Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385330 | XP_024635613.2 | 97.546 | 326 | 7 | 1 | 1 | 325 | 1 | 326 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385330 | sp|A0A1P8B554|THLP1_ARATH | 60.000 | 245 | 86 | 4 | 12 | 250 | 19 | 257 | 4.91e-92 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385330 | A0A396IZC8 | 97.546 | 326 | 7 | 1 | 1 | 325 | 1 | 326 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385330 | Msa0523070 | 0.973320 | 3.146021e-136 | -8.615850e-47 |
| Msa0385330 | Msa0580390 | 0.800862 | 1.180870e-48 | -8.615850e-47 |
| Msa0385330 | Msa0654020 | -0.820028 | 8.516916e-53 | -8.615850e-47 |
| Msa0385330 | Msa0736500 | 0.812346 | 4.440398e-51 | -8.615850e-47 |
| Msa0385330 | Msa0795890 | 0.800267 | 1.561688e-48 | -8.615850e-47 |
| Msa0385330 | Msa0815590 | 0.804559 | 2.038509e-49 | -8.615850e-47 |
| Msa0385330 | Msa1132860 | 0.800537 | 1.375609e-48 | -8.615850e-47 |
| Msa0385330 | Msa1346000 | 0.930729 | 1.071679e-93 | -8.615850e-47 |
| Msa0385330 | Msa1383780 | 0.916035 | 2.890270e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385330 | MtrunA17_Chr3g0142781 | 97.546 | 326 | 7 | 1 | 1 | 325 | 1 | 326 | 0.0 | 642 |
| Msa0385330 | MtrunA17_Chr1g0156711 | 75.076 | 329 | 70 | 7 | 1 | 323 | 1 | 323 | 5.84e-173 | 482 |
| Msa0385330 | MtrunA17_Chr5g0405581 | 68.199 | 261 | 78 | 4 | 8 | 265 | 8 | 266 | 8.54e-120 | 347 |
| Msa0385330 | MtrunA17_Chr8g0352471 | 67.194 | 253 | 78 | 4 | 9 | 259 | 9 | 258 | 1.19e-115 | 337 |
| Msa0385330 | MtrunA17_Chr8g0371781 | 68.254 | 252 | 72 | 4 | 19 | 265 | 21 | 269 | 1.57e-114 | 333 |
| Msa0385330 | MtrunA17_Chr8g0357311 | 67.083 | 240 | 75 | 3 | 10 | 248 | 10 | 246 | 7.90e-112 | 325 |
| Msa0385330 | MtrunA17_Chr4g0037351 | 63.374 | 243 | 86 | 3 | 8 | 248 | 6 | 247 | 4.48e-106 | 313 |
| Msa0385330 | MtrunA17_Chr4g0037331 | 54.296 | 291 | 124 | 6 | 1 | 291 | 1 | 282 | 1.55e-96 | 289 |
| Msa0385330 | MtrunA17_Chr8g0371771 | 58.130 | 246 | 93 | 5 | 3 | 248 | 8 | 243 | 3.65e-92 | 276 |
| Msa0385330 | MtrunA17_Chr7g0265011 | 53.386 | 251 | 113 | 4 | 1 | 251 | 43 | 289 | 7.57e-90 | 270 |
| Msa0385330 | MtrunA17_Chr5g0405611 | 55.224 | 268 | 107 | 7 | 14 | 279 | 82 | 338 | 8.35e-88 | 268 |
| Msa0385330 | MtrunA17_Chr2g0311561 | 55.652 | 230 | 98 | 3 | 20 | 248 | 5 | 231 | 5.11e-85 | 258 |
| Msa0385330 | MtrunA17_Chr5g0428801 | 52.400 | 250 | 113 | 5 | 7 | 253 | 8 | 254 | 6.22e-85 | 258 |
| Msa0385330 | MtrunA17_Chr2g0311521 | 53.696 | 257 | 110 | 6 | 11 | 262 | 8 | 260 | 2.37e-84 | 274 |
| Msa0385330 | MtrunA17_Chr8g0351851 | 52.245 | 245 | 109 | 6 | 4 | 248 | 1 | 237 | 3.45e-80 | 243 |
| Msa0385330 | MtrunA17_Chr1g0180121 | 51.639 | 244 | 111 | 4 | 9 | 248 | 1 | 241 | 1.01e-79 | 243 |
| Msa0385330 | MtrunA17_Chr2g0312181 | 50.628 | 239 | 115 | 3 | 11 | 248 | 6 | 242 | 3.89e-79 | 241 |
| Msa0385330 | MtrunA17_Chr6g0482741 | 50.413 | 242 | 115 | 4 | 7 | 248 | 3 | 239 | 2.87e-78 | 239 |
| Msa0385330 | MtrunA17_Chr2g0311551 | 51.837 | 245 | 112 | 5 | 20 | 262 | 17 | 257 | 3.30e-78 | 257 |
| Msa0385330 | MtrunA17_Chr1g0154591 | 54.852 | 237 | 97 | 7 | 16 | 248 | 1 | 231 | 3.53e-78 | 238 |
| Msa0385330 | MtrunA17_Chr1g0180221 | 50.198 | 253 | 120 | 4 | 1 | 250 | 34 | 283 | 1.05e-77 | 239 |
| Msa0385330 | MtrunA17_Chr1g0179851 | 51.639 | 244 | 109 | 5 | 11 | 250 | 2 | 240 | 1.50e-77 | 237 |
| Msa0385330 | MtrunA17_Chr1g0179891 | 52.049 | 244 | 110 | 5 | 7 | 250 | 2 | 238 | 2.24e-77 | 236 |
| Msa0385330 | MtrunA17_Chr1g0180231 | 52.033 | 246 | 113 | 4 | 5 | 250 | 3 | 243 | 9.38e-77 | 235 |
| Msa0385330 | MtrunA17_Chr1g0179871 | 52.033 | 246 | 113 | 4 | 5 | 250 | 3 | 243 | 9.38e-77 | 235 |
| Msa0385330 | MtrunA17_Chr1g0180161 | 53.571 | 224 | 101 | 3 | 29 | 252 | 25 | 245 | 1.22e-76 | 235 |
| Msa0385330 | MtrunA17_Chr3g0141341 | 54.911 | 224 | 95 | 6 | 26 | 248 | 12 | 230 | 1.29e-73 | 227 |
| Msa0385330 | MtrunA17_Chr8g0392961 | 49.388 | 245 | 119 | 4 | 4 | 248 | 5 | 244 | 1.43e-72 | 224 |
| Msa0385330 | MtrunA17_Chr6g0452331 | 45.669 | 254 | 129 | 7 | 1 | 248 | 1 | 251 | 6.29e-65 | 206 |
| Msa0385330 | MtrunA17_Chr3g0112091 | 47.083 | 240 | 120 | 7 | 11 | 248 | 2 | 236 | 1.13e-63 | 201 |
| Msa0385330 | MtrunA17_Chr5g0424221 | 46.154 | 247 | 121 | 8 | 3 | 249 | 6 | 240 | 4.31e-63 | 201 |
| Msa0385330 | MtrunA17_Chr7g0239131 | 46.586 | 249 | 124 | 7 | 1 | 248 | 1 | 241 | 1.17e-61 | 196 |
| Msa0385330 | MtrunA17_Chr2g0311531 | 47.009 | 234 | 94 | 8 | 21 | 253 | 22 | 226 | 3.00e-59 | 190 |
| Msa0385330 | MtrunA17_Chr4g0031221 | 43.210 | 243 | 126 | 8 | 11 | 249 | 18 | 252 | 3.29e-59 | 190 |
| Msa0385330 | MtrunA17_Chr5g0406771 | 52.000 | 175 | 79 | 3 | 16 | 187 | 3 | 175 | 1.34e-53 | 173 |
