Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346000 | XP_024635613.2 | 97.239 | 326 | 8 | 1 | 1 | 325 | 1 | 326 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346000 | sp|Q9FF29|PR5K_ARATH | 53.360 | 253 | 116 | 2 | 11 | 261 | 10 | 262 | 3.04e-92 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346000 | A0A396IZC8 | 97.239 | 326 | 8 | 1 | 1 | 325 | 1 | 326 | 0.0 | 641 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1346000 | Msa1383780 | 0.878043 | 3.863465e-69 | -8.615850e-47 |
| Msa0654020 | Msa1346000 | -0.822223 | 2.656674e-53 | -8.615850e-47 |
| Msa0736500 | Msa1346000 | 0.802699 | 4.957362e-49 | -8.615850e-47 |
| Msa0795890 | Msa1346000 | 0.811479 | 6.858568e-51 | -8.615850e-47 |
| Msa0833670 | Msa1346000 | 0.810066 | 1.386284e-50 | -8.615850e-47 |
| Msa0385330 | Msa1346000 | 0.930729 | 1.071679e-93 | -8.615850e-47 |
| Msa1105270 | Msa1346000 | -0.807093 | 5.982597e-50 | -8.615850e-47 |
| Msa1132860 | Msa1346000 | 0.809156 | 2.175138e-50 | -8.615850e-47 |
| Msa0523070 | Msa1346000 | 0.940333 | 2.790584e-100 | -8.615850e-47 |
| Msa0580390 | Msa1346000 | 0.810680 | 1.022068e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346000 | MtrunA17_Chr3g0142781 | 97.239 | 326 | 8 | 1 | 1 | 325 | 1 | 326 | 0.0 | 641 |
| Msa1346000 | MtrunA17_Chr1g0156711 | 74.772 | 329 | 71 | 7 | 1 | 323 | 1 | 323 | 3.88e-172 | 480 |
| Msa1346000 | MtrunA17_Chr5g0405581 | 67.816 | 261 | 79 | 4 | 8 | 265 | 8 | 266 | 4.12e-119 | 345 |
| Msa1346000 | MtrunA17_Chr8g0352471 | 66.798 | 253 | 79 | 4 | 9 | 259 | 9 | 258 | 5.35e-115 | 335 |
| Msa1346000 | MtrunA17_Chr8g0371781 | 67.857 | 252 | 73 | 4 | 19 | 265 | 21 | 269 | 6.22e-114 | 332 |
| Msa1346000 | MtrunA17_Chr8g0357311 | 66.667 | 240 | 76 | 3 | 10 | 248 | 10 | 246 | 3.53e-111 | 323 |
| Msa1346000 | MtrunA17_Chr4g0037351 | 62.963 | 243 | 87 | 3 | 8 | 248 | 6 | 247 | 1.79e-105 | 311 |
| Msa1346000 | MtrunA17_Chr4g0037331 | 53.952 | 291 | 125 | 6 | 1 | 291 | 1 | 282 | 4.22e-96 | 288 |
| Msa1346000 | MtrunA17_Chr8g0371771 | 57.724 | 246 | 94 | 5 | 3 | 248 | 8 | 243 | 1.52e-91 | 275 |
| Msa1346000 | MtrunA17_Chr7g0265011 | 52.988 | 251 | 114 | 4 | 1 | 251 | 43 | 289 | 2.73e-89 | 268 |
| Msa1346000 | MtrunA17_Chr5g0405611 | 54.851 | 268 | 108 | 7 | 14 | 279 | 82 | 338 | 2.26e-87 | 267 |
| Msa1346000 | MtrunA17_Chr5g0428801 | 52.400 | 250 | 113 | 5 | 7 | 253 | 8 | 254 | 3.65e-85 | 259 |
| Msa1346000 | MtrunA17_Chr2g0311561 | 55.217 | 230 | 99 | 3 | 20 | 248 | 5 | 231 | 2.91e-84 | 256 |
| Msa1346000 | MtrunA17_Chr2g0311521 | 53.307 | 257 | 111 | 6 | 11 | 262 | 8 | 260 | 1.04e-83 | 272 |
| Msa1346000 | MtrunA17_Chr1g0180121 | 52.049 | 244 | 110 | 4 | 9 | 248 | 1 | 241 | 1.63e-80 | 244 |
| Msa1346000 | MtrunA17_Chr2g0312181 | 51.046 | 239 | 114 | 3 | 11 | 248 | 6 | 242 | 7.14e-80 | 243 |
| Msa1346000 | MtrunA17_Chr8g0351851 | 51.837 | 245 | 110 | 6 | 4 | 248 | 1 | 237 | 1.16e-79 | 242 |
| Msa1346000 | MtrunA17_Chr1g0180221 | 50.593 | 253 | 119 | 4 | 1 | 250 | 34 | 283 | 2.36e-78 | 241 |
| Msa1346000 | MtrunA17_Chr1g0179851 | 52.049 | 244 | 108 | 5 | 11 | 250 | 2 | 240 | 3.98e-78 | 238 |
| Msa1346000 | MtrunA17_Chr1g0179891 | 52.459 | 244 | 109 | 5 | 7 | 250 | 2 | 238 | 5.46e-78 | 238 |
| Msa1346000 | MtrunA17_Chr6g0482741 | 50.000 | 242 | 116 | 4 | 7 | 248 | 3 | 239 | 1.08e-77 | 237 |
| Msa1346000 | MtrunA17_Chr2g0311551 | 51.429 | 245 | 113 | 5 | 20 | 262 | 17 | 257 | 1.30e-77 | 256 |
| Msa1346000 | MtrunA17_Chr1g0154591 | 54.430 | 237 | 98 | 7 | 16 | 248 | 1 | 231 | 1.69e-77 | 236 |
| Msa1346000 | MtrunA17_Chr1g0180231 | 52.439 | 246 | 112 | 4 | 5 | 250 | 3 | 243 | 2.03e-77 | 237 |
| Msa1346000 | MtrunA17_Chr1g0179871 | 52.439 | 246 | 112 | 4 | 5 | 250 | 3 | 243 | 2.03e-77 | 237 |
| Msa1346000 | MtrunA17_Chr1g0180161 | 54.018 | 224 | 100 | 3 | 29 | 252 | 25 | 245 | 2.45e-77 | 237 |
| Msa1346000 | MtrunA17_Chr3g0141341 | 54.464 | 224 | 96 | 6 | 26 | 248 | 12 | 230 | 4.43e-73 | 225 |
| Msa1346000 | MtrunA17_Chr8g0392961 | 48.980 | 245 | 120 | 4 | 4 | 248 | 5 | 244 | 5.62e-72 | 223 |
| Msa1346000 | MtrunA17_Chr6g0452331 | 46.063 | 254 | 128 | 7 | 1 | 248 | 1 | 251 | 1.86e-65 | 207 |
| Msa1346000 | MtrunA17_Chr3g0112091 | 47.500 | 240 | 119 | 7 | 11 | 248 | 2 | 236 | 3.10e-64 | 203 |
| Msa1346000 | MtrunA17_Chr5g0424221 | 45.749 | 247 | 122 | 8 | 3 | 249 | 6 | 240 | 1.89e-62 | 200 |
| Msa1346000 | MtrunA17_Chr7g0239131 | 46.988 | 249 | 123 | 7 | 1 | 248 | 1 | 241 | 2.61e-62 | 198 |
| Msa1346000 | MtrunA17_Chr4g0031221 | 43.621 | 243 | 125 | 8 | 11 | 249 | 18 | 252 | 7.27e-60 | 192 |
| Msa1346000 | MtrunA17_Chr2g0311531 | 46.581 | 234 | 95 | 8 | 21 | 253 | 22 | 226 | 1.22e-58 | 189 |
| Msa1346000 | MtrunA17_Chr5g0406771 | 51.429 | 175 | 80 | 3 | 16 | 187 | 3 | 175 | 6.14e-53 | 172 |
| Msa1346000 | MtrunA17_Chr5g0397831 | 41.935 | 248 | 115 | 8 | 9 | 248 | 9 | 235 | 2.20e-51 | 170 |
