AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467480 MtrunA17_Chr7g0214451 81.416 113 21 0 5 117 76 188 1.66e-51 169
Msa0467480 MtrunA17_Chr1g0213631 78.448 116 25 0 2 117 25 140 7.15e-49 162
Msa0467480 MtrunA17_Chr1g0213611 78.761 113 24 0 5 117 121 233 1.61e-48 162
Msa0467480 MtrunA17_Chr2g0303731 63.393 112 41 0 5 116 69 180 1.96e-42 146
Msa0467480 MtrunA17_Chr8g0376611 61.818 110 42 0 7 116 4 113 3.12e-42 145
Msa0467480 MtrunA17_Chr2g0290181 69.643 112 34 0 5 116 70 181 8.20e-41 142
Msa0467480 MtrunA17_Chr8g0376631 66.372 113 38 0 5 117 69 181 3.27e-38 135
Msa0467480 MtrunA17_Chr2g0303701 62.500 112 42 0 5 116 69 180 5.46e-35 126
Msa0467480 MtrunA17_Chr8g0376601 57.522 113 48 0 5 117 69 181 2.23e-31 116
Msa0467480 MtrunA17_Chr5g0434231 55.435 92 41 0 1 92 1 92 3.24e-30 105
Msa0467480 MtrunA17_Chr2g0290161 68.182 88 28 0 5 92 3 90 2.36e-27 104
Msa0467480 MtrunA17_Chr3g0144261 45.098 102 56 0 7 108 46 147 2.55e-21 88.2
Msa0467480 MtrunA17_Chr1g0155221 46.364 110 58 1 9 118 93 201 1.04e-20 86.3
Msa0467480 MtrunA17_Chr4g0032021 46.154 104 56 0 7 110 145 248 1.33e-20 85.9
Msa0467480 MtrunA17_Chr4g0021771 38.596 114 70 0 2 115 92 205 3.99e-18 79.0
Msa0467480 MtrunA17_Chr6g0457781 42.727 110 61 2 7 115 149 257 1.06e-17 77.8
Msa0467480 MtrunA17_Chr8g0373181 43.269 104 59 0 9 112 91 194 1.31e-17 77.4
Msa0467480 MtrunA17_Chr2g0282031 37.931 116 72 0 2 117 90 205 1.31e-17 77.4
Msa0467480 MtrunA17_Chr7g0250881 44.681 94 52 0 7 100 109 202 3.27e-17 76.3
Msa0467480 MtrunA17_Chr5g0404191 41.346 104 61 0 9 112 94 197 3.59e-17 75.1
Msa0467480 MtrunA17_Chr7g0273281 40.909 110 64 1 9 118 106 214 1.09e-16 74.7
Msa0467480 MtrunA17_Chr4g0039651 41.237 97 57 0 7 103 94 190 1.10e-16 74.7
Msa0467480 MtrunA17_Chr2g0286721 40.196 102 61 0 9 110 93 194 1.82e-16 73.9
Msa0467480 MtrunA17_Chr5g0432581 42.268 97 56 0 15 111 69 165 4.37e-16 73.2
Msa0467480 MtrunA17_Chr7g0273271 37.273 110 68 1 9 118 71 179 5.25e-16 70.9
Msa0467480 MtrunA17_Chr4g0066581 41.176 102 60 0 9 110 96 197 7.48e-16 72.4
Msa0467480 MtrunA17_Chr8g0390521 35.537 121 77 1 2 122 55 174 1.80e-15 71.2
Msa0467480 MtrunA17_Chr4g0034681 33.628 113 75 0 5 117 70 182 2.04e-15 71.2
Msa0467480 MtrunA17_Chr6g0485661 36.134 119 75 1 2 120 95 212 2.36e-15 70.9
Msa0467480 MtrunA17_Chr3g0146061 39.216 102 62 0 7 108 48 149 2.75e-15 70.9
Msa0467480 MtrunA17_Chr5g0417611 33.019 106 71 0 13 118 92 197 3.21e-15 70.5
Msa0467480 MtrunA17_Chr4g0036021 34.653 101 66 0 17 117 79 179 4.98e-15 70.1
Msa0467480 MtrunA17_Chr3g0144361 34.513 113 74 0 5 117 68 180 1.16e-14 68.9
Msa0467480 MtrunA17_Chr8g0373191 41.509 106 42 1 9 114 83 168 2.27e-14 68.2
Msa0467480 MtrunA17_Chr5g0407441 32.692 104 70 0 7 110 48 151 2.81e-14 67.8
Msa0467480 MtrunA17_Chr1g0205681 33.898 118 74 1 1 118 84 197 3.94e-14 67.4
Msa0467480 MtrunA17_Chr3g0128171 33.945 109 69 1 10 118 44 149 6.92e-14 66.6
Msa0467480 MtrunA17_Chr8g0373531 39.175 97 59 0 15 111 69 165 2.88e-13 65.1
Msa0467480 MtrunA17_Chr4g0065324 30.769 117 77 1 3 119 90 202 1.07e-12 63.5
Msa0467480 MtrunA17_Chr3g0128081 32.479 117 75 2 2 118 84 196 1.10e-12 63.2
Msa0467480 MtrunA17_Chr8g0370141 33.654 104 69 0 7 110 48 151 1.34e-12 63.2
Msa0467480 MtrunA17_Chr8g0390261 33.333 90 60 0 30 119 111 200 1.64e-12 62.8
Msa0467480 MtrunA17_Chr5g0445601 31.579 95 65 0 25 119 106 200 1.80e-12 62.8
Msa0467480 MtrunA17_Chr4g0004821 35.294 85 55 0 7 91 80 164 2.06e-12 62.4
Msa0467480 MtrunA17_Chr6g0486681 34.444 90 59 0 30 119 111 200 2.79e-12 62.0
Msa0467480 MtrunA17_Chr6g0486671 34.444 90 59 0 30 119 111 200 2.79e-12 62.0
Msa0467480 MtrunA17_Chr4g0065311 31.579 95 65 0 25 119 100 194 3.02e-12 62.0
Msa0467480 MtrunA17_Chr4g0048051 31.915 94 64 0 25 118 103 196 3.32e-12 62.0
Msa0467480 MtrunA17_Chr6g0486021 36.471 85 54 0 7 91 94 178 3.89e-12 61.6
Msa0467480 MtrunA17_Chr3g0078791 34.615 104 65 1 15 118 41 141 5.18e-12 61.2
Msa0467480 MtrunA17_Chr1g0164851 31.818 110 71 1 2 111 85 190 9.90e-12 60.5
Msa0467480 MtrunA17_Chr7g0257631 30.526 95 66 0 25 119 140 234 9.90e-12 60.5
Msa0467480 MtrunA17_Chr1g0164871 31.818 110 71 1 2 111 85 190 1.24e-11 60.5
Msa0467480 MtrunA17_Chr4g0048411 32.979 94 63 0 25 118 103 196 2.06e-11 59.7
Msa0467480 MtrunA17_Chr7g0259471 37.255 102 64 0 9 110 84 185 2.90e-11 59.3
Msa0467480 MtrunA17_Chr1g0205671 34.545 110 68 1 2 111 84 189 3.52e-11 58.9
Msa0467480 MtrunA17_Chr5g0419321 31.731 104 71 0 7 110 76 179 4.54e-11 58.9
Msa0467480 MtrunA17_Chr5g0437021 36.145 83 53 0 29 111 108 190 6.43e-11 58.2
Msa0467480 MtrunA17_Chr5g0446681 35.955 89 54 1 17 105 61 146 6.62e-11 57.8
Msa0467480 MtrunA17_Chr3g0085971 36.585 82 52 0 30 111 107 188 9.21e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467480 AT2G43330.1 84.956 113 17 0 5 117 74 186 2.74e-46 156
Msa0467480 AT2G35740.1 65.179 112 39 0 5 116 69 180 2.76e-42 146
Msa0467480 AT1G30220.1 64.602 113 40 0 5 117 71 183 2.19e-37 133
Msa0467480 AT4G16480.2 64.865 111 39 0 6 116 71 181 4.09e-36 130
Msa0467480 AT4G16480.3 64.865 111 39 0 6 116 71 181 4.09e-36 130
Msa0467480 AT4G16480.1 64.865 111 39 0 6 116 71 181 4.09e-36 130
Msa0467480 AT4G35300.4 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0467480 AT4G35300.8 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0467480 AT4G35300.6 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0467480 AT4G35300.11 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0467480 AT4G35300.1 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0467480 AT4G35300.10 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0467480 AT4G35300.7 42.157 102 59 0 7 108 48 149 1.94e-19 83.2
Msa0467480 AT4G35300.9 42.157 102 59 0 7 108 48 149 2.13e-19 82.8
Msa0467480 AT4G35300.2 42.157 102 59 0 7 108 48 149 2.13e-19 82.8
Msa0467480 AT4G35300.3 42.157 102 59 0 7 108 48 149 2.13e-19 82.8
Msa0467480 AT5G59250.1 42.308 104 60 0 7 110 147 250 3.74e-19 82.4
Msa0467480 AT3G51490.1 42.157 102 59 0 7 108 48 149 4.45e-19 82.0
Msa0467480 AT3G51490.2 42.157 102 59 0 7 108 48 149 4.64e-19 82.0
Msa0467480 AT3G51490.3 41.414 99 58 0 10 108 1 99 4.63e-18 79.3
Msa0467480 AT1G20840.2 39.216 102 62 0 7 108 46 147 8.50e-18 78.6
Msa0467480 AT1G20840.1 39.216 102 62 0 7 108 46 147 8.50e-18 78.6
Msa0467480 AT5G16150.2 46.316 95 49 2 7 100 149 242 1.19e-17 77.8
Msa0467480 AT5G16150.1 46.316 95 49 2 7 100 149 242 1.19e-17 77.8
Msa0467480 AT5G16150.3 46.316 95 49 2 7 100 149 242 1.19e-17 77.8
Msa0467480 AT2G20780.2 43.564 101 57 0 15 115 47 147 2.69e-17 77.0
Msa0467480 AT2G20780.1 43.564 101 57 0 15 115 105 205 3.69e-17 76.6
Msa0467480 AT1G75220.1 43.269 104 59 0 9 112 92 195 3.78e-17 76.6
Msa0467480 AT1G19450.1 43.269 104 59 0 9 112 93 196 7.77e-17 75.5