| Msa0385330 | MtrunA17_Chr5g0397831 | 41.935 | 248 | 115 | 8 | 9 | 248 | 9 | 235 | 3.80e-51 | 169 |
| Msa0385330 | MtrunA17_Chr2g0311501 | 46.032 | 189 | 93 | 7 | 69 | 253 | 3 | 186 | 1.05e-49 | 164 |
| Msa0385330 | MtrunA17_Chr5g0397821 | 39.556 | 225 | 112 | 7 | 25 | 248 | 23 | 224 | 8.46e-46 | 155 |
| Msa0385330 | MtrunA17_Chr8g0386341 | 39.024 | 246 | 122 | 9 | 6 | 248 | 27 | 247 | 3.99e-45 | 154 |
| Msa0385330 | MtrunA17_Chr2g0309611 | 31.250 | 256 | 160 | 6 | 1 | 247 | 1 | 249 | 5.15e-39 | 138 |
| Msa0385330 | MtrunA17_Chr1g0179911 | 30.116 | 259 | 149 | 9 | 2 | 250 | 3 | 239 | 1.21e-29 | 113 |
| Msa0385330 | MtrunA17_Chr8g0386351 | 43.662 | 142 | 66 | 6 | 1 | 141 | 43 | 171 | 2.57e-26 | 103 |
| Msa0385330 | MtrunA17_Chr1g0180181 | 55.814 | 86 | 37 | 1 | 167 | 252 | 18 | 102 | 1.69e-24 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385330 | AT1G75800.1 | 60.597 | 335 | 113 | 5 | 4 | 325 | 1 | 329 | 2.69e-137 | 392 |
| Msa0385330 | AT1G20030.2 | 64.379 | 306 | 101 | 4 | 22 | 325 | 16 | 315 | 2.11e-133 | 382 |
| Msa0385330 | AT1G20030.1 | 64.145 | 304 | 101 | 4 | 24 | 325 | 1 | 298 | 3.95e-132 | 378 |
| Msa0385330 | AT4G36010.1 | 63.433 | 268 | 83 | 7 | 22 | 278 | 19 | 282 | 6.29e-111 | 324 |
| Msa0385330 | AT4G36010.2 | 63.433 | 268 | 83 | 7 | 22 | 278 | 19 | 282 | 6.29e-111 | 324 |
| Msa0385330 | AT2G17860.1 | 63.673 | 245 | 84 | 4 | 10 | 250 | 7 | 250 | 3.11e-105 | 308 |
| Msa0385330 | AT4G38670.3 | 54.386 | 285 | 119 | 4 | 4 | 287 | 1 | 275 | 5.86e-105 | 308 |
| Msa0385330 | AT4G38670.1 | 54.386 | 285 | 119 | 4 | 4 | 287 | 1 | 275 | 5.86e-105 | 308 |
| Msa0385330 | AT4G38670.2 | 63.043 | 230 | 84 | 1 | 20 | 248 | 1 | 230 | 3.08e-103 | 303 |
| Msa0385330 | AT4G38660.1 | 56.089 | 271 | 108 | 5 | 3 | 273 | 7 | 266 | 1.73e-95 | 287 |
| Msa0385330 | AT4G24180.1 | 57.778 | 270 | 99 | 5 | 12 | 275 | 19 | 279 | 3.03e-94 | 282 |
| Msa0385330 | AT4G24180.2 | 56.475 | 278 | 106 | 5 | 4 | 275 | 6 | 274 | 3.43e-94 | 282 |
| Msa0385330 | AT4G38660.2 | 59.055 | 254 | 93 | 5 | 20 | 273 | 2 | 244 | 1.37e-93 | 281 |
| Msa0385330 | AT4G24180.5 | 58.498 | 253 | 93 | 4 | 4 | 250 | 6 | 252 | 4.71e-93 | 277 |
| Msa0385330 | AT4G24180.6 | 60.000 | 245 | 86 | 4 | 12 | 250 | 19 | 257 | 4.99e-93 | 277 |
| Msa0385330 | AT5G38280.1 | 53.360 | 253 | 116 | 2 | 11 | 261 | 10 | 262 | 1.10e-92 | 289 |
| Msa0385330 | AT5G38280.2 | 53.360 | 253 | 116 | 2 | 11 | 261 | 10 | 262 | 2.90e-92 | 288 |
| Msa0385330 | AT4G24180.3 | 58.772 | 228 | 83 | 3 | 12 | 233 | 19 | 241 | 4.91e-85 | 259 |
| Msa0385330 | AT4G24180.4 | 57.203 | 236 | 90 | 3 | 4 | 233 | 6 | 236 | 7.39e-85 | 259 |
| Msa0385330 | AT5G24620.1 | 50.368 | 272 | 118 | 6 | 13 | 279 | 12 | 271 | 9.82e-82 | 254 |
| Msa0385330 | AT1G19320.1 | 55.020 | 249 | 101 | 7 | 5 | 249 | 6 | 247 | 2.50e-81 | 247 |
| Msa0385330 | AT5G24620.3 | 50.368 | 272 | 118 | 6 | 13 | 279 | 88 | 347 | 2.71e-81 | 255 |
| Msa0385330 | AT5G24620.4 | 50.368 | 272 | 118 | 6 | 13 | 279 | 67 | 326 | 2.88e-81 | 254 |
| Msa0385330 | AT1G75040.1 | 54.733 | 243 | 101 | 7 | 6 | 248 | 5 | 238 | 4.09e-80 | 244 |
| Msa0385330 | AT1G75050.1 | 52.227 | 247 | 113 | 5 | 6 | 252 | 5 | 246 | 4.86e-80 | 244 |
| Msa0385330 | AT1G75030.1 | 51.429 | 245 | 111 | 7 | 7 | 248 | 3 | 242 | 4.98e-77 | 236 |
| Msa0385330 | AT1G18250.2 | 51.528 | 229 | 106 | 4 | 25 | 253 | 21 | 244 | 3.83e-75 | 231 |
| Msa0385330 | AT1G18250.1 | 51.528 | 229 | 106 | 4 | 25 | 253 | 20 | 243 | 4.97e-75 | 231 |
| Msa0385330 | AT1G73620.1 | 52.232 | 224 | 102 | 4 | 25 | 248 | 41 | 259 | 8.14e-74 | 229 |
| Msa0385330 | AT1G77700.3 | 48.606 | 251 | 109 | 9 | 4 | 250 | 39 | 273 | 3.71e-69 | 219 |
| Msa0385330 | AT2G28790.2 | 47.036 | 253 | 126 | 7 | 1 | 249 | 26 | 274 | 7.28e-69 | 216 |
| Msa0385330 | AT1G77700.2 | 48.000 | 250 | 118 | 8 | 4 | 253 | 39 | 276 | 7.30e-69 | 218 |
| Msa0385330 | AT2G28790.1 | 47.036 | 253 | 126 | 7 | 1 | 249 | 1 | 249 | 8.78e-69 | 215 |
| Msa0385330 | AT1G77700.1 | 50.435 | 230 | 94 | 9 | 25 | 250 | 88 | 301 | 1.26e-66 | 213 |
| Msa0385330 | AT4G36000.2 | 52.889 | 225 | 81 | 8 | 102 | 323 | 1 | 203 | 1.18e-62 | 198 |
| Msa0385330 | AT4G36000.1 | 52.889 | 225 | 81 | 8 | 102 | 323 | 1 | 203 | 1.18e-62 | 198 |
| Msa0385330 | AT5G40020.1 | 45.059 | 253 | 132 | 6 | 1 | 250 | 1 | 249 | 2.01e-62 | 199 |
| Msa0385330 | AT4G18253.1 | 42.339 | 248 | 133 | 4 | 4 | 250 | 1 | 239 | 5.27e-62 | 197 |
| Msa0385330 | AT1G70250.1 | 44.351 | 239 | 120 | 6 | 24 | 256 | 143 | 374 | 1.60e-60 | 207 |
| Msa0385330 | AT4G18250.1 | 41.935 | 279 | 152 | 6 | 11 | 287 | 41 | 311 | 9.21e-60 | 203 |
| Msa0385330 | AT5G02140.2 | 44.672 | 244 | 129 | 6 | 6 | 248 | 2 | 240 | 1.09e-59 | 192 |
| Msa0385330 | AT5G02140.1 | 44.672 | 244 | 129 | 6 | 6 | 248 | 2 | 240 | 1.83e-59 | 193 |