| Msa1346000 | MtrunA17_Chr2g0311501 | 45.503 | 189 | 94 | 7 | 69 | 253 | 3 | 186 | 4.21e-49 | 162 |
| Msa1346000 | MtrunA17_Chr5g0397821 | 39.111 | 225 | 113 | 7 | 25 | 248 | 23 | 224 | 3.28e-45 | 154 |
| Msa1346000 | MtrunA17_Chr8g0386341 | 38.618 | 246 | 123 | 9 | 6 | 248 | 27 | 247 | 1.68e-44 | 152 |
| Msa1346000 | MtrunA17_Chr2g0309611 | 31.641 | 256 | 159 | 6 | 1 | 247 | 1 | 249 | 1.54e-39 | 139 |
| Msa1346000 | MtrunA17_Chr1g0179911 | 30.116 | 259 | 149 | 9 | 2 | 250 | 3 | 239 | 6.34e-30 | 114 |
| Msa1346000 | MtrunA17_Chr8g0386351 | 42.958 | 142 | 67 | 6 | 1 | 141 | 43 | 171 | 9.96e-26 | 102 |
| Msa1346000 | MtrunA17_Chr1g0180181 | 55.814 | 86 | 37 | 1 | 167 | 252 | 18 | 102 | 1.65e-24 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346000 | AT1G75800.1 | 60.299 | 335 | 114 | 5 | 4 | 325 | 1 | 329 | 1.50e-136 | 390 |
| Msa1346000 | AT1G20030.2 | 64.052 | 306 | 102 | 4 | 22 | 325 | 16 | 315 | 5.90e-133 | 381 |
| Msa1346000 | AT1G20030.1 | 63.816 | 304 | 102 | 4 | 24 | 325 | 1 | 298 | 1.77e-131 | 377 |
| Msa1346000 | AT4G36010.1 | 63.060 | 268 | 84 | 7 | 22 | 278 | 19 | 282 | 1.95e-110 | 323 |
| Msa1346000 | AT4G36010.2 | 63.060 | 268 | 84 | 7 | 22 | 278 | 19 | 282 | 1.95e-110 | 323 |
| Msa1346000 | AT2G17860.1 | 63.265 | 245 | 85 | 4 | 10 | 250 | 7 | 250 | 1.17e-104 | 307 |
| Msa1346000 | AT4G38670.3 | 54.035 | 285 | 120 | 4 | 4 | 287 | 1 | 275 | 2.05e-104 | 307 |
| Msa1346000 | AT4G38670.1 | 54.035 | 285 | 120 | 4 | 4 | 287 | 1 | 275 | 2.05e-104 | 307 |
| Msa1346000 | AT4G38670.2 | 62.609 | 230 | 85 | 1 | 20 | 248 | 1 | 230 | 1.23e-102 | 302 |
| Msa1346000 | AT4G38660.1 | 55.720 | 271 | 109 | 5 | 3 | 273 | 7 | 266 | 6.15e-95 | 285 |
| Msa1346000 | AT4G24180.1 | 57.407 | 270 | 100 | 5 | 12 | 275 | 19 | 279 | 1.03e-93 | 281 |
| Msa1346000 | AT4G24180.2 | 56.115 | 278 | 107 | 5 | 4 | 275 | 6 | 274 | 1.29e-93 | 281 |
| Msa1346000 | AT5G38280.1 | 53.360 | 253 | 116 | 2 | 11 | 261 | 10 | 262 | 3.09e-93 | 291 |
| Msa1346000 | AT4G38660.2 | 58.661 | 254 | 94 | 5 | 20 | 273 | 2 | 244 | 5.22e-93 | 280 |
| Msa1346000 | AT5G38280.2 | 53.360 | 253 | 116 | 2 | 11 | 261 | 10 | 262 | 6.46e-93 | 290 |
| Msa1346000 | AT4G24180.6 | 59.592 | 245 | 87 | 4 | 12 | 250 | 19 | 257 | 1.88e-92 | 276 |
| Msa1346000 | AT4G24180.5 | 58.103 | 253 | 94 | 4 | 4 | 250 | 6 | 252 | 2.05e-92 | 276 |
| Msa1346000 | AT4G24180.3 | 58.333 | 228 | 84 | 3 | 12 | 233 | 19 | 241 | 2.06e-84 | 258 |
| Msa1346000 | AT4G24180.4 | 56.780 | 236 | 91 | 3 | 4 | 233 | 6 | 236 | 2.84e-84 | 257 |
| Msa1346000 | AT5G24620.1 | 50.368 | 272 | 118 | 6 | 13 | 279 | 12 | 271 | 5.73e-82 | 254 |
| Msa1346000 | AT5G24620.4 | 50.368 | 272 | 118 | 6 | 13 | 279 | 67 | 326 | 1.42e-81 | 255 |
| Msa1346000 | AT5G24620.3 | 50.368 | 272 | 118 | 6 | 13 | 279 | 88 | 347 | 1.55e-81 | 256 |
| Msa1346000 | AT1G19320.1 | 54.618 | 249 | 102 | 7 | 5 | 249 | 6 | 247 | 9.42e-81 | 246 |
| Msa1346000 | AT1G75040.1 | 54.321 | 243 | 102 | 7 | 6 | 248 | 5 | 238 | 1.31e-79 | 243 |
| Msa1346000 | AT1G75050.1 | 51.822 | 247 | 114 | 5 | 6 | 252 | 5 | 246 | 1.75e-79 | 242 |
| Msa1346000 | AT1G75030.1 | 51.020 | 245 | 112 | 7 | 7 | 248 | 3 | 242 | 1.61e-76 | 235 |
| Msa1346000 | AT1G18250.2 | 51.092 | 229 | 107 | 4 | 25 | 253 | 21 | 244 | 1.32e-74 | 230 |
| Msa1346000 | AT1G18250.1 | 51.092 | 229 | 107 | 4 | 25 | 253 | 20 | 243 | 1.66e-74 | 229 |
| Msa1346000 | AT1G73620.1 | 51.786 | 224 | 103 | 4 | 25 | 248 | 41 | 259 | 3.40e-73 | 227 |
| Msa1346000 | AT1G77700.3 | 48.207 | 251 | 110 | 9 | 4 | 250 | 39 | 273 | 1.95e-68 | 217 |
| Msa1346000 | AT2G28790.2 | 46.640 | 253 | 127 | 7 | 1 | 249 | 26 | 274 | 2.81e-68 | 215 |
| Msa1346000 | AT1G77700.2 | 47.600 | 250 | 119 | 8 | 4 | 253 | 39 | 276 | 3.07e-68 | 216 |
| Msa1346000 | AT2G28790.1 | 46.640 | 253 | 127 | 7 | 1 | 249 | 1 | 249 | 3.36e-68 | 214 |
| Msa1346000 | AT1G77700.1 | 50.000 | 230 | 95 | 9 | 25 | 250 | 88 | 301 | 6.19e-66 | 211 |
| Msa1346000 | AT5G40020.1 | 45.059 | 253 | 132 | 6 | 1 | 250 | 1 | 249 | 4.63e-63 | 201 |
| Msa1346000 | AT4G18253.1 | 42.742 | 248 | 132 | 4 | 4 | 250 | 1 | 239 | 1.38e-62 | 199 |
| Msa1346000 | AT4G36000.2 | 52.444 | 225 | 82 | 8 | 102 | 323 | 1 | 203 | 3.90e-62 | 197 |
| Msa1346000 | AT4G36000.1 | 52.444 | 225 | 82 | 8 | 102 | 323 | 1 | 203 | 3.90e-62 | 197 |
| Msa1346000 | AT1G70250.1 | 44.770 | 239 | 119 | 6 | 24 | 256 | 143 | 374 | 4.68e-61 | 208 |
| Msa1346000 | AT4G18250.1 | 42.294 | 279 | 151 | 6 | 11 | 287 | 41 | 311 | 2.67e-60 | 204 |
| Msa1346000 | AT5G02140.2 | 45.082 | 244 | 128 | 6 | 6 | 248 | 2 | 240 | 3.09e-60 | 193 |
| Msa1346000 | AT5G02140.1 | 45.082 | 244 | 128 | 6 | 6 | 248 | 2 | 240 | 4.06e-60 | 194 |
| Msa1346000 | AT4G11650.1 | 40.244 | 246 | 122 | 8 | 4 | 248 | 1 | 222 | 5.37e-48 | 162 |