Msa0467480 AT1G08930.1 41.176 102 60 0 9 110 102 203 6.44e-16 72.8
Msa0467480 AT1G08930.2 41.176 102 60 0 9 110 102 203 6.44e-16 72.8
Msa0467480 AT5G17010.1 42.268 97 56 0 7 103 96 192 8.31e-16 72.8
Msa0467480 AT5G17010.3 42.268 97 56 0 7 103 96 192 8.31e-16 72.8
Msa0467480 AT5G17010.4 42.268 97 56 0 7 103 96 192 8.31e-16 72.8
Msa0467480 AT5G17010.2 42.268 97 56 0 7 103 97 193 8.90e-16 72.4
Msa0467480 AT3G18830.1 38.835 103 63 0 15 117 86 188 1.71e-15 71.6
Msa0467480 AT2G18480.1 39.806 103 62 0 15 117 72 174 7.18e-15 70.1
Msa0467480 AT3G03090.1 38.614 101 58 1 7 103 96 196 1.44e-14 68.9
Msa0467480 AT4G36670.1 38.835 103 63 0 15 117 67 169 2.08e-14 68.6
Msa0467480 AT5G18840.1 36.434 129 70 2 9 125 88 216 5.09e-14 67.4
Msa0467480 AT1G08920.1 39.216 102 62 0 9 110 76 177 1.36e-13 66.2
Msa0467480 AT1G08920.2 39.216 102 62 0 9 110 76 177 1.42e-13 66.2
Msa0467480 AT1G08920.3 39.216 102 62 0 9 110 76 177 1.73e-13 65.9
Msa0467480 AT5G27360.3 37.624 101 63 0 9 109 127 227 2.64e-13 65.5
Msa0467480 AT5G27360.4 37.624 101 63 0 9 109 79 179 3.02e-13 65.5
Msa0467480 AT3G05150.1 36.667 120 69 1 13 125 83 202 3.60e-13 65.1
Msa0467480 AT3G05150.3 36.667 120 69 1 13 125 83 202 3.60e-13 65.1
Msa0467480 AT3G05150.2 36.667 120 69 1 13 125 83 202 3.69e-13 65.1
Msa0467480 AT5G27360.1 37.624 101 63 0 9 109 79 179 3.71e-13 65.1
Msa0467480 AT1G77210.2 33.333 96 64 0 24 119 105 200 4.17e-13 65.1
Msa0467480 AT1G77210.1 33.333 96 64 0 24 119 105 200 4.17e-13 65.1
Msa0467480 AT3G05165.6 36.082 97 62 0 13 109 78 174 4.47e-13 64.7
Msa0467480 AT3G05400.1 38.947 95 58 0 9 103 70 164 6.35e-13 64.3
Msa0467480 AT3G05165.4 36.082 97 62 0 13 109 78 174 7.58e-13 64.3
Msa0467480 AT3G05165.5 36.082 97 62 0 13 109 78 174 7.58e-13 64.3
Msa0467480 AT3G05165.3 36.082 97 62 0 13 109 78 174 8.27e-13 63.9
Msa0467480 AT3G05165.2 36.082 97 62 0 13 109 78 174 8.27e-13 63.9
Msa0467480 AT3G05165.1 36.082 97 62 0 13 109 78 174 8.27e-13 63.9
Msa0467480 AT1G50310.1 36.559 93 59 0 25 117 105 197 1.46e-12 63.5
Msa0467480 AT1G54730.10 38.235 102 63 0 9 110 76 177 1.90e-12 62.8
Msa0467480 AT1G54730.6 38.235 102 63 0 9 110 76 177 1.90e-12 62.8
Msa0467480 AT1G54730.8 38.235 102 63 0 9 110 76 177 2.35e-12 62.8
Msa0467480 AT1G54730.2 38.235 102 63 0 9 110 76 177 2.36e-12 62.8
Msa0467480 AT1G54730.9 38.235 102 63 0 9 110 76 177 2.59e-12 62.8
Msa0467480 AT1G54730.7 38.235 102 63 0 9 110 76 177 2.59e-12 62.8
Msa0467480 AT1G54730.5 38.235 102 63 0 9 110 76 177 2.60e-12 62.8
Msa0467480 AT1G54730.3 38.235 102 63 0 9 110 76 177 2.81e-12 62.4
Msa0467480 AT1G54730.11 38.235 102 63 0 9 110 76 177 2.82e-12 62.4
Msa0467480 AT1G54730.4 38.235 102 63 0 9 110 76 177 2.94e-12 62.4
Msa0467480 AT1G05030.2 38.372 86 53 0 7 92 71 156 2.95e-12 62.4
Msa0467480 AT3G20460.1 33.673 98 65 0 13 110 101 198 3.97e-12 62.0
Msa0467480 AT1G05030.1 38.372 86 53 0 7 92 123 208 4.06e-12 62.0
Msa0467480 AT2G16120.1 33.981 103 68 0 15 117 76 178 9.57e-12 61.2
Msa0467480 AT3G05155.1 38.947 95 58 0 9 103 71 165 1.55e-11 60.5
Msa0467480 AT3G05155.2 38.947 95 58 0 9 103 71 165 1.56e-11 60.1
Msa0467480 AT3G19940.1 37.931 87 54 0 25 111 105 191 2.75e-11 59.7
Msa0467480 AT5G26250.1 29.412 119 80 1 1 119 81 195 3.30e-11 59.7
Msa0467480 AT2G48020.3 36.275 102 65 0 9 110 72 173 3.43e-11 59.3
Msa0467480 AT2G48020.4 36.275 102 65 0 9 110 72 173 3.45e-11 59.3
Msa0467480 AT1G08890.1 37.895 95 59 0 9 103 71 165 3.55e-11 59.3
Msa0467480 AT3G05160.1 34.021 97 64 0 13 109 69 165 3.58e-11 59.3
Msa0467480 AT4G21480.1 30.476 105 73 0 13 117 91 195 3.60e-11 59.3
Msa0467480 AT2G48020.2 36.275 102 65 0 9 110 72 173 3.62e-11 59.3
Msa0467480 AT2G48020.1 36.275 102 65 0 9 110 72 173 3.62e-11 59.3
Msa0467480 AT3G05160.3 34.021 97 64 0 13 109 20 116 3.66e-11 59.3
Msa0467480 AT3G05160.2 34.021 97 64 0 13 109 20 116 3.66e-11 59.3
Msa0467480 AT1G11260.1 29.808 104 73 0 15 118 93 196 3.84e-11 59.3
Msa0467480 AT5G27350.1 34.653 101 66 0 9 109 75 175 4.77e-11 58.9
Msa0467480 AT4G04760.3 38.554 83 51 0 9 91 16 98 5.12e-11 58.9
Msa0467480 AT4G04760.1 38.554 83 51 0 9 91 75 157 6.14e-11 58.9
Msa0467480 AT1G08900.3 37.363 91 57 0 9 99 61 151 6.26e-11 58.5
Msa0467480 AT1G08900.5 37.363 91 57 0 9 99 27 117 6.72e-11 58.5
Msa0467480 AT4G04760.2 38.554 83 51 0 9 91 75 157 6.89e-11 58.5
Msa0467480 AT1G08900.4 37.363 91 57 0 9 99 69 159 7.32e-11 58.5
Msa0467480 AT1G08900.1 37.363 91 57 0 9 99 69 159 7.93e-11 58.5
Msa0467480 AT1G08900.2 37.363 91 57 0 9 99 69 159 7.93e-11 58.5
Msa0467480 AT2G16130.1 33.981 103 68 0 15 117 76 178 8.22e-11 58.5

Find 210 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCTAATTTAGTGATTTA+TGG 0.074783 3_3:+68792620 Msa0467480:three_prime_UTR
TTCTTAATGAACTTGTTTAA+TGG 0.149554 3_3:+68792975 Msa0467480:three_prime_UTR
GAATCACCATGTACTCAAAT+TGG 0.177630 3_3:+68793363 Msa0467480:three_prime_UTR
TATGGGTGGTTAGCAATTAT+TGG 0.221949 3_3:+68794671 Msa0467480:three_prime_UTR
TATCGTTACAAAGACATTAT+TGG 0.223834 3_3:+68795173 Msa0467480:three_prime_UTR
CATATAGTTTAAGTCATTAA+AGG 0.241745 3_3:+68793304 Msa0467480:three_prime_UTR
TTTAATCTGGTTGGGAATAT+AGG 0.242155 3_3:+68793205 Msa0467480:three_prime_UTR
TGTCATAAGTGATAAACTTT+TGG 0.244195 3_3:+68792399 Msa0467480:three_prime_UTR
AGTTGTTAGCTGCCACATTA+TGG 0.246628 3_3:+68795115 Msa0467480:three_prime_UTR
CTGTCTCTCTTACATATAAA+AGG 0.248859 3_3:+68792674 Msa0467480:three_prime_UTR
GCATTGGTTGGTGCAATTAT+TGG 0.255758 3_3:+68791750 Msa0467480:CDS
ATTCCCATCAAGATATATAT+TGG 0.255970 3_3:+68792563 Msa0467480:three_prime_UTR
TACCTCTTTAAACTTCTAAA+TGG 0.263710 3_3:-68792218 None:intergenic
TAACCATAAATCACTAAATT+AGG 0.277820 3_3:-68792623 None:intergenic
AATCCTCACCATCAGAAATA+AGG 0.280399 3_3:+68791964 Msa0467480:CDS
TTGTATTGCTGTTACCTGTT+AGG 0.291991 3_3:+68793498 Msa0467480:three_prime_UTR
GGTGGTAGTTTCGTGATTCT+TGG 0.293372 3_3:+68794875 Msa0467480:three_prime_UTR
CTTTAATGACTTAAACTATA+TGG 0.295951 3_3:-68793303 None:intergenic
TTAATGAAAACAGGTAATAT+TGG 0.297116 3_3:-68792757 None:intergenic
CAGATTCGCAAAGGATGGTT+TGG 0.300888 3_3:-68792811 None:intergenic
TTAGCCTTTCACTATGATAA+TGG 0.307196 3_3:-68793440 None:intergenic
TACTCTTGGATCAGTTGTTA+TGG 0.307618 3_3:+68791845 Msa0467480:CDS
ATAGTATGTAGGAATGTATC+TGG 0.312784 3_3:+68792176 Msa0467480:three_prime_UTR
CATGGCACCGGTCCCATTCC+TGG 0.314241 3_3:-68794722 None:intergenic
CTAAATTTGATACTTTAATC+TGG 0.315213 3_3:+68793192 Msa0467480:three_prime_UTR
GGTAATTGACTTCATCTTCT+AGG 0.316687 3_3:-68793859 None:intergenic
CTTCTATCTCTCATCGTTGC+TGG 0.319739 3_3:+68794494 Msa0467480:three_prime_UTR
TTATGCAATTTAAGCTCATT+TGG 0.320123 3_3:-68793048 None:intergenic
TTTGTGAGCTGCAGTATTAT+TGG 0.321156 3_3:+68795060 Msa0467480:three_prime_UTR
ATTGCTTATTTCATATTTGC+TGG 0.322622 3_3:+68792502 Msa0467480:three_prime_UTR
