Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523070 | XP_024635613.2 | 97.546 | 326 | 7 | 1 | 1 | 325 | 1 | 326 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523070 | sp|A0A1P8B554|THLP1_ARATH | 60.000 | 245 | 86 | 4 | 12 | 250 | 19 | 257 | 4.91e-92 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523070 | A0A396IZC8 | 97.546 | 326 | 7 | 1 | 1 | 325 | 1 | 326 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385330 | Msa0523070 | 0.973320 | 3.146021e-136 | -8.615850e-47 |
| Msa0523070 | Msa0580390 | 0.804701 | 1.903772e-49 | -8.615850e-47 |
| Msa0523070 | Msa0654020 | -0.820892 | 5.393473e-53 | -8.615850e-47 |
| Msa0523070 | Msa0736500 | 0.811584 | 6.507821e-51 | -8.615850e-47 |
| Msa0523070 | Msa0815590 | 0.805921 | 1.056674e-49 | -8.615850e-47 |
| Msa0523070 | Msa1132860 | 0.802584 | 5.234725e-49 | -8.615850e-47 |
| Msa0523070 | Msa1346000 | 0.940333 | 2.790584e-100 | -8.615850e-47 |
| Msa0523070 | Msa1383780 | 0.928805 | 1.715048e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523070 | MtrunA17_Chr3g0142781 | 97.546 | 326 | 7 | 1 | 1 | 325 | 1 | 326 | 0.0 | 642 |
| Msa0523070 | MtrunA17_Chr1g0156711 | 75.076 | 329 | 70 | 7 | 1 | 323 | 1 | 323 | 5.84e-173 | 482 |
| Msa0523070 | MtrunA17_Chr5g0405581 | 68.199 | 261 | 78 | 4 | 8 | 265 | 8 | 266 | 8.54e-120 | 347 |
| Msa0523070 | MtrunA17_Chr8g0352471 | 67.194 | 253 | 78 | 4 | 9 | 259 | 9 | 258 | 1.19e-115 | 337 |
| Msa0523070 | MtrunA17_Chr8g0371781 | 68.254 | 252 | 72 | 4 | 19 | 265 | 21 | 269 | 1.57e-114 | 333 |
| Msa0523070 | MtrunA17_Chr8g0357311 | 67.083 | 240 | 75 | 3 | 10 | 248 | 10 | 246 | 7.90e-112 | 325 |
| Msa0523070 | MtrunA17_Chr4g0037351 | 63.374 | 243 | 86 | 3 | 8 | 248 | 6 | 247 | 4.48e-106 | 313 |
| Msa0523070 | MtrunA17_Chr4g0037331 | 54.296 | 291 | 124 | 6 | 1 | 291 | 1 | 282 | 1.55e-96 | 289 |
| Msa0523070 | MtrunA17_Chr8g0371771 | 58.130 | 246 | 93 | 5 | 3 | 248 | 8 | 243 | 3.65e-92 | 276 |
| Msa0523070 | MtrunA17_Chr7g0265011 | 53.386 | 251 | 113 | 4 | 1 | 251 | 43 | 289 | 7.57e-90 | 270 |
| Msa0523070 | MtrunA17_Chr5g0405611 | 55.224 | 268 | 107 | 7 | 14 | 279 | 82 | 338 | 8.35e-88 | 268 |
| Msa0523070 | MtrunA17_Chr2g0311561 | 55.652 | 230 | 98 | 3 | 20 | 248 | 5 | 231 | 5.11e-85 | 258 |
| Msa0523070 | MtrunA17_Chr5g0428801 | 52.400 | 250 | 113 | 5 | 7 | 253 | 8 | 254 | 6.22e-85 | 258 |
| Msa0523070 | MtrunA17_Chr2g0311521 | 53.696 | 257 | 110 | 6 | 11 | 262 | 8 | 260 | 2.37e-84 | 274 |
| Msa0523070 | MtrunA17_Chr8g0351851 | 52.245 | 245 | 109 | 6 | 4 | 248 | 1 | 237 | 3.45e-80 | 243 |
| Msa0523070 | MtrunA17_Chr1g0180121 | 51.639 | 244 | 111 | 4 | 9 | 248 | 1 | 241 | 1.01e-79 | 243 |
| Msa0523070 | MtrunA17_Chr2g0312181 | 50.628 | 239 | 115 | 3 | 11 | 248 | 6 | 242 | 3.89e-79 | 241 |
| Msa0523070 | MtrunA17_Chr6g0482741 | 50.413 | 242 | 115 | 4 | 7 | 248 | 3 | 239 | 2.87e-78 | 239 |
| Msa0523070 | MtrunA17_Chr2g0311551 | 51.837 | 245 | 112 | 5 | 20 | 262 | 17 | 257 | 3.30e-78 | 257 |
| Msa0523070 | MtrunA17_Chr1g0154591 | 54.852 | 237 | 97 | 7 | 16 | 248 | 1 | 231 | 3.53e-78 | 238 |
| Msa0523070 | MtrunA17_Chr1g0180221 | 50.198 | 253 | 120 | 4 | 1 | 250 | 34 | 283 | 1.05e-77 | 239 |
| Msa0523070 | MtrunA17_Chr1g0179851 | 51.639 | 244 | 109 | 5 | 11 | 250 | 2 | 240 | 1.50e-77 | 237 |
| Msa0523070 | MtrunA17_Chr1g0179891 | 52.049 | 244 | 110 | 5 | 7 | 250 | 2 | 238 | 2.24e-77 | 236 |
| Msa0523070 | MtrunA17_Chr1g0180231 | 52.033 | 246 | 113 | 4 | 5 | 250 | 3 | 243 | 9.38e-77 | 235 |
| Msa0523070 | MtrunA17_Chr1g0179871 | 52.033 | 246 | 113 | 4 | 5 | 250 | 3 | 243 | 9.38e-77 | 235 |
| Msa0523070 | MtrunA17_Chr1g0180161 | 53.571 | 224 | 101 | 3 | 29 | 252 | 25 | 245 | 1.22e-76 | 235 |
| Msa0523070 | MtrunA17_Chr3g0141341 | 54.911 | 224 | 95 | 6 | 26 | 248 | 12 | 230 | 1.29e-73 | 227 |
| Msa0523070 | MtrunA17_Chr8g0392961 | 49.388 | 245 | 119 | 4 | 4 | 248 | 5 | 244 | 1.43e-72 | 224 |
| Msa0523070 | MtrunA17_Chr6g0452331 | 45.669 | 254 | 129 | 7 | 1 | 248 | 1 | 251 | 6.29e-65 | 206 |
| Msa0523070 | MtrunA17_Chr3g0112091 | 47.083 | 240 | 120 | 7 | 11 | 248 | 2 | 236 | 1.13e-63 | 201 |
| Msa0523070 | MtrunA17_Chr5g0424221 | 46.154 | 247 | 121 | 8 | 3 | 249 | 6 | 240 | 4.31e-63 | 201 |
| Msa0523070 | MtrunA17_Chr7g0239131 | 46.586 | 249 | 124 | 7 | 1 | 248 | 1 | 241 | 1.17e-61 | 196 |
| Msa0523070 | MtrunA17_Chr2g0311531 | 47.009 | 234 | 94 | 8 | 21 | 253 | 22 | 226 | 3.00e-59 | 190 |
| Msa0523070 | MtrunA17_Chr4g0031221 | 43.210 | 243 | 126 | 8 | 11 | 249 | 18 | 252 | 3.29e-59 | 190 |
| Msa0523070 | MtrunA17_Chr5g0406771 | 52.000 | 175 | 79 | 3 | 16 | 187 | 3 | 175 | 1.34e-53 | 173 |
| Msa0523070 | MtrunA17_Chr5g0397831 | 41.935 | 248 | 115 | 8 | 9 | 248 | 9 | 235 | 3.80e-51 | 169 |
