AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1383780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383780 MtrunA17_Chr3g0142781 89.773 352 9 2 1 351 1 326 0.0 624
Msa1383780 MtrunA17_Chr1g0156711 69.577 355 70 7 1 349 1 323 1.76e-168 472
Msa1383780 MtrunA17_Chr5g0405581 65.926 270 79 4 8 265 8 276 6.09e-119 345
Msa1383780 MtrunA17_Chr8g0352471 67.755 245 75 3 9 252 9 250 8.31e-115 335
Msa1383780 MtrunA17_Chr8g0371781 70.042 237 64 3 19 250 21 255 1.37e-112 330
Msa1383780 MtrunA17_Chr8g0357311 65.200 250 83 3 10 258 10 256 3.26e-112 327
Msa1383780 MtrunA17_Chr4g0037351 63.374 243 86 3 8 248 6 247 1.62e-105 312
Msa1383780 MtrunA17_Chr4g0037331 60.081 248 90 6 1 248 1 239 1.23e-95 288
Msa1383780 MtrunA17_Chr8g0371771 52.218 293 129 6 2 293 7 289 7.44e-92 277
Msa1383780 MtrunA17_Chr7g0265011 53.386 251 113 4 1 251 43 289 9.30e-90 271
Msa1383780 MtrunA17_Chr5g0405611 59.916 237 82 7 14 248 82 307 1.69e-86 266
Msa1383780 MtrunA17_Chr5g0428801 51.969 254 116 5 7 257 8 258 2.42e-85 260
Msa1383780 MtrunA17_Chr2g0311561 55.172 232 100 3 18 248 3 231 1.32e-84 258
Msa1383780 MtrunA17_Chr2g0311521 54.118 255 108 6 11 260 8 258 2.22e-84 275
Msa1383780 MtrunA17_Chr8g0351851 52.245 245 109 6 4 248 1 237 8.97e-80 243
Msa1383780 MtrunA17_Chr1g0180121 51.639 244 111 4 9 248 1 241 1.36e-79 243
Msa1383780 MtrunA17_Chr2g0312181 50.628 239 115 3 11 248 6 242 1.15e-78 241
Msa1383780 MtrunA17_Chr1g0180221 50.593 253 119 4 1 250 34 283 2.05e-78 241
Msa1383780 MtrunA17_Chr2g0311551 52.263 243 110 5 20 260 17 255 3.32e-78 258
Msa1383780 MtrunA17_Chr1g0179891 52.459 244 109 5 7 250 2 238 3.75e-78 239
Msa1383780 MtrunA17_Chr1g0154591 54.852 237 97 7 16 248 1 231 1.06e-77 238
Msa1383780 MtrunA17_Chr1g0180231 52.439 246 112 4 5 250 3 243 1.52e-77 238
Msa1383780 MtrunA17_Chr1g0179871 52.439 246 112 4 5 250 3 243 1.52e-77 238
Msa1383780 MtrunA17_Chr6g0482741 50.000 242 116 4 7 248 3 239 1.33e-76 235
Msa1383780 MtrunA17_Chr1g0180161 51.250 240 113 4 29 268 25 260 1.49e-76 236
Msa1383780 MtrunA17_Chr1g0179851 51.230 244 110 5 11 250 2 240 1.03e-75 233
Msa1383780 MtrunA17_Chr3g0141341 54.911 224 95 6 26 248 12 230 3.81e-73 226
Msa1383780 MtrunA17_Chr8g0392961 49.388 245 119 4 4 248 5 244 3.71e-72 224
Msa1383780 MtrunA17_Chr6g0452331 45.669 254 129 7 1 248 1 251 5.89e-64 204
Msa1383780 MtrunA17_Chr3g0112091 47.083 240 120 7 11 248 2 236 2.83e-63 201
Msa1383780 MtrunA17_Chr5g0424221 46.154 247 121 8 3 249 6 240 7.07e-63 202
Msa1383780 MtrunA17_Chr7g0239131 46.586 249 124 7 1 248 1 241 6.35e-61 195
Msa1383780 MtrunA17_Chr4g0031221 43.210 243 126 8 11 249 18 252 5.23e-59 191
Msa1383780 MtrunA17_Chr2g0311531 47.009 234 94 8 21 253 22 226 8.70e-59 190
Msa1383780 MtrunA17_Chr5g0406771 52.000 175 79 3 16 187 3 175 5.95e-53 172
Msa1383780 MtrunA17_Chr5g0397831 41.935 248 115 8 9 248 9 235 6.00e-51 169
Msa1383780 MtrunA17_Chr2g0311501 45.833 192 95 7 69 256 3 189 1.92e-50 167
Msa1383780 MtrunA17_Chr5g0397821 39.556 225 112 7 25 248 23 224 1.21e-45 156
Msa1383780 MtrunA17_Chr8g0386341 39.024 246 122 9 6 248 27 247 4.04e-45 155
Msa1383780 MtrunA17_Chr2g0309611 31.250 256 160 6 1 247 1 249 2.60e-38 137
Msa1383780 MtrunA17_Chr1g0179911 30.116 259 149 9 2 250 3 239 4.00e-29 112
Msa1383780 MtrunA17_Chr8g0386351 43.662 142 66 6 1 141 43 171 4.64e-26 103
Msa1383780 MtrunA17_Chr1g0180181 55.814 86 37 1 167 252 18 102 2.21e-24 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383780 AT1G75800.1 58.929 336 97 3 4 326 1 308 2.34e-132 381
Msa1383780 AT1G20030.2 76.596 235 53 1 22 254 16 250 2.88e-130 375
Msa1383780 AT1G20030.1 76.395 233 53 1 24 254 1 233 8.14e-129 371
Msa1383780 AT4G36010.1 66.946 239 71 4 22 254 19 255 4.87e-110 323
Msa1383780 AT4G36010.2 66.946 239 71 4 22 254 19 255 4.87e-110 323
Msa1383780 AT2G17860.1 63.673 245 84 4 10 250 7 250 4.45e-105 309
Msa1383780 AT4G38670.3 59.756 246 98 1 4 248 1 246 2.16e-104 308
Msa1383780 AT4G38670.1 59.756 246 98 1 4 248 1 246 2.16e-104 308
Msa1383780 AT4G38670.2 63.043 230 84 1 20 248 1 230 9.83e-103 303
Msa1383780 AT4G24180.6 60.000 245 86 4 12 250 19 257 1.25e-92 277
Msa1383780 AT4G24180.5 58.498 253 93 4 4 250 6 252 1.88e-92 277
Msa1383780 AT4G24180.1 60.000 245 86 4 12 250 19 257 3.90e-92 278
Msa1383780 AT4G24180.2 58.498 253 93 4 4 250 6 252 4.21e-92 278
Msa1383780 AT4G38660.1 55.682 264 102 6 3 260 7 261 1.26e-91 278
Msa1383780 AT5G38280.1 54.583 240 107 2 11 248 10 249 2.27e-91 287
Msa1383780 AT5G38280.2 54.583 240 107 2 11 248 10 249 4.00e-91 286
Msa1383780 AT4G38660.2 58.704 247 87 6 20 260 2 239 7.11e-90 273
Msa1383780 AT4G24180.4 57.203 236 90 3 4 233 6 236 1.14e-84 259
Msa1383780 AT4G24180.3 58.772 228 83 3 12 233 19 241 1.23e-84 259
Msa1383780 AT5G24620.1 52.823 248 110 5 13 255 12 257 3.11e-81 254
Msa1383780 AT5G24620.4 52.823 248 110 5 13 255 67 312 6.33e-81 254
Msa1383780 AT1G19320.1 55.020 249 101 7 5 249 6 247 6.69e-81 247
Msa1383780 AT5G24620.3 52.823 248 110 5 13 255 88 333 1.09e-80 254
Msa1383780 AT1G75050.1 52.227 247 113 5 6 252 5 246 1.06e-79 244
Msa1383780 AT1G75040.1 54.733 243 101 7 6 248 5 238 1.31e-79 243
Msa1383780 AT1G75030.1 51.429 245 111 7 7 248 3 242 1.00e-76 236
