87 2 222 385 344 506 1.46e-40 155
Msa1428560 MtrunA17_Chr2g0327231 41.758 91 50 1 226 316 153 240 3.18e-14 75.9
Msa1428560 MtrunA17_Chr3g0086411 36.782 261 142 5 222 463 211 467 2.09e-40 155
Msa1428560 MtrunA17_Chr3g0086411 43.421 152 68 4 313 452 7 152 2.87e-23 103
Msa1428560 MtrunA17_Chr3g0086401 37.698 252 127 6 222 449 381 626 2.20e-40 157
Msa1428560 MtrunA17_Chr3g0086401 40.586 239 119 7 228 452 94 323 6.43e-40 156
Msa1428560 MtrunA17_Chr4g0004121 37.302 252 144 5 220 462 236 482 2.67e-39 152
Msa1428560 MtrunA17_Chr4g0026631 41.379 232 124 8 212 439 115 338 2.98e-39 150
Msa1428560 MtrunA17_Chr8g0387641 39.732 224 128 5 226 446 521 740 9.66e-39 154
Msa1428560 MtrunA17_Chr4g0038101 38.865 229 126 6 225 446 720 941 3.06e-37 149
Msa1428560 MtrunA17_Chr6g0462581 41.778 225 123 6 225 446 499 718 4.17e-37 148
Msa1428560 MtrunA17_Chr5g0397121 39.556 225 129 5 225 446 512 732 6.65e-37 148
Msa1428560 MtrunA17_Chr1g0195741 40.529 227 125 6 225 446 937 1158 9.54e-37 148
Msa1428560 MtrunA17_Chr4g0033451 37.121 264 142 7 200 452 360 610 1.46e-36 147
Msa1428560 MtrunA17_Chr3g0116131 39.485 233 130 7 220 446 895 1122 5.16e-36 145
Msa1428560 MtrunA17_Chr6g0459561 38.136 236 129 8 220 447 376 602 1.09e-35 143
Msa1428560 MtrunA17_Chr1g0202371 38.261 230 124 7 225 446 396 615 1.70e-35 143
Msa1428560 MtrunA17_Chr1g0202381 39.556 225 127 6 226 446 468 687 5.08e-35 142
Msa1428560 MtrunA17_Chr1g0195731 38.326 227 130 6 225 446 933 1154 7.13e-35 142
Msa1428560 MtrunA17_Chr1g0204031 39.035 228 130 6 226 449 557 779 1.56e-34 140
Msa1428560 MtrunA17_Chr3g0127431 36.481 233 133 6 226 451 84 308 3.50e-33 132
Msa1428560 MtrunA17_Chr4g0047411 38.140 215 119 4 251 452 202 415 4.60e-33 135
Msa1428560 MtrunA17_Chr4g0052271 37.131 237 133 8 222 452 117 343 9.54e-33 130
Msa1428560 MtrunA17_Chr6g0459541 35.019 257 133 9 220 447 36 287 6.04e-32 127
Msa1428560 MtrunA17_Chr2g0316851 35.865 237 134 5 228 453 596 825 6.41e-32 133
Msa1428560 MtrunA17_Chr7g0246111 36.797 231 136 6 225 451 211 435 1.04e-31 129
Msa1428560 MtrunA17_Chr3g0127401 35.193 233 136 6 226 451 81 305 1.13e-30 124
Msa1428560 MtrunA17_Chr6g0459551 39.378 193 104 7 220 409 96 278 4.29e-26 111
Msa1428560 MtrunA17_Chr7g0217431 51.240 121 56 2 91 209 75 194 1.20e-23 99.4
Msa1428560 MtrunA17_Chr2g0289231 32.489 237 134 8 223 445 294 518 3.13e-23 104
Msa1428560 MtrunA17_Chr3g0135741 37.405 131 81 1 420 549 7 137 1.78e-19 85.5
Msa1428560 MtrunA17_Chr5g0432671 40.000 105 58 2 425 528 2 102 4.46e-17 77.4
Msa1428560 MtrunA17_Chr6g0459531 29.237 236 123 10 220 447 61 260 2.46e-16 80.9
Msa1428560 MtrunA17_Chr4g0062081 43.373 83 45 2 224 304 5 87 1.88e-13 67.0
Msa1428560 MtrunA17_Chr8g0392971 35.052 97 61 2 435 529 51 147 5.43e-13 67.4
Msa1428560 MtrunA17_Chr2g0315971 28.729 181 113 6 223 396 192 363 1.45e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428560 AT2G30950.1 83.650 685 100 6 1 680 1 678 0.0 1127
Msa1428560 AT2G30950.2 83.650 685 100 6 1 680 1 678 0.0 1127
Msa1428560 AT2G30950.3 83.650 685 100 6 1 680 1 678 0.0 1127
Msa1428560 AT2G30950.4 83.650 685 100 6 1 680 5 682 0.0 1127
Msa1428560 AT1G06430.1 82.895 684 100 4 1 680 1 671 0.0 1117
Msa1428560 AT1G06430.3 82.895 684 100 4 1 680 1 671 0.0 1117
Msa1428560 AT1G06430.2 82.895 684 100 4 1 680 1 671 0.0 1117
Msa1428560 AT5G15250.1 69.231 650 185 6 35 675 28 671 0.0 896
Msa1428560 AT5G15250.2 63.895 493 141 6 35 496 28 514 0.0 588
Msa1428560 AT5G42270.1 53.002 583 257 9 93 668 122 694 0.0 562
Msa1428560 AT1G50250.1 52.226 584 262 9 93 668 132 706 0.0 552
Msa1428560 AT5G53170.1 49.669 453 206 5 219 668 351 784 1.04e-136 421
Msa1428560 AT1G07510.1 47.228 451 221 9 226 670 324 763 6.05e-133 411
Msa1428560 AT2G26140.1 47.912 455 214 5 223 671 221 658 2.25e-131 404
Msa1428560 AT2G29080.1 47.556 450 222 7 226 670 319 759 1.02e-127 398
Msa1428560 AT3G47060.1 44.487 526 257 13 142 647 243 753 6.48e-125 390
Msa1428560 AT5G58870.1 53.298 379 165 8 226 593 326 703 5.38e-119 375
Msa1428560 AT4G23940.1 38.447 528 272 13 190 678 392 905 8.72e-100 327
Msa1428560 AT3G02450.1 49.695 328 146 4 148 473 267 577 1.39e-90 295
Msa1428560 AT3G16290.1 40.260 462 243 8 220 671 401 839 2.69e-89 298
Msa1428560 AT5G64580.1 38.086 491 270 10 207 681 293 765 2.35e-81 276
Msa1428560 AT1G79560.2 33.470 487 267 14 243 680 507 985 1.15e-65 234
Msa1428560 AT1G79560.3 34.136 457 255 12 243 661 507 955 2.26e-65 233
Msa1428560 AT1G79560.1 33.403 476 271 12 243 680 507 974 3.38e-65 233
Msa1428560 AT1G53750.1 40.625 256 151 1 220 474 159 414 1.57e-60 209
Msa1428560 AT3G05530.1 40.530 264 146 2 228 490 170 423 3.19e-60 208
Msa1428560 AT5G19990.2 41.463 246 142 2 227 470 101 346 1.59e-59 204
Msa1428560 AT5G19990.1 41.463 246 142 2 227 470 159 404 3.96e-59 205
Msa1428560 AT5G19990.3 41.463 246 142 2 227 470 159 404 3.96e-59 205
Msa1428560 AT5G20000.1 41.463 246 142 2 227 470 159 404 4.13e-59 205
Msa1428560 AT1G09100.1 39.773 264 148 2 228 490 169 422 1.71e-58 204
Msa1428560 AT1G53780.1 39.844 256 153 1 220 474 331 586 1.26e-56 203
Msa1428560 AT1G53780.4 39.844 256 153 1 220 474 331 586 1.26e-56 203
Msa1428560 AT1G53780.3 39.844 256 153 1 220 474 330 585 1.26e-56 203
Msa1428560 AT1G53780.2 39.844 256 153 1 220 474 352 607 1.43e-56 203
Msa1428560 AT5G58290.1 42.678 239 136 1 226 463 152 390 1.47e-56 198
Msa1428560 AT4G29040.1 40.816 245 144 1 227 470 186 430 5.45e-55 195
Msa1428560 AT2G20140.1 40.816 245 144 1 227 470 186 430 2.34e-54 193
Msa1428560 AT1G45000.1 41.228 228 133 1 225 451 135 362 5.78e-54 191
Msa1428560 AT5G43010.1 40.351 228 135 1 225 451 135 362 1.66e-53 189
Msa1428560 AT3G53230.1 42.424 231 130 2 222 451 476 704 2.19e-53 197
Msa1428560 AT3G53230.1 44.934 227 121 2 226 451 205 428 1.13e-51 192
Msa1428560 AT5G03340.1 42.424 231 130 2 222 451 475 703 6.31e-53 196
Msa1428560 AT5G03340.1 42.912 261 143 4 208 467 186 441 8.58e-53 196
Msa1428560 AT3G09840.1 42.912 261 143 4 208 467 186 441 7.51e-53 196
Msa1428560 AT3G09840.1 42.672 232 129 3 222 451 475 704 5.98e-49 184
Msa1428560 AT3G56690.1 44.444 225 123 2 226 449 721 944 2.33e-50 190
Msa1428560 AT3G56690.1 35.498 231 145 2 223 452 379 606 6.60e-38 152
Msa1428560 AT5G08470.1 43.049 223 123 2 228 449 843 1062 3.29e-45 174
Msa1428560 AT5G08470.3 43.049 223 123 2 228 449 834 1053 3.68e-45 174
Msa1428560 AT3G01610.2 41.833 251 120 6 218 453 222 461 2.85e-44 171
Msa1428560 AT3G01610.2 42.735 234 126 5 218 449 519 746 5.22e-39 155
Msa1428560 AT3G01610.1 41.833 251 120 6 218 453 222 461 2.95e-44 171
Msa1428560 AT3G01610.1 42.735 234 126 5 218 449 519 746 5.43e-39 155
Msa1428560 AT1G03000.1 40.851 235 131 6 222 452 653 883 6.62e-44 170
Msa1428560 AT2G03670.1 41.702 235 135 2 226 458 283 517 1.08e-43 166
Msa1428560 AT2G03670.1 32.283 254 154 5 230 472 23 269 3.41e-30 126
Msa1428560 AT1G05910.1 35.430 302 171 7 200 490 358 646 9.26e-41 161
Msa1428560 AT3G04340.1 26.078 510 307 11 223 670 778 1279 8.50e-39 155