| Msa0523070 | MtrunA17_Chr2g0311501 | 46.032 | 189 | 93 | 7 | 69 | 253 | 3 | 186 | 1.05e-49 | 164 |
| Msa0523070 | MtrunA17_Chr5g0397821 | 39.556 | 225 | 112 | 7 | 25 | 248 | 23 | 224 | 8.46e-46 | 155 |
| Msa0523070 | MtrunA17_Chr8g0386341 | 39.024 | 246 | 122 | 9 | 6 | 248 | 27 | 247 | 3.99e-45 | 154 |
| Msa0523070 | MtrunA17_Chr2g0309611 | 31.250 | 256 | 160 | 6 | 1 | 247 | 1 | 249 | 5.15e-39 | 138 |
| Msa0523070 | MtrunA17_Chr1g0179911 | 30.116 | 259 | 149 | 9 | 2 | 250 | 3 | 239 | 1.21e-29 | 113 |
| Msa0523070 | MtrunA17_Chr8g0386351 | 43.662 | 142 | 66 | 6 | 1 | 141 | 43 | 171 | 2.57e-26 | 103 |
| Msa0523070 | MtrunA17_Chr1g0180181 | 55.814 | 86 | 37 | 1 | 167 | 252 | 18 | 102 | 1.69e-24 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523070 | AT1G75800.1 | 60.597 | 335 | 113 | 5 | 4 | 325 | 1 | 329 | 2.69e-137 | 392 |
| Msa0523070 | AT1G20030.2 | 64.379 | 306 | 101 | 4 | 22 | 325 | 16 | 315 | 2.11e-133 | 382 |
| Msa0523070 | AT1G20030.1 | 64.145 | 304 | 101 | 4 | 24 | 325 | 1 | 298 | 3.95e-132 | 378 |
| Msa0523070 | AT4G36010.1 | 63.433 | 268 | 83 | 7 | 22 | 278 | 19 | 282 | 6.29e-111 | 324 |
| Msa0523070 | AT4G36010.2 | 63.433 | 268 | 83 | 7 | 22 | 278 | 19 | 282 | 6.29e-111 | 324 |
| Msa0523070 | AT2G17860.1 | 63.673 | 245 | 84 | 4 | 10 | 250 | 7 | 250 | 3.11e-105 | 308 |
| Msa0523070 | AT4G38670.3 | 54.386 | 285 | 119 | 4 | 4 | 287 | 1 | 275 | 5.86e-105 | 308 |
| Msa0523070 | AT4G38670.1 | 54.386 | 285 | 119 | 4 | 4 | 287 | 1 | 275 | 5.86e-105 | 308 |
| Msa0523070 | AT4G38670.2 | 63.043 | 230 | 84 | 1 | 20 | 248 | 1 | 230 | 3.08e-103 | 303 |
| Msa0523070 | AT4G38660.1 | 56.089 | 271 | 108 | 5 | 3 | 273 | 7 | 266 | 1.73e-95 | 287 |
| Msa0523070 | AT4G24180.1 | 57.778 | 270 | 99 | 5 | 12 | 275 | 19 | 279 | 3.03e-94 | 282 |
| Msa0523070 | AT4G24180.2 | 56.475 | 278 | 106 | 5 | 4 | 275 | 6 | 274 | 3.43e-94 | 282 |
| Msa0523070 | AT4G38660.2 | 59.055 | 254 | 93 | 5 | 20 | 273 | 2 | 244 | 1.37e-93 | 281 |
| Msa0523070 | AT4G24180.5 | 58.498 | 253 | 93 | 4 | 4 | 250 | 6 | 252 | 4.71e-93 | 277 |
| Msa0523070 | AT4G24180.6 | 60.000 | 245 | 86 | 4 | 12 | 250 | 19 | 257 | 4.99e-93 | 277 |
| Msa0523070 | AT5G38280.1 | 53.360 | 253 | 116 | 2 | 11 | 261 | 10 | 262 | 1.10e-92 | 289 |
| Msa0523070 | AT5G38280.2 | 53.360 | 253 | 116 | 2 | 11 | 261 | 10 | 262 | 2.90e-92 | 288 |
| Msa0523070 | AT4G24180.3 | 58.772 | 228 | 83 | 3 | 12 | 233 | 19 | 241 | 4.91e-85 | 259 |
| Msa0523070 | AT4G24180.4 | 57.203 | 236 | 90 | 3 | 4 | 233 | 6 | 236 | 7.39e-85 | 259 |
| Msa0523070 | AT5G24620.1 | 50.368 | 272 | 118 | 6 | 13 | 279 | 12 | 271 | 9.82e-82 | 254 |
| Msa0523070 | AT1G19320.1 | 55.020 | 249 | 101 | 7 | 5 | 249 | 6 | 247 | 2.50e-81 | 247 |
| Msa0523070 | AT5G24620.3 | 50.368 | 272 | 118 | 6 | 13 | 279 | 88 | 347 | 2.71e-81 | 255 |
| Msa0523070 | AT5G24620.4 | 50.368 | 272 | 118 | 6 | 13 | 279 | 67 | 326 | 2.88e-81 | 254 |
| Msa0523070 | AT1G75040.1 | 54.733 | 243 | 101 | 7 | 6 | 248 | 5 | 238 | 4.09e-80 | 244 |
| Msa0523070 | AT1G75050.1 | 52.227 | 247 | 113 | 5 | 6 | 252 | 5 | 246 | 4.86e-80 | 244 |
| Msa0523070 | AT1G75030.1 | 51.429 | 245 | 111 | 7 | 7 | 248 | 3 | 242 | 4.98e-77 | 236 |
| Msa0523070 | AT1G18250.2 | 51.528 | 229 | 106 | 4 | 25 | 253 | 21 | 244 | 3.83e-75 | 231 |
| Msa0523070 | AT1G18250.1 | 51.528 | 229 | 106 | 4 | 25 | 253 | 20 | 243 | 4.97e-75 | 231 |
| Msa0523070 | AT1G73620.1 | 52.232 | 224 | 102 | 4 | 25 | 248 | 41 | 259 | 8.14e-74 | 229 |
| Msa0523070 | AT1G77700.3 | 48.606 | 251 | 109 | 9 | 4 | 250 | 39 | 273 | 3.71e-69 | 219 |
| Msa0523070 | AT2G28790.2 | 47.036 | 253 | 126 | 7 | 1 | 249 | 26 | 274 | 7.28e-69 | 216 |
| Msa0523070 | AT1G77700.2 | 48.000 | 250 | 118 | 8 | 4 | 253 | 39 | 276 | 7.30e-69 | 218 |
| Msa0523070 | AT2G28790.1 | 47.036 | 253 | 126 | 7 | 1 | 249 | 1 | 249 | 8.78e-69 | 215 |
| Msa0523070 | AT1G77700.1 | 50.435 | 230 | 94 | 9 | 25 | 250 | 88 | 301 | 1.26e-66 | 213 |
| Msa0523070 | AT4G36000.2 | 52.889 | 225 | 81 | 8 | 102 | 323 | 1 | 203 | 1.18e-62 | 198 |
| Msa0523070 | AT4G36000.1 | 52.889 | 225 | 81 | 8 | 102 | 323 | 1 | 203 | 1.18e-62 | 198 |
| Msa0523070 | AT5G40020.1 | 45.059 | 253 | 132 | 6 | 1 | 250 | 1 | 249 | 2.01e-62 | 199 |
| Msa0523070 | AT4G18253.1 | 42.339 | 248 | 133 | 4 | 4 | 250 | 1 | 239 | 5.27e-62 | 197 |
| Msa0523070 | AT1G70250.1 | 44.351 | 239 | 120 | 6 | 24 | 256 | 143 | 374 | 1.60e-60 | 207 |
| Msa0523070 | AT4G18250.1 | 41.935 | 279 | 152 | 6 | 11 | 287 | 41 | 311 | 9.21e-60 | 203 |
| Msa0523070 | AT5G02140.2 | 44.672 | 244 | 129 | 6 | 6 | 248 | 2 | 240 | 1.09e-59 | 192 |
| Msa0523070 | AT5G02140.1 | 44.672 | 244 | 129 | 6 | 6 | 248 | 2 | 240 | 1.83e-59 | 193 |
| Msa0523070 | AT4G11650.1 | 40.650 | 246 | 121 | 8 | 4 | 248 | 1 | 222 | 1.64e-48 | 163 |