Msa1383780 AT1G18250.2 51.528 229 106 4 25 253 21 244 1.13e-74 231
Msa1383780 AT1G18250.1 51.528 229 106 4 25 253 20 243 1.21e-74 231
Msa1383780 AT1G73620.1 52.232 224 102 4 25 248 41 259 1.42e-73 229
Msa1383780 AT1G77700.2 46.768 263 125 9 4 266 39 286 3.03e-69 219
Msa1383780 AT1G77700.3 48.606 251 109 9 4 250 39 273 4.39e-69 219
Msa1383780 AT2G28790.2 47.036 253 126 7 1 249 26 274 3.27e-68 216
Msa1383780 AT2G28790.1 47.222 252 125 7 1 248 1 248 5.50e-68 214
Msa1383780 AT1G77700.1 50.442 226 100 8 25 250 88 301 1.13e-66 214
Msa1383780 AT4G18253.1 42.339 248 133 4 4 250 1 239 1.30e-61 197
Msa1383780 AT5G40020.1 45.059 253 132 6 1 250 1 249 1.88e-61 197
Msa1383780 AT4G36000.2 63.636 165 47 5 102 263 1 155 1.13e-60 194
Msa1383780 AT4G36000.1 63.636 165 47 5 102 263 1 155 1.13e-60 194
Msa1383780 AT1G70250.1 44.351 239 120 6 24 256 143 374 2.27e-60 207
Msa1383780 AT5G02140.2 44.672 244 129 6 6 248 2 240 2.40e-59 192
Msa1383780 AT5G02140.1 44.672 244 129 6 6 248 2 240 3.43e-59 193
Msa1383780 AT4G18250.1 44.628 242 125 5 11 251 41 274 1.13e-57 198
Msa1383780 AT4G11650.1 39.544 263 128 9 4 265 1 233 1.83e-48 164
Msa1383780 AT5G24620.2 55.906 127 51 3 133 255 15 140 4.89e-39 140
Msa1383780 AT2G24810.1 58.025 81 31 2 169 249 116 193 6.11e-23 95.1

Find 136 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTGGGGAGGCCGTTTC+TGG -0.052359 tig0020612:-73529 Msa1383780:CDS
TTCTTTCTTCTGTGGTAATT+TGG 0.105512 tig0020612:+73849 None:intergenic
TGCTCCATTTACTTCATTTA+AGG 0.112130 tig0020612:-69990 Msa1383780:three_prime_UTR
ATACTTAATCTTTCAATATC+AGG 0.208828 tig0020612:-73695 Msa1383780:CDS
GCCACGTTTCCCACCAAATT+AGG 0.242961 tig0020612:-70184 Msa1383780:three_prime_UTR
CGTGGCTCATGAACCTAATT+TGG 0.261252 tig0020612:+70171 None:intergenic
TCTTTCTTCTGTGGTAATTT+GGG 0.261573 tig0020612:+73850 None:intergenic
TTTAATTCATTATGCCTTCA+TGG 0.275523 tig0020612:-70107 Msa1383780:three_prime_UTR
AGACCGATTCTTGATGTTAG+AGG 0.286093 tig0020612:-72297 Msa1383780:CDS
CAATCACCCCACCCGCTTCC+TGG 0.293774 tig0020612:-73544 Msa1383780:CDS
CGGTGGTGTTGCGCCGTTCC+CGG 0.299087 tig0020612:+73424 None:intergenic
TTCCTGGGGAGGCCGTTTCT+GGG 0.311657 tig0020612:-73528 Msa1383780:CDS
CAAACCTTAAATGAAGTAAA+TGG 0.317513 tig0020612:+69986 None:intergenic
CATTTACTTCATTTAAGGTT+TGG 0.324477 tig0020612:-69985 Msa1383780:three_prime_UTR
AGCGGGTGGGGTGATTGATT+TGG 0.328396 tig0020612:+73550 None:intergenic
GAGTCACTGCCATCTGATTT+CGG 0.335928 tig0020612:+70404 None:intergenic
CCCGGAGCATTCGACTTTGC+CGG 0.336054 tig0020612:+73442 None:intergenic
GTACGAATACCGGTTGTATC+GGG 0.375487 tig0020612:-73280 Msa1383780:CDS
CCGGCGTTGGAGAGAATTCC+CGG 0.381681 tig0020612:+73620 None:intergenic
TCACCTTGGGCTGTTGTTAG+TGG 0.384731 tig0020612:+72989 None:intergenic
TTGTGATGGTAAGAATAGTT+TGG 0.385951 tig0020612:+70279 None:intergenic
AATGAATTAAACAATGGATT+AGG 0.389652 tig0020612:+70119 None:intergenic
GGAAAATTCTCATGTCTTAC+CGG 0.390131 tig0020612:-73476 Msa1383780:CDS
TGTGATGGTAAGAATAGTTT+GGG 0.391149 tig0020612:+70280 None:intergenic
GCCTCCCCAGGAAGCGGGTG+GGG 0.392476 tig0020612:+73538 None:intergenic
TGTTGTGATATGAGAGAAGA+AGG 0.399923 tig0020612:+69857 None:intergenic
GTAACCAGTTATAGCATTAC+CGG 0.401599 tig0020612:+70019 None:intergenic
AATCACCCCACCCGCTTCCT+GGG 0.417844 tig0020612:-73543 Msa1383780:CDS
CTACGCCTAAAACAATTGCT+TGG 0.419389 tig0020612:-70144 Msa1383780:three_prime_UTR
TACGCCTAAAACAATTGCTT+GGG 0.426462 tig0020612:-70143 Msa1383780:three_prime_UTR
TTTCCCTCAAAACTAGGTTA+AGG 0.429188 tig0020612:-70208 Msa1383780:three_prime_UTR
CGCGTGTCCTTCAGAGCTTA+AGG 0.433220 tig0020612:-73246 Msa1383780:CDS
TACTTAATCTTTCAATATCA+GGG 0.436205 tig0020612:-73694 Msa1383780:CDS
ATGTTAGAGGAAAGAAACTT+TGG 0.447254 tig0020612:-72284 Msa1383780:CDS
ACCGGTTTCGTTCTTCAATC+CGG 0.449618 tig0020612:-73578 Msa1383780:CDS
TATTGTTGCAGCGGCGCGTA+TGG 0.455532 tig0020612:-73155 Msa1383780:CDS
TGTTAGAGGAAAGAAACTTT+GGG 0.458710 tig0020612:-72283 Msa1383780:CDS
TTGCAGTCAAAAGTCGTGGC+AGG 0.458754 tig0020612:-70435 Msa1383780:intron
CTTAAGGTTACGAGCGTGGA+TGG 0.458977 tig0020612:-73230 Msa1383780:CDS
GCCCCAGAAACGGCCTCCCC+AGG 0.462616 tig0020612:+73526 None:intergenic
TTGATCAGAGTGAAATATCA+TGG 0.466410 tig0020612:-70328 Msa1383780:CDS
CTCGAAGGTTTACAAGTGTT+AGG 0.467705 tig0020612:+73128 None:intergenic
TTGAAAGATTAAGTATGATA+AGG 0.468373 tig0020612:+73702 None:intergenic
AAAAGTGCTTGTGAGGCGTT+TGG 0.468766 tig0020612:-73188 Msa1383780:CDS
CGGATATGTATGGGCCATGA+AGG 0.481278 tig0020612:+70093 None:intergenic
ATGCAACTACACAGTCTGGC+CGG 0.486519 tig0020612:-73639 Msa1383780:CDS
TTTCCTCTAACATCAAGAAT+CGG 0.488587 tig0020612:+72294 None:intergenic
GCAAGTTCTTCTTTCTTCTG+TGG 0.490008 tig0020612:+73841 None:intergenic
AGAGAGTGCGGCCCCAGAAA+CGG 0.490637 tig0020612:+73516 None:intergenic
TGTACGAATACCGGTTGTAT+CGG 0.493746 tig0020612:-73281 Msa1383780:CDS
AAGCGGTGCAACGCCGGCGT+TGG 0.494696 tig0020612:+73607 None:intergenic
TTAGCGGAATTCACTCTTGA+CGG 0.495810 tig0020612:-73395 Msa1383780:CDS
AACACCACCGGCTACCTTAG+CGG 0.497856 tig0020612:-73411 Msa1383780:CDS
TCCGGCAAAGTCGAATGCTC+CGG 0.498921 tig0020612:-73443 Msa1383780:CDS
GGTTGGAAGCGGTGCAACGC+CGG 0.499056 tig0020612:+73601 None:intergenic
