AlfalfaGEDB | Msa0467480

M. sativa cultivar zhongmu-4 / Msa0467480

KEGG: K08150
GO: GO:0000325 GO:0003674 GO:0005215 GO:0005365 GO:0005366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901618 GO:1902600
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467480	RHN69157.1	97.368	114	3	0	5	118	71	184	1.72e-68	214

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467480	sp\|Q8VZR6\|INT1_ARATH	84.956	113	17	0	5	117	74	186	2.69e-45	156

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467480	A0A396J1R6	97.368	114	3	0	5	118	71	184	8.20e-69	214

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008330	Msa0467480	0.810784	9.701252e-51	-8.615850e-47
Msa0026670	Msa0467480	0.841296	5.178001e-58	-8.615850e-47
Msa0035090	Msa0467480	0.801069	1.071516e-48	-8.615850e-47
Msa0039780	Msa0467480	0.824749	6.818610e-54	-8.615850e-47
Msa0042130	Msa0467480	0.805156	1.529525e-49	-8.615850e-47
Msa0046860	Msa0467480	0.821632	3.641141e-53	-8.615850e-47
Msa0057260	Msa0467480	0.820931	5.284645e-53	-8.615850e-47
Msa0057270	Msa0467480	0.817663	2.934735e-52	-8.615850e-47
Msa0083570	Msa0467480	0.804667	1.935143e-49	-8.615850e-47
Msa0087130	Msa0467480	0.806773	6.990333e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467480	MtrunA17_Chr7g0214451	81.416	113	21	5	117	76	188	1.66e-51	169
Msa0467480	MtrunA17_Chr1g0213631	78.448	116	25	2	117	25	140	7.15e-49	162
Msa0467480	MtrunA17_Chr1g0213611	78.761	113	24	5	117	121	233	1.61e-48	162
Msa0467480	MtrunA17_Chr2g0303731	63.393	112	41	5	116	69	180	1.96e-42	146
Msa0467480	MtrunA17_Chr8g0376611	61.818	110	42	7	116	4	113	3.12e-42	145
Msa0467480	MtrunA17_Chr2g0290181	69.643	112	34	5	116	70	181	8.20e-41	142
Msa0467480	MtrunA17_Chr8g0376631	66.372	113	38	5	117	69	181	3.27e-38	135
Msa0467480	MtrunA17_Chr2g0303701	62.500	112	42	5	116	69	180	5.46e-35	126
Msa0467480	MtrunA17_Chr8g0376601	57.522	113	48	5	117	69	181	2.23e-31	116
Msa0467480	MtrunA17_Chr5g0434231	55.435	92	41	1	92	1	92	3.24e-30	105

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467480	AT2G43330.1	84.956	113	17	5	117	74	186	2.74e-46	156
Msa0467480	AT2G35740.1	65.179	112	39	5	116	69	180	2.76e-42	146
Msa0467480	AT1G30220.1	64.602	113	40	5	117	71	183	2.19e-37	133
Msa0467480	AT4G16480.2	64.865	111	39	6	116	71	181	4.09e-36	130
Msa0467480	AT4G16480.3	64.865	111	39	6	116	71	181	4.09e-36	130
Msa0467480	AT4G16480.1	64.865	111	39	6	116	71	181	4.09e-36	130
Msa0467480	AT4G35300.4	42.157	102	59	7	108	48	149	1.94e-19	83.2
Msa0467480	AT4G35300.8	42.157	102	59	7	108	48	149	1.94e-19	83.2
Msa0467480	AT4G35300.6	42.157	102	59	7	108	48	149	1.94e-19	83.2
Msa0467480	AT4G35300.11	42.157	102	59	7	108	48	149	1.94e-19	83.2