| Msa0385330 | AT4G11650.1 | 40.650 | 246 | 121 | 8 | 4 | 248 | 1 | 222 | 1.64e-48 | 163 |
| Msa0385330 | AT5G24620.2 | 49.682 | 157 | 64 | 4 | 133 | 285 | 15 | 160 | 3.94e-39 | 140 |
| Msa0385330 | AT2G24810.1 | 58.025 | 81 | 31 | 2 | 169 | 249 | 116 | 193 | 4.60e-23 | 94.7 |
Find 130 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTGGGGAGGCCGTTTC+TGG | -0.052359 | 3_1:+88822477 | Msa0385330:CDS |
| TTCTTTCTTCTGTGGTAATT+TGG | 0.105512 | 3_1:-88822169 | None:intergenic |
| TGCTCCATTTACTTCATTTA+AGG | 0.112130 | 3_1:+88824640 | Msa0385330:three_prime_UTR |
| ATACTTAATCTTTCAATATC+AGG | 0.208828 | 3_1:+88822311 | Msa0385330:CDS |
| GCCACGTTTCCCACCAAATT+AGG | 0.242961 | 3_1:+88824446 | Msa0385330:three_prime_UTR |
| CGTGGCTCATGAACCTAATT+TGG | 0.261252 | 3_1:-88824459 | None:intergenic |
| TCTTTCTTCTGTGGTAATTT+GGG | 0.261573 | 3_1:-88822168 | None:intergenic |
| TTTAATTCATTATGCCTTCA+TGG | 0.275523 | 3_1:+88824523 | Msa0385330:three_prime_UTR |
| CAATCACCCCACCCGCTTCC+TGG | 0.293774 | 3_1:+88822462 | Msa0385330:CDS |
| CGGTGGTGTTGCGCCGTTCC+CGG | 0.299087 | 3_1:-88822582 | None:intergenic |
| GTACGAATACCGGTTGTATC+AGG | 0.300485 | 3_1:+88822726 | Msa0385330:CDS |
| TTCCTGGGGAGGCCGTTTCT+GGG | 0.311657 | 3_1:+88822478 | Msa0385330:CDS |
| CAAACCTTAAATGAAGTAAA+TGG | 0.317513 | 3_1:-88824644 | None:intergenic |
| CATTTACTTCATTTAAGGTT+TGG | 0.324477 | 3_1:+88824645 | Msa0385330:three_prime_UTR |
| AGCGGGTGGGGTGATTGATT+TGG | 0.328396 | 3_1:-88822456 | None:intergenic |
| GAGTCACTGCCATCTGATTT+CGG | 0.335928 | 3_1:-88824226 | None:intergenic |
| CCCGGAGCATTCGACTTTGC+CGG | 0.336054 | 3_1:-88822564 | None:intergenic |
| CCGGCGTTGGAGAGAATTCC+CGG | 0.381681 | 3_1:-88822386 | None:intergenic |
| TCACCTTGGGCTGTTGTTAG+TGG | 0.384731 | 3_1:-88823017 | None:intergenic |
| TTGTGATGGTAAGAATAGTT+TGG | 0.385951 | 3_1:-88824351 | None:intergenic |
| AATGAATTAAACAATGGATT+AGG | 0.389652 | 3_1:-88824511 | None:intergenic |
| GGAAAATTCTCATGTCTTAC+CGG | 0.390131 | 3_1:+88822530 | Msa0385330:CDS |
| TGTGATGGTAAGAATAGTTT+GGG | 0.391149 | 3_1:-88824350 | None:intergenic |
| GCCTCCCCAGGAAGCGGGTG+GGG | 0.392476 | 3_1:-88822468 | None:intergenic |
| TGTTGTGATATGAGAGAAGA+AGG | 0.399923 | 3_1:-88824773 | None:intergenic |
| GTAACCAGTTATAGCATTAC+CGG | 0.401599 | 3_1:-88824611 | None:intergenic |
| AATCACCCCACCCGCTTCCT+GGG | 0.417844 | 3_1:+88822463 | Msa0385330:CDS |
| CTACGCCTAAAACAATTGCT+TGG | 0.419389 | 3_1:+88824486 | Msa0385330:three_prime_UTR |
| TACGCCTAAAACAATTGCTT+GGG | 0.426462 | 3_1:+88824487 | Msa0385330:three_prime_UTR |
| TTTCCCTCAAAACTAGGTTA+AGG | 0.429188 | 3_1:+88824422 | Msa0385330:three_prime_UTR |
| CGCGTGTCCTTCAGAGCTTA+AGG | 0.433220 | 3_1:+88822760 | Msa0385330:CDS |
| TACTTAATCTTTCAATATCA+GGG | 0.436205 | 3_1:+88822312 | Msa0385330:CDS |
| ACCGGTTTCGTTCTTCAATC+CGG | 0.449618 | 3_1:+88822428 | Msa0385330:CDS |
| TATTGTTGCAGCGGCGCGTA+TGG | 0.455532 | 3_1:+88822851 | Msa0385330:CDS |
| TTGCAGTCAAAAGTCGTGGC+AGG | 0.458754 | 3_1:+88824195 | Msa0385330:intron |
| CTTAAGGTTACGAGCGTGGA+TGG | 0.458977 | 3_1:+88822776 | Msa0385330:CDS |
| GCCCCAGAAACGGCCTCCCC+AGG | 0.462616 | 3_1:-88822480 | None:intergenic |
| TTGATCAGAGTGAAATATCA+TGG | 0.466410 | 3_1:+88824302 | Msa0385330:CDS |
| CTCGAAGGTTTACAAGTGTT+AGG | 0.467705 | 3_1:-88822878 | None:intergenic |
| TTGAAAGATTAAGTATGATA+AGG | 0.468373 | 3_1:-88822304 | None:intergenic |
| AAAAGTGCTTGTGAGGCGTT+TGG | 0.468766 | 3_1:+88822818 | Msa0385330:CDS |
| CGGATATGTATGGGCCATGA+AGG | 0.481278 | 3_1:-88824537 | None:intergenic |
| ATGCAACTACACAGTCTGGC+CGG | 0.486519 | 3_1:+88822367 | Msa0385330:CDS |
| GCAAGTTCTTCTTTCTTCTG+TGG | 0.490008 | 3_1:-88822177 | None:intergenic |
| AGAGAGTGCGGCCCCAGAAA+CGG | 0.490637 | 3_1:-88822490 | None:intergenic |
| AAGCGGTGCAACGCCGGCGT+TGG | 0.494696 | 3_1:-88822399 | None:intergenic |
| TTAGCGGAATTCACTCTTGA+CGG | 0.495810 | 3_1:+88822611 | Msa0385330:CDS |
| AACACCACCGGCTACCTTAG+CGG | 0.497856 | 3_1:+88822595 | Msa0385330:CDS |
| TCCGGCAAAGTCGAATGCTC+CGG | 0.498921 | 3_1:+88822563 | Msa0385330:CDS |
| GGTTGGAAGCGGTGCAACGC+CGG | 0.499056 | 3_1:-88822405 | None:intergenic |
| CGGGAACGGCGCAACACCAC+CGG | 0.499852 | 3_1:+88822583 | Msa0385330:CDS |
| ACCCCACCCGCTTCCTGGGG+AGG | 0.502582 | 3_1:+88822467 | Msa0385330:CDS |
| TAACAACGGCTCTGGCTCAA+TGG | 0.504154 | 3_1:+88824264 | Msa0385330:CDS |
| ACAAATGCAACTACACAGTC+TGG | 0.504490 | 3_1:+88822363 | Msa0385330:CDS |
| GTAGTTCCACAAGGTGGCTC+CGG | 0.507977 | 3_1:+88822695 | Msa0385330:CDS |
| GGCTCAATGGTGTACGTTGG+TGG | 0.508308 | 3_1:+88824277 | Msa0385330:CDS |
| GTTGCACCGCTTCCAACCAC+CGG | 0.509906 | 3_1:+88822410 | Msa0385330:CDS |
| CGGCCTCCCCAGGAAGCGGG+TGG | 0.513133 | 3_1:-88822470 | None:intergenic |