| Msa0523070 | AT5G24620.2 | 49.682 | 157 | 64 | 4 | 133 | 285 | 15 | 160 | 3.94e-39 | 140 |
| Msa0523070 | AT2G24810.1 | 58.025 | 81 | 31 | 2 | 169 | 249 | 116 | 193 | 4.60e-23 | 94.7 |
Find 131 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTGGGGAGGCCGTTTC+TGG | -0.052359 | 3_4:-76427889 | Msa0523070:CDS |
| TTCTTTCTTCTGTGGTAATT+TGG | 0.105512 | 3_4:+76428200 | None:intergenic |
| TGCTCCATTTACTTCATTTA+AGG | 0.112130 | 3_4:-76425730 | Msa0523070:three_prime_UTR |
| ATACTTAATCTTTCAATATC+AGG | 0.208828 | 3_4:-76428055 | Msa0523070:CDS |
| GCCACGTTTCCCACCAAATT+AGG | 0.242961 | 3_4:-76425924 | Msa0523070:three_prime_UTR |
| CGTGGCTCATGAACCTAATT+TGG | 0.261252 | 3_4:+76425911 | None:intergenic |
| TCTTTCTTCTGTGGTAATTT+GGG | 0.261573 | 3_4:+76428201 | None:intergenic |
| TTTAATTCATTATGCCTTCA+TGG | 0.275523 | 3_4:-76425847 | Msa0523070:three_prime_UTR |
| CAATCACCCCACCCGCTTCC+TGG | 0.293774 | 3_4:-76427904 | Msa0523070:CDS |
| CGGTGGTGTTGCGCCGTTCC+CGG | 0.299087 | 3_4:+76427784 | None:intergenic |
| GTACGAATACCGGTTGTATC+AGG | 0.300485 | 3_4:-76427640 | Msa0523070:CDS |
| TTCCTGGGGAGGCCGTTTCT+GGG | 0.311657 | 3_4:-76427888 | Msa0523070:CDS |
| CAAACCTTAAATGAAGTAAA+TGG | 0.317513 | 3_4:+76425726 | None:intergenic |
| CATTTACTTCATTTAAGGTT+TGG | 0.324477 | 3_4:-76425725 | Msa0523070:three_prime_UTR |
| AGCGGGTGGGGTGATTGATT+TGG | 0.328396 | 3_4:+76427910 | None:intergenic |
| GAGTCACTGCCATCTGATTT+CGG | 0.335928 | 3_4:+76426144 | None:intergenic |
| CCCGGAGCATTCGACTTTGC+CGG | 0.336054 | 3_4:+76427802 | None:intergenic |
| CCGGCGTTGGAGAGAATTCC+CGG | 0.381681 | 3_4:+76427980 | None:intergenic |
| TCACCTTGGGCTGTTGTTAG+TGG | 0.384731 | 3_4:+76427349 | None:intergenic |
| TTGTGATGGTAAGAATAGTT+TGG | 0.385951 | 3_4:+76426019 | None:intergenic |
| AATGAATTAAACAATGGATT+AGG | 0.389652 | 3_4:+76425859 | None:intergenic |
| GGAAAATTCTCATGTCTTAC+CGG | 0.390131 | 3_4:-76427836 | Msa0523070:CDS |
| TGTGATGGTAAGAATAGTTT+GGG | 0.391149 | 3_4:+76426020 | None:intergenic |
| GCCTCCCCAGGAAGCGGGTG+GGG | 0.392476 | 3_4:+76427898 | None:intergenic |
| TGTTGTGATATGAGAGAAGA+AGG | 0.399923 | 3_4:+76425597 | None:intergenic |
| GTAACCAGTTATAGCATTAC+CGG | 0.401599 | 3_4:+76425759 | None:intergenic |
| AATCACCCCACCCGCTTCCT+GGG | 0.417844 | 3_4:-76427903 | Msa0523070:CDS |
| CTACGCCTAAAACAATTGCT+TGG | 0.419389 | 3_4:-76425884 | Msa0523070:three_prime_UTR |
| TACGCCTAAAACAATTGCTT+GGG | 0.426462 | 3_4:-76425883 | Msa0523070:three_prime_UTR |
| TTTCCCTCAAAACTAGGTTA+AGG | 0.429188 | 3_4:-76425948 | Msa0523070:three_prime_UTR |
| CGCGTGTCCTTCAGAGCTTA+AGG | 0.433220 | 3_4:-76427606 | Msa0523070:CDS |
| TACTTAATCTTTCAATATCA+GGG | 0.436205 | 3_4:-76428054 | Msa0523070:CDS |
| ACCGGTTTCGTTCTTCAATC+CGG | 0.449618 | 3_4:-76427938 | Msa0523070:CDS |
| TATTGTTGCAGCGGCGCGTA+TGG | 0.455532 | 3_4:-76427515 | Msa0523070:CDS |
| TTGCAGTCAAAAGTCGTGGC+AGG | 0.458754 | 3_4:-76426175 | Msa0523070:intron |
| CTTAAGGTTACGAGCGTGGA+TGG | 0.458977 | 3_4:-76427590 | Msa0523070:CDS |
| GCCCCAGAAACGGCCTCCCC+AGG | 0.462616 | 3_4:+76427886 | None:intergenic |
| TTGATCAGAGTGAAATATCA+TGG | 0.466410 | 3_4:-76426068 | Msa0523070:CDS |
| CTCGAAGGTTTACAAGTGTT+AGG | 0.467705 | 3_4:+76427488 | None:intergenic |
| TTGAAAGATTAAGTATGATA+AGG | 0.468373 | 3_4:+76428062 | None:intergenic |
| AAAAGTGCTTGTGAGGCGTT+TGG | 0.468766 | 3_4:-76427548 | Msa0523070:CDS |
| CGGATATGTATGGGCCATGA+AGG | 0.481278 | 3_4:+76425833 | None:intergenic |
| ATGCAACTACACAGTCTGGC+CGG | 0.486519 | 3_4:-76427999 | Msa0523070:CDS |
| GCAAGTTCTTCTTTCTTCTG+TGG | 0.490008 | 3_4:+76428192 | None:intergenic |
| AGAGAGTGCGGCCCCAGAAA+CGG | 0.490637 | 3_4:+76427876 | None:intergenic |
| AAGCGGTGCAACGCCGGCGT+TGG | 0.494696 | 3_4:+76427967 | None:intergenic |
| TTAGCGGAATTCACTCTTGA+CGG | 0.495810 | 3_4:-76427755 | Msa0523070:CDS |
| AACACCACCGGCTACCTTAG+CGG | 0.497856 | 3_4:-76427771 | Msa0523070:CDS |
| TCCGGCAAAGTCGAATGCTC+CGG | 0.498921 | 3_4:-76427803 | Msa0523070:CDS |
| GGTTGGAAGCGGTGCAACGC+CGG | 0.499056 | 3_4:+76427961 | None:intergenic |
| CGGGAACGGCGCAACACCAC+CGG | 0.499852 | 3_4:-76427783 | Msa0523070:CDS |
| ACCCCACCCGCTTCCTGGGG+AGG | 0.502582 | 3_4:-76427899 | Msa0523070:CDS |
| TAACAACGGCTCTGGCTCAA+TGG | 0.504154 | 3_4:-76426106 | Msa0523070:CDS |
| ACAAATGCAACTACACAGTC+TGG | 0.504490 | 3_4:-76428003 | Msa0523070:CDS |
| GTAGTTCCACAAGGTGGCTC+CGG | 0.507977 | 3_4:-76427671 | Msa0523070:CDS |
| GGCTCAATGGTGTACGTTGG+TGG | 0.508308 | 3_4:-76426093 | Msa0523070:CDS |
| GTTGCACCGCTTCCAACCAC+CGG | 0.509906 | 3_4:-76427956 | Msa0523070:CDS |
| CGGCCTCCCCAGGAAGCGGG+TGG | 0.513133 | 3_4:+76427896 | None:intergenic |
| GCCGGATTGAAGAACGAAAC+CGG | 0.514473 | 3_4:+76427937 | None:intergenic |
| GAAACGGCCTCCCCAGGAAG+CGG | 0.516631 | 3_4:+76427892 | None:intergenic |