| Msa1346000 | AT5G24620.2 | 49.682 | 157 | 64 | 4 | 133 | 285 | 15 | 160 | 3.58e-39 | 140 |
| Msa1346000 | AT2G24810.1 | 58.025 | 81 | 31 | 2 | 169 | 249 | 116 | 193 | 4.46e-23 | 95.1 |
Find 131 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTGGGGAGGCCGTTTC+TGG | -0.052359 | tig0008063:-10213 | Msa1346000:CDS |
| TTCTTTCTTCTGTGGTAATT+TGG | 0.105512 | tig0008063:+10527 | Msa1346000:intergenic |
| TGCTCCATTTACTTCATTTA+AGG | 0.112130 | tig0008063:-8083 | Msa1346000:three_prime_UTR |
| ATACTTAATCTTTCAATATC+AGG | 0.208828 | tig0008063:-10379 | Msa1346000:CDS |
| GCCACGTTTCCCACCAAATT+AGG | 0.242961 | tig0008063:-8277 | Msa1346000:three_prime_UTR |
| CGTGGCTCATGAACCTAATT+TGG | 0.261252 | tig0008063:+8264 | Msa1346000:intergenic |
| TCTTTCTTCTGTGGTAATTT+GGG | 0.261573 | tig0008063:+10528 | Msa1346000:intergenic |
| TTTAATTCATTATGCCTTCA+TGG | 0.275523 | tig0008063:-8200 | Msa1346000:three_prime_UTR |
| CAATCACCCCACCCGCTTCC+TGG | 0.293774 | tig0008063:-10228 | Msa1346000:CDS |
| CGGTGGTGTTGCGCCGTTCC+CGG | 0.299087 | tig0008063:+10108 | Msa1346000:intergenic |
| GTACGAATACCGGTTGTATC+AGG | 0.300485 | tig0008063:-9964 | Msa1346000:CDS |
| CAAACCTTAAATGAAGTAAA+TGG | 0.309180 | tig0008063:+8079 | Msa1346000:intergenic |
| TTCCTGGGGAGGCCGTTTCT+GGG | 0.311657 | tig0008063:-10212 | Msa1346000:CDS |
| AGCGGGTGGGGTGATTGATT+TGG | 0.328396 | tig0008063:+10234 | Msa1346000:intergenic |
| GAGTCACTGCCATCTGATTT+CGG | 0.335928 | tig0008063:+8497 | Msa1346000:intergenic |
| CCCGGAGCATTCGACTTTGC+CGG | 0.336054 | tig0008063:+10126 | Msa1346000:intergenic |
| CATTTACTTCATTTAAGGTT+TGG | 0.344667 | tig0008063:-8078 | Msa1346000:three_prime_UTR |
| CCGGCGTTGGAGAGAATTCC+CGG | 0.381681 | tig0008063:+10304 | Msa1346000:intergenic |
| TCACCTTGGGCTGTTGTTAG+TGG | 0.384731 | tig0008063:+9673 | Msa1346000:intergenic |
| TTGTGATGGTAAGAATAGTT+TGG | 0.385951 | tig0008063:+8372 | Msa1346000:intergenic |
| AATGAATTAAACAATGGATT+AGG | 0.389652 | tig0008063:+8212 | Msa1346000:intergenic |
| GGAAAATTCTCATGTCTTAC+CGG | 0.390131 | tig0008063:-10160 | Msa1346000:CDS |
| TGTGATGGTAAGAATAGTTT+GGG | 0.391149 | tig0008063:+8373 | Msa1346000:intergenic |
| GCCTCCCCAGGAAGCGGGTG+GGG | 0.392476 | tig0008063:+10222 | Msa1346000:intergenic |
| TGTTGTGATATGAGAGAAGA+AGG | 0.399923 | tig0008063:+7955 | Msa1346000:intergenic |
| GTAACCAGTTATAGCATTAC+CGG | 0.401599 | tig0008063:+8112 | Msa1346000:intergenic |
| AATCACCCCACCCGCTTCCT+GGG | 0.417844 | tig0008063:-10227 | Msa1346000:CDS |
| CTACGCCTAAAACAATTGCT+TGG | 0.419389 | tig0008063:-8237 | Msa1346000:three_prime_UTR |
| TACGCCTAAAACAATTGCTT+GGG | 0.426462 | tig0008063:-8236 | Msa1346000:three_prime_UTR |
| TTTCCCTCAAAACTAGGTTA+AGG | 0.429188 | tig0008063:-8301 | Msa1346000:three_prime_UTR |
| CGCGTGTCCTTCAGAGCTTA+AGG | 0.433220 | tig0008063:-9930 | Msa1346000:CDS |
| TACTTAATCTTTCAATATCA+GGG | 0.436205 | tig0008063:-10378 | Msa1346000:CDS |
| ACCGGTTTCGTTCTTCAATC+CGG | 0.449618 | tig0008063:-10262 | Msa1346000:CDS |
| TATTGTTGCAGCGGCGCGTA+TGG | 0.455532 | tig0008063:-9839 | Msa1346000:CDS |
| TTGCAGTCAAAAGTCGTGGC+AGG | 0.458754 | tig0008063:-8528 | Msa1346000:intron |
| CTTAAGGTTACGAGCGTGGA+TGG | 0.458977 | tig0008063:-9914 | Msa1346000:CDS |
| AACACCACCGGCTACCTTAG+TGG | 0.460962 | tig0008063:-10095 | Msa1346000:CDS |
| GCCCCAGAAACGGCCTCCCC+AGG | 0.462616 | tig0008063:+10210 | Msa1346000:intergenic |
| TTGATCAGAGTGAAATATCA+TGG | 0.466410 | tig0008063:-8421 | Msa1346000:CDS |
| CTCGAAGGTTTACAAGTGTT+AGG | 0.467705 | tig0008063:+9812 | Msa1346000:intergenic |
| TTGAAAGATTAAGTATGATA+AGG | 0.468373 | tig0008063:+10386 | Msa1346000:intergenic |
| AAAAGTGCTTGTGAGGCGTT+TGG | 0.468766 | tig0008063:-9872 | Msa1346000:CDS |
| CGGATATGTATGGGCCATGA+AGG | 0.481278 | tig0008063:+8186 | Msa1346000:intergenic |
| TTAGTGGAATTCACTCTTGA+CGG | 0.483339 | tig0008063:-10079 | Msa1346000:CDS |
| ATGCAACTACACAGTCTGGC+CGG | 0.486519 | tig0008063:-10323 | Msa1346000:CDS |
| GCAAGTTCTTCTTTCTTCTG+TGG | 0.490008 | tig0008063:+10519 | Msa1346000:intergenic |
| AGAGAGTGCGGCCCCAGAAA+CGG | 0.490637 | tig0008063:+10200 | Msa1346000:intergenic |
| AAGCGGTGCAACGCCGGCGT+TGG | 0.494696 | tig0008063:+10291 | Msa1346000:intergenic |
| TCCGGCAAAGTCGAATGCTC+CGG | 0.498921 | tig0008063:-10127 | Msa1346000:CDS |
| GGTTGGAAGCGGTGCAACGC+CGG | 0.499056 | tig0008063:+10285 | Msa1346000:intergenic |
| CGGGAACGGCGCAACACCAC+CGG | 0.499852 | tig0008063:-10107 | Msa1346000:CDS |
| ACCCCACCCGCTTCCTGGGG+AGG | 0.502582 | tig0008063:-10223 | Msa1346000:CDS |
| TAACAACGGCTCTGGCTCAA+TGG | 0.504154 | tig0008063:-8459 | Msa1346000:CDS |
| ACAAATGCAACTACACAGTC+TGG | 0.504490 | tig0008063:-10327 | Msa1346000:CDS |
| GTAGTTCCACAAGGTGGCTC+CGG | 0.507977 | tig0008063:-9995 | Msa1346000:CDS |
| GGCTCAATGGTGTACGTTGG+TGG | 0.508308 | tig0008063:-8446 | Msa1346000:CDS |