CGGGAACGGCGCAACACCAC+CGG 0.499852 tig0020612:-73423 Msa1383780:CDS
GGTTGTATCGGGGATTTGCT+CGG 0.500383 tig0020612:-73269 Msa1383780:CDS
ACCCCACCCGCTTCCTGGGG+AGG 0.502582 tig0020612:-73539 Msa1383780:CDS
TAACAACGGCTCTGGCTCAA+TGG 0.504154 tig0020612:-70366 Msa1383780:CDS
ACAAATGCAACTACACAGTC+TGG 0.504490 tig0020612:-73643 Msa1383780:CDS
GTAGTTCCACAAGGTGGCTC+CGG 0.507977 tig0020612:-73311 Msa1383780:CDS
GGCTCAATGGTGTACGTTGG+TGG 0.508308 tig0020612:-70353 Msa1383780:CDS
GTTGCACCGCTTCCAACCAC+CGG 0.509906 tig0020612:-73596 Msa1383780:CDS
GAGCAAATCCCCGATACAAC+CGG 0.510145 tig0020612:+73271 None:intergenic
CGGCCTCCCCAGGAAGCGGG+TGG 0.513133 tig0020612:+73536 None:intergenic
GCCGGATTGAAGAACGAAAC+CGG 0.514473 tig0020612:+73577 None:intergenic
GAAACGGCCTCCCCAGGAAG+CGG 0.516631 tig0020612:+73532 None:intergenic
GGCTCATGAACCTAATTTGG+TGG 0.516773 tig0020612:+70174 None:intergenic
CCGGCAAAGTCGAATGCTCC+GGG 0.517602 tig0020612:-73442 Msa1383780:CDS
AAACGGCCTCCCCAGGAAGC+GGG 0.522887 tig0020612:+73533 None:intergenic
GGTGATAACTGTACGAATAC+CGG 0.523090 tig0020612:-73290 Msa1383780:CDS
TTCGACGTGAGTTTAGTTGA+CGG 0.526291 tig0020612:-73353 Msa1383780:CDS
CCTTGTGGAACTACAAGCAT+TGG 0.527175 tig0020612:+73320 None:intergenic
GAATTCACTCTTGACGGATC+CGG 0.528777 tig0020612:-73389 Msa1383780:CDS
TAAGTTCTTATATCATTACA+TGG 0.530345 tig0020612:-73756 Msa1383780:exon
CCTCAGCTTAACAACGGCTC+TGG 0.530822 tig0020612:-70374 Msa1383780:CDS
TCCTGGGGAGGCCGTTTCTG+GGG 0.533325 tig0020612:-73527 Msa1383780:CDS
TGCAACTACACAGTCTGGCC+GGG 0.533665 tig0020612:-73638 Msa1383780:CDS
CCTTGGGCTGTTGTTAGTGG+AGG 0.540523 tig0020612:+72992 None:intergenic
GTGAATTCCGCTAAGGTAGC+CGG 0.545298 tig0020612:+73404 None:intergenic
GGTGATTGATTTGGAGTCGC+CGG 0.547268 tig0020612:+73559 None:intergenic
TGCTTGTGAGGCGTTTGGAA+CGG 0.555408 tig0020612:-73183 Msa1383780:CDS
CTCTGTTCCCAAGACTCCAC+CGG 0.561123 tig0020612:-73497 Msa1383780:CDS
CTCGTAACCTTAAGCTCTGA+AGG 0.561863 tig0020612:+73239 None:intergenic
CACGTTTACATGTGCTTCTG+CGG 0.562492 tig0020612:-73039 Msa1383780:CDS
AAAGTCGAATGCTCCGGGAA+CGG 0.563096 tig0020612:-73437 Msa1383780:CDS
ACGAAACCGGTGGTTGGAAG+CGG 0.564357 tig0020612:+73590 None:intergenic
GGCCTCCCCAGGAAGCGGGT+GGG 0.565175 tig0020612:+73537 None:intergenic
TTCACTCTTGACGGATCCGG+TGG 0.567093 tig0020612:-73386 Msa1383780:CDS
ACCTAATTTGGTGGGAAACG+TGG 0.570452 tig0020612:+70183 None:intergenic
ATCACCCCACCCGCTTCCTG+GGG 0.571380 tig0020612:-73542 Msa1383780:CDS
TACGAATACCGGTTGTATCG+GGG 0.573966 tig0020612:-73279 Msa1383780:CDS
AGAGCTTAAGGTTACGAGCG+TGG 0.575561 tig0020612:-73234 Msa1383780:CDS
TGCAGTCAAAAGTCGTGGCA+GGG 0.577535 tig0020612:-70434 Msa1383780:intron
TGAAGAACGAAACCGGTGGT+TGG 0.582201 tig0020612:+73584 None:intergenic
GGACAAAATCCGAAATCAGA+TGG 0.593450 tig0020612:-70413 Msa1383780:CDS
TAACCAGTTATAGCATTACC+GGG 0.594563 tig0020612:+70020 None:intergenic
AGGTTTGGATGTAAGACATG+TGG 0.596577 tig0020612:-69970 Msa1383780:three_prime_UTR
TTACCATCACAACGGCTATG+TGG 0.600620 tig0020612:-70268 Msa1383780:CDS
CCGGGAATTCTCTCCAACGC+CGG 0.602290 tig0020612:-73620 Msa1383780:CDS
CTTACCGGCGATTGTAACTC+CGG 0.603049 tig0020612:-73461 Msa1383780:CDS
GAGCCACATAGCCGTTGTGA+TGG 0.604066 tig0020612:+70265 None:intergenic
TGATCAGAGTGAAATATCAT+GGG 0.606552 tig0020612:-70327 Msa1383780:CDS
TTAAGGTTACGAGCGTGGAT+GGG 0.608209 tig0020612:-73229 Msa1383780:CDS
AACAACTCAGAATAACTCGA+AGG 0.608498 tig0020612:+73113 None:intergenic
GTCAAGAGTGAATTCCGCTA+AGG 0.614672 tig0020612:+73397 None:intergenic
CCAATGCTTGTAGTTCCACA+AGG 0.616622 tig0020612:-73320 Msa1383780:CDS
GTTGTGATATGAGAGAAGAA+GGG 0.617376 tig0020612:+69858 None:intergenic
GCTCATGAACCTAATTTGGT+GGG 0.618681 tig0020612:+70175 None:intergenic
ACTTAATCTTTCAATATCAG+GGG 0.619589 tig0020612:-73693 Msa1383780:CDS
TTATCACCGGAGCCACCTTG+TGG 0.619692 tig0020612:+73305 None:intergenic
AGGCATAATGAATTAAACAA+TGG 0.622637 tig0020612:+70113 None:intergenic
TCAACACAGTGAAGATCCCC+CGG 0.623518 tig0020612:-70038 Msa1383780:three_prime_UTR
TTTGCCGGAGTTACAATCGC+CGG 0.625708 tig0020612:+73457 None:intergenic
ACGGCACAATATTGTTGCAG+CGG 0.630605 tig0020612:-73164 Msa1383780:CDS
GTCGAAGAAATCGAGTCCAC+CGG 0.632997 tig0020612:+73370 None:intergenic
CCAGAGCCGTTGTTAAGCTG+AGG 0.634119 tig0020612:+70374 None:intergenic
TCTGGCTCAATGGTGTACGT+TGG 0.639261 tig0020612:-70356 Msa1383780:CDS
GGCGTGTAAAAGTGCTTGTG+AGG 0.640993 tig0020612:-73195 Msa1383780:CDS
CATTTGATTAAACAAAACTG+TGG 0.644215 tig0020612:-70062 Msa1383780:three_prime_UTR
CGTGGATGGGAAAGAGAGCG+TGG 0.649504 tig0020612:-73216 Msa1383780:CDS
CCTCCACTAACAACAGCCCA+AGG 0.650691 tig0020612:-72992 Msa1383780:intron
GGTATTCGTACAGTTATCAC+CGG 0.657314 tig0020612:+73292 None:intergenic
AGAAGTGGAAAAGCTGACAC+AGG 0.666411 tig0020612:+70243 None:intergenic
TTTCCACACATTGATACACG+TGG 0.670795 tig0020612:+70304 None:intergenic
AACTATTCTTACCATCACAA+CGG 0.673194 tig0020612:-70276 Msa1383780:CDS
AGTCTTGGGAACAGAGAGTG+CGG 0.677635 tig0020612:+73504 None:intergenic
AACCAGTTATAGCATTACCG+GGG 0.684276 tig0020612:+70021 None:intergenic
TCATCGCCTCAGCTTAACAA+CGG 0.684947 tig0020612:-70380 Msa1383780:CDS
TAATGCTATAACTGGTTACG+AGG 0.685018 tig0020612:-70015 Msa1383780:three_prime_UTR