| GCCGGATTGAAGAACGAAAC+CGG | 0.514473 | 3_1:-88822429 | None:intergenic |
| GAAACGGCCTCCCCAGGAAG+CGG | 0.516631 | 3_1:-88822474 | None:intergenic |
| GGCTCATGAACCTAATTTGG+TGG | 0.516773 | 3_1:-88824456 | None:intergenic |
| CCGGCAAAGTCGAATGCTCC+GGG | 0.517602 | 3_1:+88822564 | Msa0385330:CDS |
| AAACGGCCTCCCCAGGAAGC+GGG | 0.522887 | 3_1:-88822473 | None:intergenic |
| GGTGATAACTGTACGAATAC+CGG | 0.523090 | 3_1:+88822716 | Msa0385330:CDS |
| TTCGACGTGAGTTTAGTTGA+CGG | 0.526291 | 3_1:+88822653 | Msa0385330:CDS |
| CCTTGTGGAACTACAAGCAT+TGG | 0.527175 | 3_1:-88822686 | None:intergenic |
| GAATTCACTCTTGACGGATC+CGG | 0.528777 | 3_1:+88822617 | Msa0385330:CDS |
| TAAGTTCTTATATCATTACA+TGG | 0.530345 | 3_1:+88822250 | Msa0385330:exon |
| CCTCAGCTTAACAACGGCTC+TGG | 0.530822 | 3_1:+88824256 | Msa0385330:CDS |
| TCCTGGGGAGGCCGTTTCTG+GGG | 0.533325 | 3_1:+88822479 | Msa0385330:CDS |
| TGCAACTACACAGTCTGGCC+GGG | 0.533665 | 3_1:+88822368 | Msa0385330:CDS |
| CCTTGGGCTGTTGTTAGTGG+AGG | 0.540523 | 3_1:-88823014 | None:intergenic |
| GAGCAAATCCCTGATACAAC+CGG | 0.543946 | 3_1:-88822735 | None:intergenic |
| GTGAATTCCGCTAAGGTAGC+CGG | 0.545298 | 3_1:-88822602 | None:intergenic |
| GGTGATTGATTTGGAGTCGC+CGG | 0.547268 | 3_1:-88822447 | None:intergenic |
| TGCTTGTGAGGCGTTTGGAA+CGG | 0.555408 | 3_1:+88822823 | Msa0385330:CDS |
| CTCTGTTCCCAAGACTCCAC+CGG | 0.561123 | 3_1:+88822509 | Msa0385330:CDS |
| CTCGTAACCTTAAGCTCTGA+AGG | 0.561863 | 3_1:-88822767 | None:intergenic |
| CACGTTTACATGTGCTTCTG+CGG | 0.562492 | 3_1:+88822967 | Msa0385330:CDS |
| AAAGTCGAATGCTCCGGGAA+CGG | 0.563096 | 3_1:+88822569 | Msa0385330:CDS |
| ACGAAACCGGTGGTTGGAAG+CGG | 0.564357 | 3_1:-88822416 | None:intergenic |
| GGCCTCCCCAGGAAGCGGGT+GGG | 0.565175 | 3_1:-88822469 | None:intergenic |
| TTCACTCTTGACGGATCCGG+TGG | 0.567093 | 3_1:+88822620 | Msa0385330:CDS |
| ACCTAATTTGGTGGGAAACG+TGG | 0.570452 | 3_1:-88824447 | None:intergenic |
| ATCACCCCACCCGCTTCCTG+GGG | 0.571380 | 3_1:+88822464 | Msa0385330:CDS |
| AGAGCTTAAGGTTACGAGCG+TGG | 0.575561 | 3_1:+88822772 | Msa0385330:CDS |
| TACGAATACCGGTTGTATCA+GGG | 0.577024 | 3_1:+88822727 | Msa0385330:CDS |
| TGCAGTCAAAAGTCGTGGCA+GGG | 0.577535 | 3_1:+88824196 | Msa0385330:intron |
| TGAAGAACGAAACCGGTGGT+TGG | 0.582201 | 3_1:-88822422 | None:intergenic |
| TTACCATCACAACGGCTATG+TGG | 0.583574 | 3_1:+88824362 | Msa0385330:CDS |
| GGACAAAATCCGAAATCAGA+TGG | 0.593450 | 3_1:+88824217 | Msa0385330:CDS |
| TAACCAGTTATAGCATTACC+GGG | 0.594563 | 3_1:-88824610 | None:intergenic |
| AGGTTTGGATGTAAGACATG+TGG | 0.596577 | 3_1:+88824660 | Msa0385330:three_prime_UTR |
| CCGGGAATTCTCTCCAACGC+CGG | 0.602290 | 3_1:+88822386 | Msa0385330:CDS |
| CTTACCGGCGATTGTAACTC+CGG | 0.603049 | 3_1:+88822545 | Msa0385330:CDS |
| AAGCCACATAGCCGTTGTGA+TGG | 0.604066 | 3_1:-88824365 | None:intergenic |
| TGATCAGAGTGAAATATCAT+GGG | 0.606552 | 3_1:+88824303 | Msa0385330:CDS |
| TTAAGGTTACGAGCGTGGAT+GGG | 0.608209 | 3_1:+88822777 | Msa0385330:CDS |
| AACAACTCAGAATAACTCGA+AGG | 0.608498 | 3_1:-88822893 | None:intergenic |
| GGTTGTATCAGGGATTTGCT+CGG | 0.611595 | 3_1:+88822737 | Msa0385330:CDS |
| GTCAAGAGTGAATTCCGCTA+AGG | 0.614672 | 3_1:-88822609 | None:intergenic |
| CCAATGCTTGTAGTTCCACA+AGG | 0.616622 | 3_1:+88822686 | Msa0385330:CDS |
| GTTGTGATATGAGAGAAGAA+GGG | 0.617376 | 3_1:-88824772 | None:intergenic |
| GCTCATGAACCTAATTTGGT+GGG | 0.618681 | 3_1:-88824455 | None:intergenic |
| ACTTAATCTTTCAATATCAG+GGG | 0.619589 | 3_1:+88822313 | Msa0385330:CDS |
| TTATCACCGGAGCCACCTTG+TGG | 0.619692 | 3_1:-88822701 | None:intergenic |
| AGGCATAATGAATTAAACAA+TGG | 0.622637 | 3_1:-88824517 | None:intergenic |
| TCAACACAGTGAAGATCCCC+CGG | 0.623518 | 3_1:+88824592 | Msa0385330:three_prime_UTR |
| TTTGCCGGAGTTACAATCGC+CGG | 0.625708 | 3_1:-88822549 | None:intergenic |
| ACGGCACAATATTGTTGCAG+CGG | 0.630605 | 3_1:+88822842 | Msa0385330:CDS |
| GTCGAAGAAATCGAGTCCAC+CGG | 0.632997 | 3_1:-88822636 | None:intergenic |
| CCAGAGCCGTTGTTAAGCTG+AGG | 0.634119 | 3_1:-88824256 | None:intergenic |
| TCTGGCTCAATGGTGTACGT+TGG | 0.639261 | 3_1:+88824274 | Msa0385330:CDS |
| GGCGTGTAAAAGTGCTTGTG+AGG | 0.640993 | 3_1:+88822811 | Msa0385330:CDS |
| CATTTGATTAAACAAAACTG+TGG | 0.644215 | 3_1:+88824568 | Msa0385330:three_prime_UTR |
| CGTGGATGGGAAAGAGAGCG+TGG | 0.649504 | 3_1:+88822790 | Msa0385330:CDS |
| CCTCCACTAACAACAGCCCA+AGG | 0.650691 | 3_1:+88823014 | Msa0385330:CDS |
| GGTATTCGTACAGTTATCAC+CGG | 0.657314 | 3_1:-88822714 | None:intergenic |
| TTTCCACACATTGATACACG+TGG | 0.670795 | 3_1:-88824326 | None:intergenic |
| AACTATTCTTACCATCACAA+CGG | 0.673194 | 3_1:+88824354 | Msa0385330:CDS |
| AGTCTTGGGAACAGAGAGTG+CGG | 0.677635 | 3_1:-88822502 | None:intergenic |