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Find 210 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCACCTTGGAGACTC+AGG	0.507127	3_3:-68793650	None:intergenic
AAAAGGTTATCAACCAAAGT+CGG	0.519224	3_3:-68795346	None:intergenic
AAACATCTCTTCAATTGAAA+AGG	0.430989	3_3:-68795363	None:intergenic
AAAGGTTATCAACCAAAGTC+GGG	0.528916	3_3:-68795345	None:intergenic
AAATCATGGAAAGAAATGTC+AGG	0.518031	3_3:+68792926	Msa0467480:three_prime_UTR
AACGAACCCCTTATTTCTGA+TGG	0.515934	3_3:-68791972	None:intergenic
AACGCTGCTGGAACAATTCT+TGG	0.326350	3_3:+68794521	Msa0467480:three_prime_UTR
AACTATTGTAAGCATGGCAT+TGG	0.474373	3_3:+68791734	Msa0467480:CDS
AAGAAAGATAGGCCTAACCT+CGG	0.690515	3_3:-68792063	None:intergenic
AAGAAGACAGAGAAATGTAA+AGG	0.491623	3_3:-68792887	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGCAATAAACATATGAATCT+TGG	-	chr3_3:68791498-68791517	None:intergenic	30.0%
GAGAAACATAACTATCTAAC+TGG	+	chr3_3:68791612-68791631	Msa0467480:intron	30.0%
TGTTCAATTATTGCCTACTT+TGG	+	chr3_3:68791676-68791695	Msa0467480:intron	30.0%
ACAAATGTGCTTATGATAAC+TGG	+	chr3_3:68792002-68792021	Msa0467480:CDS	30.0%
TAAAGGAAGCAAAGAAAGAT+AGG	-	chr3_3:68792077-68792096	None:intergenic	30.0%
ACATTTACGAGGAGATTTAA+AGG	-	chr3_3:68792094-68792113	None:intergenic	30.0%
GACCTAGTTTAATAGTATGT+AGG	+	chr3_3:68792165-68792184	Msa0467480:three_prime_UTR	30.0%
ATAGTATGTAGGAATGTATC+TGG	+	chr3_3:68792176-68792195	Msa0467480:three_prime_UTR	30.0%
CACCATTTAGAAGTTTAAAG+AGG	+	chr3_3:68792216-68792235	Msa0467480:three_prime_UTR	30.0%
TGATAGCATATATTGTTAGG+AGG	+	chr3_3:68792368-68792387	Msa0467480:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	68791149	68795576	68791149	ID=Msa0467480;Name=Msa0467480
chr3_3	mRNA	68791149	68795576	68791149	ID=Msa0467480-mRNA-1;Parent=Msa0467480;Name=Msa0467480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.5\|0.6\|0.6\|1\|0.8\|5\|2944\|125
chr3_3	exon	68791149	68791154	68791149	ID=Msa0467480-mRNA-1:exon:16075;Parent=Msa0467480-mRNA-1
chr3_3	exon	68791479	68791484	68791479	ID=Msa0467480-mRNA-1:exon:16076;Parent=Msa0467480-mRNA-1
chr3_3	exon	68791732	68793679	68791732	ID=Msa0467480-mRNA-1:exon:16077;Parent=Msa0467480-mRNA-1
chr3_3	exon	68793806	68793991	68793806	ID=Msa0467480-mRNA-1:exon:16078;Parent=Msa0467480-mRNA-1
chr3_3	exon	68794401	68795576	68794401	ID=Msa0467480-mRNA-1:exon:16079;Parent=Msa0467480-mRNA-1
chr3_3	CDS	68791149	68791154	68791149	ID=Msa0467480-mRNA-1:cds;Parent=Msa0467480-mRNA-1
chr3_3	CDS	68791479	68791484	68791479	ID=Msa0467480-mRNA-1:cds;Parent=Msa0467480-mRNA-1
chr3_3	CDS	68791732	68792097	68791732	ID=Msa0467480-mRNA-1:cds;Parent=Msa0467480-mRNA-1
chr3_3	three_prime_UTR	68792098	68793679	68792098	ID=Msa0467480-mRNA-1:three_prime_utr;Parent=Msa0467480-mRNA-1
chr3_3	three_prime_UTR	68793806	68793991	68793806	ID=Msa0467480-mRNA-1:three_prime_utr;Parent=Msa0467480-mRNA-1
chr3_3	three_prime_UTR	68794401	68795576	68794401	ID=Msa0467480-mRNA-1:three_prime_utr;Parent=Msa0467480-mRNA-1

Gene Sequence	>Msa0467480 ATGATATATGCGGAAACTATTGTAAGCATGGCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGGCTGGATTAATGATGCTTTTGGACGTAAGAAGGCCACACTTAGTGCTGATGTTGTCTTTACTCTTGGATCAGTTGTTATGGCTGCCGCACCAGATGCATATGTTCTCATACTTGGCCGTCTTCTAGTTGGCATTGGTGTGGGCGTAGCTTCTGTCACTGCTCCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGTTCGTTAGTTAGCACAAATGTGCTTATGATAACTGGTGGACAGTTTCTTTCTTACCTCGTAAATCTTGCCTTTACCGAGGTTAGGCCTATCTTTCTTTGCTTCCTTTAA
Protein sequence	>Msa0467480 MIYAETIVSMALVGAIIGAATGGWINDAFGRKKATLSADVVFTLGSVVMAAAPDAYVLILGRLLVGIGVGVASVTAPVYIAESSPSEIRGSLVSTNVLMITGGQFLSYLVNLAFTEVRPIFLCFL*