Msa1428560 AT1G64110.2 40.000 225 128 5 225 446 517 737 1.16e-38 154
Msa1428560 AT1G64110.4 40.000 225 128 5 225 446 517 737 1.16e-38 154
Msa1428560 AT1G64110.1 40.000 225 128 5 225 446 512 732 1.16e-38 154
Msa1428560 AT1G64110.5 40.000 225 128 5 225 446 515 735 1.17e-38 154
Msa1428560 AT1G64110.3 40.000 225 128 5 225 446 515 735 1.17e-38 154
Msa1428560 AT1G80350.1 38.583 254 138 7 220 462 230 476 1.56e-38 150
Msa1428560 AT4G28000.2 40.000 225 127 6 225 446 516 735 1.25e-37 150
Msa1428560 AT4G28000.3 40.000 225 127 6 225 446 516 735 1.28e-37 150
Msa1428560 AT4G28000.1 40.000 225 127 6 225 446 514 733 1.32e-37 150
Msa1428560 AT1G50140.3 39.738 229 124 6 225 446 710 931 1.30e-36 148
Msa1428560 AT1G50140.1 39.738 229 124 6 225 446 710 931 1.30e-36 148
Msa1428560 AT1G50140.4 39.738 229 124 6 225 446 710 931 1.30e-36 148
Msa1428560 AT1G50140.2 39.738 229 124 6 225 446 688 909 1.39e-36 147
Msa1428560 AT1G50140.5 39.738 229 124 6 225 446 688 909 1.39e-36 147
Msa1428560 AT2G27600.1 39.655 232 128 8 212 439 117 340 1.64e-36 142
Msa1428560 AT5G52882.1 40.444 225 126 6 225 446 513 732 7.82e-36 145
Msa1428560 AT2G34560.1 36.475 244 144 6 223 461 97 334 9.29e-36 139
Msa1428560 AT4G02480.1 38.865 229 130 6 223 446 957 1180 1.40e-35 145
Msa1428560 AT2G34560.2 36.475 244 144 6 223 461 106 343 1.53e-35 139
Msa1428560 AT3G19740.1 37.751 249 137 7 225 466 700 937 3.82e-35 143
Msa1428560 AT1G02890.1 34.948 289 165 9 223 500 938 1214 1.29e-34 142
Msa1428560 AT3G27120.1 38.136 236 129 8 220 447 394 620 4.96e-34 139
Msa1428560 AT2G45500.4 36.402 239 138 7 225 457 79 309 6.64e-34 133
Msa1428560 AT2G45500.3 36.402 239 138 7 225 457 79 309 6.64e-34 133
Msa1428560 AT3G15120.2 35.714 238 131 6 228 452 728 956 4.22e-33 137
Msa1428560 AT3G15120.1 35.714 238 131 6 228 452 718 946 4.52e-33 137
Msa1428560 AT2G45500.2 36.402 239 138 7 225 457 212 442 6.34e-33 133
Msa1428560 AT2G45500.5 36.402 239 138 7 225 457 222 452 6.54e-33 133
Msa1428560 AT2G45500.1 36.402 239 138 7 225 457 216 446 6.66e-33 133
Msa1428560 AT4G04910.1 38.605 215 118 5 251 452 239 452 7.12e-33 135
Msa1428560 AT4G27680.1 32.117 274 165 9 223 482 78 344 8.52e-32 128
Msa1428560 AT4G24860.3 37.168 226 132 6 226 446 815 1035 5.02e-31 130
Msa1428560 AT5G53540.1 35.345 232 137 7 226 451 84 308 5.26e-31 126
Msa1428560 AT4G24860.1 37.168 226 132 6 226 446 817 1037 5.74e-31 130
Msa1428560 AT4G24860.2 37.168 226 132 6 226 446 813 1033 5.83e-31 130
Msa1428560 AT4G24860.4 37.168 226 132 6 226 446 790 1010 5.88e-31 130
Msa1428560 AT2G03670.2 32.283 254 154 5 230 472 23 269 7.11e-31 126
Msa1428560 AT2G03670.2 41.429 140 80 2 226 363 283 422 4.31e-21 97.1
Msa1428560 AT1G45000.2 40.288 139 82 1 226 363 136 274 1.39e-28 117
Msa1428560 AT1G62130.1 35.685 241 131 7 225 461 749 969 1.53e-28 122
Msa1428560 AT1G62130.2 35.685 241 131 7 225 461 742 962 1.61e-28 122
Msa1428560 AT4G04180.1 32.271 251 148 8 226 462 316 558 1.24e-25 112
Msa1428560 AT4G04180.2 32.271 251 148 8 226 462 311 553 1.28e-25 112
Msa1428560 AT5G08470.2 40.541 148 84 2 228 374 843 987 2.97e-25 112
Msa1428560 AT1G02890.2 31.597 288 148 10 223 500 938 1186 1.19e-23 107
Msa1428560 AT5G17760.1 30.168 179 108 5 227 396 217 387 4.77e-13 72.4
Msa1428560 AT2G18193.1 30.682 176 108 5 227 396 207 374 5.47e-12 69.3
Msa1428560 AT5G17740.1 28.333 180 109 5 227 394 209 380 2.42e-11 67.4

Find 219 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAGGTTTCTTGAGTATT+TGG 0.138375 tig0026376:-21219 Msa1428560:CDS
ATTTGGTTCCATTTGAAATT+TGG 0.159262 tig0026376:+20863 None:intergenic
GCTTTCCCTTTAATTGTTAT+TGG 0.165898 tig0026376:-20972 Msa1428560:CDS
CCTCCAGAATGTCTTATTCT+AGG 0.183281 tig0026376:-21235 Msa1428560:CDS
CCCGGTGGGTCTGGTTTATT+TGG 0.185037 tig0026376:-20903 Msa1428560:CDS
TCAAATGTCACTCCAGTATT+TGG 0.213015 tig0026376:+20846 None:intergenic
TATTGGTCCTTGGTCACTTA+TGG 0.235513 tig0026376:-18918 Msa1428560:CDS
AATCCTCCAATAACAATTAA+AGG 0.239333 tig0026376:+20966 None:intergenic
GTTGGCTTACCTGTATTATT+AGG 0.241397 tig0026376:-21296 Msa1428560:CDS
AATAGTGTCTTCCCAGTTCC+TGG 0.254550 tig0026376:+20699 None:intergenic
CAAGAAGAATGATGAATAAT+TGG 0.264420 tig0026376:+23179 None:intergenic
CAGTTGACGTTCCAGATATT+CGG 0.270918 tig0026376:-20014 Msa1428560:CDS
TGAATTTCTGAAGAAGTTCT+TGG 0.272185 tig0026376:+21075 None:intergenic
TCAGTCCTTCCCCGAATATC+TGG 0.273320 tig0026376:+20003 None:intergenic
GTTCCTTCAAAGTGTTAGTT+AGG 0.296934 tig0026376:-18518 Msa1428560:three_prime_UTR
TTGCAGATGGTAACCACATT+TGG 0.299762 tig0026376:-18950 Msa1428560:intron
GGGTCTGGTTTATTTGGTTT+TGG 0.306496 tig0026376:-20897 Msa1428560:CDS
CCTGAGAGATTCACTGCTAT+TGG 0.309132 tig0026376:-20759 Msa1428560:CDS
AGTTCGCGATTTATTCAAAA+AGG 0.318126 tig0026376:-20583 Msa1428560:CDS
GTTGAGATGTTTGTCGGTAT+TGG 0.319704 tig0026376:-20615 Msa1428560:CDS
ACGCTTGGCAAGGACGTAAA+TGG 0.320713 tig0026376:-21449 Msa1428560:CDS
AAACCTAGAATAAGACATTC+TGG 0.327601 tig0026376:+21232 None:intergenic
CTGAGAGATTCACTGCTATT+GGG 0.330268 tig0026376:-20758 Msa1428560:CDS
CAACTCTTTGCAAGAATTGT+TGG 0.330502 tig0026376:-19387 Msa1428560:CDS
CATCATTGGCATGCCTTGTT+GGG 0.343440 tig0026376:-21502 Msa1428560:CDS
AGAAAATAGAAGCTACAAAA+AGG 0.344794 tig0026376:+18418 None:intergenic
ACATTTGGAATGTCTGATAT+TGG 0.346842 tig0026376:-18935 Msa1428560:CDS
TTTCAAATGGAACCAAATAC+TGG 0.348187 tig0026376:-20858 Msa1428560:CDS
AAGAACTTCTTCAGAAATTC+AGG 0.350097 tig0026376:-21073 Msa1428560:CDS
TTTCTCCCGAGTTAGGTAAT+AGG 0.356316 tig0026376:-21133 Msa1428560:CDS
GCATCATTGGCATGCCTTGT+TGG 0.357346 tig0026376:-21503 Msa1428560:CDS
CCTATCCATACATACTTGTT+TGG 0.357375 tig0026376:-18457 Msa1428560:three_prime_UTR
GTCAAGCTCGGGGTCTTACT+TGG 0.359822 tig0026376:-19449 Msa1428560:CDS
TCTTGCAAAGAGTTGTTGTT+TGG 0.362072 tig0026376:+19395 None:intergenic
AATAACCAGTTTGGCTAAAC+AGG 0.363637 tig0026376:-19283 Msa1428560:intron
ACGGGAGGTCCCGGTGGGTC+TGG 0.365158 tig0026376:-20912 Msa1428560:CDS
AAATTGCATTGAAGCATATA+AGG 0.368891 tig0026376:-18781 Msa1428560:CDS
AGATTGATGATTCTATTGAT+AGG 0.371818 tig0026376:-19816 Msa1428560:CDS
AGGCAACGAGGCACTGGAAT+TGG 0.381383 tig0026376:-20507 Msa1428560:CDS
CTTCTCTCACGACGTTCATC+TGG 0.382691 tig0026376:-20939 Msa1428560:CDS
GATGGATTTGAGGGTAATAC+TGG 0.384174 tig0026376:-20432 Msa1428560:CDS
TCCAATCAGGTTGGAAAAGA+AGG 0.386612 tig0026376:+21001 None:intergenic
TGTTGTTTGGAGATTAGAGT+TGG 0.391889 tig0026376:+19408 None:intergenic
AAGTTGGGCATGCCATTTGC+GGG 0.394199 tig0026376:-19726 Msa1428560:intron
GAGGCTGTTTCTCCCGAGTT+AGG 0.394954 tig0026376:-21140 Msa1428560:CDS
TTCGCGTTTCCTAATAATAC+AGG 0.395023 tig0026376:+21287 None:intergenic
GTGACATTTGACGATGTTGC+TGG 0.397504 tig0026376:-20834 Msa1428560:CDS
AATACAAGGAGCGTTCTCTT+TGG 0.397758 tig0026376:+20560 None:intergenic
AGAGACCTGTTTAGCCAAAC+TGG 0.401118 tig0026376:+19278 None:intergenic
TTTGCAGCAAATAACCAGTT+TGG 0.406052 tig0026376:-19292 Msa1428560:CDS