| AACCAGTTATAGCATTACCG+GGG | 0.684276 | 3_1:-88824609 | None:intergenic |
| TCATCGCCTCAGCTTAACAA+CGG | 0.684947 | 3_1:+88824250 | Msa0385330:CDS |
| TAATGCTATAACTGGTTACG+AGG | 0.685018 | 3_1:+88824615 | Msa0385330:three_prime_UTR |
| GGGCCACGTGTATCAATGTG+TGG | 0.689160 | 3_1:+88824323 | Msa0385330:CDS |
| ATGCTTGTAGTTCCACAAGG+TGG | 0.691545 | 3_1:+88822689 | Msa0385330:CDS |
| TACGCGTAGCTATACGCGCG+TGG | 0.692773 | 3_1:-88822929 | None:intergenic |
| AATTCCGCTAAGGTAGCCGG+TGG | 0.692922 | 3_1:-88822599 | None:intergenic |
| ACCAGTTATAGCATTACCGG+GGG | 0.700155 | 3_1:-88824608 | None:intergenic |
| GGATTGAAGAACGAAACCGG+TGG | 0.773497 | 3_1:-88822426 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGTTTTATTTAATTCTA+TGG | - | chr3_1:88823532-88823551 | None:intergenic | 10.0% |
| !! | ATAGAATTAAATAAAACAAT+TGG | + | chr3_1:88823531-88823550 | Msa0385330:intron | 10.0% |
| !!! | TAATTGGTTTTATAAAGTAT+AGG | - | chr3_1:88823482-88823501 | None:intergenic | 15.0% |
| !!! | ATTGATAGATTTTGTATAAT+TGG | - | chr3_1:88823498-88823517 | None:intergenic | 15.0% |
| !! | TAAGTTCTTATATCATTACA+TGG | + | chr3_1:88822250-88822269 | Msa0385330:exon | 20.0% |
| !! | TTGAAAGATTAAGTATGATA+AGG | - | chr3_1:88822307-88822326 | None:intergenic | 20.0% |
| !! | ATACTTAATCTTTCAATATC+AGG | + | chr3_1:88822311-88822330 | Msa0385330:CDS | 20.0% |
| !! | TACTTAATCTTTCAATATCA+GGG | + | chr3_1:88822312-88822331 | Msa0385330:CDS | 20.0% |
| !!! | TTTTTTCTTATAAATGTGAC+CGG | - | chr3_1:88823306-88823325 | None:intergenic | 20.0% |
| !!! | TTTAGTCAAATTTCACTTTT+TGG | + | chr3_1:88823825-88823844 | Msa0385330:intron | 20.0% |
| !!! | TTAGTCAAATTTCACTTTTT+GGG | + | chr3_1:88823826-88823845 | Msa0385330:intron | 20.0% |
| !! | CTTAAAAATGAGTTTATAGA+GGG | - | chr3_1:88824070-88824089 | None:intergenic | 20.0% |
| !!! | AATGAATTAAACAATGGATT+AGG | - | chr3_1:88824514-88824533 | None:intergenic | 20.0% |
| !!! | TTTAATCAAATGAGCTTTTT+CGG | - | chr3_1:88824560-88824579 | None:intergenic | 20.0% |
| !! | TGTGGCAAAAAAATATTTAA+CGG | + | chr3_1:88824678-88824697 | Msa0385330:three_prime_UTR | 20.0% |
| ! | ATTTGGGAACAAAAAGATTA+CGG | - | chr3_1:88822155-88822174 | None:intergenic | 25.0% |
| ! | ACTTAATCTTTCAATATCAG+GGG | + | chr3_1:88822313-88822332 | Msa0385330:CDS | 25.0% |
| ! | AGTACTAAAATAATCACCTT+GGG | - | chr3_1:88823033-88823052 | None:intergenic | 25.0% |
| ! | TAGTACTAAAATAATCACCT+TGG | - | chr3_1:88823034-88823053 | None:intergenic | 25.0% |
| ! | ATGTATCTAGTCACATTTAT+AGG | - | chr3_1:88823367-88823386 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr3_1:88823416-88823435 | Msa0385330:intron | 25.0% |
| !!! | TTGGTTTTATAAAGTATAGG+TGG | - | chr3_1:88823479-88823498 | None:intergenic | 25.0% |
| ! | CCATATAATCAATTGAGATT+CGG | - | chr3_1:88823738-88823757 | None:intergenic | 25.0% |
| !! | AGAACTTGAGAGATTTTATT+AGG | + | chr3_1:88823954-88823973 | Msa0385330:intron | 25.0% |
| ! | GCTTAAAAATGAGTTTATAG+AGG | - | chr3_1:88824071-88824090 | None:intergenic | 25.0% |
| ! | TTACAGAAAGAAAAGATTCT+TGG | - | chr3_1:88824146-88824165 | None:intergenic | 25.0% |
| ! | AGGCATAATGAATTAAACAA+TGG | - | chr3_1:88824520-88824539 | None:intergenic | 25.0% |
| ! | TTTAATTCATTATGCCTTCA+TGG | + | chr3_1:88824523-88824542 | Msa0385330:three_prime_UTR | 25.0% |
| ! | CATTTGATTAAACAAAACTG+TGG | + | chr3_1:88824568-88824587 | Msa0385330:three_prime_UTR | 25.0% |
| ! | CAAACCTTAAATGAAGTAAA+TGG | - | chr3_1:88824647-88824666 | None:intergenic | 25.0% |
| !! | CATTTACTTCATTTAAGGTT+TGG | + | chr3_1:88824645-88824664 | Msa0385330:three_prime_UTR | 25.0% |
| TCTTTCTTCTGTGGTAATTT+GGG | - | chr3_1:88822171-88822190 | None:intergenic | 30.0% | |
| TTCTTTCTTCTGTGGTAATT+TGG | - | chr3_1:88822172-88822191 | None:intergenic | 30.0% | |
| ATGAAGTATAGTATGAACGT+TGG | + | chr3_1:88823147-88823166 | Msa0385330:intron | 30.0% | |
| !! | TAGAGAGTACTAAGTACTAA+CGG | - | chr3_1:88823195-88823214 | None:intergenic | 30.0% |
| TTATAAAGTATAGGTGGAAC+AGG | - | chr3_1:88823473-88823492 | None:intergenic | 30.0% | |
| ! | CAATCAATTGGAGAGTATAA+AGG | - | chr3_1:88823708-88823727 | None:intergenic | 30.0% |
| CCGAATCTCAATTGATTATA+TGG | + | chr3_1:88823735-88823754 | Msa0385330:intron | 30.0% | |
| !! | GGATTAGAATTTTAGCCTTT+AGG | + | chr3_1:88823756-88823775 | Msa0385330:intron | 30.0% |
| !! | TTAGAATTTTAGCCTTTAGG+TGG | + | chr3_1:88823759-88823778 | Msa0385330:intron | 30.0% |
| !! | TTGATAATGTATCCACCTAA+AGG | - | chr3_1:88823774-88823793 | None:intergenic | 30.0% |
| !!! | TTTCACTTTTTGGGATATCA+CGG | + | chr3_1:88823835-88823854 | Msa0385330:intron | 30.0% |
| TTGATCAGAGTGAAATATCA+TGG | + | chr3_1:88824302-88824321 | Msa0385330:CDS | 30.0% | |
| TGATCAGAGTGAAATATCAT+GGG | + | chr3_1:88824303-88824322 | Msa0385330:CDS | 30.0% | |