TAATGAAAACAGGTAATATT+GGG 0.326011 3_3:-68792756 None:intergenic
AACGCTGCTGGAACAATTCT+TGG 0.326350 3_3:+68794521 Msa0467480:three_prime_UTR
GCGTTCATAGTTATAGATAT+TGG 0.330173 3_3:-68793837 None:intergenic
TTCCCATCAAGATATATATT+GGG 0.332169 3_3:+68792564 Msa0467480:three_prime_UTR
GGCTGGATTAATGATGCTTT+TGG 0.333762 3_3:+68791786 Msa0467480:CDS
GGAATGTGTTCTTGGCAAAT+AGG 0.334285 3_3:+68795437 Msa0467480:three_prime_UTR
TAAGAGATGGAATGTGTTCT+TGG 0.339227 3_3:+68795429 Msa0467480:three_prime_UTR
AAGTGATAGCATATATTGTT+AGG 0.342922 3_3:+68792365 Msa0467480:three_prime_UTR
GCTGATGTTGTCTTTACTCT+TGG 0.351449 3_3:+68791831 Msa0467480:CDS
ATTTCTGATTCCGTTGGCCT+TGG 0.355335 3_3:+68794854 Msa0467480:three_prime_UTR
ACATTTACGAGGAGATTTAA+AGG 0.359397 3_3:-68792091 None:intergenic
TGCTTTATTAAAATTTCATT+AGG 0.361378 3_3:-68793548 None:intergenic
ATGGGTGGTTAGCAATTATT+GGG 0.363703 3_3:+68794672 Msa0467480:three_prime_UTR
AATGTCAATCCTTTCGTCTC+TGG 0.364858 3_3:-68794941 None:intergenic
TAGGAAAGATGAAGCTATTT+CGG 0.365028 3_3:+68793808 Msa0467480:three_prime_UTR
TTGGCCCTCTCAAGCTTGTC+AGG 0.369336 3_3:+68794578 Msa0467480:three_prime_UTR
ATCCTCACCATCAGAAATAA+GGG 0.369499 3_3:+68791965 Msa0467480:CDS
TGTTTGCTACTTCCGAAGTT+AGG 0.369759 3_3:+68795381 Msa0467480:three_prime_UTR
TTTGATACTTTAATCTGGTT+GGG 0.375716 3_3:+68793197 Msa0467480:three_prime_UTR
ATCAAGCATTCTGTTTCAAC+AGG 0.377714 3_3:-68792431 None:intergenic
ATAAGAATTAAGCGAAATAA+TGG 0.383788 3_3:+68795283 Msa0467480:three_prime_UTR
AGATGGATGCTGGGAGTTGC+TGG 0.385326 3_3:+68793587 Msa0467480:three_prime_UTR
TATGCAATTTAAGCTCATTT+GGG 0.389233 3_3:-68793047 None:intergenic
GCATGTCAGCTACTGTAAAC+TGG 0.392246 3_3:+68794795 Msa0467480:three_prime_UTR
GACTCCACAAATACAACCTA+TGG 0.396278 3_3:+68794653 Msa0467480:three_prime_UTR
CTTTCAATTTCTGATTCCGT+TGG 0.399504 3_3:+68794848 Msa0467480:three_prime_UTR
ATTTGATACTTTAATCTGGT+TGG 0.403195 3_3:+68793196 Msa0467480:three_prime_UTR
GGGATCTCTTCTTCCATATG+AGG 0.405698 3_3:-68794976 None:intergenic
CCCACAATCATTCAAATGGC+TGG 0.417824 3_3:+68794446 Msa0467480:three_prime_UTR
TGGGACATGGAGATGGATGC+TGG 0.419380 3_3:+68793577 Msa0467480:three_prime_UTR
ACAAATGAAACATTTAGAAC+TGG 0.419687 3_3:-68795042 None:intergenic
AGATTCGCAAAGGATGGTTT+GGG 0.420208 3_3:-68792810 None:intergenic
CATACACCTCGGAACTCTTC+AGG 0.420694 3_3:-68794767 None:intergenic
CTTACTAAATTAACTACTCT+TGG 0.421275 3_3:-68795410 None:intergenic
GGCCGTCTTCTAGTTGGCAT+TGG 0.421699 3_3:+68791900 Msa0467480:CDS
CTCTATTTCGACTTTCCAAT+AGG 0.423581 3_3:+68792246 Msa0467480:three_prime_UTR
GCAGAGAAAACTACAGGAAA+TGG 0.427348 3_3:-68792842 None:intergenic
GTTGTTAGCTGCCACATTAT+GGG 0.428047 3_3:+68795116 Msa0467480:three_prime_UTR
TAAAGGAAGCAAAGAAAGAT+AGG 0.428138 3_3:-68792074 None:intergenic
TGCCCCAATATATATCTTGA+TGG 0.428959 3_3:-68792567 None:intergenic
AAACATCTCTTCAATTGAAA+AGG 0.430989 3_3:-68795363 None:intergenic
TTGAAGAAGTGGCCCTCATA+TGG 0.431500 3_3:+68794963 Msa0467480:three_prime_UTR
CATGCTGTGTTAATGAAAAC+AGG 0.431746 3_3:-68792766 None:intergenic
GCGCTGGCAATCCTTTCTGC+AGG 0.440540 3_3:+68794611 Msa0467480:three_prime_UTR
ACAAATGTGCTTATGATAAC+TGG 0.441016 3_3:+68792002 Msa0467480:CDS
AGAAGACAGAGAAATGTAAA+GGG 0.443063 3_3:-68792886 None:intergenic
CCACCCATAGGTTGTATTTG+TGG 0.446371 3_3:-68794657 None:intergenic
TCTGATTCCGTTGGCCTTGG+TGG 0.448962 3_3:+68794857 Msa0467480:three_prime_UTR
GTTTACCCAATTTGAGTACA+TGG 0.449821 3_3:-68793369 None:intergenic
GTAGTTAATTTAGTAAGAGA+TGG 0.450293 3_3:+68795416 Msa0467480:three_prime_UTR
ATACTTGGCCGTCTTCTAGT+TGG 0.451275 3_3:+68791894 Msa0467480:CDS
GCAATTATTGGAGCAGCAAC+AGG 0.451312 3_3:+68791762 Msa0467480:CDS
AATCACCATGTACTCAAATT+GGG 0.453387 3_3:+68793364 Msa0467480:three_prime_UTR
CCCAGCCATTTGAATGATTG+TGG 0.454065 3_3:-68794447 None:intergenic
GAGGATTCTGCAATATATAC+AGG 0.455999 3_3:-68791948 None:intergenic
CACCATTTAGAAGTTTAAAG+AGG 0.456962 3_3:+68792216 Msa0467480:three_prime_UTR
TTGGAGCAGCAACAGGTGGC+TGG 0.458266 3_3:+68791769 Msa0467480:CDS
CAGTTCTGATTTCCGTTGAT+CGG 0.461506 3_3:-68793943 None:intergenic
TTAACCATGTATCCCGACTT+TGG 0.462032 3_3:+68795333 Msa0467480:three_prime_UTR
CCATGCAGGGCGAAGGAAGT+TGG 0.466366 3_3:+68794559 Msa0467480:three_prime_UTR
CTTCTAGTTGGCATTGGTGT+GGG 0.473241 3_3:+68791906 Msa0467480:CDS
AACTATTGTAAGCATGGCAT+TGG 0.474373 3_3:+68791734 Msa0467480:CDS
GTTGCTGGCATGAACGCTGC+TGG 0.476142 3_3:+68794509 Msa0467480:three_prime_UTR
TAGAAGAAGAGCTAACTGAT+TGG 0.476853 3_3:-68794477 None:intergenic
ATTTATCTAATTGACCATGC+AGG 0.482142 3_3:+68794545 Msa0467480:three_prime_UTR
TTGTGGAGTCAGATGATTGA+AGG 0.486137 3_3:-68794640 None:intergenic
GTAAATGTGCTTCTGATACT+TGG 0.488630 3_3:+68792106 Msa0467480:three_prime_UTR
GTGGCAGCTAACAACTCAAA+TGG 0.489208 3_3:-68795108 None:intergenic
GATGCATATGTTCTCATACT+TGG 0.489491 3_3:+68791879 Msa0467480:CDS
GAAGAGTTCCGAGGTGTATG+TGG 0.491124 3_3:+68794770 Msa0467480:three_prime_UTR
AAGAAGACAGAGAAATGTAA+AGG 0.491623 3_3:-68792887 None:intergenic
AGTATTATTGGACGCGAGCT+AGG 0.499495 3_3:+68795072 Msa0467480:three_prime_UTR
ACTTTCCAATAGGTCAGAAA+AGG 0.500603 3_3:+68792256 Msa0467480:three_prime_UTR
CCAGCCATTTGAATGATTGT+GGG 0.501345 3_3:-68794446 None:intergenic
GTCAGGTGCAACTGTAGCGC+TGG 0.505055 3_3:+68794595 Msa0467480:three_prime_UTR
CAGCCCCACAATCATTCAAA+TGG 0.506355 3_3:+68794442 Msa0467480:three_prime_UTR
AAAAGCCACCTTGGAGACTC+AGG 0.507127 3_3:-68793650 None:intergenic
GCGAAATAATGGTTCGTGGT+TGG 0.508139 3_3:+68795294 Msa0467480:three_prime_UTR
TGTCTCAATAACCTGAAGTC+CGG 0.508881 3_3:-68793981 None:intergenic
CTACTCTCTAAAGTAGAGGT+TGG 0.514834 3_3:-68793233 None:intergenic
AACGAACCCCTTATTTCTGA+TGG 0.515934 3_3:-68791972 None:intergenic
CCACAATCATTCAAATGGCT+GGG 0.517577 3_3:+68794447 Msa0467480:three_prime_UTR
AAATCATGGAAAGAAATGTC+AGG 0.518031 3_3:+68792926 Msa0467480:three_prime_UTR
AGTATGAGAACATATGCATC+TGG 0.518488 3_3:-68791876 None:intergenic
AAAAGGTTATCAACCAAAGT+CGG 0.519224 3_3:-68795346 None:intergenic
TCTTCTAGTTGGCATTGGTG+TGG 0.520316 3_3:+68791905 Msa0467480:CDS
TATAAGTGGCATGTTGTTTG+TGG 0.520344 3_3:+68793129 Msa0467480:three_prime_UTR
CAGGAATGGGACCGGTGCCA+TGG 0.520356 3_3:+68794723 Msa0467480:three_prime_UTR
AGTAACTAATAAGCTATAAG+TGG 0.521664 3_3:+68793115 Msa0467480:three_prime_UTR
AGGATTGACATTTGAAGAAG+TGG 0.524140 3_3:+68794952 Msa0467480:three_prime_UTR
CCAACTTCCTTCGCCCTGCA+TGG 0.525071 3_3:-68794559 None:intergenic
TTTCGCTCCAGGAATGGGAC+CGG 0.526032 3_3:+68794715 Msa0467480:three_prime_UTR
GGTGCCATGGACTGTGAACT+CGG 0.526228 3_3:+68794736 Msa0467480:three_prime_UTR
AAAGGTTATCAACCAAAGTC+GGG 0.528916 3_3:-68795345 None:intergenic
TGGTATGTATGATTGATATG+TGG 0.529093 3_3:+68795193 Msa0467480:three_prime_UTR