| GGCTCATGAACCTAATTTGG+TGG | 0.516773 | 3_4:+76425914 | None:intergenic |
| CCGGCAAAGTCGAATGCTCC+GGG | 0.517602 | 3_4:-76427802 | Msa0523070:CDS |
| AAACGGCCTCCCCAGGAAGC+GGG | 0.522887 | 3_4:+76427893 | None:intergenic |
| GGTGATAACTGTACGAATAC+CGG | 0.523090 | 3_4:-76427650 | Msa0523070:CDS |
| TTCGACGTGAGTTTAGTTGA+CGG | 0.526291 | 3_4:-76427713 | Msa0523070:CDS |
| CCTTGTGGAACTACAAGCAT+TGG | 0.527175 | 3_4:+76427680 | None:intergenic |
| GAATTCACTCTTGACGGATC+CGG | 0.528777 | 3_4:-76427749 | Msa0523070:CDS |
| TAAGTTCTTATATCATTACA+TGG | 0.530345 | 3_4:-76428116 | Msa0523070:exon |
| CCTCAGCTTAACAACGGCTC+TGG | 0.530822 | 3_4:-76426114 | Msa0523070:CDS |
| TCCTGGGGAGGCCGTTTCTG+GGG | 0.533325 | 3_4:-76427887 | Msa0523070:CDS |
| TGCAACTACACAGTCTGGCC+GGG | 0.533665 | 3_4:-76427998 | Msa0523070:CDS |
| CCTTGGGCTGTTGTTAGTGG+AGG | 0.540523 | 3_4:+76427352 | None:intergenic |
| GAGCAAATCCCTGATACAAC+CGG | 0.543946 | 3_4:+76427631 | None:intergenic |
| GTGAATTCCGCTAAGGTAGC+CGG | 0.545298 | 3_4:+76427764 | None:intergenic |
| GGTGATTGATTTGGAGTCGC+CGG | 0.547268 | 3_4:+76427919 | None:intergenic |
| TGCTTGTGAGGCGTTTGGAA+CGG | 0.555408 | 3_4:-76427543 | Msa0523070:CDS |
| CTCTGTTCCCAAGACTCCAC+CGG | 0.561123 | 3_4:-76427857 | Msa0523070:CDS |
| CTCGTAACCTTAAGCTCTGA+AGG | 0.561863 | 3_4:+76427599 | None:intergenic |
| CACGTTTACATGTGCTTCTG+CGG | 0.562492 | 3_4:-76427399 | Msa0523070:CDS |
| AAAGTCGAATGCTCCGGGAA+CGG | 0.563096 | 3_4:-76427797 | Msa0523070:CDS |
| ACGAAACCGGTGGTTGGAAG+CGG | 0.564357 | 3_4:+76427950 | None:intergenic |
| GGCCTCCCCAGGAAGCGGGT+GGG | 0.565175 | 3_4:+76427897 | None:intergenic |
| TTCACTCTTGACGGATCCGG+TGG | 0.567093 | 3_4:-76427746 | Msa0523070:CDS |
| ACCTAATTTGGTGGGAAACG+TGG | 0.570452 | 3_4:+76425923 | None:intergenic |
| ATCACCCCACCCGCTTCCTG+GGG | 0.571380 | 3_4:-76427902 | Msa0523070:CDS |
| AGAGCTTAAGGTTACGAGCG+TGG | 0.575561 | 3_4:-76427594 | Msa0523070:CDS |
| TACGAATACCGGTTGTATCA+GGG | 0.577024 | 3_4:-76427639 | Msa0523070:CDS |
| TGCAGTCAAAAGTCGTGGCA+GGG | 0.577535 | 3_4:-76426174 | Msa0523070:intron |
| TGAAGAACGAAACCGGTGGT+TGG | 0.582201 | 3_4:+76427944 | None:intergenic |
| GGACAAAATCCGAAATCAGA+TGG | 0.593450 | 3_4:-76426153 | Msa0523070:CDS |
| TAACCAGTTATAGCATTACC+GGG | 0.594563 | 3_4:+76425760 | None:intergenic |
| AGGTTTGGATGTAAGACATG+TGG | 0.596577 | 3_4:-76425710 | Msa0523070:three_prime_UTR |
| TTACCATCACAACGGCTATG+TGG | 0.600620 | 3_4:-76426008 | Msa0523070:CDS |
| CCGGGAATTCTCTCCAACGC+CGG | 0.602290 | 3_4:-76427980 | Msa0523070:CDS |
| CTTACCGGCGATTGTAACTC+CGG | 0.603049 | 3_4:-76427821 | Msa0523070:CDS |
| GAGCCACATAGCCGTTGTGA+TGG | 0.604066 | 3_4:+76426005 | None:intergenic |
| TGATCAGAGTGAAATATCAT+GGG | 0.606552 | 3_4:-76426067 | Msa0523070:CDS |
| TTAAGGTTACGAGCGTGGAT+GGG | 0.608209 | 3_4:-76427589 | Msa0523070:CDS |
| AACAACTCAGAATAACTCGA+AGG | 0.608498 | 3_4:+76427473 | None:intergenic |
| GGTTGTATCAGGGATTTGCT+CGG | 0.611595 | 3_4:-76427629 | Msa0523070:CDS |
| GTCAAGAGTGAATTCCGCTA+AGG | 0.614672 | 3_4:+76427757 | None:intergenic |
| CCAATGCTTGTAGTTCCACA+AGG | 0.616622 | 3_4:-76427680 | Msa0523070:CDS |
| GTTGTGATATGAGAGAAGAA+GGG | 0.617376 | 3_4:+76425598 | None:intergenic |
| GCTCATGAACCTAATTTGGT+GGG | 0.618681 | 3_4:+76425915 | None:intergenic |
| ACTTAATCTTTCAATATCAG+GGG | 0.619589 | 3_4:-76428053 | Msa0523070:CDS |
| TTATCACCGGAGCCACCTTG+TGG | 0.619692 | 3_4:+76427665 | None:intergenic |
| AGGCATAATGAATTAAACAA+TGG | 0.622637 | 3_4:+76425853 | None:intergenic |
| TCAACACAGTGAAGATCCCC+CGG | 0.623518 | 3_4:-76425778 | Msa0523070:three_prime_UTR |
| TTTGCCGGAGTTACAATCGC+CGG | 0.625708 | 3_4:+76427817 | None:intergenic |
| ACGGCACAATATTGTTGCAG+CGG | 0.630605 | 3_4:-76427524 | Msa0523070:CDS |
| GTCGAAGAAATCGAGTCCAC+CGG | 0.632997 | 3_4:+76427730 | None:intergenic |
| CCAGAGCCGTTGTTAAGCTG+AGG | 0.634119 | 3_4:+76426114 | None:intergenic |
| TCTGGCTCAATGGTGTACGT+TGG | 0.639261 | 3_4:-76426096 | Msa0523070:CDS |
| GGCGTGTAAAAGTGCTTGTG+AGG | 0.640993 | 3_4:-76427555 | Msa0523070:CDS |
| CATTTGATTAAACAAAACTG+TGG | 0.644215 | 3_4:-76425802 | Msa0523070:three_prime_UTR |
| CGTGGATGGGAAAGAGAGCG+TGG | 0.649504 | 3_4:-76427576 | Msa0523070:CDS |
| CCTCCACTAACAACAGCCCA+AGG | 0.650691 | 3_4:-76427352 | Msa0523070:intron |
| GGTATTCGTACAGTTATCAC+CGG | 0.657314 | 3_4:+76427652 | None:intergenic |
| AGAAGTGGAAAAGCTGACAC+AGG | 0.666411 | 3_4:+76425983 | None:intergenic |
| TTTCCACACATTGATACACG+TGG | 0.670795 | 3_4:+76426044 | None:intergenic |
| AACTATTCTTACCATCACAA+CGG | 0.673194 | 3_4:-76426016 | Msa0523070:CDS |
| AGTCTTGGGAACAGAGAGTG+CGG | 0.677635 | 3_4:+76427864 | None:intergenic |
| AACCAGTTATAGCATTACCG+GGG | 0.684276 | 3_4:+76425761 | None:intergenic |
| TCATCGCCTCAGCTTAACAA+CGG | 0.684947 | 3_4:-76426120 | Msa0523070:CDS |