| TGTGATGGTAAGAATAGTTT+GGG | - | chr3_1:88824353-88824372 | None:intergenic | 30.0% | |
| TTGTGATGGTAAGAATAGTT+TGG | - | chr3_1:88824354-88824373 | None:intergenic | 30.0% | |
| AACTATTCTTACCATCACAA+CGG | + | chr3_1:88824354-88824373 | Msa0385330:CDS | 30.0% | |
| AAAAATGCTGTGTTTAGAAG+TGG | - | chr3_1:88824405-88824424 | None:intergenic | 30.0% | |
| TGCTCCATTTACTTCATTTA+AGG | + | chr3_1:88824640-88824659 | Msa0385330:three_prime_UTR | 30.0% | |
| ! | GGTAAGACATGAGAATTTTC+CGG | - | chr3_1:88822531-88822550 | None:intergenic | 35.0% |
| GGAAAATTCTCATGTCTTAC+CGG | + | chr3_1:88822530-88822549 | Msa0385330:CDS | 35.0% | |
| AACAACTCAGAATAACTCGA+AGG | - | chr3_1:88822896-88822915 | None:intergenic | 35.0% | |
| TAACTATTCTGTACTCCATC+CGG | + | chr3_1:88823284-88823303 | Msa0385330:intron | 35.0% | |
| TTCTTATAAATGTGACCGGA+TGG | - | chr3_1:88823302-88823321 | None:intergenic | 35.0% | |
| TACAAATCACATACTTCCTC+CGG | - | chr3_1:88823438-88823457 | None:intergenic | 35.0% | |
| TCTCCTATAGTCCTATGTAT+GGG | + | chr3_1:88823611-88823630 | Msa0385330:intron | 35.0% | |
| ! | TTCGGTGTACTTCAATCAAT+TGG | - | chr3_1:88823720-88823739 | None:intergenic | 35.0% |
| GATTCTTGGCGTACATTATT+TGG | - | chr3_1:88824132-88824151 | None:intergenic | 35.0% | |
| ! | AGCATTTTTCCCTCAAAACT+AGG | + | chr3_1:88824416-88824435 | Msa0385330:three_prime_UTR | 35.0% |
| TTTCCCTCAAAACTAGGTTA+AGG | + | chr3_1:88824422-88824441 | Msa0385330:three_prime_UTR | 35.0% | |
| TACGCCTAAAACAATTGCTT+GGG | + | chr3_1:88824487-88824506 | Msa0385330:three_prime_UTR | 35.0% | |
| !!! | GAGCTTTTTCGGATATGTAT+GGG | - | chr3_1:88824549-88824568 | None:intergenic | 35.0% |
| !!! | TGAGCTTTTTCGGATATGTA+TGG | - | chr3_1:88824550-88824569 | None:intergenic | 35.0% |
| TAACCAGTTATAGCATTACC+GGG | - | chr3_1:88824613-88824632 | None:intergenic | 35.0% | |
| GTAACCAGTTATAGCATTAC+CGG | - | chr3_1:88824614-88824633 | None:intergenic | 35.0% | |
| TAATGCTATAACTGGTTACG+AGG | + | chr3_1:88824615-88824634 | Msa0385330:three_prime_UTR | 35.0% | |
| GCAAGTTCTTCTTTCTTCTG+TGG | - | chr3_1:88822180-88822199 | None:intergenic | 40.0% | |
| ACAAATGCAACTACACAGTC+TGG | + | chr3_1:88822363-88822382 | Msa0385330:CDS | 40.0% | |
| ! | AAGACATGAGAATTTTCCGG+TGG | - | chr3_1:88822528-88822547 | None:intergenic | 40.0% |
| TTAGCGGAATTCACTCTTGA+CGG | + | chr3_1:88822611-88822630 | Msa0385330:CDS | 40.0% | |
| TTCGACGTGAGTTTAGTTGA+CGG | + | chr3_1:88822653-88822672 | Msa0385330:CDS | 40.0% | |
| GGTATTCGTACAGTTATCAC+CGG | - | chr3_1:88822717-88822736 | None:intergenic | 40.0% | |
| GGTGATAACTGTACGAATAC+CGG | + | chr3_1:88822716-88822735 | Msa0385330:CDS | 40.0% | |
| ! | TACGAATACCGGTTGTATCA+GGG | + | chr3_1:88822727-88822746 | Msa0385330:CDS | 40.0% |
| CTCGAAGGTTTACAAGTGTT+AGG | - | chr3_1:88822881-88822900 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | + | chr3_1:88823419-88823438 | Msa0385330:intron | 40.0% | |
| AACTCTATGCTTAGCTCGAA+GGG | + | chr3_1:88823554-88823573 | Msa0385330:intron | 40.0% | |
| GGTTTATAATGCACTGCATC+TGG | + | chr3_1:88823588-88823607 | Msa0385330:intron | 40.0% | |
| GTCTCCTATAGTCCTATGTA+TGG | + | chr3_1:88823610-88823629 | Msa0385330:intron | 40.0% | |
| CAAAATCTGGTCCCATACAT+AGG | - | chr3_1:88823625-88823644 | None:intergenic | 40.0% | |
| !! | TGGGACCAGATTTTGAAGAA+AGG | + | chr3_1:88823630-88823649 | Msa0385330:intron | 40.0% |
| CCTTGCCTTTCTTCAAAATC+TGG | - | chr3_1:88823638-88823657 | None:intergenic | 40.0% | |
| !! | CCAGATTTTGAAGAAAGGCA+AGG | + | chr3_1:88823635-88823654 | Msa0385330:intron | 40.0% |
| TGAAGAAAGGCAAGGAAAAG+TGG | + | chr3_1:88823643-88823662 | Msa0385330:intron | 40.0% | |
| ! | GTTTTTGCAGTCAAAAGTCG+TGG | + | chr3_1:88824191-88824210 | Msa0385330:intron | 40.0% |
| GGACAAAATCCGAAATCAGA+TGG | + | chr3_1:88824217-88824236 | Msa0385330:CDS | 40.0% | |
| TTTCCACACATTGATACACG+TGG | - | chr3_1:88824329-88824348 | None:intergenic | 40.0% | |
| !!! | GCTCCTTAACCTAGTTTTGA+GGG | - | chr3_1:88824428-88824447 | None:intergenic | 40.0% |
| GCTCATGAACCTAATTTGGT+GGG | - | chr3_1:88824458-88824477 | None:intergenic | 40.0% | |
| !! | TGTTTTAGGCGTAGAAAACG+TGG | - | chr3_1:88824480-88824499 | None:intergenic | 40.0% |
| CTACGCCTAAAACAATTGCT+TGG | + | chr3_1:88824486-88824505 | Msa0385330:three_prime_UTR | 40.0% | |
| ! | AGGTCCCAAGCAATTGTTTT+AGG | - | chr3_1:88824494-88824513 | None:intergenic | 40.0% |
| AACCAGTTATAGCATTACCG+GGG | - | chr3_1:88824612-88824631 | None:intergenic | 40.0% | |
| AGGTTTGGATGTAAGACATG+TGG | + | chr3_1:88824660-88824679 | Msa0385330:three_prime_UTR | 40.0% | |
| ! | ACCGGTTTCGTTCTTCAATC+CGG | + | chr3_1:88822428-88822447 | Msa0385330:CDS | 45.0% |
| ! | GAATTTTCCGGTGGAGTCTT+GGG | - | chr3_1:88822519-88822538 | None:intergenic | 45.0% |