GGGCCACGTGTATCAATGTG+TGG 0.689160 tig0020612:-70307 Msa1383780:CDS
ATGCTTGTAGTTCCACAAGG+TGG 0.691545 tig0020612:-73317 Msa1383780:CDS
TACGCGTAGCTATACGCGCG+TGG 0.692773 tig0020612:+73077 None:intergenic
AATTCCGCTAAGGTAGCCGG+TGG 0.692922 tig0020612:+73407 None:intergenic
ACCAGTTATAGCATTACCGG+GGG 0.700155 tig0020612:+70022 None:intergenic
GGATTGAAGAACGAAACCGG+TGG 0.773497 tig0020612:+73580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTTATTGAAATGTA+GGG + tig0020612:70855-70874 None:intergenic 10.0%
!! AAAAATATTTATTGAAATGT+AGG + tig0020612:70856-70875 None:intergenic 10.0%
!! ATAAAAGTAAATAAATACTA+GGG + tig0020612:72164-72183 None:intergenic 10.0%
!! AATAAAAGTAAATAAATACT+AGG + tig0020612:72165-72184 None:intergenic 10.0%
!!! AATTGTTTTATTTAATTCTA+TGG + tig0020612:72639-72658 None:intergenic 10.0%
!! ATAGAATTAAATAAAACAAT+TGG - tig0020612:72638-72657 Msa1383780:intron 10.0%
!!! TTTTTGTTACAGTTTTTTAA+TGG - tig0020612:70967-70986 Msa1383780:intron 15.0%
!!! TTTTTGGATTATTATTTTGT+TGG - tig0020612:71685-71704 Msa1383780:intron 15.0%
!! AAATTAGTAAAGAAGAAAAT+TGG + tig0020612:71836-71855 None:intergenic 15.0%
!! AAAAACATTTACTTAAATGT+AGG - tig0020612:72089-72108 Msa1383780:intron 15.0%
!! AAAACATTTACTTAAATGTA+GGG - tig0020612:72090-72109 Msa1383780:intron 15.0%
!!! TAATTGGTTTTATAAAGTAT+AGG + tig0020612:72589-72608 None:intergenic 15.0%
!!! ATTGATAGATTTTGTATAAT+TGG + tig0020612:72605-72624 None:intergenic 15.0%
!! TAAGTTCTTATATCATTACA+TGG - tig0020612:69987-70006 Msa1383780:three_prime_UTR 20.0%
!! TTGAAAGATTAAGTATGATA+AGG + tig0020612:70044-70063 None:intergenic 20.0%
!! ATACTTAATCTTTCAATATC+AGG - tig0020612:70048-70067 Msa1383780:three_prime_UTR 20.0%
!! TACTTAATCTTTCAATATCA+GGG - tig0020612:70049-70068 Msa1383780:three_prime_UTR 20.0%
!!! TTTTAGTACTAGTAGTATTT+AGG - tig0020612:70780-70799 Msa1383780:intron 20.0%
!! TTTAGTACTAGTAGTATTTA+GGG - tig0020612:70781-70800 Msa1383780:intron 20.0%
!!! TTTAGGGTTAAATATGTTAT+TGG - tig0020612:70797-70816 Msa1383780:intron 20.0%
!!! TTACAGTTTTTTAATGGATT+GGG - tig0020612:70973-70992 Msa1383780:intron 20.0%
!!! AAGATTGTGAATGAATTTTA+TGG + tig0020612:71131-71150 None:intergenic 20.0%
!!! TGTTGGATTTATGATTTTTT+TGG - tig0020612:71702-71721 Msa1383780:intron 20.0%
!!! TTTTTTCTTATAAATGTGAC+CGG + tig0020612:72414-72433 None:intergenic 20.0%
!!! TTTAGTCAAATTTCACTTTT+TGG - tig0020612:72938-72957 Msa1383780:intron 20.0%
!!! TTAGTCAAATTTCACTTTTT+GGG - tig0020612:72939-72958 Msa1383780:intron 20.0%
!! CTTAAAAATGAGTTTATAGA+GGG + tig0020612:73183-73202 None:intergenic 20.0%
!!! AATGAATTAAACAATGGATT+AGG + tig0020612:73627-73646 None:intergenic 20.0%
!!! TTTAATCAAATGAGCTTTTT+CGG + tig0020612:73673-73692 None:intergenic 20.0%
!! TGTGGCAAAAAAATATTTAA+CGG - tig0020612:73791-73810 Msa1383780:five_prime_UTR 20.0%
! ATTTGGGAACAAAAAGATTA+CGG + tig0020612:69880-69899 None:intergenic 25.0%
! ACTTAATCTTTCAATATCAG+GGG - tig0020612:70050-70069 Msa1383780:three_prime_UTR 25.0%
! AGTACTAAAATAATCACCTT+GGG + tig0020612:70770-70789 None:intergenic 25.0%
! TAGTACTAAAATAATCACCT+TGG + tig0020612:70771-70790 None:intergenic 25.0%
!!! GTTACAGTTTTTTAATGGAT+TGG - tig0020612:70972-70991 Msa1383780:intron 25.0%
!! TTGTGAATGAATTTTATGGT+CGG + tig0020612:71127-71146 None:intergenic 25.0%
! ATACTGTTCGTAACATTATT+AGG + tig0020612:71536-71555 None:intergenic 25.0%
!! AAAGAAGCAAATGTTTTTCT+AGG + tig0020612:71611-71630 None:intergenic 25.0%
!!! TGATTTTTTTGGTTTTAGAG+AGG - tig0020612:71713-71732 Msa1383780:intron 25.0%
!!! GATTTTTTTGGTTTTAGAGA+GGG - tig0020612:71714-71733 Msa1383780:intron 25.0%
! ATGTACACTTATTTAATGTG+TGG - tig0020612:71916-71935 Msa1383780:intron 25.0%
! TGTACACTTATTTAATGTGT+GGG - tig0020612:71917-71936 Msa1383780:intron 25.0%
! ATGTAGGGACTATTTATTAA+AGG - tig0020612:72105-72124 Msa1383780:intron 25.0%
!! ATTAAAGGAGTGTAAAATGT+AGG - tig0020612:72120-72139 Msa1383780:intron 25.0%
!! TTAAAGGAGTGTAAAATGTA+GGG - tig0020612:72121-72140 Msa1383780:intron 25.0%
!! AATAGAGTACTAAGTAGTAA+CGG + tig0020612:72305-72324 None:intergenic 25.0%
! TAATTATTCTGTACTTCATC+CGG - tig0020612:72392-72411 Msa1383780:intron 25.0%
! ATGTATCTAGTCACATTTAT+AGG + tig0020612:72475-72494 None:intergenic 25.0%
!!! TTGGTTTTATAAAGTATAGG+TGG + tig0020612:72586-72605 None:intergenic 25.0%
! CCATATAATCAATTGAGATT+CGG + tig0020612:72851-72870 None:intergenic 25.0%
!! AGAACTTGAGAGATTTTATT+AGG - tig0020612:73067-73086 Msa1383780:CDS 25.0%
! GCTTAAAAATGAGTTTATAG+AGG + tig0020612:73184-73203 None:intergenic 25.0%
! TTACAGAAAGAAAAGATTCT+TGG + tig0020612:73259-73278 None:intergenic 25.0%
! AGGCATAATGAATTAAACAA+TGG + tig0020612:73633-73652 None:intergenic 25.0%
! TTTAATTCATTATGCCTTCA+TGG - tig0020612:73636-73655 Msa1383780:CDS 25.0%
! CATTTGATTAAACAAAACTG+TGG - tig0020612:73681-73700 Msa1383780:CDS 25.0%
! CAAACCTTAAATGAAGTAAA+TGG + tig0020612:73760-73779 None:intergenic 25.0%
!! CATTTACTTCATTTAAGGTT+TGG - tig0020612:73758-73777 Msa1383780:exon 25.0%
TCTTTCTTCTGTGGTAATTT+GGG + tig0020612:69896-69915 None:intergenic 30.0%
TTCTTTCTTCTGTGGTAATT+TGG + tig0020612:69897-69916 None:intergenic 30.0%
! CATTATTCTGTTTGATGACT+GGG + tig0020612:70934-70953 None:intergenic 30.0%