| GTTGCACCGCTTCCAACCAC+CGG | 0.509906 | tig0008063:-10280 | Msa1346000:CDS |
| CGGCCTCCCCAGGAAGCGGG+TGG | 0.513133 | tig0008063:+10220 | Msa1346000:intergenic |
| GCCGGATTGAAGAACGAAAC+CGG | 0.514473 | tig0008063:+10261 | Msa1346000:intergenic |
| GAAACGGCCTCCCCAGGAAG+CGG | 0.516631 | tig0008063:+10216 | Msa1346000:intergenic |
| GGCTCATGAACCTAATTTGG+TGG | 0.516773 | tig0008063:+8267 | Msa1346000:intergenic |
| CCGGCAAAGTCGAATGCTCC+GGG | 0.517602 | tig0008063:-10126 | Msa1346000:CDS |
| AAACGGCCTCCCCAGGAAGC+GGG | 0.522887 | tig0008063:+10217 | Msa1346000:intergenic |
| GGTGATAACTGTACGAATAC+CGG | 0.523090 | tig0008063:-9974 | Msa1346000:CDS |
| GAATTCACTCTTGACGGATC+CGG | 0.524780 | tig0008063:-10073 | Msa1346000:CDS |
| TTCGACGTGAGTTTAGTTGA+CGG | 0.526291 | tig0008063:-10037 | Msa1346000:CDS |
| CCTTGTGGAACTACAAGCAT+TGG | 0.527175 | tig0008063:+10004 | Msa1346000:intergenic |
| TAAGTTCTTATATCATTACA+TGG | 0.530345 | tig0008063:-10440 | Msa1346000:exon |
| CCTCAGCTTAACAACGGCTC+TGG | 0.530822 | tig0008063:-8467 | Msa1346000:CDS |
| TCCTGGGGAGGCCGTTTCTG+GGG | 0.533325 | tig0008063:-10211 | Msa1346000:CDS |
| TGCAACTACACAGTCTGGCC+GGG | 0.533665 | tig0008063:-10322 | Msa1346000:CDS |
| CCTTGGGCTGTTGTTAGTGG+AGG | 0.540523 | tig0008063:+9676 | Msa1346000:intergenic |
| GAGCAAATCCCTGATACAAC+CGG | 0.543946 | tig0008063:+9955 | Msa1346000:intergenic |
| GGTGATTGATTTGGAGTCGC+CGG | 0.547268 | tig0008063:+10243 | Msa1346000:intergenic |
| TGCTTGTGAGGCGTTTGGAA+CGG | 0.555408 | tig0008063:-9867 | Msa1346000:CDS |
| CTCTGTTCCCAAGACTCCAC+CGG | 0.561123 | tig0008063:-10181 | Msa1346000:CDS |
| CTCGTAACCTTAAGCTCTGA+AGG | 0.561863 | tig0008063:+9923 | Msa1346000:intergenic |
| CACGTTTACATGTGCTTCTG+CGG | 0.562492 | tig0008063:-9723 | Msa1346000:CDS |
| AAAGTCGAATGCTCCGGGAA+CGG | 0.563096 | tig0008063:-10121 | Msa1346000:CDS |
| ACGAAACCGGTGGTTGGAAG+CGG | 0.564357 | tig0008063:+10274 | Msa1346000:intergenic |
| GGCCTCCCCAGGAAGCGGGT+GGG | 0.565175 | tig0008063:+10221 | Msa1346000:intergenic |
| TTCACTCTTGACGGATCCGG+TGG | 0.567093 | tig0008063:-10070 | Msa1346000:CDS |
| ACCTAATTTGGTGGGAAACG+TGG | 0.570452 | tig0008063:+8276 | Msa1346000:intergenic |
| ATCACCCCACCCGCTTCCTG+GGG | 0.571380 | tig0008063:-10226 | Msa1346000:CDS |
| AGAGCTTAAGGTTACGAGCG+TGG | 0.575561 | tig0008063:-9918 | Msa1346000:CDS |
| TACGAATACCGGTTGTATCA+GGG | 0.577024 | tig0008063:-9963 | Msa1346000:CDS |
| TGCAGTCAAAAGTCGTGGCA+GGG | 0.577535 | tig0008063:-8527 | Msa1346000:intron |
| GTGAATTCCACTAAGGTAGC+CGG | 0.579436 | tig0008063:+10088 | Msa1346000:intergenic |
| TGAAGAACGAAACCGGTGGT+TGG | 0.582201 | tig0008063:+10268 | Msa1346000:intergenic |
| GTCAAGAGTGAATTCCACTA+AGG | 0.584419 | tig0008063:+10081 | Msa1346000:intergenic |
| ATTTAAGGTTTGGAGACATG+TGG | 0.585320 | tig0008063:-8068 | Msa1346000:three_prime_UTR |
| GGACAAAATCCGAAATCAGA+TGG | 0.593450 | tig0008063:-8506 | Msa1346000:CDS |
| TAACCAGTTATAGCATTACC+GGG | 0.594563 | tig0008063:+8113 | Msa1346000:intergenic |
| TTACCATCACAACGGCTATG+TGG | 0.600620 | tig0008063:-8361 | Msa1346000:CDS |
| CCGGGAATTCTCTCCAACGC+CGG | 0.602290 | tig0008063:-10304 | Msa1346000:CDS |
| CTTACCGGCGATTGTAACTC+CGG | 0.603049 | tig0008063:-10145 | Msa1346000:CDS |
| GAGCCACATAGCCGTTGTGA+TGG | 0.604066 | tig0008063:+8358 | Msa1346000:intergenic |
| TGATCAGAGTGAAATATCAT+GGG | 0.606552 | tig0008063:-8420 | Msa1346000:CDS |
| TTAAGGTTACGAGCGTGGAT+GGG | 0.608209 | tig0008063:-9913 | Msa1346000:CDS |
| AACAACTCAGAATAACTCGA+AGG | 0.608498 | tig0008063:+9797 | Msa1346000:intergenic |
| GGTTGTATCAGGGATTTGCT+CGG | 0.611595 | tig0008063:-9953 | Msa1346000:CDS |
| CCAATGCTTGTAGTTCCACA+AGG | 0.616622 | tig0008063:-10004 | Msa1346000:CDS |
| GTTGTGATATGAGAGAAGAA+GGG | 0.617376 | tig0008063:+7956 | Msa1346000:intergenic |
| GCTCATGAACCTAATTTGGT+GGG | 0.618681 | tig0008063:+8268 | Msa1346000:intergenic |
| ACTTAATCTTTCAATATCAG+GGG | 0.619589 | tig0008063:-10377 | Msa1346000:CDS |
| TTATCACCGGAGCCACCTTG+TGG | 0.619692 | tig0008063:+9989 | Msa1346000:intergenic |
| AGGCATAATGAATTAAACAA+TGG | 0.622637 | tig0008063:+8206 | Msa1346000:intergenic |
| TCAACACAGTGAAGATCCCC+CGG | 0.623518 | tig0008063:-8131 | Msa1346000:three_prime_UTR |
| TTTGCCGGAGTTACAATCGC+CGG | 0.625708 | tig0008063:+10141 | Msa1346000:intergenic |
| ACGGCACAATATTGTTGCAG+CGG | 0.630605 | tig0008063:-9848 | Msa1346000:CDS |
| GTCGAAGAAATCGAGTCCAC+CGG | 0.632997 | tig0008063:+10054 | Msa1346000:intergenic |
| CCAGAGCCGTTGTTAAGCTG+AGG | 0.634119 | tig0008063:+8467 | Msa1346000:intergenic |
| TCTGGCTCAATGGTGTACGT+TGG | 0.639261 | tig0008063:-8449 | Msa1346000:CDS |
| GGCGTGTAAAAGTGCTTGTG+AGG | 0.640993 | tig0008063:-9879 | Msa1346000:CDS |
| CATTTGATTAAACAAAACTG+TGG | 0.644215 | tig0008063:-8155 | Msa1346000:three_prime_UTR |
| CGTGGATGGGAAAGAGAGCG+TGG | 0.649504 | tig0008063:-9900 | Msa1346000:CDS |