GCAAGAATTGTTGGTGGACT+CGG 0.406720 tig0026376:-19378 Msa1428560:CDS
CATCCATTTCTGTCAAAAGT+TGG 0.407571 tig0026376:+20451 None:intergenic
TTGTCATTGCAGCAACCAAC+AGG 0.410085 tig0026376:-20404 Msa1428560:CDS
TTCTCCCGAGTTAGGTAATA+GGG 0.410483 tig0026376:-21132 Msa1428560:CDS
CTATTAGCTAAGGCTATTGC+CGG 0.410709 tig0026376:-20681 Msa1428560:CDS
GATACAGATGGCAGCATCAT+TGG 0.410781 tig0026376:-21516 Msa1428560:intron
AAGAAGTTCTTGGTTAAGTC+CGG 0.413184 tig0026376:+21085 None:intergenic
AAAGTTGATCTGTTTGAGAA+TGG 0.413970 tig0026376:-21179 Msa1428560:CDS
TCTGGTGGGACGGGAGGTCC+CGG 0.417541 tig0026376:-20921 Msa1428560:CDS
GGAAAGCGAGATTTCCAATC+AGG 0.417933 tig0026376:+20988 None:intergenic
CCAAAAGGAGTTCTTCTCAT+TGG 0.418141 tig0026376:-20726 Msa1428560:CDS
GAAGACGTCTCTTACTTTCT+CGG 0.418976 tig0026376:-21427 Msa1428560:CDS
AAAAGCCAAACAAGTATGTA+TGG 0.420045 tig0026376:+18452 None:intergenic
CCAATGAGAAGAACTCCTTT+TGG 0.420186 tig0026376:+20726 None:intergenic
ATGAGAACACCTGGCTTTAG+TGG 0.422828 tig0026376:-19916 Msa1428560:CDS
CAAGATTGTGGAAGTTCTAC+TGG 0.423532 tig0026376:-18738 Msa1428560:CDS
TTGAGTATTTGGACAAAGAC+AGG 0.423684 tig0026376:-21208 Msa1428560:CDS
AGTTGACGTTCCAGATATTC+GGG 0.426318 tig0026376:-20013 Msa1428560:CDS
GACAGAAATGGATGGATTTG+AGG 0.427230 tig0026376:-20442 Msa1428560:CDS
AGTTCCACGTGGTCAAGCTC+GGG 0.428138 tig0026376:-19460 Msa1428560:CDS
GGTGAGCCTGAAGTTACAAC+TGG 0.429944 tig0026376:-19327 Msa1428560:CDS
TAGTTCCACGTGGTCAAGCT+CGG 0.430253 tig0026376:-19461 Msa1428560:CDS
TTCTGTCAAAAGTTGGTTGA+GGG 0.432083 tig0026376:+20458 None:intergenic
ATCCTCCAATAACAATTAAA+GGG 0.434047 tig0026376:+20967 None:intergenic
CAATCTTGTCGATGGCTTCA+CGG 0.435139 tig0026376:+18753 None:intergenic
CTGGAGAAGGAGACAATTAC+CGG 0.435554 tig0026376:-18719 Msa1428560:CDS
ACAGAAATGGATGGATTTGA+GGG 0.436192 tig0026376:-20441 Msa1428560:CDS
ATCTAAGGCCAAATTTCAAA+TGG 0.437730 tig0026376:-20871 Msa1428560:CDS
GAGCTTGACCACGTGGAACT+AGG 0.438621 tig0026376:+19463 None:intergenic
CGAATTCAGATCTCTCCTTT+CGG 0.439865 tig0026376:-18693 Msa1428560:CDS
TTCCCTTTAATTGTTATTGG+AGG 0.439978 tig0026376:-20969 Msa1428560:CDS
GTGGGAAGGCAACGAGGCAC+TGG 0.443474 tig0026376:-20513 Msa1428560:CDS
GGTGGGACGGGAGGTCCCGG+TGG 0.443671 tig0026376:-20918 Msa1428560:CDS
ACCAAATAAACCAGACCCAC+CGG 0.448643 tig0026376:+20902 None:intergenic
ATAGTGTCTTCCCAGTTCCT+GGG 0.450120 tig0026376:+20700 None:intergenic
CTCTTTGCAAGAATTGTTGG+TGG 0.451084 tig0026376:-19384 Msa1428560:CDS
ACTGAAATACTAAAGGTTCA+TGG 0.451170 tig0026376:-19985 Msa1428560:CDS
GAGTTTGTTGAGATGTTTGT+CGG 0.453249 tig0026376:-20621 Msa1428560:CDS
ATTTCAGGCTTACCCGCAAA+TGG 0.454987 tig0026376:+19714 None:intergenic
GCCGCTCCAGTTGTAACTTC+AGG 0.457481 tig0026376:+19321 None:intergenic
TGTCCTAACTAACACTTTGA+AGG 0.457930 tig0026376:+18515 None:intergenic
TGGATTAATAAGAGAAATGA+TGG 0.459410 tig0026376:-23218 Msa1428560:five_prime_UTR
TGACTCTGCTTTATTGAGAC+CGG 0.460142 tig0026376:-20370 Msa1428560:CDS
TAGCAAGTCAACTGTGCTTA+CGG 0.466141 tig0026376:-23312 Msa1428560:five_prime_UTR
GCTGGTCGACGTGGAAAGGC+GGG 0.472606 tig0026376:-19853 Msa1428560:CDS
AAGGCTATTGCCGGTGAAGC+AGG 0.474642 tig0026376:-20672 Msa1428560:CDS
TAGTGGCATATCATGAAGTT+GGG 0.475871 tig0026376:-19741 Msa1428560:CDS
AATGAAGCTGCTATATTAGC+TGG 0.476361 tig0026376:-19871 Msa1428560:CDS
GAATGTCTGATATTGGTCCT+TGG 0.484443 tig0026376:-18928 Msa1428560:CDS
CTCGGAGACATTCATCATTG+AGG 0.488941 tig0026376:-21409 Msa1428560:CDS
GTTGTTTGGAGATTAGAGTT+GGG 0.490457 tig0026376:+19409 None:intergenic
TTAGTGGCATATCATGAAGT+TGG 0.494346 tig0026376:-19742 Msa1428560:CDS
AAATGGGACACCTGCTTCAC+CGG 0.495546 tig0026376:+20662 None:intergenic
ATTAGCTGGTCGACGTGGAA+AGG 0.495638 tig0026376:-19857 Msa1428560:CDS
TGGTCACGATCCTGTACAAA+AGG 0.497276 tig0026376:-19490 Msa1428560:CDS
TTGGCATGCCTTGTTGGGAG+TGG 0.502779 tig0026376:-21497 Msa1428560:CDS
CTCTCACGACGTTCATCTGG+TGG 0.504145 tig0026376:-20936 Msa1428560:CDS
AGAAGTTCTTGGTTAAGTCC+GGG 0.505245 tig0026376:+21086 None:intergenic
GATAGCAGAATCAATGTCTT+CGG 0.507463 tig0026376:+18829 None:intergenic
AAAGCATATGCTGATGAAGA+AGG 0.508027 tig0026376:-21266 Msa1428560:CDS
AAAGTGAACACAAAGGAAGA+AGG 0.508359 tig0026376:-21346 Msa1428560:CDS
CCAATAGCAGTGAATCTCTC+AGG 0.508456 tig0026376:+20759 None:intergenic
AGCTTGACCACGTGGAACTA+GGG 0.508918 tig0026376:+19464 None:intergenic
TGATAGGATTGTGGCTGGAA+TGG 0.515789 tig0026376:-19800 Msa1428560:CDS
CCAAACAAGTATGTATGGAT+AGG 0.516609 tig0026376:+18457 None:intergenic
GAAGTTGGGCATGCCATTTG+CGG 0.518217 tig0026376:-19727 Msa1428560:CDS
TGGGAAGAGCAAAAGTTTAG+TGG 0.520581 tig0026376:-19758 Msa1428560:CDS
AGAAAATTGAGTAGGTAAAG+AGG 0.523792 tig0026376:+18572 None:intergenic
CTGCACCCTATTACCTAACT+CGG 0.525297 tig0026376:+21127 None:intergenic
CGAGGCACTGGAATTGGTGG+AGG 0.525699 tig0026376:-20501 Msa1428560:CDS
CTGCTGAAGGAGTTGAAGTA+GGG 0.528069 tig0026376:+18639 None:intergenic
GAAGTTACAACTGGAGCGGC+TGG 0.528274 tig0026376:-19318 Msa1428560:CDS
TCTATTGATAGGATTGTGGC+TGG 0.531918 tig0026376:-19805 Msa1428560:CDS
TGACATTTGACGATGTTGCT+GGG 0.532102 tig0026376:-20833 Msa1428560:CDS
CAACGAGGCACTGGAATTGG+TGG 0.532250 tig0026376:-20504 Msa1428560:CDS
AAGTGAACACAAAGGAAGAA+GGG 0.532901 tig0026376:-21345 Msa1428560:CDS
ACTGCTGAAGGAGTTGAAGT+AGG 0.534782 tig0026376:+18638 None:intergenic
CAAAGTAATAAAATGACGCT+TGG 0.536288 tig0026376:-21464 Msa1428560:CDS
TGGGGTAGATGAAGCCAAGC+AGG 0.537936 tig0026376:-20814 Msa1428560:CDS
ATTGGGGCTCGCATACCAAA+AGG 0.538627 tig0026376:-20741 Msa1428560:CDS
CGACGTTCATCTGGTGGGAC+GGG 0.539005 tig0026376:-20930 Msa1428560:CDS
ATATAGCAGCTTCATTCAAG+AGG 0.539636 tig0026376:+19878 None:intergenic
ACAATTACAGAAAATTGAGT+AGG 0.541306 tig0026376:+18564 None:intergenic
GACGAAGAAATGAATGTGAC+GGG 0.541851 tig0026376:+23129 None:intergenic
GACTCTGCTTTATTGAGACC+GGG 0.543458 tig0026376:-20369 Msa1428560:CDS
TGTGGAAGTTCTACTGGAGA+AGG 0.543802 tig0026376:-18732 Msa1428560:CDS
TTTCTGTCAAAAGTTGGTTG+AGG 0.544666 tig0026376:+20457 None:intergenic
CCAAATAAACCAGACCCACC+GGG 0.544944 tig0026376:+20903 None:intergenic
TAGTGTCTTCCCAGTTCCTG+GGG 0.545048 tig0026376:+20701 None:intergenic
CAGATGAACGTCGTGAGAGA+AGG 0.546111 tig0026376:+20940 None:intergenic
GTCAAGAATATCAGCCCTGT+TGG 0.547630 tig0026376:+20389 None:intergenic
GTGGGACGGGAGGTCCCGGT+GGG 0.548554 tig0026376:-20917 Msa1428560:CDS
ACATACCTTAACAAAGAGGA+TGG 0.550065 tig0026376:+23021 None:intergenic
CAGTTGACTTGCTAGCTACA+AGG 0.551350 tig0026376:+23321 None:intergenic
ACTCAAACAGCAACTGCTGA+AGG 0.551950 tig0026376:+18626 None:intergenic
AGCGAGATTTCCAATCAGGT+TGG 0.553391 tig0026376:+20992 None:intergenic
CGACGTCATCATGAGAATGA+TGG 0.553613 tig0026376:-18879 Msa1428560:CDS
ACTCGGCGGCAGAGCTGCGG+AGG 0.559057 tig0026376:-19361 Msa1428560:CDS
ATTAGAGTTGGGTCGTCAGA+AGG 0.559540 tig0026376:+19420 None:intergenic
TACCTCCATAAAATCCTGCT+TGG 0.559846 tig0026376:+20800 None:intergenic
TGGACTCGGCGGCAGAGCTG+CGG 0.560160 tig0026376:-19364 Msa1428560:CDS