ATAGCTTATTAGTTACTGAC+TGG 0.529580 3_3:-68793109 None:intergenic
GATAGGCCTAACCTCGGTAA+AGG 0.531257 3_3:-68792057 None:intergenic
TAAAGCAGGTTCCTGGGACA+TGG 0.532937 3_3:+68793564 Msa0467480:three_prime_UTR
GGTATGTATGATTGATATGT+GGG 0.533355 3_3:+68795194 Msa0467480:three_prime_UTR
TCAACCAAAGTCGGGATACA+TGG 0.534540 3_3:-68795337 None:intergenic
GCTGCCACATTATGGGATGA+TGG 0.538182 3_3:+68795123 Msa0467480:three_prime_UTR
ACCTTCAGGAAAAGCCACCT+TGG 0.540795 3_3:-68793659 None:intergenic
TCAATTGCAGAGAAAACTAC+AGG 0.541638 3_3:-68792848 None:intergenic
TAGAAGCTTTAGACTAGAGA+GGG 0.542612 3_3:-68792722 None:intergenic
ACCCCTTATTTCTGATGGTG+AGG 0.546053 3_3:-68791967 None:intergenic
GACCTAGTTTAATAGTATGT+AGG 0.546542 3_3:+68792165 Msa0467480:three_prime_UTR
GGATCTCTTCTTCCATATGA+GGG 0.549442 3_3:-68794975 None:intergenic
AGCATCCATCTCCATGTCCC+AGG 0.551573 3_3:-68793575 None:intergenic
ATTTCCGAGTTCACAGTCCA+TGG 0.551756 3_3:-68794740 None:intergenic
TAAATCAGATTCGCAAAGGA+TGG 0.552209 3_3:-68792816 None:intergenic
GCCACCTTGGAGACTCAGGC+AGG 0.552412 3_3:-68793646 None:intergenic
GTGAGTCATAATCTTTACCC+TGG 0.552440 3_3:-68794997 None:intergenic
AAGAGTTCCGAGGTGTATGT+GGG 0.553039 3_3:+68794771 Msa0467480:three_prime_UTR
GGATACATGGTTAATCGAGC+TGG 0.553877 3_3:-68795324 None:intergenic
GCAGGAAACTATTGTAAGCA+TGG 0.557552 3_3:+68791728 Msa0467480:intron
GCCCCAATATATATCTTGAT+GGG 0.562772 3_3:-68792566 None:intergenic
TGATAGCATATATTGTTAGG+AGG 0.567509 3_3:+68792368 Msa0467480:three_prime_UTR
TATATATCTAAAGAATTGTG+AGG 0.568560 3_3:+68793396 Msa0467480:three_prime_UTR
GACTAGAGAGGGGACTGCAC+TGG 0.568609 3_3:-68792711 None:intergenic
TTGCACCTGACAAGCTTGAG+AGG 0.570360 3_3:-68794583 None:intergenic
TTTATCTAATTGACCATGCA+GGG 0.571092 3_3:+68794546 Msa0467480:three_prime_UTR
GGGACATGGAGATGGATGCT+GGG 0.571277 3_3:+68793578 Msa0467480:three_prime_UTR
AGGTTCCTGGGACATGGAGA+TGG 0.572155 3_3:+68793570 Msa0467480:three_prime_UTR
TTAAGCGAAATAATGGTTCG+TGG 0.574008 3_3:+68795290 Msa0467480:three_prime_UTR
ACGAAAGAACATTAGATACA+TGG 0.577039 3_3:+68793913 Msa0467480:three_prime_UTR
ACACAAAACTGAATAACAGC+TGG 0.577345 3_3:-68793614 None:intergenic
ATAAGTGGCATGTTGTTTGT+GGG 0.577891 3_3:+68793130 Msa0467480:three_prime_UTR
ATTGTAAGCATGGCATTGGT+TGG 0.582517 3_3:+68791738 Msa0467480:CDS
ACTGGCTTCCTCTCTCAAGA+AGG 0.585353 3_3:-68795024 None:intergenic
CGCTGGCAATCCTTTCTGCA+GGG 0.585990 3_3:+68794612 Msa0467480:three_prime_UTR
TTGTTTGTGCCAGAGACGAA+AGG 0.586090 3_3:+68794932 Msa0467480:three_prime_UTR
GATTCTTGGTGTTATATGTG+TGG 0.591951 3_3:+68794889 Msa0467480:three_prime_UTR
TAATTGACCATGCAGGGCGA+AGG 0.593131 3_3:+68794552 Msa0467480:three_prime_UTR
GAGTTCACAGTCCATGGCAC+CGG 0.593789 3_3:-68794734 None:intergenic
ATAGAAGCTTTAGACTAGAG+AGG 0.594943 3_3:-68792723 None:intergenic
TGAGTCATAATCTTTACCCT+GGG 0.594989 3_3:-68794996 None:intergenic
GTAACCATTATCATAGTGAA+AGG 0.597231 3_3:+68793436 Msa0467480:three_prime_UTR
ATATATCTAAAGAATTGTGA+GGG 0.599124 3_3:+68793397 Msa0467480:three_prime_UTR
CATATGGAAGAAGAGATCCC+AGG 0.601011 3_3:+68794979 Msa0467480:three_prime_UTR
ATCTTGCCTTTACCGAGGTT+AGG 0.602337 3_3:+68792051 Msa0467480:CDS
TTCCTACATACTATTAAACT+AGG 0.605824 3_3:-68792167 None:intergenic
ACTCCACAAATACAACCTAT+GGG 0.605854 3_3:+68794654 Msa0467480:three_prime_UTR
GAAGGTAAGACCCTGCAGAA+AGG 0.609504 3_3:-68794622 None:intergenic
TCTTGGCAGATTCCTAACTT+CGG 0.609872 3_3:-68795393 None:intergenic
GCTTATTAGTTACTGACTGG+TGG 0.612036 3_3:-68793106 None:intergenic
TCCCATCAAGATATATATTG+GGG 0.615451 3_3:+68792565 Msa0467480:three_prime_UTR
CAAAGAAAATATCACTACCC+TGG 0.616662 3_3:-68795554 None:intergenic
TATTGGGGCAGCATCACTGA+AGG 0.622561 3_3:+68792580 Msa0467480:three_prime_UTR
GTGGTAAATCAGATTCGCAA+AGG 0.623756 3_3:-68792820 None:intergenic
GAGAAAACTACAGGAAATGG+TGG 0.625183 3_3:-68792839 None:intergenic
TAATGACTTAAACTATATGG+TGG 0.625870 3_3:-68793300 None:intergenic
CGTAAATCTTGCCTTTACCG+AGG 0.629817 3_3:+68792046 Msa0467480:CDS
AATGAAAACAGGTAATATTG+GGG 0.631597 3_3:-68792755 None:intergenic
ATATGGAAGAAGAGATCCCA+GGG 0.632244 3_3:+68794980 Msa0467480:three_prime_UTR
AGAAGCTTTAGACTAGAGAG+GGG 0.633416 3_3:-68792721 None:intergenic
TCACAGAACCTTCTTGAGAG+AGG 0.633499 3_3:+68795016 Msa0467480:three_prime_UTR
TGCACCTGACAAGCTTGAGA+GGG 0.634150 3_3:-68794582 None:intergenic
GACAACATCAGCACTAAGTG+TGG 0.634913 3_3:-68791820 None:intergenic
TCCTGCCTGAGTCTCCAAGG+TGG 0.636112 3_3:+68793645 Msa0467480:three_prime_UTR
GAAACTACCACCAAGGCCAA+CGG 0.643740 3_3:-68794864 None:intergenic
CACCAATGCCAACTAGAAGA+CGG 0.643763 3_3:-68791902 None:intergenic
TACTTGGTAGTCAACTTGAG+TGG 0.646316 3_3:+68792122 Msa0467480:three_prime_UTR
TCCTCACCATCAGAAATAAG+GGG 0.648202 3_3:+68791966 Msa0467480:CDS
AATAATTGCTAACCACCCAT+AGG 0.652891 3_3:-68794669 None:intergenic
ACAACCATCATCCCATAATG+TGG 0.657138 3_3:-68795127 None:intergenic
GAGTTCCGAGGTGTATGTGG+GGG 0.660731 3_3:+68794773 Msa0467480:three_prime_UTR
CAGCCATTTGAATGATTGTG+GGG 0.661560 3_3:-68794445 None:intergenic
ATTATTGGAGCAGCAACAGG+TGG 0.665008 3_3:+68791765 Msa0467480:CDS
GTATCAGAAGCACATTTACG+AGG 0.678463 3_3:-68792102 None:intergenic
GAGAACATATGCATCTGGTG+CGG 0.680847 3_3:-68791871 None:intergenic
AGAGTTCCGAGGTGTATGTG+GGG 0.681402 3_3:+68794772 Msa0467480:three_prime_UTR
AATGTGCTTATGATAACTGG+TGG 0.683650 3_3:+68792005 Msa0467480:CDS
ATCTATCCTGAAGAGTTCCG+AGG 0.687042 3_3:+68794761 Msa0467480:three_prime_UTR
CGGTAAAGGCAAGATTTACG+AGG 0.690136 3_3:-68792043 None:intergenic
AAGAAAGATAGGCCTAACCT+CGG 0.690515 3_3:-68792063 None:intergenic
CCACAAATACAACCTATGGG+TGG 0.700140 3_3:+68794657 Msa0467480:three_prime_UTR
CTTGCTCAGAAACAGCTGTG+AGG 0.709753 3_3:-68793880 None:intergenic
GAATCACGAAACTACCACCA+AGG 0.713908 3_3:-68794871 None:intergenic
GTTTAATGGATGTTAGACCA+TGG 0.717192 3_3:+68792989 Msa0467480:three_prime_UTR
CAGTAGAAGAGATAACACCA+TGG 0.775351 3_3:-68793006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATCTTTAATATATAAAA+GGG - chr3_3:68791264-68791283 None:intergenic 10.0%
!! AATCATCTTTAATATATAAA+AGG - chr3_3:68791265-68791284 None:intergenic 10.0%
!! TATTAATCCATTAAATAAAT+GGG - chr3_3:68794068-68794087 None:intergenic 10.0%
!! AATTCAACAGTTAAAATTAT+GGG - chr3_3:68791379-68791398 None:intergenic 15.0%
!! TTAGTATACAAAAAATGAAA+AGG - chr3_3:68791546-68791565 None:intergenic 15.0%
!!! GATATAAAAAGCATATATAA+TGG + chr3_3:68792286-68792305 Msa0467480:three_prime_UTR 15.0%
!!! ATATGAAATAAGCAATTTTT+GGG - chr3_3:68792498-68792517 None:intergenic 15.0%
!!! AATATGAAATAAGCAATTTT+TGG - chr3_3:68792499-68792518 None:intergenic 15.0%
!!! TTATTTGTTGAAGTTTTATT+TGG + chr3_3:68793470-68793489 Msa0467480:three_prime_UTR 15.0%
!!! TGCTTTATTAAAATTTCATT+AGG - chr3_3:68793551-68793570 None:intergenic 15.0%