! TCATTATTCTGTTTGATGAC+TGG + tig0020612:70935-70954 None:intergenic 30.0%
CATCAAACAGAATAATGATG+TGG - tig0020612:70937-70956 Msa1383780:intron 30.0%
GAAGAAGAAGAAATTTGAGT+TGG + tig0020612:71035-71054 None:intergenic 30.0%
AATAACATGTTTCAGCAGTT+GGG + tig0020612:71370-71389 None:intergenic 30.0%
AAATAACATGTTTCAGCAGT+TGG + tig0020612:71371-71390 None:intergenic 30.0%
TTTCCTCTAACATCAAGAAT+CGG + tig0020612:71452-71471 None:intergenic 30.0%
ATGTTAGAGGAAAGAAACTT+TGG - tig0020612:71459-71478 Msa1383780:intron 30.0%
TGTTAGAGGAAAGAAACTTT+GGG - tig0020612:71460-71479 Msa1383780:intron 30.0%
! TTGTTATTGCTGTTAAATCC+TGG - tig0020612:71657-71676 Msa1383780:intron 30.0%
!!! TTAAATCCTGGTGTTGTTTT+TGG - tig0020612:71669-71688 Msa1383780:intron 30.0%
AATAATCCAAAAACAACACC+AGG + tig0020612:71678-71697 None:intergenic 30.0%
GAAAAGATGAATAGATGAAG+AGG - tig0020612:71767-71786 Msa1383780:intron 30.0%
TTTGAATGAAGTATGAACGT+TGG - tig0020612:72251-72270 Msa1383780:CDS 30.0%
TTACAAATCACATACTTCCT+CGG + tig0020612:72546-72565 None:intergenic 30.0%
! CAATCAATTGGAGAGTATAA+AGG + tig0020612:72821-72840 None:intergenic 30.0%
CCGAATCTCAATTGATTATA+TGG - tig0020612:72848-72867 Msa1383780:intron 30.0%
!! GGATTAGAATTTTAGCCTTT+AGG - tig0020612:72869-72888 Msa1383780:intron 30.0%
!! TTAGAATTTTAGCCTTTAGG+TGG - tig0020612:72872-72891 Msa1383780:intron 30.0%
!! TTGATAATGTATCCACCTAA+AGG + tig0020612:72887-72906 None:intergenic 30.0%
CATTATCAATTAAGCACATG+TGG - tig0020612:72898-72917 Msa1383780:intron 30.0%
!!! TTTCACTTTTTGGGATATCA+CGG - tig0020612:72948-72967 Msa1383780:intron 30.0%
TTGATCAGAGTGAAATATCA+TGG - tig0020612:73415-73434 Msa1383780:CDS 30.0%
TGATCAGAGTGAAATATCAT+GGG - tig0020612:73416-73435 Msa1383780:CDS 30.0%
TGTGATGGTAAGAATAGTTT+GGG + tig0020612:73466-73485 None:intergenic 30.0%
TTGTGATGGTAAGAATAGTT+TGG + tig0020612:73467-73486 None:intergenic 30.0%
AACTATTCTTACCATCACAA+CGG - tig0020612:73467-73486 Msa1383780:CDS 30.0%
AAAAATGCTGTGTTTAGAAG+TGG + tig0020612:73518-73537 None:intergenic 30.0%
TGCTCCATTTACTTCATTTA+AGG - tig0020612:73753-73772 Msa1383780:exon 30.0%
! GGTAAGACATGAGAATTTTC+CGG + tig0020612:70268-70287 None:intergenic 35.0%
GGAAAATTCTCATGTCTTAC+CGG - tig0020612:70267-70286 Msa1383780:CDS 35.0%
AACAACTCAGAATAACTCGA+AGG + tig0020612:70633-70652 None:intergenic 35.0%
TGTAGGGACTATTCTTCAAA+GGG + tig0020612:70839-70858 None:intergenic 35.0%
ATGTAGGGACTATTCTTCAA+AGG + tig0020612:70840-70859 None:intergenic 35.0%
GCTAACGGAGTAAAAATGTA+GGG + tig0020612:70884-70903 None:intergenic 35.0%
TGCTAACGGAGTAAAAATGT+AGG + tig0020612:70885-70904 None:intergenic 35.0%
ATGACTGGGTAGAATTTAAC+GGG + tig0020612:70920-70939 None:intergenic 35.0%
GATGACTGGGTAGAATTTAA+CGG + tig0020612:70921-70940 None:intergenic 35.0%
!! ATGGATTGGGCTTAATGAAA+TGG - tig0020612:70986-71005 Msa1383780:intron 35.0%
! TGGATTGGGCTTAATGAAAT+GGG - tig0020612:70987-71006 Msa1383780:intron 35.0%
!! GAAATTTGAGTTGGATCCAT+GGG + tig0020612:71026-71045 None:intergenic 35.0%
!! AGAAATTTGAGTTGGATCCA+TGG + tig0020612:71027-71046 None:intergenic 35.0%
! TGAATGAATTTTATGGTCGG+TGG + tig0020612:71124-71143 None:intergenic 35.0%
! AGATTTATGAGCGATGGTTT+TGG + tig0020612:71295-71314 None:intergenic 35.0%
ATGCTGATAGCATATTAAGC+TGG - tig0020612:71405-71424 Msa1383780:intron 35.0%
TGCTGATAGCATATTAAGCT+GGG - tig0020612:71406-71425 Msa1383780:intron 35.0%
! GCAAATGTTTTTCTAGGTAC+AGG + tig0020612:71605-71624 None:intergenic 35.0%
TTGCCACATCACAAACTAAT+TGG - tig0020612:71980-71999 Msa1383780:intron 35.0%
TGCCACATCACAAACTAATT+GGG - tig0020612:71981-72000 Msa1383780:intron 35.0%
GCATTCCGTTTGGAAATTAA+CGG - tig0020612:72024-72043 Msa1383780:intron 35.0%
TACTAAGTAGTAACGGTTAG+CGG + tig0020612:72298-72317 None:intergenic 35.0%
TACAAATCACATACTTCCTC+GGG + tig0020612:72545-72564 None:intergenic 35.0%
TACATAGGACTATAGCCTAT+AGG + tig0020612:72724-72743 None:intergenic 35.0%
ATAGGCTATAGTCCTATGTA+TGG - tig0020612:72724-72743 Msa1383780:intron 35.0%
TAGGCTATAGTCCTATGTAT+GGG - tig0020612:72725-72744 Msa1383780:intron 35.0%
! TTCGGTGTACTTCAATCAAT+TGG + tig0020612:72833-72852 None:intergenic 35.0%
GATTCTTGGCGTACATTATT+TGG + tig0020612:73245-73264 None:intergenic 35.0%
! AGCATTTTTCCCTCAAAACT+AGG - tig0020612:73529-73548 Msa1383780:CDS 35.0%
TTTCCCTCAAAACTAGGTTA+AGG - tig0020612:73535-73554 Msa1383780:CDS 35.0%
TACGCCTAAAACAATTGCTT+GGG - tig0020612:73600-73619 Msa1383780:CDS 35.0%
!!! GAGCTTTTTCGGATATGTAT+GGG + tig0020612:73662-73681 None:intergenic 35.0%
!!! TGAGCTTTTTCGGATATGTA+TGG + tig0020612:73663-73682 None:intergenic 35.0%
TAACCAGTTATAGCATTACC+GGG + tig0020612:73726-73745 None:intergenic 35.0%
GTAACCAGTTATAGCATTAC+CGG + tig0020612:73727-73746 None:intergenic 35.0%
TAATGCTATAACTGGTTACG+AGG - tig0020612:73728-73747 Msa1383780:CDS 35.0%
GCAAGTTCTTCTTTCTTCTG+TGG + tig0020612:69905-69924 None:intergenic 40.0%
ACAAATGCAACTACACAGTC+TGG - tig0020612:70100-70119 Msa1383780:three_prime_UTR 40.0%
! AAGACATGAGAATTTTCCGG+TGG + tig0020612:70265-70284 None:intergenic 40.0%
TTAGCGGAATTCACTCTTGA+CGG - tig0020612:70348-70367 Msa1383780:CDS 40.0%
TTCGACGTGAGTTTAGTTGA+CGG - tig0020612:70390-70409 Msa1383780:CDS 40.0%