| TAATGCTATAACTGGTTACG+AGG | 0.685018 | 3_4:-76425755 | Msa0523070:three_prime_UTR |
| GGGCCACGTGTATCAATGTG+TGG | 0.689160 | 3_4:-76426047 | Msa0523070:CDS |
| ATGCTTGTAGTTCCACAAGG+TGG | 0.691545 | 3_4:-76427677 | Msa0523070:CDS |
| TACGCGTAGCTATACGCGCG+TGG | 0.692773 | 3_4:+76427437 | None:intergenic |
| AATTCCGCTAAGGTAGCCGG+TGG | 0.692922 | 3_4:+76427767 | None:intergenic |
| ACCAGTTATAGCATTACCGG+GGG | 0.700155 | 3_4:+76425762 | None:intergenic |
| GGATTGAAGAACGAAACCGG+TGG | 0.773497 | 3_4:+76427940 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGTTTTATTTAATTCTA+TGG | + | chr3_4:76426998-76427017 | None:intergenic | 10.0% |
| !! | ATAGAATTAAATAAAACAAT+TGG | - | chr3_4:76426997-76427016 | Msa0523070:intron | 10.0% |
| !!! | TAATTGGTTTTATAAAGTAT+AGG | + | chr3_4:76426948-76426967 | None:intergenic | 15.0% |
| !!! | ATTGATAGATTTTGTATAAT+TGG | + | chr3_4:76426964-76426983 | None:intergenic | 15.0% |
| !! | TAAGTTCTTATATCATTACA+TGG | - | chr3_4:76425718-76425737 | Msa0523070:three_prime_UTR | 20.0% |
| !! | TTGAAAGATTAAGTATGATA+AGG | + | chr3_4:76425775-76425794 | None:intergenic | 20.0% |
| !! | ATACTTAATCTTTCAATATC+AGG | - | chr3_4:76425779-76425798 | Msa0523070:three_prime_UTR | 20.0% |
| !! | TACTTAATCTTTCAATATCA+GGG | - | chr3_4:76425780-76425799 | Msa0523070:three_prime_UTR | 20.0% |
| !!! | TTTTTTCTTATAAATGTGAC+CGG | + | chr3_4:76426773-76426792 | None:intergenic | 20.0% |
| !!! | TTTAGTCAAATTTCACTTTT+TGG | - | chr3_4:76427290-76427309 | Msa0523070:intron | 20.0% |
| !!! | TTAGTCAAATTTCACTTTTT+GGG | - | chr3_4:76427291-76427310 | Msa0523070:intron | 20.0% |
| !! | CTTAAAAATGAGTTTATAGA+GGG | + | chr3_4:76427534-76427553 | None:intergenic | 20.0% |
| !!! | AATGAATTAAACAATGGATT+AGG | + | chr3_4:76427978-76427997 | None:intergenic | 20.0% |
| !!! | TTTAATCAAATGAGCTTTTT+CGG | + | chr3_4:76428024-76428043 | None:intergenic | 20.0% |
| !! | TGTGGCAAAAAAATATTTAA+CGG | - | chr3_4:76428142-76428161 | Msa0523070:five_prime_UTR | 20.0% |
| ! | ATTTGGGAACAAAAAGATTA+CGG | + | chr3_4:76425620-76425639 | None:intergenic | 25.0% |
| ! | ACTTAATCTTTCAATATCAG+GGG | - | chr3_4:76425781-76425800 | Msa0523070:three_prime_UTR | 25.0% |
| ! | AGTACTAAAATAATCACCTT+GGG | + | chr3_4:76426501-76426520 | None:intergenic | 25.0% |
| ! | TAGTACTAAAATAATCACCT+TGG | + | chr3_4:76426502-76426521 | None:intergenic | 25.0% |
| !! | AATAGAGTACTAAGTAGTAA+CGG | + | chr3_4:76426664-76426683 | None:intergenic | 25.0% |
| ! | ATGTATCTAGTCACATTTAT+AGG | + | chr3_4:76426834-76426853 | None:intergenic | 25.0% |
| !!! | TTGGTTTTATAAAGTATAGG+TGG | + | chr3_4:76426945-76426964 | None:intergenic | 25.0% |
| ! | CCATATAATCAATTGAGATT+CGG | + | chr3_4:76427203-76427222 | None:intergenic | 25.0% |
| !! | AGAACTTGAGAGATTTTATT+AGG | - | chr3_4:76427418-76427437 | Msa0523070:CDS | 25.0% |
| ! | GCTTAAAAATGAGTTTATAG+AGG | + | chr3_4:76427535-76427554 | None:intergenic | 25.0% |
| ! | TTACAGAAAGAAAAGATTCT+TGG | + | chr3_4:76427610-76427629 | None:intergenic | 25.0% |
| ! | AGGCATAATGAATTAAACAA+TGG | + | chr3_4:76427984-76428003 | None:intergenic | 25.0% |
| ! | TTTAATTCATTATGCCTTCA+TGG | - | chr3_4:76427987-76428006 | Msa0523070:CDS | 25.0% |
| ! | CATTTGATTAAACAAAACTG+TGG | - | chr3_4:76428032-76428051 | Msa0523070:CDS | 25.0% |
| ! | CAAACCTTAAATGAAGTAAA+TGG | + | chr3_4:76428111-76428130 | None:intergenic | 25.0% |
| !! | CATTTACTTCATTTAAGGTT+TGG | - | chr3_4:76428109-76428128 | Msa0523070:exon | 25.0% |
| TCTTTCTTCTGTGGTAATTT+GGG | + | chr3_4:76425636-76425655 | None:intergenic | 30.0% | |
| TTCTTTCTTCTGTGGTAATT+TGG | + | chr3_4:76425637-76425656 | None:intergenic | 30.0% | |
| TTTGAATGAAGTATGAACGT+TGG | - | chr3_4:76426610-76426629 | Msa0523070:intron | 30.0% | |
| TAACTATTCTGTACTTCATC+CGG | - | chr3_4:76426751-76426770 | Msa0523070:intron | 30.0% | |
| TTACAAATCACATACTTCCT+CGG | + | chr3_4:76426905-76426924 | None:intergenic | 30.0% | |
| ! | CAATCAATTGGAGAGTATAA+AGG | + | chr3_4:76427173-76427192 | None:intergenic | 30.0% |
| CCGAATCTCAATTGATTATA+TGG | - | chr3_4:76427200-76427219 | Msa0523070:intron | 30.0% | |
| !! | GGATTAGAATTTTAGCCTTT+AGG | - | chr3_4:76427221-76427240 | Msa0523070:intron | 30.0% |
| !! | TTAGAATTTTAGCCTTTAGG+TGG | - | chr3_4:76427224-76427243 | Msa0523070:intron | 30.0% |
| !! | TTGATAATGTATCCACCTAA+AGG | + | chr3_4:76427239-76427258 | None:intergenic | 30.0% |
| CATTATCAATTAAGCACATG+TGG | - | chr3_4:76427250-76427269 | Msa0523070:intron | 30.0% | |
| !!! | TTTCACTTTTTGGGATATCA+CGG | - | chr3_4:76427300-76427319 | Msa0523070:intron | 30.0% |
| TTGATCAGAGTGAAATATCA+TGG | - | chr3_4:76427766-76427785 | Msa0523070:CDS | 30.0% | |
| TGATCAGAGTGAAATATCAT+GGG | - | chr3_4:76427767-76427786 | Msa0523070:CDS | 30.0% | |