| CCTCCACTAACAACAGCCCA+AGG | 0.650691 | tig0008063:-9676 | Msa1346000:intron |
| GGTATTCGTACAGTTATCAC+CGG | 0.657314 | tig0008063:+9976 | Msa1346000:intergenic |
| AGAAGTGGAAAAGCTGACAC+AGG | 0.666411 | tig0008063:+8336 | Msa1346000:intergenic |
| TTTCCACACATTGATACACG+TGG | 0.670795 | tig0008063:+8397 | Msa1346000:intergenic |
| AACTATTCTTACCATCACAA+CGG | 0.673194 | tig0008063:-8369 | Msa1346000:CDS |
| AGTCTTGGGAACAGAGAGTG+CGG | 0.677635 | tig0008063:+10188 | Msa1346000:intergenic |
| AATTCCACTAAGGTAGCCGG+TGG | 0.682245 | tig0008063:+10091 | Msa1346000:intergenic |
| AACCAGTTATAGCATTACCG+GGG | 0.684276 | tig0008063:+8114 | Msa1346000:intergenic |
| TCATCGCCTCAGCTTAACAA+CGG | 0.684947 | tig0008063:-8473 | Msa1346000:CDS |
| TAATGCTATAACTGGTTACG+AGG | 0.685018 | tig0008063:-8108 | Msa1346000:three_prime_UTR |
| GGGCCACGTGTATCAATGTG+TGG | 0.689160 | tig0008063:-8400 | Msa1346000:CDS |
| ATGCTTGTAGTTCCACAAGG+TGG | 0.691545 | tig0008063:-10001 | Msa1346000:CDS |
| TACGCGTAGCTATACGCGCG+TGG | 0.692773 | tig0008063:+9761 | Msa1345990:intergenic |
| ACCAGTTATAGCATTACCGG+GGG | 0.700155 | tig0008063:+8115 | Msa1345990:intergenic |
| GGATTGAAGAACGAAACCGG+TGG | 0.773497 | tig0008063:+10264 | Msa1345990:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTGATTTTATAAAGTAT+AGG | + | tig0008063:9293-9312 | Msa1346000:intergenic | 10.0% |
| !!! | AATTGTTTTATTTAATTCTA+TGG | + | tig0008063:9325-9344 | Msa1346000:intergenic | 10.0% |
| !! | ATAGAATTAAATAAAACAAT+TGG | - | tig0008063:9324-9343 | Msa1346000:intron | 10.0% |
| !!! | ATTATATGGATTAGAATTTT+AGG | - | tig0008063:9541-9560 | Msa1346000:intron | 15.0% |
| !! | TAAGTTCTTATATCATTACA+TGG | - | tig0008063:8067-8086 | Msa1346000:three_prime_UTR | 20.0% |
| !! | TTGAAAGATTAAGTATGATA+AGG | + | tig0008063:8124-8143 | Msa1346000:intergenic | 20.0% |
| !! | ATACTTAATCTTTCAATATC+AGG | - | tig0008063:8128-8147 | Msa1346000:three_prime_UTR | 20.0% |
| !! | TACTTAATCTTTCAATATCA+GGG | - | tig0008063:8129-8148 | Msa1346000:three_prime_UTR | 20.0% |
| !! | ATGTATCTAATCACATTTAT+AGG | + | tig0008063:9179-9198 | Msa1346000:intergenic | 20.0% |
| !!! | TTGATTTTATAAAGTATAGG+TGG | + | tig0008063:9290-9309 | Msa1346000:intergenic | 20.0% |
| !!! | TTTAGTCAAATTTCACTTTT+TGG | - | tig0008063:9610-9629 | Msa1346000:intron | 20.0% |
| !!! | TTAGTCAAATTTCACTTTTT+GGG | - | tig0008063:9611-9630 | Msa1346000:intron | 20.0% |
| !!! | AGAACTTAAGAGATTTTATT+AGG | - | tig0008063:9738-9757 | Msa1346000:CDS | 20.0% |
| !! | CTTAAAAATGAGTTTATAGA+GGG | + | tig0008063:9854-9873 | Msa1346000:intergenic | 20.0% |
| !!! | AATGAATTAAACAATGGATT+AGG | + | tig0008063:10298-10317 | Msa1346000:intergenic | 20.0% |
| !!! | TTTAATCAAATGAGCTTTTT+CGG | + | tig0008063:10344-10363 | Msa1346000:intergenic | 20.0% |
| !! | TGTGGCAAAAAAATATTTAA+CGG | - | tig0008063:10457-10476 | Msa1346000:five_prime_UTR | 20.0% |
| ! | ACTTAATCTTTCAATATCAG+GGG | - | tig0008063:8130-8149 | Msa1346000:three_prime_UTR | 25.0% |
| ! | AGTACTAAAATAATCACCTT+GGG | + | tig0008063:8850-8869 | Msa1346000:intergenic | 25.0% |
| ! | TAGTACTAAAATAATCACCT+TGG | + | tig0008063:8851-8870 | Msa1346000:intergenic | 25.0% |
| !!! | TTTTTTCGTATAAATGTGAC+CGG | + | tig0008063:9118-9137 | Msa1346000:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | tig0008063:9227-9246 | Msa1346000:intron | 25.0% |
| ! | CCATATAATCAATTGAGATT+CGG | + | tig0008063:9530-9549 | Msa1346000:intergenic | 25.0% |
| !!! | ATATGGATTAGAATTTTAGG+TGG | - | tig0008063:9544-9563 | Msa1346000:intron | 25.0% |
| ! | GCTTAAAAATGAGTTTATAG+AGG | + | tig0008063:9855-9874 | Msa1346000:intergenic | 25.0% |
| ! | TTACAGAAAGAAAAGATTCT+TGG | + | tig0008063:9930-9949 | Msa1346000:intergenic | 25.0% |
| ! | AGGCATAATGAATTAAACAA+TGG | + | tig0008063:10304-10323 | Msa1346000:intergenic | 25.0% |
| ! | TTTAATTCATTATGCCTTCA+TGG | - | tig0008063:10307-10326 | Msa1346000:CDS | 25.0% |
| ! | CATTTGATTAAACAAAACTG+TGG | - | tig0008063:10352-10371 | Msa1346000:CDS | 25.0% |
| ! | CAAACCTTAAATGAAGTAAA+TGG | + | tig0008063:10431-10450 | Msa1346000:intergenic | 25.0% |
| !! | CATTTACTTCATTTAAGGTT+TGG | - | tig0008063:10429-10448 | Msa1346000:exon | 25.0% |
| TCTTTCTTCTGTGGTAATTT+GGG | + | tig0008063:7982-8001 | None:intergenic | 30.0% | |
| TTCTTTCTTCTGTGGTAATT+TGG | + | tig0008063:7983-8002 | None:intergenic | 30.0% | |
| TTTGAATGAAGTATGAACGT+TGG | - | tig0008063:8959-8978 | Msa1346000:intron | 30.0% | |
| !! | TAGAGAGTACTAAGTACTAA+CGG | + | tig0008063:9007-9026 | Msa1346000:intergenic | 30.0% |
| ! | CAATCAATTGGAGAGTATAA+AGG | + | tig0008063:9500-9519 | Msa1346000:intergenic | 30.0% |
| TTCGGTATACTTCAATCAAT+TGG | + | tig0008063:9512-9531 | Msa1346000:intergenic | 30.0% | |
| CCGAATCTCAATTGATTATA+TGG | - | tig0008063:9527-9546 | Msa1346000:intron | 30.0% | |