GGTATTCGTACAGTTATCAC+CGG + tig0020612:70454-70473 None:intergenic 40.0%
GGTGATAACTGTACGAATAC+CGG - tig0020612:70453-70472 Msa1383780:intron 40.0%
! TGTACGAATACCGGTTGTAT+CGG - tig0020612:70462-70481 Msa1383780:intron 40.0%
CTCGAAGGTTTACAAGTGTT+AGG + tig0020612:70618-70637 None:intergenic 40.0%
! TCAAAGGGGCACAAAATGTA+GGG + tig0020612:70824-70843 None:intergenic 40.0%
! TTCAAAGGGGCACAAAATGT+AGG + tig0020612:70825-70844 None:intergenic 40.0%
GTAGGGACTATTCTTCAAAG+GGG + tig0020612:70838-70857 None:intergenic 40.0%
GGAGGGACTATTTATGCTAA+CGG + tig0020612:70899-70918 None:intergenic 40.0%
GGAAGGTGAATCCATGATTA+CGG + tig0020612:71241-71260 None:intergenic 40.0%
TTGCTGAGATTTATGAGCGA+TGG + tig0020612:71301-71320 None:intergenic 40.0%
!! TGCTATCAGCATCTGCTTTT+GGG + tig0020612:71397-71416 None:intergenic 40.0%
! ATGCTATCAGCATCTGCTTT+TGG + tig0020612:71398-71417 None:intergenic 40.0%
! AGACCGATTCTTGATGTTAG+AGG - tig0020612:71446-71465 Msa1383780:intron 40.0%
TACGAACAGTATCACTCTCA+AGG - tig0020612:71544-71563 Msa1383780:intron 40.0%
GAGACATGTGGATGTTTATG+TGG + tig0020612:71953-71972 None:intergenic 40.0%
GGCAAAAAAACAGAGACATG+TGG + tig0020612:71965-71984 None:intergenic 40.0%
GCCACATCACAAACTAATTG+GGG - tig0020612:71982-72001 Msa1383780:intron 40.0%
TTAACGGCAGGGACTAAATT+TGG - tig0020612:72040-72059 Msa1383780:intron 40.0%
GCAGGGACTAAATTTGGTAA+CGG - tig0020612:72046-72065 Msa1383780:intron 40.0%
! CAGGGACTAAATTTGGTAAC+GGG - tig0020612:72047-72066 Msa1383780:intron 40.0%
!! GGTAACGGGAGTAAAATGTA+AGG - tig0020612:72061-72080 Msa1383780:intron 40.0%
TTGCTTATAAATGTGACCCG+AGG - tig0020612:72526-72545 Msa1383780:intron 40.0%
AACTCTATGCTTAGCTCGAA+GGG - tig0020612:72661-72680 Msa1383780:intron 40.0%
GGTTTATAATGCACTGCATC+TGG - tig0020612:72695-72714 Msa1383780:intron 40.0%
CAAAATCTGGTCCCATACAT+AGG + tig0020612:72739-72758 None:intergenic 40.0%
!! TGGGACCAGATTTTGAAGAA+AGG - tig0020612:72744-72763 Msa1383780:intron 40.0%
CCTTGCCTTTCTTCAAAATC+TGG + tig0020612:72752-72771 None:intergenic 40.0%
!! CCAGATTTTGAAGAAAGGCA+AGG - tig0020612:72749-72768 Msa1383780:intron 40.0%
TGAAGAAAGGCAAGGAAAAG+TGG - tig0020612:72757-72776 Msa1383780:intron 40.0%
! GTTTTTGCAGTCAAAAGTCG+TGG - tig0020612:73304-73323 Msa1383780:CDS 40.0%
GGACAAAATCCGAAATCAGA+TGG - tig0020612:73330-73349 Msa1383780:CDS 40.0%
TTTCCACACATTGATACACG+TGG + tig0020612:73442-73461 None:intergenic 40.0%
!!! GCTCCTTAACCTAGTTTTGA+GGG + tig0020612:73541-73560 None:intergenic 40.0%
GCTCATGAACCTAATTTGGT+GGG + tig0020612:73571-73590 None:intergenic 40.0%
!! TGTTTTAGGCGTAGAAAACG+TGG + tig0020612:73593-73612 None:intergenic 40.0%
CTACGCCTAAAACAATTGCT+TGG - tig0020612:73599-73618 Msa1383780:CDS 40.0%
! AGGTCCCAAGCAATTGTTTT+AGG + tig0020612:73607-73626 None:intergenic 40.0%
AACCAGTTATAGCATTACCG+GGG + tig0020612:73725-73744 None:intergenic 40.0%
AGGTTTGGATGTAAGACATG+TGG - tig0020612:73773-73792 Msa1383780:five_prime_UTR 40.0%
! ACCGGTTTCGTTCTTCAATC+CGG - tig0020612:70165-70184 Msa1383780:three_prime_UTR 45.0%
! GAATTTTCCGGTGGAGTCTT+GGG + tig0020612:70256-70275 None:intergenic 45.0%
! AGAATTTTCCGGTGGAGTCT+TGG + tig0020612:70257-70276 None:intergenic 45.0%
GTCAAGAGTGAATTCCGCTA+AGG + tig0020612:70349-70368 None:intergenic 45.0%
! GAATTCACTCTTGACGGATC+CGG - tig0020612:70354-70373 Msa1383780:CDS 45.0%
CCTTGTGGAACTACAAGCAT+TGG + tig0020612:70426-70445 None:intergenic 45.0%
CCAATGCTTGTAGTTCCACA+AGG - tig0020612:70423-70442 Msa1383780:CDS 45.0%
ATGCTTGTAGTTCCACAAGG+TGG - tig0020612:70426-70445 Msa1383780:CDS 45.0%
! GTACGAATACCGGTTGTATC+GGG - tig0020612:70463-70482 Msa1383780:intron 45.0%
! TACGAATACCGGTTGTATCG+GGG - tig0020612:70464-70483 Msa1383780:intron 45.0%
! CTCGTAACCTTAAGCTCTGA+AGG + tig0020612:70507-70526 None:intergenic 45.0%
TTAAGGTTACGAGCGTGGAT+GGG - tig0020612:70514-70533 Msa1383780:intron 45.0%
!! AAAAGTGCTTGTGAGGCGTT+TGG - tig0020612:70555-70574 Msa1383780:intron 45.0%
ACGGCACAATATTGTTGCAG+CGG - tig0020612:70579-70598 Msa1383780:intron 45.0%
CACGTTTACATGTGCTTCTG+CGG - tig0020612:70704-70723 Msa1383780:intron 45.0%
CTGGGTAGAATTTAACGGGA+GGG + tig0020612:70916-70935 None:intergenic 45.0%
ACTGGGTAGAATTTAACGGG+AGG + tig0020612:70917-70936 None:intergenic 45.0%
!! TTTGAGTTGGATCCATGGGT+CGG + tig0020612:71022-71041 None:intergenic 45.0%
GGATGTTTATGTGGCAGCAA+TGG + tig0020612:71944-71963 None:intergenic 45.0%
!! GCCCCAATTAGTTTGTGATG+TGG + tig0020612:71986-72005 None:intergenic 45.0%
TCCGTTTGGAAATTAACGGC+AGG - tig0020612:72028-72047 Msa1383780:intron 45.0%
CCCTGCCGTTAATTTCCAAA+CGG + tig0020612:72032-72051 None:intergenic 45.0%
CCGTTTGGAAATTAACGGCA+GGG - tig0020612:72029-72048 Msa1383780:intron 45.0%
GAACTCTATGCTTAGCTCGA+AGG - tig0020612:72660-72679 Msa1383780:intron 45.0%
GCTCGAAGGGCTACTAATAA+TGG - tig0020612:72674-72693 Msa1383780:intron 45.0%
GAGTCACTGCCATCTGATTT+CGG + tig0020612:73342-73361 None:intergenic 45.0%
TCATCGCCTCAGCTTAACAA+CGG - tig0020612:73363-73382 Msa1383780:CDS 45.0%
TTACCATCACAACGGCTATG+TGG - tig0020612:73475-73494 Msa1383780:CDS 45.0%
AGAAGTGGAAAAGCTGACAC+AGG + tig0020612:73503-73522 None:intergenic 45.0%
!!! GGCTCCTTAACCTAGTTTTG+AGG + tig0020612:73542-73561 None:intergenic 45.0%