| TGTGATGGTAAGAATAGTTT+GGG | + | chr3_4:76427817-76427836 | None:intergenic | 30.0% | |
| TTGTGATGGTAAGAATAGTT+TGG | + | chr3_4:76427818-76427837 | None:intergenic | 30.0% | |
| AACTATTCTTACCATCACAA+CGG | - | chr3_4:76427818-76427837 | Msa0523070:CDS | 30.0% | |
| AAAAATGCTGTGTTTAGAAG+TGG | + | chr3_4:76427869-76427888 | None:intergenic | 30.0% | |
| TGCTCCATTTACTTCATTTA+AGG | - | chr3_4:76428104-76428123 | Msa0523070:exon | 30.0% | |
| ! | GGTAAGACATGAGAATTTTC+CGG | + | chr3_4:76425999-76426018 | None:intergenic | 35.0% |
| GGAAAATTCTCATGTCTTAC+CGG | - | chr3_4:76425998-76426017 | Msa0523070:CDS | 35.0% | |
| AACAACTCAGAATAACTCGA+AGG | + | chr3_4:76426364-76426383 | None:intergenic | 35.0% | |
| TACTAAGTAGTAACGGTTAG+CGG | + | chr3_4:76426657-76426676 | None:intergenic | 35.0% | |
| TACAAATCACATACTTCCTC+GGG | + | chr3_4:76426904-76426923 | None:intergenic | 35.0% | |
| TCTCCTATAGTCCTATGTAT+GGG | - | chr3_4:76427077-76427096 | Msa0523070:intron | 35.0% | |
| ! | TTCGGTGTACTTCAATCAAT+TGG | + | chr3_4:76427185-76427204 | None:intergenic | 35.0% |
| GATTCTTGGCGTACATTATT+TGG | + | chr3_4:76427596-76427615 | None:intergenic | 35.0% | |
| ! | AGCATTTTTCCCTCAAAACT+AGG | - | chr3_4:76427880-76427899 | Msa0523070:CDS | 35.0% |
| TTTCCCTCAAAACTAGGTTA+AGG | - | chr3_4:76427886-76427905 | Msa0523070:CDS | 35.0% | |
| TACGCCTAAAACAATTGCTT+GGG | - | chr3_4:76427951-76427970 | Msa0523070:CDS | 35.0% | |
| !!! | GAGCTTTTTCGGATATGTAT+GGG | + | chr3_4:76428013-76428032 | None:intergenic | 35.0% |
| !!! | TGAGCTTTTTCGGATATGTA+TGG | + | chr3_4:76428014-76428033 | None:intergenic | 35.0% |
| TAACCAGTTATAGCATTACC+GGG | + | chr3_4:76428077-76428096 | None:intergenic | 35.0% | |
| GTAACCAGTTATAGCATTAC+CGG | + | chr3_4:76428078-76428097 | None:intergenic | 35.0% | |
| TAATGCTATAACTGGTTACG+AGG | - | chr3_4:76428079-76428098 | Msa0523070:CDS | 35.0% | |
| GCAAGTTCTTCTTTCTTCTG+TGG | + | chr3_4:76425645-76425664 | None:intergenic | 40.0% | |
| ACAAATGCAACTACACAGTC+TGG | - | chr3_4:76425831-76425850 | Msa0523070:three_prime_UTR | 40.0% | |
| ! | AAGACATGAGAATTTTCCGG+TGG | + | chr3_4:76425996-76426015 | None:intergenic | 40.0% |
| TTAGCGGAATTCACTCTTGA+CGG | - | chr3_4:76426079-76426098 | Msa0523070:CDS | 40.0% | |
| TTCGACGTGAGTTTAGTTGA+CGG | - | chr3_4:76426121-76426140 | Msa0523070:CDS | 40.0% | |
| GGTATTCGTACAGTTATCAC+CGG | + | chr3_4:76426185-76426204 | None:intergenic | 40.0% | |
| GGTGATAACTGTACGAATAC+CGG | - | chr3_4:76426184-76426203 | Msa0523070:intron | 40.0% | |
| ! | TACGAATACCGGTTGTATCA+GGG | - | chr3_4:76426195-76426214 | Msa0523070:intron | 40.0% |
| CTCGAAGGTTTACAAGTGTT+AGG | + | chr3_4:76426349-76426368 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCCG+AGG | - | chr3_4:76426885-76426904 | Msa0523070:intron | 40.0% | |
| AACTCTATGCTTAGCTCGAA+GGG | - | chr3_4:76427020-76427039 | Msa0523070:intron | 40.0% | |
| GGTTTATAATGCACTGCATC+TGG | - | chr3_4:76427054-76427073 | Msa0523070:intron | 40.0% | |
| GTCTCCTATAGTCCTATGTA+TGG | - | chr3_4:76427076-76427095 | Msa0523070:intron | 40.0% | |
| CAAAATCTGGTCCCATACAT+AGG | + | chr3_4:76427091-76427110 | None:intergenic | 40.0% | |
| !! | TGGGACCAGATTTTGAAGAA+AGG | - | chr3_4:76427096-76427115 | Msa0523070:intron | 40.0% |
| CCTTGCCTTTCTTCAAAATC+TGG | + | chr3_4:76427104-76427123 | None:intergenic | 40.0% | |
| !! | CCAGATTTTGAAGAAAGGCA+AGG | - | chr3_4:76427101-76427120 | Msa0523070:intron | 40.0% |
| TGAAGAAAGGCAAGGAAAAG+TGG | - | chr3_4:76427109-76427128 | Msa0523070:intron | 40.0% | |
| ! | GTTTTTGCAGTCAAAAGTCG+TGG | - | chr3_4:76427655-76427674 | Msa0523070:CDS | 40.0% |
| GGACAAAATCCGAAATCAGA+TGG | - | chr3_4:76427681-76427700 | Msa0523070:CDS | 40.0% | |
| TTTCCACACATTGATACACG+TGG | + | chr3_4:76427793-76427812 | None:intergenic | 40.0% | |
| !!! | GCTCCTTAACCTAGTTTTGA+GGG | + | chr3_4:76427892-76427911 | None:intergenic | 40.0% |
| GCTCATGAACCTAATTTGGT+GGG | + | chr3_4:76427922-76427941 | None:intergenic | 40.0% | |
| !! | TGTTTTAGGCGTAGAAAACG+TGG | + | chr3_4:76427944-76427963 | None:intergenic | 40.0% |
| CTACGCCTAAAACAATTGCT+TGG | - | chr3_4:76427950-76427969 | Msa0523070:CDS | 40.0% | |
| ! | AGGTCCCAAGCAATTGTTTT+AGG | + | chr3_4:76427958-76427977 | None:intergenic | 40.0% |
| AACCAGTTATAGCATTACCG+GGG | + | chr3_4:76428076-76428095 | None:intergenic | 40.0% | |
| AGGTTTGGATGTAAGACATG+TGG | - | chr3_4:76428124-76428143 | Msa0523070:five_prime_UTR | 40.0% | |
| ! | ACCGGTTTCGTTCTTCAATC+CGG | - | chr3_4:76425896-76425915 | Msa0523070:three_prime_UTR | 45.0% |
| ! | GAATTTTCCGGTGGAGTCTT+GGG | + | chr3_4:76425987-76426006 | None:intergenic | 45.0% |
| ! | AGAATTTTCCGGTGGAGTCT+TGG | + | chr3_4:76425988-76426007 | None:intergenic | 45.0% |