AAGCATATGCTGATGAAGAA+GGG 0.560162 tig0026376:-21265 Msa1428560:CDS
TGATGGTGATGTTTCTCTTG+AGG 0.561008 tig0026376:-19947 Msa1428560:CDS
GGGAAGGACTGAAATACTAA+AGG 0.561384 tig0026376:-19992 Msa1428560:CDS
ACTAAAGCCAGGTGTTCTCA+TGG 0.561775 tig0026376:+19918 None:intergenic
AACTTCCACAATCTTGTCGA+TGG 0.563894 tig0026376:+18745 None:intergenic
ACGACGTTCATCTGGTGGGA+CGG 0.564651 tig0026376:-20931 Msa1428560:CDS
AGAATAAGACATTCTGGAGG+AGG 0.565733 tig0026376:+21238 None:intergenic
TGAAGCCATCGACAAGATTG+TGG 0.568185 tig0026376:-18750 Msa1428560:CDS
GAGAGATCTGAATTCGTCTC+CGG 0.571703 tig0026376:+18700 None:intergenic
TGATTCTATTGATAGGATTG+TGG 0.572657 tig0026376:-19809 Msa1428560:CDS
AGCTGGTCGACGTGGAAAGG+CGG 0.573976 tig0026376:-19854 Msa1428560:CDS
AGATCAGCTCCACTAAAGCC+AGG 0.577078 tig0026376:+19907 None:intergenic
TGTTGATGAAATTGATGCTG+TGG 0.578699 tig0026376:-20532 Msa1428560:CDS
ATACCTTAACAAAGAGGATG+GGG 0.582506 tig0026376:+23023 None:intergenic
GAAGGAACTGTGATGACGGA+TGG 0.583014 tig0026376:-19778 Msa1428560:CDS
TAATAAAATGACGCTTGGCA+AGG 0.586263 tig0026376:-21459 Msa1428560:CDS
AGGATTGTGGCTGGAATGGA+AGG 0.586347 tig0026376:-19796 Msa1428560:CDS
GTAGTTGCCATGAGAACACC+TGG 0.586845 tig0026376:-19925 Msa1428560:CDS
TGAAATTCCACCCGAAAATG+TGG 0.587720 tig0026376:-18663 Msa1428560:CDS
ACCTGTCTATCAAAACGTCC+CGG 0.591214 tig0026376:+20351 None:intergenic
ACTTGCAGAACATTGACTCC+TGG 0.594685 tig0026376:-19510 Msa1428560:intron
CATACCTTAACAAAGAGGAT+GGG 0.596503 tig0026376:+23022 None:intergenic
TGGGAAGACACTATTAGCTA+AGG 0.597005 tig0026376:-20691 Msa1428560:CDS
TAAGTCCGGGGAGTTGAACT+CGG 0.599105 tig0026376:+21099 None:intergenic
AAATTGTTGAATGCCACAGT+TGG 0.602189 tig0026376:-21314 Msa1428560:CDS
ATGAAATTGATGCTGTGGGA+AGG 0.608530 tig0026376:-20527 Msa1428560:CDS
TAGTTAAACCACTCCCAACA+AGG 0.609628 tig0026376:+21489 None:intergenic
ACATTGATTCTGCTATCAAG+AGG 0.615241 tig0026376:-18823 Msa1428560:CDS
AGCATATGCTGATGAAGAAG+GGG 0.617134 tig0026376:-21264 Msa1428560:CDS
AGTGAACACAAAGGAAGAAG+GGG 0.617950 tig0026376:-21344 Msa1428560:CDS
GGAGACATTCATCATTGAGG+AGG 0.618330 tig0026376:-21406 Msa1428560:CDS
AATATCAGACATTCCAAATG+TGG 0.618608 tig0026376:+18937 None:intergenic
GTTGATGAAATTGATGCTGT+GGG 0.620027 tig0026376:-20531 Msa1428560:CDS
GTTCCACGTGGTCAAGCTCG+GGG 0.621848 tig0026376:-19459 Msa1428560:CDS
AGACGAAGAAATGAATGTGA+CGG 0.621919 tig0026376:+23128 None:intergenic
GAAGTTCTTGGTTAAGTCCG+GGG 0.622000 tig0026376:+21087 None:intergenic
CGAGTCCGAGTTCAACTCCC+CGG 0.622409 tig0026376:-21104 Msa1428560:CDS
TCTCACGACGTTCATCTGGT+GGG 0.622785 tig0026376:-20935 Msa1428560:CDS
TGAGAGATTCACTGCTATTG+GGG 0.624865 tig0026376:-20757 Msa1428560:CDS
TGAGTATTTGGACAAAGACA+GGG 0.625201 tig0026376:-21207 Msa1428560:CDS
GAGACATTCATCATTGAGGA+GGG 0.629920 tig0026376:-21405 Msa1428560:CDS
CGTTCATCTGGTGGGACGGG+AGG 0.632938 tig0026376:-20927 Msa1428560:CDS
ACGTTCCAGATATTCGGGGA+AGG 0.633581 tig0026376:-20008 Msa1428560:CDS
GAATTTCAACAAACTCCGAA+AGG 0.633837 tig0026376:+18678 None:intergenic
AGTTACATACCTTAACAAAG+AGG 0.635127 tig0026376:+23017 None:intergenic
TGCACCCTATTACCTAACTC+GGG 0.636078 tig0026376:+21128 None:intergenic
AATGGAAGGAACTGTGATGA+CGG 0.646046 tig0026376:-19782 Msa1428560:CDS
GACATTTGACGATGTTGCTG+GGG 0.649763 tig0026376:-20832 Msa1428560:CDS
CTGGTCGACGTGGAAAGGCG+GGG 0.654050 tig0026376:-19852 Msa1428560:CDS
AAGGAACTGTGATGACGGAT+GGG 0.656329 tig0026376:-19777 Msa1428560:CDS
GCTATATTAGCTGGTCGACG+TGG 0.657463 tig0026376:-19862 Msa1428560:CDS
GAGGCACTGGAATTGGTGGA+GGG 0.664313 tig0026376:-20500 Msa1428560:CDS
AGAATTGTTGGTGGACTCGG+CGG 0.672410 tig0026376:-19375 Msa1428560:CDS
AGACCCCGAGCTTGACCACG+TGG 0.672592 tig0026376:+19456 None:intergenic
TGTCATTGCAGCAACCAACA+GGG 0.674219 tig0026376:-20403 Msa1428560:CDS
GATGAGTCCATAAGTGACCA+AGG 0.675250 tig0026376:+18911 None:intergenic
CATCATTCTCATGATGACGT+CGG 0.676386 tig0026376:+18880 None:intergenic
AGTGTCTTCCCAGTTCCTGG+GGG 0.683851 tig0026376:+20702 None:intergenic
GAGAGAAACGTGTAATAACA+AGG 0.684213 tig0026376:+23151 None:intergenic
TAATACAGGTAAGCCAACTG+TGG 0.690690 tig0026376:+21301 None:intergenic
GTTGACGTTCCAGATATTCG+GGG 0.690814 tig0026376:-20012 Msa1428560:CDS
GCCTGAAGTTACAACTGGAG+CGG 0.692560 tig0026376:-19322 Msa1428560:CDS
TGGAACTATAGCTATTGTCG+AGG 0.695843 tig0026376:-21159 Msa1428560:CDS
TACCTTAACAAAGAGGATGG+GGG 0.712193 tig0026376:+23024 None:intergenic
CCTAGAATAAGACATTCTGG+AGG 0.722320 tig0026376:+21235 None:intergenic
GATGCTGTGGGAAGGCAACG+AGG 0.726272 tig0026376:-20519 Msa1428560:CDS
TTAGATCAAAGTGAACACAA+AGG 0.733504 tig0026376:-21353 Msa1428560:CDS
AAGGTAACCCTAGTTCCACG+TGG 0.814154 tig0026376:-19471 Msa1428560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATATAACTAAATTATT+GGG + tig0026376:19254-19273 None:intergenic 10.0%
!! TCAAAATATAACTAAATTAT+TGG + tig0026376:19255-19274 None:intergenic 10.0%
!! ATCAACAAAAATAAGAATTA+AGG + tig0026376:18775-18794 None:intergenic 15.0%
!!! TTGTATTTTTGTAGTTTATT+TGG - tig0026376:18994-19013 Msa1428560:intron 15.0%
!!! TTAGTTATATTTTGAGTTTT+TGG - tig0026376:19260-19279 Msa1428560:intron 15.0%
!!! TTGGTAAAAATATAGTATTT+TGG - tig0026376:19291-19310 Msa1428560:CDS 15.0%
!!! TATAGTATTTTGGAATAATT+AGG - tig0026376:19301-19320 Msa1428560:CDS 15.0%
!!! ATAGTATTTTGGAATAATTA+GGG - tig0026376:19302-19321 Msa1428560:CDS 15.0%
!! TAACAAAAATAAAATGCAAT+TGG + tig0026376:19330-19349 None:intergenic 15.0%
!!! AATTGCATTTTATTTTTGTT+AGG - tig0026376:19329-19348 Msa1428560:CDS 15.0%
!!! ATTGCATTTTATTTTTGTTA+GGG - tig0026376:19330-19349 Msa1428560:CDS 15.0%
!!! ATAAACTTTAAAATAGCTTA+TGG - tig0026376:19508-19527 Msa1428560:intron 15.0%
!! CTAATACAATATCAATAATA+GGG + tig0026376:19624-19643 None:intergenic 15.0%
!! ATCAAAAACTATATTAGTAA+AGG - tig0026376:20366-20385 Msa1428560:CDS 15.0%
!!! ATGATTGATGATTTTTATTT+TGG - tig0026376:21574-21593 Msa1428560:intron 15.0%
!! AGTAATTTACTCATTAATAA+GGG + tig0026376:21691-21710 None:intergenic 15.0%
!!! CTTTCATCATTTTGTATTTA+AGG + tig0026376:18497-18516 None:intergenic 20.0%
!! GATGAAAGAAAAAAACAAAT+TGG - tig0026376:18509-18528 Msa1428560:three_prime_UTR 20.0%
!!! GAAAATATTTTATTGTGTAG+TGG - tig0026376:19109-19128 Msa1428560:intron 20.0%
!!! TAGTATTTTGGAATAATTAG+GGG - tig0026376:19303-19322 Msa1428560:CDS 20.0%
!!! TCAAAATTTTCAGATTAGAA+TGG - tig0026376:19354-19373 Msa1428560:CDS 20.0%
!!! CAAAATTTTCAGATTAGAAT+GGG - tig0026376:19355-19374 Msa1428560:CDS 20.0%
!!! AAAATTTTCAGATTAGAATG+GGG - tig0026376:19356-19375 Msa1428560:CDS 20.0%
!! CCTAATACAATATCAATAAT+AGG + tig0026376:19625-19644 None:intergenic 20.0%
!! CCTATTATTGATATTGTATT+AGG - tig0026376:19622-19641 Msa1428560:intron 20.0%
!!! TTTTGTAATCAGAAATTAGT+TGG - tig0026376:20112-20131 Msa1428560:intron 20.0%
!! CAGTAATTTACTCATTAATA+AGG + tig0026376:21692-21711 None:intergenic 20.0%
!! TATTTCAGAACAAAATTTCT+CGG + tig0026376:22208-22227 None:intergenic 20.0%
!!! CTCATTTTCCATTTTTATTT+TGG - tig0026376:22532-22551 Msa1428560:intron 20.0%