!!! TAATGAAATTTTAATAAAGC+AGG + chr3_3:68793550-68793569 Msa0467480:three_prime_UTR 15.0%
!! CTATTAATCCATTAAATAAA+TGG - chr3_3:68794069-68794088 None:intergenic 15.0%
!!! CATTTATTTAATGGATTAAT+AGG + chr3_3:68794067-68794086 Msa0467480:intron 15.0%
!! CAATTCAACAGTTAAAATTA+TGG - chr3_3:68791380-68791399 None:intergenic 20.0%
!!! CATAATTTTAACTGTTGAAT+TGG + chr3_3:68791378-68791397 Msa0467480:intron 20.0%
!!! AATTTTTTACAAGTAGTATG+CGG + chr3_3:68791463-68791482 Msa0467480:intron 20.0%
!!! TCATTTTTTGTATACTAATG+TGG + chr3_3:68791548-68791567 Msa0467480:intron 20.0%
!!! CATTTTTTGTATACTAATGT+GGG + chr3_3:68791549-68791568 Msa0467480:intron 20.0%
!!! ATTTTTTGTATACTAATGTG+GGG + chr3_3:68791550-68791569 Msa0467480:intron 20.0%
!! TAACCATAAATCACTAAATT+AGG - chr3_3:68792626-68792645 None:intergenic 20.0%
!! TAATGAAAACAGGTAATATT+GGG - chr3_3:68792759-68792778 None:intergenic 20.0%
!! TTAATGAAAACAGGTAATAT+TGG - chr3_3:68792760-68792779 None:intergenic 20.0%
!!! TTCTTAATGAACTTGTTTAA+TGG + chr3_3:68792975-68792994 Msa0467480:three_prime_UTR 20.0%
!! CTAAATTTGATACTTTAATC+TGG + chr3_3:68793192-68793211 Msa0467480:three_prime_UTR 20.0%
!! CTTTAATGACTTAAACTATA+TGG - chr3_3:68793306-68793325 None:intergenic 20.0%
!! CATATAGTTTAAGTCATTAA+AGG + chr3_3:68793304-68793323 Msa0467480:three_prime_UTR 20.0%
!! TATATATCTAAAGAATTGTG+AGG + chr3_3:68793396-68793415 Msa0467480:three_prime_UTR 20.0%
!! ATATATCTAAAGAATTGTGA+GGG + chr3_3:68793397-68793416 Msa0467480:three_prime_UTR 20.0%
!! AATTAAAGAAAAATCCTAAC+AGG - chr3_3:68793515-68793534 None:intergenic 20.0%
!!! TTTTTTTTATGCATTACGTT+TGG + chr3_3:68793709-68793728 Msa0467480:intron 20.0%
!!! TTTTTTTATGCATTACGTTT+GGG + chr3_3:68793710-68793729 Msa0467480:intron 20.0%
!!! AAACTGTTATTTGTGATTTT+AGG + chr3_3:68794101-68794120 Msa0467480:intron 20.0%
!!! AACTGTTATTTGTGATTTTA+GGG + chr3_3:68794102-68794121 Msa0467480:intron 20.0%
!!! CTAAAGAATTCTTTTTCAAA+TGG + chr3_3:68794246-68794265 Msa0467480:intron 20.0%
!! CTGCATAATAATGAAAATAT+GGG - chr3_3:68794381-68794400 None:intergenic 20.0%
!!! TTTTGGGAGAATTTTAATTT+AGG + chr3_3:68795236-68795255 Msa0467480:three_prime_UTR 20.0%
!! ATAAGAATTAAGCGAAATAA+TGG + chr3_3:68795283-68795302 Msa0467480:three_prime_UTR 20.0%
!!! AAGATGATTTTGATGATGTT+CGG + chr3_3:68791276-68791295 Msa0467480:intron 25.0%
!!! TTTTTTGTATACTAATGTGG+GGG + chr3_3:68791551-68791570 Msa0467480:intron 25.0%
! TTCCTACATACTATTAAACT+AGG - chr3_3:68792170-68792189 None:intergenic 25.0%
! TACCTCTTTAAACTTCTAAA+TGG - chr3_3:68792221-68792240 None:intergenic 25.0%
!! AGCATAAATCACATATTTTG+AGG + chr3_3:68792309-68792328 Msa0467480:three_prime_UTR 25.0%
! AAGTGATAGCATATATTGTT+AGG + chr3_3:68792365-68792384 Msa0467480:three_prime_UTR 25.0%
!! TGTCATAAGTGATAAACTTT+TGG + chr3_3:68792399-68792418 Msa0467480:three_prime_UTR 25.0%
! ATTGCTTATTTCATATTTGC+TGG + chr3_3:68792502-68792521 Msa0467480:three_prime_UTR 25.0%
! ATTCCCATCAAGATATATAT+TGG + chr3_3:68792563-68792582 Msa0467480:three_prime_UTR 25.0%
! TTCCCATCAAGATATATATT+GGG + chr3_3:68792564-68792583 Msa0467480:three_prime_UTR 25.0%
! AATGAAAACAGGTAATATTG+GGG - chr3_3:68792758-68792777 None:intergenic 25.0%
! AGTGTAGAAAAAGAAAATCA+TGG + chr3_3:68792912-68792931 Msa0467480:three_prime_UTR 25.0%
! TATGCAATTTAAGCTCATTT+GGG - chr3_3:68793050-68793069 None:intergenic 25.0%
! TTATGCAATTTAAGCTCATT+TGG - chr3_3:68793051-68793070 None:intergenic 25.0%
! AGTAACTAATAAGCTATAAG+TGG + chr3_3:68793115-68793134 Msa0467480:three_prime_UTR 25.0%
! ATTTGATACTTTAATCTGGT+TGG + chr3_3:68793196-68793215 Msa0467480:three_prime_UTR 25.0%
! TTTGATACTTTAATCTGGTT+GGG + chr3_3:68793197-68793216 Msa0467480:three_prime_UTR 25.0%
! TAATGACTTAAACTATATGG+TGG - chr3_3:68793303-68793322 None:intergenic 25.0%
! TGAAACACCCATTTATTTAA+TGG + chr3_3:68794058-68794077 Msa0467480:intron 25.0%
! ACTGTAGTTAATTAGAAAAC+TGG + chr3_3:68794169-68794188 Msa0467480:intron 25.0%
!! ACTTCCATTTCTTATTTCAA+TGG + chr3_3:68794209-68794228 Msa0467480:intron 25.0%
!! CTTCCATTTCTTATTTCAAT+GGG + chr3_3:68794210-68794229 Msa0467480:intron 25.0%
! CCTGCATAATAATGAAAATA+TGG - chr3_3:68794382-68794401 None:intergenic 25.0%
!! CCATATTTTCATTATTATGC+AGG + chr3_3:68794379-68794398 Msa0467480:intron 25.0%
!!! TATATTATTTTTTTCGCTCC+AGG + chr3_3:68794704-68794723 Msa0467480:three_prime_UTR 25.0%
!! ACAAATGAAACATTTAGAAC+TGG - chr3_3:68795045-68795064 None:intergenic 25.0%
! TATCGTTACAAAGACATTAT+TGG + chr3_3:68795173-68795192 Msa0467480:three_prime_UTR 25.0%
! AAACATCTCTTCAATTGAAA+AGG - chr3_3:68795366-68795385 None:intergenic 25.0%
! CTTACTAAATTAACTACTCT+TGG - chr3_3:68795413-68795432 None:intergenic 25.0%
! GTAGTTAATTTAGTAAGAGA+TGG + chr3_3:68795416-68795435 Msa0467480:three_prime_UTR 25.0%
!!! TTTTTTGTTTTTGAAGACCA+GGG + chr3_3:68795537-68795556 Msa0467480:three_prime_UTR 25.0%
!! AGTTTTAACAGCTGAATTCT+TGG - chr3_3:68791420-68791439 None:intergenic 30.0%
GGCAATAAACATATGAATCT+TGG - chr3_3:68791498-68791517 None:intergenic 30.0%
GAGAAACATAACTATCTAAC+TGG + chr3_3:68791612-68791631 Msa0467480:intron 30.0%
TGTTCAATTATTGCCTACTT+TGG + chr3_3:68791676-68791695 Msa0467480:intron 30.0%
! AACAATCTAGAATCCAAAGT+AGG - chr3_3:68791692-68791711 None:intergenic 30.0%
ACAAATGTGCTTATGATAAC+TGG + chr3_3:68792002-68792021 Msa0467480:CDS 30.0%
TAAAGGAAGCAAAGAAAGAT+AGG - chr3_3:68792077-68792096 None:intergenic 30.0%
ACATTTACGAGGAGATTTAA+AGG - chr3_3:68792094-68792113 None:intergenic 30.0%
! TGAGTGGATAAAATTTTCTG+TGG + chr3_3:68792138-68792157 Msa0467480:three_prime_UTR 30.0%
GACCTAGTTTAATAGTATGT+AGG + chr3_3:68792165-68792184 Msa0467480:three_prime_UTR 30.0%
ATAGTATGTAGGAATGTATC+TGG + chr3_3:68792176-68792195 Msa0467480:three_prime_UTR 30.0%
CACCATTTAGAAGTTTAAAG+AGG + chr3_3:68792216-68792235 Msa0467480:three_prime_UTR 30.0%
TGATAGCATATATTGTTAGG+AGG + chr3_3:68792368-68792387 Msa0467480:three_prime_UTR 30.0%
TCCCATCAAGATATATATTG+GGG + chr3_3:68792565-68792584 Msa0467480:three_prime_UTR 30.0%
CTGCCTAATTTAGTGATTTA+TGG + chr3_3:68792620-68792639 Msa0467480:three_prime_UTR 30.0%
CTGTCTCTCTTACATATAAA+AGG + chr3_3:68792674-68792693 Msa0467480:three_prime_UTR 30.0%
AGAAGACAGAGAAATGTAAA+GGG - chr3_3:68792889-68792908 None:intergenic 30.0%
AAGAAGACAGAGAAATGTAA+AGG - chr3_3:68792890-68792909 None:intergenic 30.0%
AAATCATGGAAAGAAATGTC+AGG + chr3_3:68792926-68792945 Msa0467480:three_prime_UTR 30.0%
ATAGCTTATTAGTTACTGAC+TGG - chr3_3:68793112-68793131 None:intergenic 30.0%
TTTAATCTGGTTGGGAATAT+AGG + chr3_3:68793205-68793224 Msa0467480:three_prime_UTR 30.0%
!!! TTTTCTACTCTCTAAAGTAG+AGG - chr3_3:68793240-68793259 None:intergenic 30.0%
AATCACCATGTACTCAAATT+GGG + chr3_3:68793364-68793383 Msa0467480:three_prime_UTR 30.0%
GTAACCATTATCATAGTGAA+AGG + chr3_3:68793436-68793455 Msa0467480:three_prime_UTR 30.0%