| ! | AGAATTTTCCGGTGGAGTCT+TGG | - | chr3_1:88822520-88822539 | None:intergenic | 45.0% |
| GTCAAGAGTGAATTCCGCTA+AGG | - | chr3_1:88822612-88822631 | None:intergenic | 45.0% | |
| ! | GAATTCACTCTTGACGGATC+CGG | + | chr3_1:88822617-88822636 | Msa0385330:CDS | 45.0% |
| CCTTGTGGAACTACAAGCAT+TGG | - | chr3_1:88822689-88822708 | None:intergenic | 45.0% | |
| CCAATGCTTGTAGTTCCACA+AGG | + | chr3_1:88822686-88822705 | Msa0385330:CDS | 45.0% | |
| ATGCTTGTAGTTCCACAAGG+TGG | + | chr3_1:88822689-88822708 | Msa0385330:CDS | 45.0% | |
| ! | GTACGAATACCGGTTGTATC+AGG | + | chr3_1:88822726-88822745 | Msa0385330:CDS | 45.0% |
| GAGCAAATCCCTGATACAAC+CGG | - | chr3_1:88822738-88822757 | None:intergenic | 45.0% | |
| ! | GGTTGTATCAGGGATTTGCT+CGG | + | chr3_1:88822737-88822756 | Msa0385330:CDS | 45.0% |
| ! | CTCGTAACCTTAAGCTCTGA+AGG | - | chr3_1:88822770-88822789 | None:intergenic | 45.0% |
| TTAAGGTTACGAGCGTGGAT+GGG | + | chr3_1:88822777-88822796 | Msa0385330:CDS | 45.0% | |
| !! | AAAAGTGCTTGTGAGGCGTT+TGG | + | chr3_1:88822818-88822837 | Msa0385330:CDS | 45.0% |
| ACGGCACAATATTGTTGCAG+CGG | + | chr3_1:88822842-88822861 | Msa0385330:CDS | 45.0% | |
| CACGTTTACATGTGCTTCTG+CGG | + | chr3_1:88822967-88822986 | Msa0385330:CDS | 45.0% | |
| GAACTCTATGCTTAGCTCGA+AGG | + | chr3_1:88823553-88823572 | Msa0385330:intron | 45.0% | |
| GCTCGAAGGGCTACTAATAA+TGG | + | chr3_1:88823567-88823586 | Msa0385330:intron | 45.0% | |
| GGTCCCATACATAGGACTAT+AGG | - | chr3_1:88823617-88823636 | None:intergenic | 45.0% | |
| GAGTCACTGCCATCTGATTT+CGG | - | chr3_1:88824229-88824248 | None:intergenic | 45.0% | |
| TCATCGCCTCAGCTTAACAA+CGG | + | chr3_1:88824250-88824269 | Msa0385330:CDS | 45.0% | |
| TTACCATCACAACGGCTATG+TGG | + | chr3_1:88824362-88824381 | Msa0385330:CDS | 45.0% | |
| !!! | GGCTCCTTAACCTAGTTTTG+AGG | - | chr3_1:88824429-88824448 | None:intergenic | 45.0% |
| ! | ACCTAATTTGGTGGGAAACG+TGG | - | chr3_1:88824450-88824469 | None:intergenic | 45.0% |
| GGCTCATGAACCTAATTTGG+TGG | - | chr3_1:88824459-88824478 | None:intergenic | 45.0% | |
| CGTGGCTCATGAACCTAATT+TGG | - | chr3_1:88824462-88824481 | None:intergenic | 45.0% | |
| ACCAGTTATAGCATTACCGG+GGG | - | chr3_1:88824611-88824630 | None:intergenic | 45.0% | |
| !!! | TAATTTAATGTTTTAAAAAA+CGG | - | chr3_1:88823266-88823285 | None:intergenic | 5.0% |
| ATGCAACTACACAGTCTGGC+CGG | + | chr3_1:88822367-88822386 | Msa0385330:CDS | 50.0% | |
| TGAAGAACGAAACCGGTGGT+TGG | - | chr3_1:88822425-88822444 | None:intergenic | 50.0% | |
| GGATTGAAGAACGAAACCGG+TGG | - | chr3_1:88822429-88822448 | None:intergenic | 50.0% | |
| GCCGGATTGAAGAACGAAAC+CGG | - | chr3_1:88822432-88822451 | None:intergenic | 50.0% | |
| !! | GGTGATTGATTTGGAGTCGC+CGG | - | chr3_1:88822450-88822469 | None:intergenic | 50.0% |
| AGTCTTGGGAACAGAGAGTG+CGG | - | chr3_1:88822505-88822524 | None:intergenic | 50.0% | |
| CTTACCGGCGATTGTAACTC+CGG | + | chr3_1:88822545-88822564 | Msa0385330:CDS | 50.0% | |
| TTTGCCGGAGTTACAATCGC+CGG | - | chr3_1:88822552-88822571 | None:intergenic | 50.0% | |
| AAAGTCGAATGCTCCGGGAA+CGG | + | chr3_1:88822569-88822588 | Msa0385330:CDS | 50.0% | |
| GTGAATTCCGCTAAGGTAGC+CGG | - | chr3_1:88822605-88822624 | None:intergenic | 50.0% | |
| GTCGAAGAAATCGAGTCCAC+CGG | - | chr3_1:88822639-88822658 | None:intergenic | 50.0% | |
| AGAGCTTAAGGTTACGAGCG+TGG | + | chr3_1:88822772-88822791 | Msa0385330:CDS | 50.0% | |
| CTTAAGGTTACGAGCGTGGA+TGG | + | chr3_1:88822776-88822795 | Msa0385330:CDS | 50.0% | |
| !! | GGCGTGTAAAAGTGCTTGTG+AGG | + | chr3_1:88822811-88822830 | Msa0385330:CDS | 50.0% |
| ! | TGCTTGTGAGGCGTTTGGAA+CGG | + | chr3_1:88822823-88822842 | Msa0385330:CDS | 50.0% |
| TCACCTTGGGCTGTTGTTAG+TGG | - | chr3_1:88823020-88823039 | None:intergenic | 50.0% | |
| TTGCAGTCAAAAGTCGTGGC+AGG | + | chr3_1:88824195-88824214 | Msa0385330:intron | 50.0% | |
| TGCAGTCAAAAGTCGTGGCA+GGG | + | chr3_1:88824196-88824215 | Msa0385330:intron | 50.0% | |
| ! | TAACAACGGCTCTGGCTCAA+TGG | + | chr3_1:88824264-88824283 | Msa0385330:CDS | 50.0% |
| ! | TCTGGCTCAATGGTGTACGT+TGG | + | chr3_1:88824274-88824293 | Msa0385330:CDS | 50.0% |
| AAGCCACATAGCCGTTGTGA+TGG | - | chr3_1:88824368-88824387 | None:intergenic | 50.0% | |
| GCCACGTTTCCCACCAAATT+AGG | + | chr3_1:88824446-88824465 | Msa0385330:three_prime_UTR | 50.0% | |
| CGGATATGTATGGGCCATGA+AGG | - | chr3_1:88824540-88824559 | None:intergenic | 50.0% | |
| TCAACACAGTGAAGATCCCC+CGG | + | chr3_1:88824592-88824611 | Msa0385330:three_prime_UTR | 50.0% | |
| TCCCCCGGTAATGCTATAAC+TGG | + | chr3_1:88824607-88824626 | Msa0385330:three_prime_UTR | 50.0% | |
| TGCAACTACACAGTCTGGCC+GGG | + | chr3_1:88822368-88822387 | Msa0385330:CDS | 55.0% | |