! ACCTAATTTGGTGGGAAACG+TGG + tig0020612:73563-73582 None:intergenic 45.0%
GGCTCATGAACCTAATTTGG+TGG + tig0020612:73572-73591 None:intergenic 45.0%
CGTGGCTCATGAACCTAATT+TGG + tig0020612:73575-73594 None:intergenic 45.0%
ACCAGTTATAGCATTACCGG+GGG + tig0020612:73724-73743 None:intergenic 45.0%
!!! TAATTTAATGTTTTAAAAAA+CGG + tig0020612:72374-72393 None:intergenic 5.0%
ATGCAACTACACAGTCTGGC+CGG - tig0020612:70104-70123 Msa1383780:three_prime_UTR 50.0%
TGAAGAACGAAACCGGTGGT+TGG + tig0020612:70162-70181 None:intergenic 50.0%
GGATTGAAGAACGAAACCGG+TGG + tig0020612:70166-70185 None:intergenic 50.0%
GCCGGATTGAAGAACGAAAC+CGG + tig0020612:70169-70188 None:intergenic 50.0%
!! GGTGATTGATTTGGAGTCGC+CGG + tig0020612:70187-70206 None:intergenic 50.0%
AGTCTTGGGAACAGAGAGTG+CGG + tig0020612:70242-70261 None:intergenic 50.0%
CTTACCGGCGATTGTAACTC+CGG - tig0020612:70282-70301 Msa1383780:CDS 50.0%
TTTGCCGGAGTTACAATCGC+CGG + tig0020612:70289-70308 None:intergenic 50.0%
AAAGTCGAATGCTCCGGGAA+CGG - tig0020612:70306-70325 Msa1383780:CDS 50.0%
GTGAATTCCGCTAAGGTAGC+CGG + tig0020612:70342-70361 None:intergenic 50.0%
GTCGAAGAAATCGAGTCCAC+CGG + tig0020612:70376-70395 None:intergenic 50.0%
GAGCAAATCCCCGATACAAC+CGG + tig0020612:70475-70494 None:intergenic 50.0%
! GGTTGTATCGGGGATTTGCT+CGG - tig0020612:70474-70493 Msa1383780:intron 50.0%
AGAGCTTAAGGTTACGAGCG+TGG - tig0020612:70509-70528 Msa1383780:intron 50.0%
CTTAAGGTTACGAGCGTGGA+TGG - tig0020612:70513-70532 Msa1383780:intron 50.0%
!! GGCGTGTAAAAGTGCTTGTG+AGG - tig0020612:70548-70567 Msa1383780:intron 50.0%
! TGCTTGTGAGGCGTTTGGAA+CGG - tig0020612:70560-70579 Msa1383780:intron 50.0%
TCACCTTGGGCTGTTGTTAG+TGG + tig0020612:70757-70776 None:intergenic 50.0%
!! TTGAGTTGGATCCATGGGTC+GGG + tig0020612:71021-71040 None:intergenic 50.0%
TTTATGGTCGGTGGTGAGCA+GGG + tig0020612:71115-71134 None:intergenic 50.0%
! TTTTATGGTCGGTGGTGAGC+AGG + tig0020612:71116-71135 None:intergenic 50.0%
GAGAGAGAGGGGAAAATGGA+GGG + tig0020612:71154-71173 None:intergenic 50.0%
AGAGAGAGAGGGGAAAATGG+AGG + tig0020612:71155-71174 None:intergenic 50.0%
GAGAGAGAGAGAGGGGAAAA+TGG + tig0020612:71158-71177 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG + tig0020612:71165-71184 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + tig0020612:71166-71185 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + tig0020612:71165-71184 None:intergenic 50.0%
CTTCCCGCTTCTACTCTCAA+CGG - tig0020612:71203-71222 Msa1383780:intron 50.0%
TTCCCGCTTCTACTCTCAAC+GGG - tig0020612:71204-71223 Msa1383780:intron 50.0%
TCACCCGTTGAGAGTAGAAG+CGG + tig0020612:71210-71229 None:intergenic 50.0%
ATGCTGACGTGGCATCAAGT+GGG + tig0020612:72008-72027 None:intergenic 50.0%
AATGCTGACGTGGCATCAAG+TGG + tig0020612:72009-72028 None:intergenic 50.0%
TTCCAAACGGAATGCTGACG+TGG + tig0020612:72019-72038 None:intergenic 50.0%
CACTGCATCTGGTCTCCTAT+AGG - tig0020612:72706-72725 Msa1383780:intron 50.0%
TTGCAGTCAAAAGTCGTGGC+AGG - tig0020612:73308-73327 Msa1383780:CDS 50.0%
TGCAGTCAAAAGTCGTGGCA+GGG - tig0020612:73309-73328 Msa1383780:CDS 50.0%
! TAACAACGGCTCTGGCTCAA+TGG - tig0020612:73377-73396 Msa1383780:CDS 50.0%
! TCTGGCTCAATGGTGTACGT+TGG - tig0020612:73387-73406 Msa1383780:CDS 50.0%
GCCACGTTTCCCACCAAATT+AGG - tig0020612:73559-73578 Msa1383780:CDS 50.0%
CGGATATGTATGGGCCATGA+AGG + tig0020612:73653-73672 None:intergenic 50.0%
TCAACACAGTGAAGATCCCC+CGG - tig0020612:73705-73724 Msa1383780:CDS 50.0%
TCCCCCGGTAATGCTATAAC+TGG - tig0020612:73720-73739 Msa1383780:CDS 50.0%
TGCAACTACACAGTCTGGCC+GGG - tig0020612:70105-70124 Msa1383780:three_prime_UTR 55.0%
ACGAAACCGGTGGTTGGAAG+CGG + tig0020612:70156-70175 None:intergenic 55.0%
AGCGGGTGGGGTGATTGATT+TGG + tig0020612:70196-70215 None:intergenic 55.0%
CTCTGTTCCCAAGACTCCAC+CGG - tig0020612:70246-70265 Msa1383780:CDS 55.0%
TCCGGCAAAGTCGAATGCTC+CGG - tig0020612:70300-70319 Msa1383780:CDS 55.0%
! AACACCACCGGCTACCTTAG+CGG - tig0020612:70332-70351 Msa1383780:CDS 55.0%
AATTCCGCTAAGGTAGCCGG+TGG + tig0020612:70339-70358 None:intergenic 55.0%
! TTCACTCTTGACGGATCCGG+TGG - tig0020612:70357-70376 Msa1383780:CDS 55.0%
GTAGTTCCACAAGGTGGCTC+CGG - tig0020612:70432-70451 Msa1383780:CDS 55.0%
TTATCACCGGAGCCACCTTG+TGG + tig0020612:70441-70460 None:intergenic 55.0%
CGCGTGTCCTTCAGAGCTTA+AGG - tig0020612:70497-70516 Msa1383780:intron 55.0%
TATTGTTGCAGCGGCGCGTA+TGG - tig0020612:70588-70607 Msa1383780:intron 55.0%
CCTTGGGCTGTTGTTAGTGG+AGG + tig0020612:70754-70773 None:intergenic 55.0%
CCTCCACTAACAACAGCCCA+AGG - tig0020612:70751-70770 Msa1383780:intron 55.0%
GGGTAATATGACCCGACCCA+TGG - tig0020612:71007-71026 Msa1383780:intron 55.0%
CACCCGTTGAGAGTAGAAGC+GGG + tig0020612:71209-71228 None:intergenic 55.0%
CTACTCTCAACGGGTGACGT+CGG - tig0020612:71213-71232 Msa1383780:intron 55.0%
TGTACGTACACCGACGACAG+TGG + tig0020612:71268-71287 None:intergenic 55.0%
TGCCACGTCAGCATTCCGTT+TGG - tig0020612:72014-72033 Msa1383780:intron 55.0%
CCAGAGCCGTTGTTAAGCTG+AGG + tig0020612:73372-73391 None:intergenic 55.0%
CCTCAGCTTAACAACGGCTC+TGG - tig0020612:73369-73388 Msa1383780:CDS 55.0%
GGCTCAATGGTGTACGTTGG+TGG - tig0020612:73390-73409 Msa1383780:CDS 55.0%
GGGCCACGTGTATCAATGTG+TGG - tig0020612:73436-73455 Msa1383780:CDS 55.0%