! TTAGCCTTTCACTATGATAA+TGG - chr3_3:68793443-68793462 None:intergenic 30.0%
!! ATTTTAATAAAGCAGGTTCC+TGG + chr3_3:68793557-68793576 Msa0467480:three_prime_UTR 30.0%
! TTTTAATAAAGCAGGTTCCT+GGG + chr3_3:68793558-68793577 Msa0467480:three_prime_UTR 30.0%
AAGAAAAGTTTATCACCTTC+AGG - chr3_3:68793676-68793695 None:intergenic 30.0%
AATGCTTTCCTTATGCTAAA+AGG + chr3_3:68793754-68793773 Msa0467480:intron 30.0%
GTATCTCTTATGTACAGAAT+AGG + chr3_3:68793789-68793808 Msa0467480:intron 30.0%
TAGGAAAGATGAAGCTATTT+CGG + chr3_3:68793808-68793827 Msa0467480:three_prime_UTR 30.0%
GCGTTCATAGTTATAGATAT+TGG - chr3_3:68793840-68793859 None:intergenic 30.0%
ACGAAAGAACATTAGATACA+TGG + chr3_3:68793913-68793932 Msa0467480:three_prime_UTR 30.0%
!!! ATCAGAACTGCTTTTTTTGT+TGG + chr3_3:68793956-68793975 Msa0467480:three_prime_UTR 30.0%
!!! TCAGAACTGCTTTTTTTGTT+GGG + chr3_3:68793957-68793976 Msa0467480:three_prime_UTR 30.0%
AATAAATGGGTGTTTCAGAT+TGG - chr3_3:68794055-68794074 None:intergenic 30.0%
!!! GATTTTAGGGCTATACTTTT+TGG + chr3_3:68794115-68794134 Msa0467480:intron 30.0%
TAGTTAATTAGAAAACTGGC+AGG + chr3_3:68794173-68794192 Msa0467480:intron 30.0%
AGTTAATTAGAAAACTGGCA+GGG + chr3_3:68794174-68794193 Msa0467480:intron 30.0%
ATGCCCATTGAAATAAGAAA+TGG - chr3_3:68794216-68794235 None:intergenic 30.0%
ATTTATCTAATTGACCATGC+AGG + chr3_3:68794545-68794564 Msa0467480:three_prime_UTR 30.0%
TTTATCTAATTGACCATGCA+GGG + chr3_3:68794546-68794565 Msa0467480:three_prime_UTR 30.0%
TGGTATGTATGATTGATATG+TGG + chr3_3:68795193-68795212 Msa0467480:three_prime_UTR 30.0%
GGTATGTATGATTGATATGT+GGG + chr3_3:68795194-68795213 Msa0467480:three_prime_UTR 30.0%
! TTGATCTTCCATAGCTTTTT+GGG + chr3_3:68795220-68795239 Msa0467480:three_prime_UTR 30.0%
AAAATTCTCCCAAAAAGCTA+TGG - chr3_3:68795231-68795250 None:intergenic 30.0%
AAAAGGTTATCAACCAAAGT+CGG - chr3_3:68795349-68795368 None:intergenic 30.0%
!! CTACTTTTGTGATGTATGTA+CGG + chr3_3:68795488-68795507 Msa0467480:three_prime_UTR 30.0%
!!! GTTTTTTGTTTTTGAAGACC+AGG + chr3_3:68795536-68795555 Msa0467480:three_prime_UTR 30.0%
TCCGCATTATTCAATGTTGT+TGG + chr3_3:68791328-68791347 Msa0467480:intron 35.0%
GCCAACAACATTGAATAATG+CGG - chr3_3:68791332-68791351 None:intergenic 35.0%
CTGTTAAAACTTGAGTGCAT+CGG + chr3_3:68791429-68791448 Msa0467480:intron 35.0%
! TATTGCCTTTTCTGTTTTCC+TGG + chr3_3:68791511-68791530 Msa0467480:intron 35.0%
AAGAACCAGGAAAACAGAAA+AGG - chr3_3:68791519-68791538 None:intergenic 35.0%
! TTTTACATCCTTACGTTTGC+AGG + chr3_3:68791710-68791729 Msa0467480:intron 35.0%
AATAGTTTCCTGCAAACGTA+AGG - chr3_3:68791721-68791740 None:intergenic 35.0%
AACTATTGTAAGCATGGCAT+TGG + chr3_3:68791734-68791753 Msa0467480:CDS 35.0%
TACTCTTGGATCAGTTGTTA+TGG + chr3_3:68791845-68791864 Msa0467480:CDS 35.0%
AGTATGAGAACATATGCATC+TGG - chr3_3:68791879-68791898 None:intergenic 35.0%
GATGCATATGTTCTCATACT+TGG + chr3_3:68791879-68791898 Msa0467480:CDS 35.0%
GAGGATTCTGCAATATATAC+AGG - chr3_3:68791951-68791970 None:intergenic 35.0%
AATCCTCACCATCAGAAATA+AGG + chr3_3:68791964-68791983 Msa0467480:CDS 35.0%
ATCCTCACCATCAGAAATAA+GGG + chr3_3:68791965-68791984 Msa0467480:CDS 35.0%
AATGTGCTTATGATAACTGG+TGG + chr3_3:68792005-68792024 Msa0467480:CDS 35.0%
GTAAATGTGCTTCTGATACT+TGG + chr3_3:68792106-68792125 Msa0467480:three_prime_UTR 35.0%
CTCTATTTCGACTTTCCAAT+AGG + chr3_3:68792246-68792265 Msa0467480:three_prime_UTR 35.0%
ACTTTCCAATAGGTCAGAAA+AGG + chr3_3:68792256-68792275 Msa0467480:three_prime_UTR 35.0%
! TTATGCCTTTTCTGACCTAT+TGG - chr3_3:68792264-68792283 None:intergenic 35.0%
ATCAAGCATTCTGTTTCAAC+AGG - chr3_3:68792434-68792453 None:intergenic 35.0%
GCCCCAATATATATCTTGAT+GGG - chr3_3:68792569-68792588 None:intergenic 35.0%
TGCCCCAATATATATCTTGA+TGG - chr3_3:68792570-68792589 None:intergenic 35.0%
!! TAGAAGCTTTAGACTAGAGA+GGG - chr3_3:68792725-68792744 None:intergenic 35.0%
!! ATAGAAGCTTTAGACTAGAG+AGG - chr3_3:68792726-68792745 None:intergenic 35.0%
CATGCTGTGTTAATGAAAAC+AGG - chr3_3:68792769-68792788 None:intergenic 35.0%
TAAATCAGATTCGCAAAGGA+TGG - chr3_3:68792819-68792838 None:intergenic 35.0%
TCAATTGCAGAGAAAACTAC+AGG - chr3_3:68792851-68792870 None:intergenic 35.0%
! GTTTAATGGATGTTAGACCA+TGG + chr3_3:68792989-68793008 Msa0467480:three_prime_UTR 35.0%
! TATAAGTGGCATGTTGTTTG+TGG + chr3_3:68793129-68793148 Msa0467480:three_prime_UTR 35.0%
! ATAAGTGGCATGTTGTTTGT+GGG + chr3_3:68793130-68793149 Msa0467480:three_prime_UTR 35.0%
GAATCACCATGTACTCAAAT+TGG + chr3_3:68793363-68793382 Msa0467480:three_prime_UTR 35.0%
GTTTACCCAATTTGAGTACA+TGG - chr3_3:68793372-68793391 None:intergenic 35.0%
! TTGTATTGCTGTTACCTGTT+AGG + chr3_3:68793498-68793517 Msa0467480:three_prime_UTR 35.0%
ACACAAAACTGAATAACAGC+TGG - chr3_3:68793617-68793636 None:intergenic 35.0%
!! TAGCATAAGGAAAGCATTCA+AGG - chr3_3:68793752-68793771 None:intergenic 35.0%
! GTAAGACACCTTTTAGCATA+AGG - chr3_3:68793765-68793784 None:intergenic 35.0%
! GGTAATTGACTTCATCTTCT+AGG - chr3_3:68793862-68793881 None:intergenic 35.0%
!!! CAGAACTGCTTTTTTTGTTG+GGG + chr3_3:68793958-68793977 Msa0467480:three_prime_UTR 35.0%
TAGAAGAAGAGCTAACTGAT+TGG - chr3_3:68794480-68794499 None:intergenic 35.0%
ACTCCACAAATACAACCTAT+GGG + chr3_3:68794654-68794673 Msa0467480:three_prime_UTR 35.0%
AATAATTGCTAACCACCCAT+AGG - chr3_3:68794672-68794691 None:intergenic 35.0%
TATGGGTGGTTAGCAATTAT+TGG + chr3_3:68794671-68794690 Msa0467480:three_prime_UTR 35.0%
ATGGGTGGTTAGCAATTATT+GGG + chr3_3:68794672-68794691 Msa0467480:three_prime_UTR 35.0%
!!! TATTTTTTTCGCTCCAGGAA+TGG + chr3_3:68794709-68794728 Msa0467480:three_prime_UTR 35.0%
!!! ATTTTTTTCGCTCCAGGAAT+GGG + chr3_3:68794710-68794729 Msa0467480:three_prime_UTR 35.0%
CTTTCAATTTCTGATTCCGT+TGG + chr3_3:68794848-68794867 Msa0467480:three_prime_UTR 35.0%
!! GATTCTTGGTGTTATATGTG+TGG + chr3_3:68794889-68794908 Msa0467480:three_prime_UTR 35.0%
AGGATTGACATTTGAAGAAG+TGG + chr3_3:68794952-68794971 Msa0467480:three_prime_UTR 35.0%
TGAGTCATAATCTTTACCCT+GGG - chr3_3:68794999-68795018 None:intergenic 35.0%
TTTGTGAGCTGCAGTATTAT+TGG + chr3_3:68795060-68795079 Msa0467480:three_prime_UTR 35.0%
! CTTGATCTTCCATAGCTTTT+TGG + chr3_3:68795219-68795238 Msa0467480:three_prime_UTR 35.0%
TTAAGCGAAATAATGGTTCG+TGG + chr3_3:68795290-68795309 Msa0467480:three_prime_UTR 35.0%
AAAGGTTATCAACCAAAGTC+GGG - chr3_3:68795348-68795367 None:intergenic 35.0%
TAAGAGATGGAATGTGTTCT+TGG + chr3_3:68795429-68795448 Msa0467480:three_prime_UTR 35.0%
CAAAGAAAATATCACTACCC+TGG - chr3_3:68795557-68795576 None:intergenic 35.0%
TTGGCTTCAGAATGCATAAG+AGG + chr3_3:68791347-68791366 Msa0467480:intron 40.0%
TGGCTTCAGAATGCATAAGA+GGG + chr3_3:68791348-68791367 Msa0467480:intron 40.0%
TTAAAACTTGAGTGCATCGG+TGG + chr3_3:68791432-68791451 Msa0467480:intron 40.0%