!!! ATTTTCCATTTTTATTTTGG+TGG - tig0026376:22535-22554 Msa1428560:intron 20.0%
!!! TTTTCCATTTTTATTTTGGT+GGG - tig0026376:22536-22555 Msa1428560:intron 20.0%
! TGGATTAATAAGAGAAATGA+TGG - tig0026376:18529-18548 Msa1428560:three_prime_UTR 25.0%
! CAAGAAGAATGATGAATAAT+TGG + tig0026376:18571-18590 None:intergenic 25.0%
! ATAAGACGATTTAGCTAAAA+GGG + tig0026376:18828-18847 None:intergenic 25.0%
! TATAAGACGATTTAGCTAAA+AGG + tig0026376:18829-18848 None:intergenic 25.0%
! ATCCATAAAAACATCATCTT+TGG + tig0026376:19020-19039 None:intergenic 25.0%
!!! ATGATGTTTTTATGGATCAA+TGG - tig0026376:19023-19042 Msa1428560:intron 25.0%
! AAGTAGCTTATAAATAAGCA+GGG + tig0026376:19403-19422 None:intergenic 25.0%
! TACTAACATAAGCATTTGTA+AGG + tig0026376:19571-19590 None:intergenic 25.0%
! TTTATCTTGTAAAGTTGAGA+CGG - tig0026376:19683-19702 Msa1428560:intron 25.0%
! AAAGGAGAAAAACAAAGATT+TGG - tig0026376:19780-19799 Msa1428560:CDS 25.0%
!! AACAAAGATTTGGATGATTT+TGG - tig0026376:19790-19809 Msa1428560:CDS 25.0%
!! ACAAAGATTTGGATGATTTT+GGG - tig0026376:19791-19810 Msa1428560:CDS 25.0%
!! TGTGATTATTTTCATGTCTA+AGG - tig0026376:19846-19865 Msa1428560:CDS 25.0%
!! GTGATTATTTTCATGTCTAA+GGG - tig0026376:19847-19866 Msa1428560:CDS 25.0%
!! TATCTGAGTTTTTGTTCTTA+TGG - tig0026376:19922-19941 Msa1428560:CDS 25.0%
! AAATTTATGTACAGCATTTC+TGG - tig0026376:19981-20000 Msa1428560:CDS 25.0%
! AAGAAGAGAATCGAAAATAT+TGG + tig0026376:20211-20230 None:intergenic 25.0%
! ATCCTCCAATAACAATTAAA+GGG + tig0026376:20783-20802 None:intergenic 25.0%
! AATCCTCCAATAACAATTAA+AGG + tig0026376:20784-20803 None:intergenic 25.0%
!! ATTTGGTTCCATTTGAAATT+TGG + tig0026376:20887-20906 None:intergenic 25.0%
! TCATCAACAAAAACAATACA+AGG + tig0026376:21204-21223 None:intergenic 25.0%
!! TACTGAACATAATGTTTTGT+AGG - tig0026376:21707-21726 Msa1428560:intron 25.0%
!! AGATTGATGATTCTATTGAT+AGG - tig0026376:21931-21950 Msa1428560:intron 25.0%
!! GATAACTACAGTTTAATTTC+AGG + tig0026376:22051-22070 None:intergenic 25.0%
!!! TTTCCATTTTTATTTTGGTG+GGG - tig0026376:22537-22556 Msa1428560:intron 25.0%
! ATTAGATTACCATCAAAACA+AGG + tig0026376:22578-22597 None:intergenic 25.0%
!!! GTTTTGATGGTAATCTAATT+TGG - tig0026376:22579-22598 Msa1428560:intron 25.0%
! AAATTGCATTGAAGCATATA+AGG - tig0026376:22966-22985 Msa1428560:intron 25.0%
! ACAATTACAGAAAATTGAGT+AGG + tig0026376:23186-23205 None:intergenic 25.0%
!!! TACTTGTTTGGCTTTTTATT+TGG - tig0026376:23302-23321 Msa1428560:five_prime_UTR 25.0%
! AGAAAATAGAAGCTACAAAA+AGG + tig0026376:23332-23351 None:intergenic 25.0%
AGTTACATACCTTAACAAAG+AGG + tig0026376:18733-18752 None:intergenic 30.0%
!! TTGTCACATCATTGATTCAT+AGG - tig0026376:19075-19094 Msa1428560:intron 30.0%
TGATTCATAGGATAAACAAC+TGG - tig0026376:19087-19106 Msa1428560:intron 30.0%
GAAGTAGCTTATAAATAAGC+AGG + tig0026376:19404-19423 None:intergenic 30.0%
ATAAGCTACTTCTATAGCAA+AGG - tig0026376:19412-19431 Msa1428560:CDS 30.0%
!! TTTATTTTCATAAGCTCCTC+AGG + tig0026376:19493-19512 None:intergenic 30.0%
! ATAATAGGGTTTGTTTCGAT+TGG + tig0026376:19610-19629 None:intergenic 30.0%
TATTAGGTTATGCTGTTACT+TGG - tig0026376:19638-19657 Msa1428560:intron 30.0%
TTATCTTGTAAAGTTGAGAC+GGG - tig0026376:19684-19703 Msa1428560:intron 30.0%
TCTGATTACAAAAACCAACA+CGG + tig0026376:20105-20124 None:intergenic 30.0%
CAAAGTAATAAAATGACGCT+TGG - tig0026376:20283-20302 Msa1428560:intron 30.0%
TTAGATCAAAGTGAACACAA+AGG - tig0026376:20394-20413 Msa1428560:CDS 30.0%
AAACCTAGAATAAGACATTC+TGG + tig0026376:20518-20537 None:intergenic 30.0%
TTCTAGGTTTCTTGAGTATT+TGG - tig0026376:20528-20547 Msa1428560:CDS 30.0%
! AAAGTTGATCTGTTTGAGAA+TGG - tig0026376:20568-20587 Msa1428560:CDS 30.0%
! TGAATTTCTGAAGAAGTTCT+TGG + tig0026376:20675-20694 None:intergenic 30.0%
AAGAACTTCTTCAGAAATTC+AGG - tig0026376:20674-20693 Msa1428560:CDS 30.0%
GCTTTCCCTTTAATTGTTAT+TGG - tig0026376:20775-20794 Msa1428560:CDS 30.0%
! TTCCCTTTAATTGTTATTGG+AGG - tig0026376:20778-20797 Msa1428560:CDS 30.0%
!!! ATTTGGTTTTGGTCAATCTA+AGG - tig0026376:20861-20880 Msa1428560:CDS 30.0%
! ATCTAAGGCCAAATTTCAAA+TGG - tig0026376:20876-20895 Msa1428560:CDS 30.0%
TTTCAAATGGAACCAAATAC+TGG - tig0026376:20889-20908 Msa1428560:CDS 30.0%
AACCTGAGATTGAGAAAAAT+GGG + tig0026376:21104-21123 None:intergenic 30.0%
AGTTCGCGATTTATTCAAAA+AGG - tig0026376:21164-21183 Msa1428560:CDS 30.0%
ACTGAAATACTAAAGGTTCA+TGG - tig0026376:21762-21781 Msa1428560:intron 30.0%
TGATTCTATTGATAGGATTG+TGG - tig0026376:21938-21957 Msa1428560:intron 30.0%
AGTGTAACACGAATTCATTA+TGG + tig0026376:22122-22141 None:intergenic 30.0%
ATCTATTCTTTCGCTTAAAG+CGG + tig0026376:22681-22700 None:intergenic 30.0%
AAGGATAATGTAGGAAAATG+GGG + tig0026376:22737-22756 None:intergenic 30.0%
GAAGGATAATGTAGGAAAAT+GGG + tig0026376:22738-22757 None:intergenic 30.0%
AGAAGGATAATGTAGGAAAA+TGG + tig0026376:22739-22758 None:intergenic 30.0%
TTGTATCAGAAGGATAATGT+AGG + tig0026376:22746-22765 None:intergenic 30.0%
TATGACAAAGTTGTATCAGA+AGG + tig0026376:22756-22775 None:intergenic 30.0%
TGAAATGATATTCTTGCAGA+TGG - tig0026376:22784-22803 Msa1428560:intron 30.0%
AATATCAGACATTCCAAATG+TGG + tig0026376:22813-22832 None:intergenic 30.0%
! ACATTTGGAATGTCTGATAT+TGG - tig0026376:22812-22831 Msa1428560:intron 30.0%
AGAAAATTGAGTAGGTAAAG+AGG + tig0026376:23178-23197 None:intergenic 30.0%
AAAAGCCAAACAAGTATGTA+TGG + tig0026376:23298-23317 None:intergenic 30.0%
GAGAGAAACGTGTAATAACA+AGG + tig0026376:18599-18618 None:intergenic 35.0%
AGACGAAGAAATGAATGTGA+CGG + tig0026376:18622-18641 None:intergenic 35.0%
ATACCTTAACAAAGAGGATG+GGG + tig0026376:18727-18746 None:intergenic 35.0%
CATACCTTAACAAAGAGGAT+GGG + tig0026376:18728-18747 None:intergenic 35.0%
ACATACCTTAACAAAGAGGA+TGG + tig0026376:18729-18748 None:intergenic 35.0%
AAGGTATGTAACTATCTCTG+TGG - tig0026376:18740-18759 Msa1428560:CDS 35.0%
!! GGCCAAAGATGATGTTTTTA+TGG - tig0026376:19015-19034 Msa1428560:intron 35.0%
!!! TGAGTTTTTGGTGCTTCATT+TGG - tig0026376:19272-19291 Msa1428560:intron 35.0%
! TGTTTTCATTAGCTATCCTG+AGG - tig0026376:19474-19493 Msa1428560:CDS 35.0%
AAGGCTGTTTGGAAAATCTA+TGG + tig0026376:19552-19571 None:intergenic 35.0%
TAAGCATTTGTAAGGCTGTT+TGG + tig0026376:19563-19582 None:intergenic 35.0%
CTGCAAAAGCTAATCAGTTT+AGG - tig0026376:19740-19759 Msa1428560:CDS 35.0%
GCTAATCAGTTTAGGTGATT+TGG - tig0026376:19748-19767 Msa1428560:CDS 35.0%
!! GTGATTTGGTTCACAAAGAA+AGG - tig0026376:19762-19781 Msa1428560:CDS 35.0%
GTGCATCTAACTTCTCAATT+TGG - tig0026376:19869-19888 Msa1428560:CDS 35.0%
!! GTTGACTGAATTTGTTGTGT+TGG - tig0026376:20037-20056 Msa1428560:intron 35.0%
TTAAACTGAATACACCGTGT+TGG - tig0026376:20088-20107 Msa1428560:intron 35.0%
!!! CATCGCTTTTTCTTGTGATT+TGG + tig0026376:20175-20194 None:intergenic 35.0%
GAGAATCGAAAATATTGGTC+AGG + tig0026376:20206-20225 None:intergenic 35.0%
GATTCTCTTCTTGATACAGA+TGG - tig0026376:20219-20238 Msa1428560:intron 35.0%
TAATAAAATGACGCTTGGCA+AGG - tig0026376:20288-20307 Msa1428560:intron 35.0%