| CATTATCAATTAAGCACATG+TGG | - | tig0008063:9570-9589 | Msa1346000:intron | 30.0% | |
| !!! | TTTCACTTTTTGGGATATCA+CGG | - | tig0008063:9620-9639 | Msa1346000:intron | 30.0% |
| TTGATCAGAGTGAAATATCA+TGG | - | tig0008063:10086-10105 | Msa1346000:CDS | 30.0% | |
| TGATCAGAGTGAAATATCAT+GGG | - | tig0008063:10087-10106 | Msa1346000:CDS | 30.0% | |
| TGTGATGGTAAGAATAGTTT+GGG | + | tig0008063:10137-10156 | Msa1346000:intergenic | 30.0% | |
| TTGTGATGGTAAGAATAGTT+TGG | + | tig0008063:10138-10157 | Msa1346000:intergenic | 30.0% | |
| AACTATTCTTACCATCACAA+CGG | - | tig0008063:10138-10157 | Msa1346000:CDS | 30.0% | |
| AAAAATGCTGTGTTTAGAAG+TGG | + | tig0008063:10189-10208 | Msa1346000:intergenic | 30.0% | |
| TGCTCCATTTACTTCATTTA+AGG | - | tig0008063:10424-10443 | Msa1346000:CDS | 30.0% | |
| ! | GGTAAGACATGAGAATTTTC+CGG | + | tig0008063:8348-8367 | Msa1346000:intergenic | 35.0% |
| GGAAAATTCTCATGTCTTAC+CGG | - | tig0008063:8347-8366 | Msa1346000:CDS | 35.0% | |
| TTAGTGGAATTCACTCTTGA+CGG | - | tig0008063:8428-8447 | Msa1346000:CDS | 35.0% | |
| AACAACTCAGAATAACTCGA+AGG | + | tig0008063:8713-8732 | Msa1346000:intergenic | 35.0% | |
| TAACTATTCTGTACTCCATC+CGG | - | tig0008063:9096-9115 | Msa1346000:intron | 35.0% | |
| TACAAATCACATACTTCCTC+CGG | + | tig0008063:9249-9268 | Msa1346000:intergenic | 35.0% | |
| TCTCCTATAGTCCTATGTAT+GGG | - | tig0008063:9404-9423 | Msa1346000:intron | 35.0% | |
| GATTCTTGGCGTACATTATT+TGG | + | tig0008063:9916-9935 | Msa1346000:intergenic | 35.0% | |
| ! | AGCATTTTTCCCTCAAAACT+AGG | - | tig0008063:10200-10219 | Msa1346000:CDS | 35.0% |
| TTTCCCTCAAAACTAGGTTA+AGG | - | tig0008063:10206-10225 | Msa1346000:CDS | 35.0% | |
| TACGCCTAAAACAATTGCTT+GGG | - | tig0008063:10271-10290 | Msa1346000:CDS | 35.0% | |
| !!! | GAGCTTTTTCGGATATGTAT+GGG | + | tig0008063:10333-10352 | Msa1346000:intergenic | 35.0% |
| !!! | TGAGCTTTTTCGGATATGTA+TGG | + | tig0008063:10334-10353 | Msa1346000:intergenic | 35.0% |
| TAACCAGTTATAGCATTACC+GGG | + | tig0008063:10397-10416 | Msa1346000:intergenic | 35.0% | |
| GTAACCAGTTATAGCATTAC+CGG | + | tig0008063:10398-10417 | Msa1346000:intergenic | 35.0% | |
| TAATGCTATAACTGGTTACG+AGG | - | tig0008063:10399-10418 | Msa1346000:CDS | 35.0% | |
| ! | ATTTAAGGTTTGGAGACATG+TGG | - | tig0008063:10439-10458 | Msa1346000:exon | 35.0% |
| GCAAGTTCTTCTTTCTTCTG+TGG | + | tig0008063:7991-8010 | None:intergenic | 40.0% | |
| ACAAATGCAACTACACAGTC+TGG | - | tig0008063:8180-8199 | Msa1346000:three_prime_UTR | 40.0% | |
| ! | AAGACATGAGAATTTTCCGG+TGG | + | tig0008063:8345-8364 | Msa1346000:intergenic | 40.0% |
| GTCAAGAGTGAATTCCACTA+AGG | + | tig0008063:8429-8448 | Msa1346000:intergenic | 40.0% | |
| TTCGACGTGAGTTTAGTTGA+CGG | - | tig0008063:8470-8489 | Msa1346000:CDS | 40.0% | |
| GGTATTCGTACAGTTATCAC+CGG | + | tig0008063:8534-8553 | Msa1346000:intergenic | 40.0% | |
| GGTGATAACTGTACGAATAC+CGG | - | tig0008063:8533-8552 | Msa1346000:intron | 40.0% | |
| ! | TACGAATACCGGTTGTATCA+GGG | - | tig0008063:8544-8563 | Msa1346000:intron | 40.0% |
| CTCGAAGGTTTACAAGTGTT+AGG | + | tig0008063:8698-8717 | Msa1346000:intergenic | 40.0% | |
| TTCGTATAAATGTGACCGGA+TGG | + | tig0008063:9114-9133 | Msa1346000:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | tig0008063:9230-9249 | Msa1346000:intron | 40.0% | |
| AACTCTATGCTTAGCTCGAA+GGG | - | tig0008063:9347-9366 | Msa1346000:intron | 40.0% | |
| GGTTTATAATGCACTGCATC+TGG | - | tig0008063:9381-9400 | Msa1346000:intron | 40.0% | |
| GTCTCCTATAGTCCTATGTA+TGG | - | tig0008063:9403-9422 | Msa1346000:intron | 40.0% | |
| CAAAATCTGGTCCCATACAT+AGG | + | tig0008063:9418-9437 | Msa1346000:intergenic | 40.0% | |
| !! | TGGGACCAGATTTTGAAGAA+AGG | - | tig0008063:9423-9442 | Msa1346000:intron | 40.0% |
| CCTTGCCTTTCTTCAAAATC+TGG | + | tig0008063:9431-9450 | Msa1346000:intergenic | 40.0% | |
| !! | CCAGATTTTGAAGAAAGGCA+AGG | - | tig0008063:9428-9447 | Msa1346000:intron | 40.0% |
| TGAAGAAAGGCAAGGAAAAG+TGG | - | tig0008063:9436-9455 | Msa1346000:intron | 40.0% | |
| ! | GTTTTTGCAGTCAAAAGTCG+TGG | - | tig0008063:9975-9994 | Msa1346000:CDS | 40.0% |
| GGACAAAATCCGAAATCAGA+TGG | - | tig0008063:10001-10020 | Msa1346000:CDS | 40.0% | |
| TTTCCACACATTGATACACG+TGG | + | tig0008063:10113-10132 | Msa1346000:intergenic | 40.0% | |
| !!! | GCTCCTTAACCTAGTTTTGA+GGG | + | tig0008063:10212-10231 | Msa1346000:intergenic | 40.0% |
| GCTCATGAACCTAATTTGGT+GGG | + | tig0008063:10242-10261 | Msa1346000:intergenic | 40.0% | |
| !! | TGTTTTAGGCGTAGAAAACG+TGG | + | tig0008063:10264-10283 | Msa1346000:intergenic | 40.0% |
| CTACGCCTAAAACAATTGCT+TGG | - | tig0008063:10270-10289 | Msa1346000:CDS | 40.0% | |
| ! | AGGTCCCAAGCAATTGTTTT+AGG | + | tig0008063:10278-10297 | Msa1346000:intergenic | 40.0% |
| AACCAGTTATAGCATTACCG+GGG | + | tig0008063:10396-10415 | Msa1346000:intergenic | 40.0% | |