| GTCAAGAGTGAATTCCGCTA+AGG | + | chr3_4:76426080-76426099 | None:intergenic | 45.0% | |
| ! | GAATTCACTCTTGACGGATC+CGG | - | chr3_4:76426085-76426104 | Msa0523070:CDS | 45.0% |
| CCTTGTGGAACTACAAGCAT+TGG | + | chr3_4:76426157-76426176 | None:intergenic | 45.0% | |
| CCAATGCTTGTAGTTCCACA+AGG | - | chr3_4:76426154-76426173 | Msa0523070:CDS | 45.0% | |
| ATGCTTGTAGTTCCACAAGG+TGG | - | chr3_4:76426157-76426176 | Msa0523070:CDS | 45.0% | |
| ! | GTACGAATACCGGTTGTATC+AGG | - | chr3_4:76426194-76426213 | Msa0523070:intron | 45.0% |
| GAGCAAATCCCTGATACAAC+CGG | + | chr3_4:76426206-76426225 | None:intergenic | 45.0% | |
| ! | GGTTGTATCAGGGATTTGCT+CGG | - | chr3_4:76426205-76426224 | Msa0523070:intron | 45.0% |
| ! | CTCGTAACCTTAAGCTCTGA+AGG | + | chr3_4:76426238-76426257 | None:intergenic | 45.0% |
| TTAAGGTTACGAGCGTGGAT+GGG | - | chr3_4:76426245-76426264 | Msa0523070:intron | 45.0% | |
| !! | AAAAGTGCTTGTGAGGCGTT+TGG | - | chr3_4:76426286-76426305 | Msa0523070:intron | 45.0% |
| ACGGCACAATATTGTTGCAG+CGG | - | chr3_4:76426310-76426329 | Msa0523070:intron | 45.0% | |
| CACGTTTACATGTGCTTCTG+CGG | - | chr3_4:76426435-76426454 | Msa0523070:intron | 45.0% | |
| GAACTCTATGCTTAGCTCGA+AGG | - | chr3_4:76427019-76427038 | Msa0523070:intron | 45.0% | |
| GCTCGAAGGGCTACTAATAA+TGG | - | chr3_4:76427033-76427052 | Msa0523070:intron | 45.0% | |
| GGTCCCATACATAGGACTAT+AGG | + | chr3_4:76427083-76427102 | None:intergenic | 45.0% | |
| GAGTCACTGCCATCTGATTT+CGG | + | chr3_4:76427693-76427712 | None:intergenic | 45.0% | |
| TCATCGCCTCAGCTTAACAA+CGG | - | chr3_4:76427714-76427733 | Msa0523070:CDS | 45.0% | |
| TTACCATCACAACGGCTATG+TGG | - | chr3_4:76427826-76427845 | Msa0523070:CDS | 45.0% | |
| AGAAGTGGAAAAGCTGACAC+AGG | + | chr3_4:76427854-76427873 | None:intergenic | 45.0% | |
| !!! | GGCTCCTTAACCTAGTTTTG+AGG | + | chr3_4:76427893-76427912 | None:intergenic | 45.0% |
| ! | ACCTAATTTGGTGGGAAACG+TGG | + | chr3_4:76427914-76427933 | None:intergenic | 45.0% |
| GGCTCATGAACCTAATTTGG+TGG | + | chr3_4:76427923-76427942 | None:intergenic | 45.0% | |
| CGTGGCTCATGAACCTAATT+TGG | + | chr3_4:76427926-76427945 | None:intergenic | 45.0% | |
| ACCAGTTATAGCATTACCGG+GGG | + | chr3_4:76428075-76428094 | None:intergenic | 45.0% | |
| !!! | TAATTTAATGTTTTAAAAAA+CGG | + | chr3_4:76426733-76426752 | None:intergenic | 5.0% |
| ATGCAACTACACAGTCTGGC+CGG | - | chr3_4:76425835-76425854 | Msa0523070:three_prime_UTR | 50.0% | |
| TGAAGAACGAAACCGGTGGT+TGG | + | chr3_4:76425893-76425912 | None:intergenic | 50.0% | |
| GGATTGAAGAACGAAACCGG+TGG | + | chr3_4:76425897-76425916 | None:intergenic | 50.0% | |
| GCCGGATTGAAGAACGAAAC+CGG | + | chr3_4:76425900-76425919 | None:intergenic | 50.0% | |
| !! | GGTGATTGATTTGGAGTCGC+CGG | + | chr3_4:76425918-76425937 | None:intergenic | 50.0% |
| AGTCTTGGGAACAGAGAGTG+CGG | + | chr3_4:76425973-76425992 | None:intergenic | 50.0% | |
| CTTACCGGCGATTGTAACTC+CGG | - | chr3_4:76426013-76426032 | Msa0523070:CDS | 50.0% | |
| TTTGCCGGAGTTACAATCGC+CGG | + | chr3_4:76426020-76426039 | None:intergenic | 50.0% | |
| AAAGTCGAATGCTCCGGGAA+CGG | - | chr3_4:76426037-76426056 | Msa0523070:CDS | 50.0% | |
| GTGAATTCCGCTAAGGTAGC+CGG | + | chr3_4:76426073-76426092 | None:intergenic | 50.0% | |
| GTCGAAGAAATCGAGTCCAC+CGG | + | chr3_4:76426107-76426126 | None:intergenic | 50.0% | |
| AGAGCTTAAGGTTACGAGCG+TGG | - | chr3_4:76426240-76426259 | Msa0523070:intron | 50.0% | |
| CTTAAGGTTACGAGCGTGGA+TGG | - | chr3_4:76426244-76426263 | Msa0523070:intron | 50.0% | |
| !! | GGCGTGTAAAAGTGCTTGTG+AGG | - | chr3_4:76426279-76426298 | Msa0523070:intron | 50.0% |
| ! | TGCTTGTGAGGCGTTTGGAA+CGG | - | chr3_4:76426291-76426310 | Msa0523070:intron | 50.0% |
| TCACCTTGGGCTGTTGTTAG+TGG | + | chr3_4:76426488-76426507 | None:intergenic | 50.0% | |
| TTGCAGTCAAAAGTCGTGGC+AGG | - | chr3_4:76427659-76427678 | Msa0523070:CDS | 50.0% | |
| TGCAGTCAAAAGTCGTGGCA+GGG | - | chr3_4:76427660-76427679 | Msa0523070:CDS | 50.0% | |
| ! | TAACAACGGCTCTGGCTCAA+TGG | - | chr3_4:76427728-76427747 | Msa0523070:CDS | 50.0% |
| ! | TCTGGCTCAATGGTGTACGT+TGG | - | chr3_4:76427738-76427757 | Msa0523070:CDS | 50.0% |
| GCCACGTTTCCCACCAAATT+AGG | - | chr3_4:76427910-76427929 | Msa0523070:CDS | 50.0% | |
| CGGATATGTATGGGCCATGA+AGG | + | chr3_4:76428004-76428023 | None:intergenic | 50.0% | |
| TCAACACAGTGAAGATCCCC+CGG | - | chr3_4:76428056-76428075 | Msa0523070:CDS | 50.0% | |
| TCCCCCGGTAATGCTATAAC+TGG | - | chr3_4:76428071-76428090 | Msa0523070:CDS | 50.0% | |
| TGCAACTACACAGTCTGGCC+GGG | - | chr3_4:76425836-76425855 | Msa0523070:three_prime_UTR | 55.0% | |
| ACGAAACCGGTGGTTGGAAG+CGG | + | chr3_4:76425887-76425906 | None:intergenic | 55.0% | |
| AGCGGGTGGGGTGATTGATT+TGG | + | chr3_4:76425927-76425946 | None:intergenic | 55.0% | |