ATGAAAAGGACAGAAGAACC+AGG - chr3_3:68791532-68791551 None:intergenic 40.0%
TTGTATACTAATGTGGGGGT+TGG + chr3_3:68791555-68791574 Msa0467480:intron 40.0%
TGTATACTAATGTGGGGGTT+GGG + chr3_3:68791556-68791575 Msa0467480:intron 40.0%
GCAGGAAACTATTGTAAGCA+TGG + chr3_3:68791728-68791747 Msa0467480:intron 40.0%
!! ATTGTAAGCATGGCATTGGT+TGG + chr3_3:68791738-68791757 Msa0467480:CDS 40.0%
!! GCATTGGTTGGTGCAATTAT+TGG + chr3_3:68791750-68791769 Msa0467480:CDS 40.0%
! GGCTGGATTAATGATGCTTT+TGG + chr3_3:68791786-68791805 Msa0467480:CDS 40.0%
! TGATGCTTTTGGACGTAAGA+AGG + chr3_3:68791797-68791816 Msa0467480:CDS 40.0%
GCTGATGTTGTCTTTACTCT+TGG + chr3_3:68791831-68791850 Msa0467480:CDS 40.0%
TCCTCACCATCAGAAATAAG+GGG + chr3_3:68791966-68791985 Msa0467480:CDS 40.0%
!! AACGAACCCCTTATTTCTGA+TGG - chr3_3:68791975-68791994 None:intergenic 40.0%
AAGAAAGATAGGCCTAACCT+CGG - chr3_3:68792066-68792085 None:intergenic 40.0%
! GTATCAGAAGCACATTTACG+AGG - chr3_3:68792105-68792124 None:intergenic 40.0%
! TACTTGGTAGTCAACTTGAG+TGG + chr3_3:68792122-68792141 Msa0467480:three_prime_UTR 40.0%
!! ATTCCGTTTTTGCAGCTTGA+AGG + chr3_3:68792534-68792553 Msa0467480:three_prime_UTR 40.0%
!! TTCCGTTTTTGCAGCTTGAA+GGG + chr3_3:68792535-68792554 Msa0467480:three_prime_UTR 40.0%
!! AGAAGCTTTAGACTAGAGAG+GGG - chr3_3:68792724-68792743 None:intergenic 40.0%
AGATTCGCAAAGGATGGTTT+GGG - chr3_3:68792813-68792832 None:intergenic 40.0%
GTGGTAAATCAGATTCGCAA+AGG - chr3_3:68792823-68792842 None:intergenic 40.0%
GAGAAAACTACAGGAAATGG+TGG - chr3_3:68792842-68792861 None:intergenic 40.0%
GCAGAGAAAACTACAGGAAA+TGG - chr3_3:68792845-68792864 None:intergenic 40.0%
CAGTAGAAGAGATAACACCA+TGG - chr3_3:68793009-68793028 None:intergenic 40.0%
! GCTTATTAGTTACTGACTGG+TGG - chr3_3:68793109-68793128 None:intergenic 40.0%
!! CTACTCTCTAAAGTAGAGGT+TGG - chr3_3:68793236-68793255 None:intergenic 40.0%
!! AGGAAAGCATTCAAGGATTG+AGG - chr3_3:68793745-68793764 None:intergenic 40.0%
!! TGCTAAAAGGTGTCTTACAC+TGG + chr3_3:68793767-68793786 Msa0467480:intron 40.0%
! CATGGATGTTTTCCGATCAA+CGG + chr3_3:68793931-68793950 Msa0467480:three_prime_UTR 40.0%
! CAGTTCTGATTTCCGTTGAT+CGG - chr3_3:68793946-68793965 None:intergenic 40.0%
TGTCTCAATAACCTGAAGTC+CGG - chr3_3:68793984-68794003 None:intergenic 40.0%
CAGCCATTTGAATGATTGTG+GGG - chr3_3:68794448-68794467 None:intergenic 40.0%
CCAGCCATTTGAATGATTGT+GGG - chr3_3:68794449-68794468 None:intergenic 40.0%
CCACAATCATTCAAATGGCT+GGG + chr3_3:68794447-68794466 Msa0467480:three_prime_UTR 40.0%
TTGTGGAGTCAGATGATTGA+AGG - chr3_3:68794643-68794662 None:intergenic 40.0%
GACTCCACAAATACAACCTA+TGG + chr3_3:68794653-68794672 Msa0467480:three_prime_UTR 40.0%
AATGTCAATCCTTTCGTCTC+TGG - chr3_3:68794944-68794963 None:intergenic 40.0%
GGATCTCTTCTTCCATATGA+GGG - chr3_3:68794978-68794997 None:intergenic 40.0%
ATATGGAAGAAGAGATCCCA+GGG + chr3_3:68794980-68794999 Msa0467480:three_prime_UTR 40.0%
GTGAGTCATAATCTTTACCC+TGG - chr3_3:68795000-68795019 None:intergenic 40.0%
AGTTGTTAGCTGCCACATTA+TGG + chr3_3:68795115-68795134 Msa0467480:three_prime_UTR 40.0%
GTTGTTAGCTGCCACATTAT+GGG + chr3_3:68795116-68795135 Msa0467480:three_prime_UTR 40.0%
ACAACCATCATCCCATAATG+TGG - chr3_3:68795130-68795149 None:intergenic 40.0%
TTAACCATGTATCCCGACTT+TGG + chr3_3:68795333-68795352 Msa0467480:three_prime_UTR 40.0%
! TGTTTGCTACTTCCGAAGTT+AGG + chr3_3:68795381-68795400 Msa0467480:three_prime_UTR 40.0%
TCTTGGCAGATTCCTAACTT+CGG - chr3_3:68795396-68795415 None:intergenic 40.0%
GGAATGTGTTCTTGGCAAAT+AGG + chr3_3:68795437-68795456 Msa0467480:three_prime_UTR 40.0%
! TACTGTTATTTGCTCCGTGC+AGG + chr3_3:68791224-68791243 Msa0467480:intron 45.0%
! TCCGTGCAGGTGTTATATCA+GGG + chr3_3:68791237-68791256 Msa0467480:intron 45.0%
TCGGAAAAGTAGCTTCCTTC+AGG + chr3_3:68791295-68791314 Msa0467480:intron 45.0%
GTATACTAATGTGGGGGTTG+GGG + chr3_3:68791557-68791576 Msa0467480:intron 45.0%
GCAATTATTGGAGCAGCAAC+AGG + chr3_3:68791762-68791781 Msa0467480:CDS 45.0%
ATTATTGGAGCAGCAACAGG+TGG + chr3_3:68791765-68791784 Msa0467480:CDS 45.0%
GACAACATCAGCACTAAGTG+TGG - chr3_3:68791823-68791842 None:intergenic 45.0%
GAGAACATATGCATCTGGTG+CGG - chr3_3:68791874-68791893 None:intergenic 45.0%
ATACTTGGCCGTCTTCTAGT+TGG + chr3_3:68791894-68791913 Msa0467480:CDS 45.0%
CACCAATGCCAACTAGAAGA+CGG - chr3_3:68791905-68791924 None:intergenic 45.0%
!! TCTTCTAGTTGGCATTGGTG+TGG + chr3_3:68791905-68791924 Msa0467480:CDS 45.0%
!! CTTCTAGTTGGCATTGGTGT+GGG + chr3_3:68791906-68791925 Msa0467480:CDS 45.0%
!! ACCCCTTATTTCTGATGGTG+AGG - chr3_3:68791970-68791989 None:intergenic 45.0%
CGGTAAAGGCAAGATTTACG+AGG - chr3_3:68792046-68792065 None:intergenic 45.0%
CGTAAATCTTGCCTTTACCG+AGG + chr3_3:68792046-68792065 Msa0467480:CDS 45.0%
ATCTTGCCTTTACCGAGGTT+AGG + chr3_3:68792051-68792070 Msa0467480:CDS 45.0%
!! TCCGTTTTTGCAGCTTGAAG+GGG + chr3_3:68792536-68792555 Msa0467480:three_prime_UTR 45.0%
CAGATTCGCAAAGGATGGTT+TGG - chr3_3:68792814-68792833 None:intergenic 45.0%
!!! ACTGCTTTTTTTGTTGGGGC+CGG + chr3_3:68793962-68793981 Msa0467480:three_prime_UTR 45.0%
! TCCACTTTCTCATGACTTGC+TGG + chr3_3:68794028-68794047 Msa0467480:intron 45.0%
!! CCACTTTCTCATGACTTGCT+GGG + chr3_3:68794029-68794048 Msa0467480:intron 45.0%
CAGCCCCACAATCATTCAAA+TGG + chr3_3:68794442-68794461 Msa0467480:three_prime_UTR 45.0%
CCCACAATCATTCAAATGGC+TGG + chr3_3:68794446-68794465 Msa0467480:three_prime_UTR 45.0%
CCCAGCCATTTGAATGATTG+TGG - chr3_3:68794450-68794469 None:intergenic 45.0%
CTTCTATCTCTCATCGTTGC+TGG + chr3_3:68794494-68794513 Msa0467480:three_prime_UTR 45.0%
AACGCTGCTGGAACAATTCT+TGG + chr3_3:68794521-68794540 Msa0467480:three_prime_UTR 45.0%
CCACCCATAGGTTGTATTTG+TGG - chr3_3:68794660-68794679 None:intergenic 45.0%
CCACAAATACAACCTATGGG+TGG + chr3_3:68794657-68794676 Msa0467480:three_prime_UTR 45.0%
ATTTCCGAGTTCACAGTCCA+TGG - chr3_3:68794743-68794762 None:intergenic 45.0%
ATCTATCCTGAAGAGTTCCG+AGG + chr3_3:68794761-68794780 Msa0467480:three_prime_UTR 45.0%
AAGAGTTCCGAGGTGTATGT+GGG + chr3_3:68794771-68794790 Msa0467480:three_prime_UTR 45.0%
GCATGTCAGCTACTGTAAAC+TGG + chr3_3:68794795-68794814 Msa0467480:three_prime_UTR 45.0%
! ATTTCTGATTCCGTTGGCCT+TGG + chr3_3:68794854-68794873 Msa0467480:three_prime_UTR 45.0%
GAATCACGAAACTACCACCA+AGG - chr3_3:68794874-68794893 None:intergenic 45.0%
GGTGGTAGTTTCGTGATTCT+TGG + chr3_3:68794875-68794894 Msa0467480:three_prime_UTR 45.0%
TTGTTTGTGCCAGAGACGAA+AGG + chr3_3:68794932-68794951 Msa0467480:three_prime_UTR 45.0%
TTGAAGAAGTGGCCCTCATA+TGG + chr3_3:68794963-68794982 Msa0467480:three_prime_UTR 45.0%
GGGATCTCTTCTTCCATATG+AGG - chr3_3:68794979-68794998 None:intergenic 45.0%
CATATGGAAGAAGAGATCCC+AGG + chr3_3:68794979-68794998 Msa0467480:three_prime_UTR 45.0%