| ! | ACCGGTTTCGTTCTTCAATC+CGG | - | tig0008063:8245-8264 | Msa1346000:three_prime_UTR | 45.0% |
| ! | GAATTTTCCGGTGGAGTCTT+GGG | + | tig0008063:8336-8355 | Msa1346000:intergenic | 45.0% |
| ! | AGAATTTTCCGGTGGAGTCT+TGG | + | tig0008063:8337-8356 | Msa1346000:intergenic | 45.0% |
| GTGAATTCCACTAAGGTAGC+CGG | + | tig0008063:8422-8441 | Msa1346000:intergenic | 45.0% | |
| ! | GAATTCACTCTTGACGGATC+CGG | - | tig0008063:8434-8453 | Msa1346000:CDS | 45.0% |
| CCTTGTGGAACTACAAGCAT+TGG | + | tig0008063:8506-8525 | Msa1346000:intergenic | 45.0% | |
| CCAATGCTTGTAGTTCCACA+AGG | - | tig0008063:8503-8522 | Msa1346000:CDS | 45.0% | |
| ATGCTTGTAGTTCCACAAGG+TGG | - | tig0008063:8506-8525 | Msa1346000:CDS | 45.0% | |
| ! | GTACGAATACCGGTTGTATC+AGG | - | tig0008063:8543-8562 | Msa1346000:intron | 45.0% |
| GAGCAAATCCCTGATACAAC+CGG | + | tig0008063:8555-8574 | Msa1346000:intergenic | 45.0% | |
| ! | GGTTGTATCAGGGATTTGCT+CGG | - | tig0008063:8554-8573 | Msa1346000:intron | 45.0% |
| ! | CTCGTAACCTTAAGCTCTGA+AGG | + | tig0008063:8587-8606 | Msa1346000:intergenic | 45.0% |
| TTAAGGTTACGAGCGTGGAT+GGG | - | tig0008063:8594-8613 | Msa1346000:intron | 45.0% | |
| !! | AAAAGTGCTTGTGAGGCGTT+TGG | - | tig0008063:8635-8654 | Msa1346000:intron | 45.0% |
| ACGGCACAATATTGTTGCAG+CGG | - | tig0008063:8659-8678 | Msa1346000:intron | 45.0% | |
| CACGTTTACATGTGCTTCTG+CGG | - | tig0008063:8784-8803 | Msa1346000:intron | 45.0% | |
| GAACTCTATGCTTAGCTCGA+AGG | - | tig0008063:9346-9365 | Msa1346000:intron | 45.0% | |
| GCTCGAAGGGCTACTAATAA+TGG | - | tig0008063:9360-9379 | Msa1346000:intron | 45.0% | |
| GGTCCCATACATAGGACTAT+AGG | + | tig0008063:9410-9429 | Msa1346000:intergenic | 45.0% | |
| GAGTCACTGCCATCTGATTT+CGG | + | tig0008063:10013-10032 | Msa1346000:intergenic | 45.0% | |
| TCATCGCCTCAGCTTAACAA+CGG | - | tig0008063:10034-10053 | Msa1346000:CDS | 45.0% | |
| TTACCATCACAACGGCTATG+TGG | - | tig0008063:10146-10165 | Msa1346000:CDS | 45.0% | |
| AGAAGTGGAAAAGCTGACAC+AGG | + | tig0008063:10174-10193 | Msa1346000:intergenic | 45.0% | |
| !!! | GGCTCCTTAACCTAGTTTTG+AGG | + | tig0008063:10213-10232 | Msa1346000:intergenic | 45.0% |
| ! | ACCTAATTTGGTGGGAAACG+TGG | + | tig0008063:10234-10253 | Msa1346000:intergenic | 45.0% |
| GGCTCATGAACCTAATTTGG+TGG | + | tig0008063:10243-10262 | Msa1346000:intergenic | 45.0% | |
| CGTGGCTCATGAACCTAATT+TGG | + | tig0008063:10246-10265 | Msa1346000:intergenic | 45.0% | |
| ACCAGTTATAGCATTACCGG+GGG | + | tig0008063:10395-10414 | Msa1346000:intergenic | 45.0% | |
| !!! | TAATTTAATGTTTTAAAAAA+CGG | + | tig0008063:9078-9097 | Msa1346000:intergenic | 5.0% |
| ATGCAACTACACAGTCTGGC+CGG | - | tig0008063:8184-8203 | Msa1346000:three_prime_UTR | 50.0% | |
| TGAAGAACGAAACCGGTGGT+TGG | + | tig0008063:8242-8261 | Msa1346000:intergenic | 50.0% | |
| GGATTGAAGAACGAAACCGG+TGG | + | tig0008063:8246-8265 | Msa1346000:intergenic | 50.0% | |
| GCCGGATTGAAGAACGAAAC+CGG | + | tig0008063:8249-8268 | Msa1346000:intergenic | 50.0% | |
| !! | GGTGATTGATTTGGAGTCGC+CGG | + | tig0008063:8267-8286 | Msa1346000:intergenic | 50.0% |
| AGTCTTGGGAACAGAGAGTG+CGG | + | tig0008063:8322-8341 | Msa1346000:intergenic | 50.0% | |
| CTTACCGGCGATTGTAACTC+CGG | - | tig0008063:8362-8381 | Msa1346000:CDS | 50.0% | |
| TTTGCCGGAGTTACAATCGC+CGG | + | tig0008063:8369-8388 | Msa1346000:intergenic | 50.0% | |
| AAAGTCGAATGCTCCGGGAA+CGG | - | tig0008063:8386-8405 | Msa1346000:CDS | 50.0% | |
| AATTCCACTAAGGTAGCCGG+TGG | + | tig0008063:8419-8438 | Msa1346000:intergenic | 50.0% | |
| GTCGAAGAAATCGAGTCCAC+CGG | + | tig0008063:8456-8475 | Msa1346000:intergenic | 50.0% | |
| AGAGCTTAAGGTTACGAGCG+TGG | - | tig0008063:8589-8608 | Msa1346000:intron | 50.0% | |
| CTTAAGGTTACGAGCGTGGA+TGG | - | tig0008063:8593-8612 | Msa1346000:intron | 50.0% | |
| !! | GGCGTGTAAAAGTGCTTGTG+AGG | - | tig0008063:8628-8647 | Msa1346000:intron | 50.0% |
| ! | TGCTTGTGAGGCGTTTGGAA+CGG | - | tig0008063:8640-8659 | Msa1346000:intron | 50.0% |
| TCACCTTGGGCTGTTGTTAG+TGG | + | tig0008063:8837-8856 | Msa1346000:intergenic | 50.0% | |
| TTGCAGTCAAAAGTCGTGGC+AGG | - | tig0008063:9979-9998 | Msa1346000:CDS | 50.0% | |
| TGCAGTCAAAAGTCGTGGCA+GGG | - | tig0008063:9980-9999 | Msa1346000:CDS | 50.0% | |
| ! | TAACAACGGCTCTGGCTCAA+TGG | - | tig0008063:10048-10067 | Msa1346000:CDS | 50.0% |
| ! | TCTGGCTCAATGGTGTACGT+TGG | - | tig0008063:10058-10077 | Msa1346000:CDS | 50.0% |
| GCCACGTTTCCCACCAAATT+AGG | - | tig0008063:10230-10249 | Msa1346000:CDS | 50.0% | |
| CGGATATGTATGGGCCATGA+AGG | + | tig0008063:10324-10343 | Msa1346000:intergenic | 50.0% | |
| TCAACACAGTGAAGATCCCC+CGG | - | tig0008063:10376-10395 | Msa1346000:CDS | 50.0% | |
| TCCCCCGGTAATGCTATAAC+TGG | - | tig0008063:10391-10410 | Msa1346000:CDS | 50.0% | |