| ACGAAACCGGTGGTTGGAAG+CGG | - | chr3_1:88822419-88822438 | None:intergenic | 55.0% | |
| AGCGGGTGGGGTGATTGATT+TGG | - | chr3_1:88822459-88822478 | None:intergenic | 55.0% | |
| CTCTGTTCCCAAGACTCCAC+CGG | + | chr3_1:88822509-88822528 | Msa0385330:CDS | 55.0% | |
| TCCGGCAAAGTCGAATGCTC+CGG | + | chr3_1:88822563-88822582 | Msa0385330:CDS | 55.0% | |
| ! | AACACCACCGGCTACCTTAG+CGG | + | chr3_1:88822595-88822614 | Msa0385330:CDS | 55.0% |
| AATTCCGCTAAGGTAGCCGG+TGG | - | chr3_1:88822602-88822621 | None:intergenic | 55.0% | |
| ! | TTCACTCTTGACGGATCCGG+TGG | + | chr3_1:88822620-88822639 | Msa0385330:CDS | 55.0% |
| GTAGTTCCACAAGGTGGCTC+CGG | + | chr3_1:88822695-88822714 | Msa0385330:CDS | 55.0% | |
| TTATCACCGGAGCCACCTTG+TGG | - | chr3_1:88822704-88822723 | None:intergenic | 55.0% | |
| CGCGTGTCCTTCAGAGCTTA+AGG | + | chr3_1:88822760-88822779 | Msa0385330:CDS | 55.0% | |
| TATTGTTGCAGCGGCGCGTA+TGG | + | chr3_1:88822851-88822870 | Msa0385330:CDS | 55.0% | |
| CCTTGGGCTGTTGTTAGTGG+AGG | - | chr3_1:88823017-88823036 | None:intergenic | 55.0% | |
| CCTCCACTAACAACAGCCCA+AGG | + | chr3_1:88823014-88823033 | Msa0385330:CDS | 55.0% | |
| CCAGAGCCGTTGTTAAGCTG+AGG | - | chr3_1:88824259-88824278 | None:intergenic | 55.0% | |
| CCTCAGCTTAACAACGGCTC+TGG | + | chr3_1:88824256-88824275 | Msa0385330:CDS | 55.0% | |
| GGCTCAATGGTGTACGTTGG+TGG | + | chr3_1:88824277-88824296 | Msa0385330:CDS | 55.0% | |
| GGGCCACGTGTATCAATGTG+TGG | + | chr3_1:88824323-88824342 | Msa0385330:CDS | 55.0% | |
| ! | CCGGCGTTGGAGAGAATTCC+CGG | - | chr3_1:88822389-88822408 | None:intergenic | 60.0% |
| CCGGGAATTCTCTCCAACGC+CGG | + | chr3_1:88822386-88822405 | Msa0385330:CDS | 60.0% | |
| GTTGCACCGCTTCCAACCAC+CGG | + | chr3_1:88822410-88822429 | Msa0385330:CDS | 60.0% | |
| AATCACCCCACCCGCTTCCT+GGG | + | chr3_1:88822463-88822482 | Msa0385330:CDS | 60.0% | |
| TTCCTGGGGAGGCCGTTTCT+GGG | + | chr3_1:88822478-88822497 | Msa0385330:CDS | 60.0% | |
| ! | AGAGAGTGCGGCCCCAGAAA+CGG | - | chr3_1:88822493-88822512 | None:intergenic | 60.0% |
| ! | CCCGGAGCATTCGACTTTGC+CGG | - | chr3_1:88822567-88822586 | None:intergenic | 60.0% |
| CCGGCAAAGTCGAATGCTCC+GGG | + | chr3_1:88822564-88822583 | Msa0385330:CDS | 60.0% | |
| CGTGGATGGGAAAGAGAGCG+TGG | + | chr3_1:88822790-88822809 | Msa0385330:CDS | 60.0% | |
| TACGCGTAGCTATACGCGCG+TGG | - | chr3_1:88822932-88822951 | None:intergenic | 60.0% | |
| GGTTGGAAGCGGTGCAACGC+CGG | - | chr3_1:88822408-88822427 | None:intergenic | 65.0% | |
| CAATCACCCCACCCGCTTCC+TGG | + | chr3_1:88822462-88822481 | Msa0385330:CDS | 65.0% | |
| ATCACCCCACCCGCTTCCTG+GGG | + | chr3_1:88822464-88822483 | Msa0385330:CDS | 65.0% | |
| AAACGGCCTCCCCAGGAAGC+GGG | - | chr3_1:88822476-88822495 | None:intergenic | 65.0% | |
| GAAACGGCCTCCCCAGGAAG+CGG | - | chr3_1:88822477-88822496 | None:intergenic | 65.0% | |
| CTTCCTGGGGAGGCCGTTTC+TGG | + | chr3_1:88822477-88822496 | Msa0385330:CDS | 65.0% | |
| TCCTGGGGAGGCCGTTTCTG+GGG | + | chr3_1:88822479-88822498 | Msa0385330:CDS | 65.0% | |
| AAGCGGTGCAACGCCGGCGT+TGG | - | chr3_1:88822402-88822421 | None:intergenic | 70.0% | |
| !! | CGGTGGTGTTGCGCCGTTCC+CGG | - | chr3_1:88822585-88822604 | None:intergenic | 70.0% |
| CGGGAACGGCGCAACACCAC+CGG | + | chr3_1:88822583-88822602 | Msa0385330:CDS | 70.0% | |
| ACCCCACCCGCTTCCTGGGG+AGG | + | chr3_1:88822467-88822486 | Msa0385330:CDS | 75.0% | |
| GCCTCCCCAGGAAGCGGGTG+GGG | - | chr3_1:88822471-88822490 | None:intergenic | 75.0% | |
| GGCCTCCCCAGGAAGCGGGT+GGG | - | chr3_1:88822472-88822491 | None:intergenic | 75.0% | |
| GCCCCAGAAACGGCCTCCCC+AGG | - | chr3_1:88822483-88822502 | None:intergenic | 75.0% | |
| ! | CGGCCTCCCCAGGAAGCGGG+TGG | - | chr3_1:88822473-88822492 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88822147 | 88824780 | 88822147 | ID=Msa0385330;Name=Msa0385330 |
| chr3_1 | mRNA | 88822147 | 88824780 | 88822147 | ID=Msa0385330-mRNA-1;Parent=Msa0385330;Name=Msa0385330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=122|1|1|1|1|1|2|369|325 |
| chr3_1 | exon | 88822147 | 88823035 | 88822147 | ID=Msa0385330-mRNA-1:exon:24041;Parent=Msa0385330-mRNA-1 |
| chr3_1 | exon | 88824201 | 88824780 | 88824201 | ID=Msa0385330-mRNA-1:exon:24042;Parent=Msa0385330-mRNA-1 |
| chr3_1 | five_prime_UTR | 88822147 | 88822268 | 88822147 | ID=Msa0385330-mRNA-1:five_prime_utr;Parent=Msa0385330-mRNA-1 |
| chr3_1 | CDS | 88822269 | 88823035 | 88822269 | ID=Msa0385330-mRNA-1:cds;Parent=Msa0385330-mRNA-1 |
| chr3_1 | CDS | 88824201 | 88824411 | 88824201 | ID=Msa0385330-mRNA-1:cds;Parent=Msa0385330-mRNA-1 |
| chr3_1 | three_prime_UTR | 88824412 | 88824780 | 88824412 | ID=Msa0385330-mRNA-1:three_prime_utr;Parent=Msa0385330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