AAAGTGAACACAAAGGAAGA+AGG - tig0026376:20401-20420 Msa1428560:CDS 35.0%
AAGTGAACACAAAGGAAGAA+GGG - tig0026376:20402-20421 Msa1428560:CDS 35.0%
AAATTGTTGAATGCCACAGT+TGG - tig0026376:20433-20452 Msa1428560:CDS 35.0%
! GTTGGCTTACCTGTATTATT+AGG - tig0026376:20451-20470 Msa1428560:CDS 35.0%
TTCGCGTTTCCTAATAATAC+AGG + tig0026376:20463-20482 None:intergenic 35.0%
AAAGCATATGCTGATGAAGA+AGG - tig0026376:20481-20500 Msa1428560:CDS 35.0%
AAGCATATGCTGATGAAGAA+GGG - tig0026376:20482-20501 Msa1428560:CDS 35.0%
TTGAGTATTTGGACAAAGAC+AGG - tig0026376:20539-20558 Msa1428560:CDS 35.0%
TGAGTATTTGGACAAAGACA+GGG - tig0026376:20540-20559 Msa1428560:CDS 35.0%
AAGAAGTTCTTGGTTAAGTC+CGG + tig0026376:20665-20684 None:intergenic 35.0%
TCAAATGTCACTCCAGTATT+TGG + tig0026376:20904-20923 None:intergenic 35.0%
GAACCTGAGATTGAGAAAAA+TGG + tig0026376:21105-21124 None:intergenic 35.0%
!! GAGTTTGTTGAGATGTTTGT+CGG - tig0026376:21126-21145 Msa1428560:CDS 35.0%
! TGTTGATGAAATTGATGCTG+TGG - tig0026376:21215-21234 Msa1428560:CDS 35.0%
! GTTGATGAAATTGATGCTGT+GGG - tig0026376:21216-21235 Msa1428560:CDS 35.0%
! TTCTGTCAAAAGTTGGTTGA+GGG + tig0026376:21292-21311 None:intergenic 35.0%
! TTTCTGTCAAAAGTTGGTTG+AGG + tig0026376:21293-21312 None:intergenic 35.0%
! CAACCAACTTTTGACAGAAA+TGG - tig0026376:21293-21312 Msa1428560:CDS 35.0%
CATCCATTTCTGTCAAAAGT+TGG + tig0026376:21299-21318 None:intergenic 35.0%
! CAACTTTTGACAGAAATGGA+TGG - tig0026376:21297-21316 Msa1428560:CDS 35.0%
! ACAGAAATGGATGGATTTGA+GGG - tig0026376:21306-21325 Msa1428560:CDS 35.0%
CAGGTAAGTAAGATTGTGTT+AGG - tig0026376:21414-21433 Msa1428560:CDS 35.0%
AGCTACTCAAAAGTCAAAAC+AGG + tig0026376:21537-21556 None:intergenic 35.0%
GGCAGCAATAAAAAGTTTGA+TGG - tig0026376:21783-21802 Msa1428560:intron 35.0%
ATATAGCAGCTTCATTCAAG+AGG + tig0026376:21872-21891 None:intergenic 35.0%
AATGAAGCTGCTATATTAGC+TGG - tig0026376:21876-21895 Msa1428560:intron 35.0%
TTAGTGGCATATCATGAAGT+TGG - tig0026376:22005-22024 Msa1428560:intron 35.0%
TAGTGGCATATCATGAAGTT+GGG - tig0026376:22006-22025 Msa1428560:intron 35.0%
AGGAGAATCAAGCAAAACAA+TGG - tig0026376:22150-22169 Msa1428560:intron 35.0%
GTTGTTTGGAGATTAGAGTT+GGG + tig0026376:22341-22360 None:intergenic 35.0%
! TGTTGTTTGGAGATTAGAGT+TGG + tig0026376:22342-22361 None:intergenic 35.0%
! TCTTGCAAAGAGTTGTTGTT+TGG + tig0026376:22355-22374 None:intergenic 35.0%
CAACTCTTTGCAAGAATTGT+TGG - tig0026376:22360-22379 Msa1428560:intron 35.0%
TTTGCAGCAAATAACCAGTT+TGG - tig0026376:22455-22474 Msa1428560:intron 35.0%
AATAACCAGTTTGGCTAAAC+AGG - tig0026376:22464-22483 Msa1428560:intron 35.0%
CATCCCCACCAAAATAAAAA+TGG + tig0026376:22543-22562 None:intergenic 35.0%
! TTCTGAGCATTTTTGTGATC+AGG - tig0026376:22620-22639 Msa1428560:intron 35.0%
GTAGGAAAATGGGGAAAATA+AGG + tig0026376:22728-22747 None:intergenic 35.0%
GATAGCAGAATCAATGTCTT+CGG + tig0026376:22921-22940 None:intergenic 35.0%
!! ACATTGATTCTGCTATCAAG+AGG - tig0026376:22924-22943 Msa1428560:intron 35.0%
GAATTTCAACAAACTCCGAA+AGG + tig0026376:23072-23091 None:intergenic 35.0%
! GTTCCTTCAAAGTGTTAGTT+AGG - tig0026376:23229-23248 Msa1428560:five_prime_UTR 35.0%
TGTCCTAACTAACACTTTGA+AGG + tig0026376:23235-23254 None:intergenic 35.0%
CCAAACAAGTATGTATGGAT+AGG + tig0026376:23293-23312 None:intergenic 35.0%
CCTATCCATACATACTTGTT+TGG - tig0026376:23290-23309 Msa1428560:five_prime_UTR 35.0%
TAGCAAGTCAACTGTGCTTA+CGG - tig0026376:18435-18454 Msa1428560:three_prime_UTR 40.0%
GACGAAGAAATGAATGTGAC+GGG + tig0026376:18621-18640 None:intergenic 40.0%
TACCTTAACAAAGAGGATGG+GGG + tig0026376:18726-18745 None:intergenic 40.0%
!! TTGTGTAGTGGATGAAGAAC+TGG - tig0026376:19121-19140 Msa1428560:intron 40.0%
! TAGTGGATGAAGAACTGGAA+GGG - tig0026376:19126-19145 Msa1428560:intron 40.0%
TAAGTGCTTATTTACAGCGC+CGG - tig0026376:19193-19212 Msa1428560:intron 40.0%
ATTATTGGGCCATGTGTTGT+TGG + tig0026376:19240-19259 None:intergenic 40.0%
! GGTCTCCAAAGTGTTTAAGA+TGG - tig0026376:19377-19396 Msa1428560:CDS 40.0%
!!! CGCTTTTTCTTGTGATTTGG+AGG + tig0026376:20172-20191 None:intergenic 40.0%
TAGTTAAACCACTCCCAACA+AGG + tig0026376:20261-20280 None:intergenic 40.0%
GAAGACGTCTCTTACTTTCT+CGG - tig0026376:20320-20339 Msa1428560:intron 40.0%
GAGACATTCATCATTGAGGA+GGG - tig0026376:20342-20361 Msa1428560:intron 40.0%
AGTGAACACAAAGGAAGAAG+GGG - tig0026376:20403-20422 Msa1428560:CDS 40.0%
TAATACAGGTAAGCCAACTG+TGG + tig0026376:20449-20468 None:intergenic 40.0%
AGCATATGCTGATGAAGAAG+GGG - tig0026376:20483-20502 Msa1428560:CDS 40.0%
! AGAATAAGACATTCTGGAGG+AGG + tig0026376:20512-20531 None:intergenic 40.0%
CCTAGAATAAGACATTCTGG+AGG + tig0026376:20515-20534 None:intergenic 40.0%
! CCTCCAGAATGTCTTATTCT+AGG - tig0026376:20512-20531 Msa1428560:CDS 40.0%
TGGAACTATAGCTATTGTCG+AGG - tig0026376:20588-20607 Msa1428560:CDS 40.0%
TTTCTCCCGAGTTAGGTAAT+AGG - tig0026376:20614-20633 Msa1428560:CDS 40.0%
TTCTCCCGAGTTAGGTAATA+GGG - tig0026376:20615-20634 Msa1428560:CDS 40.0%
AGAAGTTCTTGGTTAAGTCC+GGG + tig0026376:20664-20683 None:intergenic 40.0%
! TCCTTCTTTTCCAACCTGAT+TGG - tig0026376:20745-20764 Msa1428560:CDS 40.0%
!! TCCAATCAGGTTGGAAAAGA+AGG + tig0026376:20749-20768 None:intergenic 40.0%
!! GGGTCTGGTTTATTTGGTTT+TGG - tig0026376:20850-20869 Msa1428560:CDS 40.0%
TGACATTTGACGATGTTGCT+GGG - tig0026376:20914-20933 Msa1428560:CDS 40.0%
! TGAAGCCAAGCAGGATTTTA+TGG - tig0026376:20942-20961 Msa1428560:CDS 40.0%
TACCTCCATAAAATCCTGCT+TGG + tig0026376:20950-20969 None:intergenic 40.0%
CTGAGAGATTCACTGCTATT+GGG - tig0026376:20989-21008 Msa1428560:CDS 40.0%
TGAGAGATTCACTGCTATTG+GGG - tig0026376:20990-21009 Msa1428560:CDS 40.0%
! CCAATGAGAAGAACTCCTTT+TGG + tig0026376:21024-21043 None:intergenic 40.0%
CCAAAAGGAGTTCTTCTCAT+TGG - tig0026376:21021-21040 Msa1428560:CDS 40.0%
TGGGAAGACACTATTAGCTA+AGG - tig0026376:21056-21075 Msa1428560:CDS 40.0%
CTATTAGCTAAGGCTATTGC+CGG - tig0026376:21066-21085 Msa1428560:CDS 40.0%
!! GTCCCATTTTTCTCAATCTC+AGG - tig0026376:21099-21118 Msa1428560:CDS 40.0%
GTTGAGATGTTTGTCGGTAT+TGG - tig0026376:21132-21151 Msa1428560:CDS 40.0%
!! AATACAAGGAGCGTTCTCTT+TGG + tig0026376:21190-21209 None:intergenic 40.0%
ATGAAATTGATGCTGTGGGA+AGG - tig0026376:21220-21239 Msa1428560:CDS 40.0%
! GACAGAAATGGATGGATTTG+AGG - tig0026376:21305-21324 Msa1428560:CDS 40.0%
! GATGGATTTGAGGGTAATAC+TGG - tig0026376:21315-21334 Msa1428560:CDS 40.0%
! TGACTCTGCTTTATTGAGAC+CGG - tig0026376:21377-21396 Msa1428560:CDS 40.0%
CAGTTGACGTTCCAGATATT+CGG - tig0026376:21733-21752 Msa1428560:intron 40.0%
AGTTGACGTTCCAGATATTC+GGG - tig0026376:21734-21753 Msa1428560:intron 40.0%
GGGAAGGACTGAAATACTAA+AGG - tig0026376:21755-21774 Msa1428560:intron 40.0%
! TGATGGTGATGTTTCTCTTG+AGG - tig0026376:21800-21819 Msa1428560:intron 40.0%
TCTATTGATAGGATTGTGGC+TGG - tig0026376:21942-21961 Msa1428560:intron 40.0%
AATGGAAGGAACTGTGATGA+CGG - tig0026376:21965-21984 Msa1428560:intron 40.0%
TGGGAAGAGCAAAAGTTTAG+TGG - tig0026376:21989-22008 Msa1428560:intron 40.0%