| TGCAACTACACAGTCTGGCC+GGG | - | tig0008063:8185-8204 | Msa1346000:three_prime_UTR | 55.0% | |
| ACGAAACCGGTGGTTGGAAG+CGG | + | tig0008063:8236-8255 | Msa1346000:intergenic | 55.0% | |
| AGCGGGTGGGGTGATTGATT+TGG | + | tig0008063:8276-8295 | Msa1346000:intergenic | 55.0% | |
| CTCTGTTCCCAAGACTCCAC+CGG | - | tig0008063:8326-8345 | Msa1346000:exon | 55.0% | |
| TCCGGCAAAGTCGAATGCTC+CGG | - | tig0008063:8380-8399 | Msa1346000:CDS | 55.0% | |
| ! | AACACCACCGGCTACCTTAG+TGG | - | tig0008063:8412-8431 | Msa1346000:CDS | 55.0% |
| ! | TTCACTCTTGACGGATCCGG+TGG | - | tig0008063:8437-8456 | Msa1346000:CDS | 55.0% |
| GTAGTTCCACAAGGTGGCTC+CGG | - | tig0008063:8512-8531 | Msa1346000:CDS | 55.0% | |
| TTATCACCGGAGCCACCTTG+TGG | + | tig0008063:8521-8540 | Msa1346000:intergenic | 55.0% | |
| CGCGTGTCCTTCAGAGCTTA+AGG | - | tig0008063:8577-8596 | Msa1346000:intron | 55.0% | |
| TATTGTTGCAGCGGCGCGTA+TGG | - | tig0008063:8668-8687 | Msa1346000:intron | 55.0% | |
| CCTTGGGCTGTTGTTAGTGG+AGG | + | tig0008063:8834-8853 | Msa1346000:intergenic | 55.0% | |
| CCTCCACTAACAACAGCCCA+AGG | - | tig0008063:8831-8850 | Msa1346000:intron | 55.0% | |
| CCAGAGCCGTTGTTAAGCTG+AGG | + | tig0008063:10043-10062 | Msa1346000:intergenic | 55.0% | |
| CCTCAGCTTAACAACGGCTC+TGG | - | tig0008063:10040-10059 | Msa1346000:CDS | 55.0% | |
| GGCTCAATGGTGTACGTTGG+TGG | - | tig0008063:10061-10080 | Msa1346000:CDS | 55.0% | |
| GGGCCACGTGTATCAATGTG+TGG | - | tig0008063:10107-10126 | Msa1346000:CDS | 55.0% | |
| GAGCCACATAGCCGTTGTGA+TGG | + | tig0008063:10152-10171 | Msa1346000:intergenic | 55.0% | |
| ! | CCGGCGTTGGAGAGAATTCC+CGG | + | tig0008063:8206-8225 | Msa1346000:intergenic | 60.0% |
| CCGGGAATTCTCTCCAACGC+CGG | - | tig0008063:8203-8222 | Msa1346000:three_prime_UTR | 60.0% | |
| GTTGCACCGCTTCCAACCAC+CGG | - | tig0008063:8227-8246 | Msa1346000:three_prime_UTR | 60.0% | |
| AATCACCCCACCCGCTTCCT+GGG | - | tig0008063:8280-8299 | Msa1346000:three_prime_UTR | 60.0% | |
| TTCCTGGGGAGGCCGTTTCT+GGG | - | tig0008063:8295-8314 | Msa1346000:three_prime_UTR | 60.0% | |
| ! | AGAGAGTGCGGCCCCAGAAA+CGG | + | tig0008063:8310-8329 | Msa1346000:intergenic | 60.0% |
| ! | CCCGGAGCATTCGACTTTGC+CGG | + | tig0008063:8384-8403 | Msa1346000:intergenic | 60.0% |
| CCGGCAAAGTCGAATGCTCC+GGG | - | tig0008063:8381-8400 | Msa1346000:CDS | 60.0% | |
| CGTGGATGGGAAAGAGAGCG+TGG | - | tig0008063:8607-8626 | Msa1346000:intron | 60.0% | |
| TACGCGTAGCTATACGCGCG+TGG | + | tig0008063:8749-8768 | Msa1346000:intergenic | 60.0% | |
| GGTTGGAAGCGGTGCAACGC+CGG | + | tig0008063:8225-8244 | Msa1346000:intergenic | 65.0% | |
| CAATCACCCCACCCGCTTCC+TGG | - | tig0008063:8279-8298 | Msa1346000:three_prime_UTR | 65.0% | |
| ATCACCCCACCCGCTTCCTG+GGG | - | tig0008063:8281-8300 | Msa1346000:three_prime_UTR | 65.0% | |
| AAACGGCCTCCCCAGGAAGC+GGG | + | tig0008063:8293-8312 | Msa1346000:intergenic | 65.0% | |
| GAAACGGCCTCCCCAGGAAG+CGG | + | tig0008063:8294-8313 | Msa1346000:intergenic | 65.0% | |
| CTTCCTGGGGAGGCCGTTTC+TGG | - | tig0008063:8294-8313 | Msa1346000:three_prime_UTR | 65.0% | |
| TCCTGGGGAGGCCGTTTCTG+GGG | - | tig0008063:8296-8315 | Msa1346000:three_prime_UTR | 65.0% | |
| AAGCGGTGCAACGCCGGCGT+TGG | + | tig0008063:8219-8238 | Msa1346000:intergenic | 70.0% | |
| !! | CGGTGGTGTTGCGCCGTTCC+CGG | + | tig0008063:8402-8421 | Msa1346000:intergenic | 70.0% |
| CGGGAACGGCGCAACACCAC+CGG | - | tig0008063:8400-8419 | Msa1346000:CDS | 70.0% | |
| ACCCCACCCGCTTCCTGGGG+AGG | - | tig0008063:8284-8303 | Msa1346000:three_prime_UTR | 75.0% | |
| GCCTCCCCAGGAAGCGGGTG+GGG | + | tig0008063:8288-8307 | Msa1346000:intergenic | 75.0% | |
| GGCCTCCCCAGGAAGCGGGT+GGG | + | tig0008063:8289-8308 | Msa1346000:intergenic | 75.0% | |
| GCCCCAGAAACGGCCTCCCC+AGG | + | tig0008063:8300-8319 | Msa1346000:intergenic | 75.0% | |
| ! | CGGCCTCCCCAGGAAGCGGG+TGG | + | tig0008063:8290-8309 | Msa1346000:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0008063 | gene | 7970 | 10559 | 7970 | ID=Msa1346000;Name=Msa1346000 |
| tig0008063 | mRNA | 7970 | 10559 | 7970 | ID=Msa1346000-mRNA-1;Parent=Msa1346000;Name=Msa1346000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=116|1|1|1|1|1|2|364|325 |
| tig0008063 | exon | 7970 | 8544 | 7970 | ID=Msa1346000-mRNA-1:exon:5286;Parent=Msa1346000-mRNA-1 |
| tig0008063 | exon | 9677 | 10559 | 9677 | ID=Msa1346000-mRNA-1:exon:5285;Parent=Msa1346000-mRNA-1 |
| tig0008063 | five_prime_UTR | 10444 | 10559 | 10444 | ID=Msa1346000-mRNA-1:five_prime_utr;Parent=Msa1346000-mRNA-1 |
| tig0008063 | CDS | 9677 | 10443 | 9677 | ID=Msa1346000-mRNA-1:cds;Parent=Msa1346000-mRNA-1 |
| tig0008063 | CDS | 8334 | 8544 | 8334 | ID=Msa1346000-mRNA-1:cds;Parent=Msa1346000-mRNA-1 |
| tig0008063 | three_prime_UTR | 7970 | 8333 | 7970 | ID=Msa1346000-mRNA-1:three_prime_utr;Parent=Msa1346000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