GAGCCACATAGCCGTTGTGA+TGG + tig0020612:73481-73500 None:intergenic 55.0%
! CCGGCGTTGGAGAGAATTCC+CGG + tig0020612:70126-70145 None:intergenic 60.0%
CCGGGAATTCTCTCCAACGC+CGG - tig0020612:70123-70142 Msa1383780:three_prime_UTR 60.0%
GTTGCACCGCTTCCAACCAC+CGG - tig0020612:70147-70166 Msa1383780:three_prime_UTR 60.0%
AATCACCCCACCCGCTTCCT+GGG - tig0020612:70200-70219 Msa1383780:three_prime_UTR 60.0%
TTCCTGGGGAGGCCGTTTCT+GGG - tig0020612:70215-70234 Msa1383780:three_prime_UTR 60.0%
! AGAGAGTGCGGCCCCAGAAA+CGG + tig0020612:70230-70249 None:intergenic 60.0%
! CCCGGAGCATTCGACTTTGC+CGG + tig0020612:70304-70323 None:intergenic 60.0%
CCGGCAAAGTCGAATGCTCC+GGG - tig0020612:70301-70320 Msa1383780:CDS 60.0%
CGTGGATGGGAAAGAGAGCG+TGG - tig0020612:70527-70546 Msa1383780:intron 60.0%
TACGCGTAGCTATACGCGCG+TGG + tig0020612:70669-70688 None:intergenic 60.0%
TGACGTCGGCGCCGTAATCA+TGG - tig0020612:71227-71246 Msa1383780:intron 60.0%
TACACCGACGACAGTGGCGT+GGG + tig0020612:71262-71281 None:intergenic 60.0%
GGTTGGAAGCGGTGCAACGC+CGG + tig0020612:70145-70164 None:intergenic 65.0%
CAATCACCCCACCCGCTTCC+TGG - tig0020612:70199-70218 Msa1383780:three_prime_UTR 65.0%
ATCACCCCACCCGCTTCCTG+GGG - tig0020612:70201-70220 Msa1383780:three_prime_UTR 65.0%
AAACGGCCTCCCCAGGAAGC+GGG + tig0020612:70213-70232 None:intergenic 65.0%
GAAACGGCCTCCCCAGGAAG+CGG + tig0020612:70214-70233 None:intergenic 65.0%
CTTCCTGGGGAGGCCGTTTC+TGG - tig0020612:70214-70233 Msa1383780:three_prime_UTR 65.0%
TCCTGGGGAGGCCGTTTCTG+GGG - tig0020612:70216-70235 Msa1383780:three_prime_UTR 65.0%
!! GTGAGCAGGGATGGTGGTGG+CGG + tig0020612:71102-71121 None:intergenic 65.0%
! GTGGTGAGCAGGGATGGTGG+TGG + tig0020612:71105-71124 None:intergenic 65.0%
TCGGTGGTGAGCAGGGATGG+TGG + tig0020612:71108-71127 None:intergenic 65.0%
TGGTCGGTGGTGAGCAGGGA+TGG + tig0020612:71111-71130 None:intergenic 65.0%
CCTTCCCACGCCACTGTCGT+CGG - tig0020612:71255-71274 Msa1383780:intron 65.0%
GTACACCGACGACAGTGGCG+TGG + tig0020612:71263-71282 None:intergenic 65.0%
AAGCGGTGCAACGCCGGCGT+TGG + tig0020612:70139-70158 None:intergenic 70.0%
!! CGGTGGTGTTGCGCCGTTCC+CGG + tig0020612:70322-70341 None:intergenic 70.0%
CGGGAACGGCGCAACACCAC+CGG - tig0020612:70320-70339 Msa1383780:CDS 70.0%
CCGACGACAGTGGCGTGGGA+AGG + tig0020612:71258-71277 None:intergenic 70.0%
ACCCCACCCGCTTCCTGGGG+AGG - tig0020612:70204-70223 Msa1383780:three_prime_UTR 75.0%
GCCTCCCCAGGAAGCGGGTG+GGG + tig0020612:70208-70227 None:intergenic 75.0%
GGCCTCCCCAGGAAGCGGGT+GGG + tig0020612:70209-70228 None:intergenic 75.0%
GCCCCAGAAACGGCCTCCCC+AGG + tig0020612:70220-70239 None:intergenic 75.0%
! CGGCCTCCCCAGGAAGCGGG+TGG + tig0020612:70210-70229 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0020612 gene 69872 73893 69872 ID=Msa1383780;Name=Msa1383780
tig0020612 mRNA 69872 73893 69872 ID=Msa1383780-mRNA-1;Parent=Msa1383780;Name=Msa1383780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=134|0|0.66|1|1|1|3|369|351
tig0020612 exon 69872 70451 69872 ID=Msa1383780-mRNA-1:exon:8783;Parent=Msa1383780-mRNA-1
tig0020612 exon 72240 72317 72240 ID=Msa1383780-mRNA-1:exon:8782;Parent=Msa1383780-mRNA-1
tig0020612 exon 72993 73893 72993 ID=Msa1383780-mRNA-1:exon:8781;Parent=Msa1383780-mRNA-1
tig0020612 five_prime_UTR 73760 73893 73760 ID=Msa1383780-mRNA-1:five_prime_utr;Parent=Msa1383780-mRNA-1
tig0020612 CDS 72993 73759 72993 ID=Msa1383780-mRNA-1:cds;Parent=Msa1383780-mRNA-1
tig0020612 CDS 72240 72317 72240 ID=Msa1383780-mRNA-1:cds;Parent=Msa1383780-mRNA-1
tig0020612 CDS 70241 70451 70241 ID=Msa1383780-mRNA-1:cds;Parent=Msa1383780-mRNA-1
tig0020612 three_prime_UTR 69872 70240 69872 ID=Msa1383780-mRNA-1:three_prime_utr;Parent=Msa1383780-mRNA-1
Gene Sequence

>Msa1383780

ATGGATCAACTAAGTACTAAATTATTTTCAATTTTCCTTATCATACTTAATCTTTCAATATCAGGGGTATTATCAACAACATTCACACTCGTTAACAAATGCAACTACACAGTCTGGCCGGGAATTCTCTCCAACGCCGGCGTTGCACCGCTTCCAACCACCGGTTTCGTTCTTCAATCCGGCGACTCCAAATCAATCACCCCACCCGCTTCCTGGGGAGGCCGTTTCTGGGGCCGCACTCTCTGTTCCCAAGACTCCACCGGAAAATTCTCATGTCTTACCGGCGATTGTAACTCCGGCAAAGTCGAATGCTCCGGGAACGGCGCAACACCACCGGCTACCTTAGCGGAATTCACTCTTGACGGATCCGGTGGACTCGATTTCTTCGACGTGAGTTTAGTTGACGGTTACAACGTTCCAATGCTTGTAGTTCCACAAGGTGGCTCCGGTGATAACTGTACGAATACCGGTTGTATCGGGGATTTGCTCGGCGCGTGTCCTTCAGAGCTTAAGGTTACGAGCGTGGATGGGAAAGAGAGCGTGGCGTGTAAAAGTGCTTGTGAGGCGTTTGGAACGGCACAATATTGTTGCAGCGGCGCGTATGGTTCACCTAACACTTGTAAACCTTCGAGTTATTCTGAGTTGTTTAAAAGTGCTTGTCCACGCGCGTATAGCTACGCGTACGACGATAAGACAAGCACGTTTACATGTGCTTCTGCGGCTGAATACACAATCACTTTTTGCTCCTCCACTAACAACAGCCCAAGACCGATTCTTGATGTTAGAGGAAAGAAACTTTGGGAGCTTGTTGTTTGTGATAAATCTCTTTCACTTCAATATGCTAATCAAAAGTCGTGGCAGGGACAAAATCCGAAATCAGATGGCAGTGACTCATCATCGCCTCAGCTTAACAACGGCTCTGGCTCAATGGTGTACGTTGGTGGCTTTGATCAGAGTGAAATATCATGGGCCACGTGTATCAATGTGTGGAAATCCCAAACTATTCTTACCATCACAACGGCTATGTGGCTCCTGTGTCAGCTTTTCCACTTCTAA
Protein sequence

>Msa1383780

MDQLSTKLFSIFLIILNLSISGVLSTTFTLVNKCNYTVWPGILSNAGVAPLPTTGFVLQSGDSKSITPPASWGGRFWGRTLCSQDSTGKFSCLTGDCNSGKVECSGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNVPMLVVPQGGSGDNCTNTGCIGDLLGACPSELKVTSVDGKESVACKSACEAFGTAQYCCSGAYGSPNTCKPSSYSELFKSACPRAYSYAYDDKTSTFTCASAAEYTITFCSSTNNSPRPILDVRGKKLWELVVCDKSLSLQYANQKSWQGQNPKSDGSDSSSPQLNNGSGSMVYVGGFDQSEISWATCINVWKSQTILTITTAMWLLCQLFHF*