TCACAGAACCTTCTTGAGAG+AGG + chr3_3:68795016-68795035 Msa0467480:three_prime_UTR 45.0%
AGTATTATTGGACGCGAGCT+AGG + chr3_3:68795072-68795091 Msa0467480:three_prime_UTR 45.0%
GTGGCAGCTAACAACTCAAA+TGG - chr3_3:68795111-68795130 None:intergenic 45.0%
GCGAAATAATGGTTCGTGGT+TGG + chr3_3:68795294-68795313 Msa0467480:three_prime_UTR 45.0%
GGATACATGGTTAATCGAGC+TGG - chr3_3:68795327-68795346 None:intergenic 45.0%
TCAACCAAAGTCGGGATACA+TGG - chr3_3:68795340-68795359 None:intergenic 45.0%
! CTCCGTGCAGGTGTTATATC+AGG + chr3_3:68791236-68791255 Msa0467480:intron 50.0%
CCCCTGATATAACACCTGCA+CGG - chr3_3:68791241-68791260 None:intergenic 50.0%
! CCGTGCAGGTGTTATATCAG+GGG + chr3_3:68791238-68791257 Msa0467480:intron 50.0%
GCGGAAAAGCTTGTACCTGA+AGG - chr3_3:68791313-68791332 None:intergenic 50.0%
GATAGGCCTAACCTCGGTAA+AGG - chr3_3:68792060-68792079 None:intergenic 50.0%
GCCCCTTCAAGCTGCAAAAA+CGG - chr3_3:68792540-68792559 None:intergenic 50.0%
TATTGGGGCAGCATCACTGA+AGG + chr3_3:68792580-68792599 Msa0467480:three_prime_UTR 50.0%
TAAAGCAGGTTCCTGGGACA+TGG + chr3_3:68793564-68793583 Msa0467480:three_prime_UTR 50.0%
! TTTTCCTGCCTGAGTCTCCA+AGG + chr3_3:68793642-68793661 Msa0467480:three_prime_UTR 50.0%
AAAAGCCACCTTGGAGACTC+AGG - chr3_3:68793653-68793672 None:intergenic 50.0%
! TCCAAGGTGGCTTTTCCTGA+AGG + chr3_3:68793658-68793677 Msa0467480:three_prime_UTR 50.0%
ACCTTCAGGAAAAGCCACCT+TGG - chr3_3:68793662-68793681 None:intergenic 50.0%
CTTGCTCAGAAACAGCTGTG+AGG - chr3_3:68793883-68793902 None:intergenic 50.0%
CCCAGCAAGTCATGAGAAAG+TGG - chr3_3:68794032-68794051 None:intergenic 50.0%
! CAGGCTTTTCAGCAGTTCAC+TGG + chr3_3:68794398-68794417 Msa0467480:intron 50.0%
TAATTGACCATGCAGGGCGA+AGG + chr3_3:68794552-68794571 Msa0467480:three_prime_UTR 50.0%
TGCACCTGACAAGCTTGAGA+GGG - chr3_3:68794585-68794604 None:intergenic 50.0%
TTGCACCTGACAAGCTTGAG+AGG - chr3_3:68794586-68794605 None:intergenic 50.0%
GAAGGTAAGACCCTGCAGAA+AGG - chr3_3:68794625-68794644 None:intergenic 50.0%
CATACACCTCGGAACTCTTC+AGG - chr3_3:68794770-68794789 None:intergenic 50.0%
GAAGAGTTCCGAGGTGTATG+TGG + chr3_3:68794770-68794789 Msa0467480:three_prime_UTR 50.0%
AGAGTTCCGAGGTGTATGTG+GGG + chr3_3:68794772-68794791 Msa0467480:three_prime_UTR 50.0%
GAAACTACCACCAAGGCCAA+CGG - chr3_3:68794867-68794886 None:intergenic 50.0%
! ACTGGCTTCCTCTCTCAAGA+AGG - chr3_3:68795027-68795046 None:intergenic 50.0%
GCTGCCACATTATGGGATGA+TGG + chr3_3:68795123-68795142 Msa0467480:three_prime_UTR 50.0%
TAATGTGGGGGTTGGGGTGT+AGG + chr3_3:68791563-68791582 Msa0467480:intron 55.0%
! GGCCGTCTTCTAGTTGGCAT+TGG + chr3_3:68791900-68791919 Msa0467480:CDS 55.0%
AGGTTCCTGGGACATGGAGA+TGG + chr3_3:68793570-68793589 Msa0467480:three_prime_UTR 55.0%
AGCATCCATCTCCATGTCCC+AGG - chr3_3:68793578-68793597 None:intergenic 55.0%
TGGGACATGGAGATGGATGC+TGG + chr3_3:68793577-68793596 Msa0467480:three_prime_UTR 55.0%
GGGACATGGAGATGGATGCT+GGG + chr3_3:68793578-68793597 Msa0467480:three_prime_UTR 55.0%
AGATGGATGCTGGGAGTTGC+TGG + chr3_3:68793587-68793606 Msa0467480:three_prime_UTR 55.0%
! TTTTGTTGGGGCCGGACTTC+AGG + chr3_3:68793970-68793989 Msa0467480:three_prime_UTR 55.0%
TTGGCCCTCTCAAGCTTGTC+AGG + chr3_3:68794578-68794597 Msa0467480:three_prime_UTR 55.0%
CGCTGGCAATCCTTTCTGCA+GGG + chr3_3:68794612-68794631 Msa0467480:three_prime_UTR 55.0%
TTTCGCTCCAGGAATGGGAC+CGG + chr3_3:68794715-68794734 Msa0467480:three_prime_UTR 55.0%
GAGTTCACAGTCCATGGCAC+CGG - chr3_3:68794737-68794756 None:intergenic 55.0%
! GGTGCCATGGACTGTGAACT+CGG + chr3_3:68794736-68794755 Msa0467480:three_prime_UTR 55.0%
GAGTTCCGAGGTGTATGTGG+GGG + chr3_3:68794773-68794792 Msa0467480:three_prime_UTR 55.0%
ACATGCCCCCACATACACCT+CGG - chr3_3:68794781-68794800 None:intergenic 55.0%
!! TCTGATTCCGTTGGCCTTGG+TGG + chr3_3:68794857-68794876 Msa0467480:three_prime_UTR 55.0%
TTGGAGCAGCAACAGGTGGC+TGG + chr3_3:68791769-68791788 Msa0467480:CDS 60.0%
GACTAGAGAGGGGACTGCAC+TGG - chr3_3:68792714-68792733 None:intergenic 60.0%
TCCTGCCTGAGTCTCCAAGG+TGG + chr3_3:68793645-68793664 Msa0467480:three_prime_UTR 60.0%
GTTGCTGGCATGAACGCTGC+TGG + chr3_3:68794509-68794528 Msa0467480:three_prime_UTR 60.0%
CCAACTTCCTTCGCCCTGCA+TGG - chr3_3:68794562-68794581 None:intergenic 60.0%
CCATGCAGGGCGAAGGAAGT+TGG + chr3_3:68794559-68794578 Msa0467480:three_prime_UTR 60.0%
GTCAGGTGCAACTGTAGCGC+TGG + chr3_3:68794595-68794614 Msa0467480:three_prime_UTR 60.0%
! GCGCTGGCAATCCTTTCTGC+AGG + chr3_3:68794611-68794630 Msa0467480:three_prime_UTR 60.0%
GGGGGTTGGGGTGTAGGTGT+TGG + chr3_3:68791569-68791588 Msa0467480:intron 65.0%
GCCACCTTGGAGACTCAGGC+AGG - chr3_3:68793649-68793668 None:intergenic 65.0%
!! CATGGCACCGGTCCCATTCC+TGG - chr3_3:68794725-68794744 None:intergenic 65.0%
! CAGGAATGGGACCGGTGCCA+TGG + chr3_3:68794723-68794742 Msa0467480:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 68791149 68795576 68791149 ID=Msa0467480;Name=Msa0467480
chr3_3 mRNA 68791149 68795576 68791149 ID=Msa0467480-mRNA-1;Parent=Msa0467480;Name=Msa0467480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.6|0.6|1|0.8|5|2944|125
chr3_3 exon 68791149 68791154 68791149 ID=Msa0467480-mRNA-1:exon:16075;Parent=Msa0467480-mRNA-1
chr3_3 exon 68791479 68791484 68791479 ID=Msa0467480-mRNA-1:exon:16076;Parent=Msa0467480-mRNA-1
chr3_3 exon 68791732 68793679 68791732 ID=Msa0467480-mRNA-1:exon:16077;Parent=Msa0467480-mRNA-1
chr3_3 exon 68793806 68793991 68793806 ID=Msa0467480-mRNA-1:exon:16078;Parent=Msa0467480-mRNA-1
chr3_3 exon 68794401 68795576 68794401 ID=Msa0467480-mRNA-1:exon:16079;Parent=Msa0467480-mRNA-1
chr3_3 CDS 68791149 68791154 68791149 ID=Msa0467480-mRNA-1:cds;Parent=Msa0467480-mRNA-1
chr3_3 CDS 68791479 68791484 68791479 ID=Msa0467480-mRNA-1:cds;Parent=Msa0467480-mRNA-1
chr3_3 CDS 68791732 68792097 68791732 ID=Msa0467480-mRNA-1:cds;Parent=Msa0467480-mRNA-1
chr3_3 three_prime_UTR 68792098 68793679 68792098 ID=Msa0467480-mRNA-1:three_prime_utr;Parent=Msa0467480-mRNA-1
chr3_3 three_prime_UTR 68793806 68793991 68793806 ID=Msa0467480-mRNA-1:three_prime_utr;Parent=Msa0467480-mRNA-1
chr3_3 three_prime_UTR 68794401 68795576 68794401 ID=Msa0467480-mRNA-1:three_prime_utr;Parent=Msa0467480-mRNA-1
Gene Sequence

>Msa0467480

ATGATATATGCGGAAACTATTGTAAGCATGGCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGGCTGGATTAATGATGCTTTTGGACGTAAGAAGGCCACACTTAGTGCTGATGTTGTCTTTACTCTTGGATCAGTTGTTATGGCTGCCGCACCAGATGCATATGTTCTCATACTTGGCCGTCTTCTAGTTGGCATTGGTGTGGGCGTAGCTTCTGTCACTGCTCCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGTTCGTTAGTTAGCACAAATGTGCTTATGATAACTGGTGGACAGTTTCTTTCTTACCTCGTAAATCTTGCCTTTACCGAGGTTAGGCCTATCTTTCTTTGCTTCCTTTAA
Protein sequence

>Msa0467480

MIYAETIVSMALVGAIIGAATGGWINDAFGRKKATLSADVVFTLGSVVMAAAPDAYVLILGRLLVGIGVGVASVTAPVYIAESSPSEIRGSLVSTNVLMITGGQFLSYLVNLAFTEVRPIFLCFL*