TCGTGTTACACTTCTATACG+AGG - tig0026376:22130-22149 Msa1428560:intron 40.0%
! ACTAGGGTTACCTTTTGTAC+AGG + tig0026376:22270-22289 None:intergenic 40.0%
CTCTTTGCAAGAATTGTTGG+TGG - tig0026376:22363-22382 Msa1428560:intron 40.0%
! GCTGCGGAGGAAATTATTTT+TGG - tig0026376:22399-22418 Msa1428560:intron 40.0%
!!! GCTATACGTCCTTGTTTTGA+TGG - tig0026376:22566-22585 Msa1428560:intron 40.0%
TTGCAGATGGTAACCACATT+TGG - tig0026376:22797-22816 Msa1428560:intron 40.0%
GAATGTCTGATATTGGTCCT+TGG - tig0026376:22819-22838 Msa1428560:intron 40.0%
TATTGGTCCTTGGTCACTTA+TGG - tig0026376:22829-22848 Msa1428560:intron 40.0%
! CATCATTCTCATGATGACGT+CGG + tig0026376:22870-22889 None:intergenic 40.0%
AACTTCCACAATCTTGTCGA+TGG + tig0026376:23005-23024 None:intergenic 40.0%
CAAGATTGTGGAAGTTCTAC+TGG - tig0026376:23009-23028 Msa1428560:intron 40.0%
CGAATTCAGATCTCTCCTTT+CGG - tig0026376:23054-23073 Msa1428560:five_prime_UTR 40.0%
TGAAATTCCACCCGAAAATG+TGG - tig0026376:23084-23103 Msa1428560:five_prime_UTR 40.0%
! TGAAGTAGGGACCACATTTT+CGG + tig0026376:23098-23117 None:intergenic 40.0%
!! CAGTTGACTTGCTAGCTACA+AGG + tig0026376:18429-18448 None:intergenic 45.0%
!! GTAGTGGATGAAGAACTGGA+AGG - tig0026376:19125-19144 Msa1428560:intron 45.0%
CAGGGCCATCTTAAACACTT+TGG + tig0026376:19385-19404 None:intergenic 45.0%
GATACAGATGGCAGCATCAT+TGG - tig0026376:20231-20250 Msa1428560:intron 45.0%
! CATCATTGGCATGCCTTGTT+GGG - tig0026376:20245-20264 Msa1428560:intron 45.0%
CTCGGAGACATTCATCATTG+AGG - tig0026376:20338-20357 Msa1428560:intron 45.0%
GGAGACATTCATCATTGAGG+AGG - tig0026376:20341-20360 Msa1428560:intron 45.0%
TGCACCCTATTACCTAACTC+GGG + tig0026376:20622-20641 None:intergenic 45.0%
CTGCACCCTATTACCTAACT+CGG + tig0026376:20623-20642 None:intergenic 45.0%
GAAGTTCTTGGTTAAGTCCG+GGG + tig0026376:20663-20682 None:intergenic 45.0%
AGCGAGATTTCCAATCAGGT+TGG + tig0026376:20758-20777 None:intergenic 45.0%
GGAAAGCGAGATTTCCAATC+AGG + tig0026376:20762-20781 None:intergenic 45.0%
ACCAAATAAACCAGACCCAC+CGG + tig0026376:20848-20867 None:intergenic 45.0%
GTGACATTTGACGATGTTGC+TGG - tig0026376:20913-20932 Msa1428560:CDS 45.0%
GACATTTGACGATGTTGCTG+GGG - tig0026376:20915-20934 Msa1428560:CDS 45.0%
! AGCCAAGCAGGATTTTATGG+AGG - tig0026376:20945-20964 Msa1428560:CDS 45.0%
! GCAGGATTTTATGGAGGTAG+TGG - tig0026376:20951-20970 Msa1428560:CDS 45.0%
CCAATAGCAGTGAATCTCTC+AGG + tig0026376:20991-21010 None:intergenic 45.0%
CCTGAGAGATTCACTGCTAT+TGG - tig0026376:20988-21007 Msa1428560:CDS 45.0%
ATAGTGTCTTCCCAGTTCCT+GGG + tig0026376:21050-21069 None:intergenic 45.0%
AATAGTGTCTTCCCAGTTCC+TGG + tig0026376:21051-21070 None:intergenic 45.0%
TTGTCATTGCAGCAACCAAC+AGG - tig0026376:21343-21362 Msa1428560:CDS 45.0%
TGTCATTGCAGCAACCAACA+GGG - tig0026376:21344-21363 Msa1428560:CDS 45.0%
GTCAAGAATATCAGCCCTGT+TGG + tig0026376:21361-21380 None:intergenic 45.0%
! GACTCTGCTTTATTGAGACC+GGG - tig0026376:21378-21397 Msa1428560:CDS 45.0%
ACCTGTCTATCAAAACGTCC+CGG + tig0026376:21399-21418 None:intergenic 45.0%
GTTGACGTTCCAGATATTCG+GGG - tig0026376:21735-21754 Msa1428560:intron 45.0%
ACTAAAGCCAGGTGTTCTCA+TGG + tig0026376:21832-21851 None:intergenic 45.0%
!! ATGAGAACACCTGGCTTTAG+TGG - tig0026376:21831-21850 Msa1428560:intron 45.0%
TGATAGGATTGTGGCTGGAA+TGG - tig0026376:21947-21966 Msa1428560:intron 45.0%
!! AAGGAACTGTGATGACGGAT+GGG - tig0026376:21970-21989 Msa1428560:intron 45.0%
ATTTCAGGCTTACCCGCAAA+TGG + tig0026376:22036-22055 None:intergenic 45.0%
!! ACTTGCAGAACATTGACTCC+TGG - tig0026376:22237-22256 Msa1428560:intron 45.0%
! TTTTGTACAGGATCGTGACC+AGG + tig0026376:22258-22277 None:intergenic 45.0%
TGGTCACGATCCTGTACAAA+AGG - tig0026376:22257-22276 Msa1428560:intron 45.0%
ATTAGAGTTGGGTCGTCAGA+AGG + tig0026376:22330-22349 None:intergenic 45.0%
!! GCAAGAATTGTTGGTGGACT+CGG - tig0026376:22369-22388 Msa1428560:intron 45.0%
AGAGACCTGTTTAGCCAAAC+TGG + tig0026376:22472-22491 None:intergenic 45.0%
CGCTTAAAGCGGAAAGTTTC+AGG + tig0026376:22670-22689 None:intergenic 45.0%
GATGAGTCCATAAGTGACCA+AGG + tig0026376:22839-22858 None:intergenic 45.0%
CGACGTCATCATGAGAATGA+TGG - tig0026376:22868-22887 Msa1428560:intron 45.0%
CAATCTTGTCGATGGCTTCA+CGG + tig0026376:22997-23016 None:intergenic 45.0%
TGAAGCCATCGACAAGATTG+TGG - tig0026376:22997-23016 Msa1428560:intron 45.0%
TGTGGAAGTTCTACTGGAGA+AGG - tig0026376:23015-23034 Msa1428560:intron 45.0%
CTGGAGAAGGAGACAATTAC+CGG - tig0026376:23028-23047 Msa1428560:five_prime_UTR 45.0%
GAGAGATCTGAATTCGTCTC+CGG + tig0026376:23050-23069 None:intergenic 45.0%
! GAAGTAGGGACCACATTTTC+GGG + tig0026376:23097-23116 None:intergenic 45.0%
CTGCTGAAGGAGTTGAAGTA+GGG + tig0026376:23111-23130 None:intergenic 45.0%
ACTGCTGAAGGAGTTGAAGT+AGG + tig0026376:23112-23131 None:intergenic 45.0%
ACTCAAACAGCAACTGCTGA+AGG + tig0026376:23124-23143 None:intergenic 45.0%
CTCCCCCATCCTCTTTGTTA+AGG - tig0026376:18721-18740 Msa1428560:CDS 50.0%
!! TATTTACAGCGCCGGCTGTT+TGG - tig0026376:19201-19220 Msa1428560:intron 50.0%
GCAAGCAGACCAACAACACA+TGG - tig0026376:19228-19247 Msa1428560:intron 50.0%
GCATCATTGGCATGCCTTGT+TGG - tig0026376:20244-20263 Msa1428560:intron 50.0%
ACGCTTGGCAAGGACGTAAA+TGG - tig0026376:20298-20317 Msa1428560:intron 50.0%
TAAGTCCGGGGAGTTGAACT+CGG + tig0026376:20651-20670 None:intergenic 50.0%
CAGATGAACGTCGTGAGAGA+AGG + tig0026376:20810-20829 None:intergenic 50.0%
CTTCTCTCACGACGTTCATC+TGG - tig0026376:20808-20827 Msa1428560:CDS 50.0%
TCTCACGACGTTCATCTGGT+GGG - tig0026376:20812-20831 Msa1428560:CDS 50.0%
CCAAATAAACCAGACCCACC+GGG + tig0026376:20847-20866 None:intergenic 50.0%
ATTGGGGCTCGCATACCAAA+AGG - tig0026376:21006-21025 Msa1428560:CDS 50.0%
TAGTGTCTTCCCAGTTCCTG+GGG + tig0026376:21049-21068 None:intergenic 50.0%
AAATGGGACACCTGCTTCAC+CGG + tig0026376:21088-21107 None:intergenic 50.0%
!! ACCGGGACGTTTTGATAGAC+AGG - tig0026376:21395-21414 Msa1428560:CDS 50.0%
ACGTTCCAGATATTCGGGGA+AGG - tig0026376:21739-21758 Msa1428560:intron 50.0%
TCAGTCCTTCCCCGAATATC+TGG + tig0026376:21747-21766 None:intergenic 50.0%
GTAGTTGCCATGAGAACACC+TGG - tig0026376:21822-21841 Msa1428560:intron 50.0%
AGATCAGCTCCACTAAAGCC+AGG + tig0026376:21843-21862 None:intergenic 50.0%
GCTATATTAGCTGGTCGACG+TGG - tig0026376:21885-21904 Msa1428560:intron 50.0%
ATTAGCTGGTCGACGTGGAA+AGG - tig0026376:21890-21909 Msa1428560:intron 50.0%
AGGATTGTGGCTGGAATGGA+AGG - tig0026376:21951-21970 Msa1428560:intron 50.0%
!! GAAGGAACTGTGATGACGGA+TGG - tig0026376:21969-21988 Msa1428560:intron 50.0%
! GAAGTTGGGCATGCCATTTG+CGG - tig0026376:22020-22039 Msa1428560:intron 50.0%
! AAGTTGGGCATGCCATTTGC+GGG - tig0026376:22021-22040 Msa1428560:intron 50.0%
AAGGTAACCCTAGTTCCACG+TGG - tig0026376:22276-22295 Msa1428560:intron 50.0%
AGCTTGACCACGTGGAACTA+GGG + tig0026376:22286-22305 None:intergenic 50.0%
TAGTTCCACGTGGTCAAGCT+CGG - tig0026376:22286-22305 Msa1428560:intron 50.0%
!! AGAATTGTTGGTGGACTCGG+CGG - tig0026376:22372-22391 Msa1428560:intron 50.0%
GGTGAGCCTGAAGTTACAAC+TGG - tig0026376:22420-22439 Msa1428560:intron 50.0%