| CTCTGTTCCCAAGACTCCAC+CGG | - | chr3_4:76425977-76425996 | Msa0523070:exon | 55.0% | |
| TCCGGCAAAGTCGAATGCTC+CGG | - | chr3_4:76426031-76426050 | Msa0523070:CDS | 55.0% | |
| ! | AACACCACCGGCTACCTTAG+CGG | - | chr3_4:76426063-76426082 | Msa0523070:CDS | 55.0% |
| AATTCCGCTAAGGTAGCCGG+TGG | + | chr3_4:76426070-76426089 | None:intergenic | 55.0% | |
| ! | TTCACTCTTGACGGATCCGG+TGG | - | chr3_4:76426088-76426107 | Msa0523070:CDS | 55.0% |
| GTAGTTCCACAAGGTGGCTC+CGG | - | chr3_4:76426163-76426182 | Msa0523070:CDS | 55.0% | |
| TTATCACCGGAGCCACCTTG+TGG | + | chr3_4:76426172-76426191 | None:intergenic | 55.0% | |
| CGCGTGTCCTTCAGAGCTTA+AGG | - | chr3_4:76426228-76426247 | Msa0523070:intron | 55.0% | |
| TATTGTTGCAGCGGCGCGTA+TGG | - | chr3_4:76426319-76426338 | Msa0523070:intron | 55.0% | |
| CCTTGGGCTGTTGTTAGTGG+AGG | + | chr3_4:76426485-76426504 | None:intergenic | 55.0% | |
| CCTCCACTAACAACAGCCCA+AGG | - | chr3_4:76426482-76426501 | Msa0523070:intron | 55.0% | |
| CCAGAGCCGTTGTTAAGCTG+AGG | + | chr3_4:76427723-76427742 | None:intergenic | 55.0% | |
| CCTCAGCTTAACAACGGCTC+TGG | - | chr3_4:76427720-76427739 | Msa0523070:CDS | 55.0% | |
| GGCTCAATGGTGTACGTTGG+TGG | - | chr3_4:76427741-76427760 | Msa0523070:CDS | 55.0% | |
| GGGCCACGTGTATCAATGTG+TGG | - | chr3_4:76427787-76427806 | Msa0523070:CDS | 55.0% | |
| GAGCCACATAGCCGTTGTGA+TGG | + | chr3_4:76427832-76427851 | None:intergenic | 55.0% | |
| ! | CCGGCGTTGGAGAGAATTCC+CGG | + | chr3_4:76425857-76425876 | None:intergenic | 60.0% |
| CCGGGAATTCTCTCCAACGC+CGG | - | chr3_4:76425854-76425873 | Msa0523070:three_prime_UTR | 60.0% | |
| GTTGCACCGCTTCCAACCAC+CGG | - | chr3_4:76425878-76425897 | Msa0523070:three_prime_UTR | 60.0% | |
| AATCACCCCACCCGCTTCCT+GGG | - | chr3_4:76425931-76425950 | Msa0523070:three_prime_UTR | 60.0% | |
| TTCCTGGGGAGGCCGTTTCT+GGG | - | chr3_4:76425946-76425965 | Msa0523070:three_prime_UTR | 60.0% | |
| ! | AGAGAGTGCGGCCCCAGAAA+CGG | + | chr3_4:76425961-76425980 | None:intergenic | 60.0% |
| ! | CCCGGAGCATTCGACTTTGC+CGG | + | chr3_4:76426035-76426054 | None:intergenic | 60.0% |
| CCGGCAAAGTCGAATGCTCC+GGG | - | chr3_4:76426032-76426051 | Msa0523070:CDS | 60.0% | |
| CGTGGATGGGAAAGAGAGCG+TGG | - | chr3_4:76426258-76426277 | Msa0523070:intron | 60.0% | |
| TACGCGTAGCTATACGCGCG+TGG | + | chr3_4:76426400-76426419 | None:intergenic | 60.0% | |
| GGTTGGAAGCGGTGCAACGC+CGG | + | chr3_4:76425876-76425895 | None:intergenic | 65.0% | |
| CAATCACCCCACCCGCTTCC+TGG | - | chr3_4:76425930-76425949 | Msa0523070:three_prime_UTR | 65.0% | |
| ATCACCCCACCCGCTTCCTG+GGG | - | chr3_4:76425932-76425951 | Msa0523070:three_prime_UTR | 65.0% | |
| AAACGGCCTCCCCAGGAAGC+GGG | + | chr3_4:76425944-76425963 | None:intergenic | 65.0% | |
| GAAACGGCCTCCCCAGGAAG+CGG | + | chr3_4:76425945-76425964 | None:intergenic | 65.0% | |
| CTTCCTGGGGAGGCCGTTTC+TGG | - | chr3_4:76425945-76425964 | Msa0523070:three_prime_UTR | 65.0% | |
| TCCTGGGGAGGCCGTTTCTG+GGG | - | chr3_4:76425947-76425966 | Msa0523070:three_prime_UTR | 65.0% | |
| AAGCGGTGCAACGCCGGCGT+TGG | + | chr3_4:76425870-76425889 | None:intergenic | 70.0% | |
| !! | CGGTGGTGTTGCGCCGTTCC+CGG | + | chr3_4:76426053-76426072 | None:intergenic | 70.0% |
| CGGGAACGGCGCAACACCAC+CGG | - | chr3_4:76426051-76426070 | Msa0523070:CDS | 70.0% | |
| ACCCCACCCGCTTCCTGGGG+AGG | - | chr3_4:76425935-76425954 | Msa0523070:three_prime_UTR | 75.0% | |
| GCCTCCCCAGGAAGCGGGTG+GGG | + | chr3_4:76425939-76425958 | None:intergenic | 75.0% | |
| GGCCTCCCCAGGAAGCGGGT+GGG | + | chr3_4:76425940-76425959 | None:intergenic | 75.0% | |
| GCCCCAGAAACGGCCTCCCC+AGG | + | chr3_4:76425951-76425970 | None:intergenic | 75.0% | |
| ! | CGGCCTCCCCAGGAAGCGGG+TGG | + | chr3_4:76425941-76425960 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 76425612 | 76428244 | 76425612 | ID=Msa0523070;Name=Msa0523070 |
| chr3_4 | mRNA | 76425612 | 76428244 | 76425612 | ID=Msa0523070-mRNA-1;Parent=Msa0523070;Name=Msa0523070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=125|1|1|1|1|1|2|369|325 |
| chr3_4 | exon | 76425612 | 76426191 | 76425612 | ID=Msa0523070-mRNA-1:exon:22161;Parent=Msa0523070-mRNA-1 |
| chr3_4 | exon | 76427353 | 76428244 | 76427353 | ID=Msa0523070-mRNA-1:exon:22160;Parent=Msa0523070-mRNA-1 |
| chr3_4 | five_prime_UTR | 76428120 | 76428244 | 76428120 | ID=Msa0523070-mRNA-1:five_prime_utr;Parent=Msa0523070-mRNA-1 |
| chr3_4 | CDS | 76427353 | 76428119 | 76427353 | ID=Msa0523070-mRNA-1:cds;Parent=Msa0523070-mRNA-1 |
| chr3_4 | CDS | 76425981 | 76426191 | 76425981 | ID=Msa0523070-mRNA-1:cds;Parent=Msa0523070-mRNA-1 |
| chr3_4 | three_prime_UTR | 76425612 | 76425980 | 76425612 | ID=Msa0523070-mRNA-1:three_prime_utr;Parent=Msa0523070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