GCCTGAAGTTACAACTGGAG+CGG - tig0026376:22425-22444 Msa1428560:intron 50.0%
GAGAGAGAGAGAGAGAGCAG+TGG + tig0026376:18684-18703 None:intergenic 55.0%
TGCTTGCACAGCCAAACAGC+CGG + tig0026376:19215-19234 None:intergenic 55.0%
! TTGGCATGCCTTGTTGGGAG+TGG - tig0026376:20250-20269 Msa1428560:intron 55.0%
!! GAGGCTGTTTCTCCCGAGTT+AGG - tig0026376:20607-20626 Msa1428560:CDS 55.0%
CTCTCACGACGTTCATCTGG+TGG - tig0026376:20811-20830 Msa1428560:CDS 55.0%
ACGACGTTCATCTGGTGGGA+CGG - tig0026376:20816-20835 Msa1428560:CDS 55.0%
! CCCGGTGGGTCTGGTTTATT+TGG - tig0026376:20844-20863 Msa1428560:CDS 55.0%
TGGGGTAGATGAAGCCAAGC+AGG - tig0026376:20933-20952 Msa1428560:CDS 55.0%
GTTCTTCTCATTGGTCCCCC+AGG - tig0026376:21030-21049 Msa1428560:CDS 55.0%
TCATTGGTCCCCCAGGAACT+GGG - tig0026376:21037-21056 Msa1428560:CDS 55.0%
AGTGTCTTCCCAGTTCCTGG+GGG + tig0026376:21048-21067 None:intergenic 55.0%
AAGGCTATTGCCGGTGAAGC+AGG - tig0026376:21075-21094 Msa1428560:CDS 55.0%
!! AGGCAACGAGGCACTGGAAT+TGG - tig0026376:21240-21259 Msa1428560:CDS 55.0%
!! CAACGAGGCACTGGAATTGG+TGG - tig0026376:21243-21262 Msa1428560:CDS 55.0%
!! GAGGCACTGGAATTGGTGGA+GGG - tig0026376:21247-21266 Msa1428560:CDS 55.0%
GAGCTTGACCACGTGGAACT+AGG + tig0026376:22287-22306 None:intergenic 55.0%
AGTTCCACGTGGTCAAGCTC+GGG - tig0026376:22287-22306 Msa1428560:intron 55.0%
GTCAAGCTCGGGGTCTTACT+TGG - tig0026376:22298-22317 Msa1428560:intron 55.0%
GCCGCTCCAGTTGTAACTTC+AGG + tig0026376:22429-22448 None:intergenic 55.0%
GAAGTTACAACTGGAGCGGC+TGG - tig0026376:22429-22448 Msa1428560:intron 55.0%
!! GTAGGGACCACATTTTCGGG+TGG + tig0026376:23094-23113 None:intergenic 55.0%
CGAGTCCGAGTTCAACTCCC+CGG - tig0026376:20643-20662 Msa1428560:CDS 60.0%
CGACGTTCATCTGGTGGGAC+GGG - tig0026376:20817-20836 Msa1428560:CDS 60.0%
CTCATTGGTCCCCCAGGAAC+TGG - tig0026376:21036-21055 Msa1428560:CDS 60.0%
GATGCTGTGGGAAGGCAACG+AGG - tig0026376:21228-21247 Msa1428560:CDS 60.0%
!! CGAGGCACTGGAATTGGTGG+AGG - tig0026376:21246-21265 Msa1428560:CDS 60.0%
AGCTGGTCGACGTGGAAAGG+CGG - tig0026376:21893-21912 Msa1428560:intron 60.0%
GTTCCACGTGGTCAAGCTCG+GGG - tig0026376:22288-22307 Msa1428560:intron 60.0%
CGTTCATCTGGTGGGACGGG+AGG - tig0026376:20820-20839 Msa1428560:CDS 65.0%
GTGGGAAGGCAACGAGGCAC+TGG - tig0026376:21234-21253 Msa1428560:CDS 65.0%
GCTGGTCGACGTGGAAAGGC+GGG - tig0026376:21894-21913 Msa1428560:intron 65.0%
CTGGTCGACGTGGAAAGGCG+GGG - tig0026376:21895-21914 Msa1428560:intron 65.0%
AGACCCCGAGCTTGACCACG+TGG + tig0026376:22294-22313 None:intergenic 65.0%
TCTGGTGGGACGGGAGGTCC+CGG - tig0026376:20826-20845 Msa1428560:CDS 70.0%
TGGACTCGGCGGCAGAGCTG+CGG - tig0026376:22383-22402 Msa1428560:intron 70.0%
GTGGGACGGGAGGTCCCGGT+GGG - tig0026376:20830-20849 Msa1428560:CDS 75.0%
ACGGGAGGTCCCGGTGGGTC+TGG - tig0026376:20835-20854 Msa1428560:CDS 75.0%
ACTCGGCGGCAGAGCTGCGG+AGG - tig0026376:22386-22405 Msa1428560:intron 75.0%
! GGTGGGACGGGAGGTCCCGG+TGG - tig0026376:20829-20848 Msa1428560:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0026376 gene 18415 23354 18415 ID=Msa1428560;Name=Msa1428560
tig0026376 mRNA 18415 23354 18415 ID=Msa1428560-mRNA-1;Parent=Msa1428560;Name=Msa1428560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=328|1|1|1|0.75|0.8|5|213|690
tig0026376 exon 18415 18966 18415 ID=Msa1428560-mRNA-1:exon:6030;Parent=Msa1428560-mRNA-1
tig0026376 exon 19284 19524 19284 ID=Msa1428560-mRNA-1:exon:6029;Parent=Msa1428560-mRNA-1
tig0026376 exon 19727 20040 19727 ID=Msa1428560-mRNA-1:exon:6028;Parent=Msa1428560-mRNA-1
tig0026376 exon 20353 21531 20353 ID=Msa1428560-mRNA-1:exon:6027;Parent=Msa1428560-mRNA-1
tig0026376 exon 23027 23354 23027 ID=Msa1428560-mRNA-1:exon:6026;Parent=Msa1428560-mRNA-1
tig0026376 five_prime_UTR 23027 23354 23027 ID=Msa1428560-mRNA-1:five_prime_utr;Parent=Msa1428560-mRNA-1
tig0026376 CDS 20353 21531 20353 ID=Msa1428560-mRNA-1:cds;Parent=Msa1428560-mRNA-1
tig0026376 CDS 19727 20040 19727 ID=Msa1428560-mRNA-1:cds;Parent=Msa1428560-mRNA-1
tig0026376 CDS 19284 19524 19284 ID=Msa1428560-mRNA-1:cds;Parent=Msa1428560-mRNA-1
tig0026376 CDS 18628 18966 18628 ID=Msa1428560-mRNA-1:cds;Parent=Msa1428560-mRNA-1
tig0026376 three_prime_UTR 18415 18627 18415 ID=Msa1428560-mRNA-1:three_prime_utr;Parent=Msa1428560-mRNA-1
Gene Sequence

>Msa1428560

ATGGCAGCATCATTGGCATGCCTTGTTGGGAGTGGTTTAACTACACAAAGTAATAAAATGACGCTTGGCAAGGACGTAAATGGAAGACGTCTCTTACTTTCTCGGAGACATTCATCATTGAGGAGGGCATCAAAAACTATATTAGTAAAGGCATTGTTAGATCAAAGTGAACACAAAGGAAGAAGGGGATTTCTGAAATTGTTGAATGCCACAGTTGGCTTACCTGTATTATTAGGAAACGCGAAAGCATATGCTGATGAAGAAGGGGTTTCCTCCTCCAGAATGTCTTATTCTAGGTTTCTTGAGTATTTGGACAAAGACAGGGTTAAAAAAGTTGATCTGTTTGAGAATGGAACTATAGCTATTGTCGAGGCTGTTTCTCCCGAGTTAGGTAATAGGGTGCAGCGAGTCCGAGTTCAACTCCCCGGACTTAACCAAGAACTTCTTCAGAAATTCAGGACAAAGAACATCGACTTTGCAGCTCATAATGCTCAAGAAGAGTCAGATTCCTTCTTTTCCAACCTGATTGGAAATCTCGCTTTCCCTTTAATTGTTATTGGAGGATTGTTCCTTCTCTCACGACGTTCATCTGGTGGGACGGGAGGTCCCGGTGGGTCTGGTTTATTTGGTTTTGGTCAATCTAAGGCCAAATTTCAAATGGAACCAAATACTGGAGTGACATTTGACGATGTTGCTGGGGTAGATGAAGCCAAGCAGGATTTTATGGAGGTAGTGGAGTTTCTAAAAAAGCCTGAGAGATTCACTGCTATTGGGGCTCGCATACCAAAAGGAGTTCTTCTCATTGGTCCCCCAGGAACTGGGAAGACACTATTAGCTAAGGCTATTGCCGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTCGGTATTGGTGCTTCTCGAGTTCGCGATTTATTCAAAAAGGCCAAAGAGAACGCTCCTTGTATTGTTTTTGTTGATGAAATTGATGCTGTGGGAAGGCAACGAGGCACTGGAATTGGTGGAGGGAACGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACTGGAATCATTGTCATTGCAGCAACCAACAGGGCTGATATTCTTGACTCTGCTTTATTGAGACCGGGACGTTTTGATAGACAGGTATCAGTTGACGTTCCAGATATTCGGGGAAGGACTGAAATACTAAAGGTTCATGGCAGCAATAAAAAGTTTGATGGTGATGTTTCTCTTGAGGTAGTTGCCATGAGAACACCTGGCTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGACGTGGAAAGGCGGGGATTTCATCAAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTGATGACGGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGCGGAACATTGACTCCTGGTCACGATCCTGTACAAAAGGTAACCCTAGTTCCACGTGGTCAAGCTCGGGGTCTTACTTGGTTCATTCCTTCTGACGACCCAACTCTAATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTCGGCGGCAGAGCTGCGGAGGAAATTATTTTTGGTGAGCCTGAAGTTACAACTGGAGCGGCTGGTGATTTGCAGCAAATAACCAGTTTGGCTAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACTCATCTCAAAATGCCGACGTCATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCCGAAGACATTGATTCTGCTATCAAGAGGCTCTCAGATGAAGCATATGAAATTGCATTGAAGCATATAAGGAACAACCGTGAAGCCATCGACAAGATTGTGGAAGTTCTACTGGAGAAGGAGACAATTACCGGAGACGAATTCAGATCTCTCCTTTCGGAGTTTGTTGAAATTCCACCCGAAAATGTGGTCCCTACTTCAACTCCTTCAGCAGTTGCTGTTTGA
Protein sequence

>Msa1428560

MAASLACLVGSGLTTQSNKMTLGKDVNGRRLLLSRRHSSLRRASKTILVKALLDQSEHKGRRGFLKLLNATVGLPVLLGNAKAYADEEGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLNQELLQKFRTKNIDFAAHNAQEESDSFFSNLIGNLAFPLIVIGGLFLLSRRSSGGTGGPGGSGLFGFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDIRGRTEILKVHGSNKKFDGDVSLEVVAMRTPGFSGADLANLLNEAAILAGRRGKAGISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDSSQNADVIMRMMARNSMSEKLAEDIDSAIKRLSDEAYEIALKHIRNNREAIDKIVEVLLEKETITGDEFRSLLSEFVEIPPENVVPTSTPSAVAV*