Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392300 | XP_003592883.2 | 97.328 | 262 | 0 | 1 | 114 | 375 | 139 | 393 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392300 | G7IL64 | 97.328 | 262 | 0 | 1 | 114 | 375 | 139 | 393 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1375030 | Msa1392300 | 0.939967 | 5.206331e-100 | -8.615850e-47 |
| Msa1392300 | Msa1440560 | 0.800303 | 1.535719e-48 | -8.615850e-47 |
| Msa0790550 | Msa1392300 | 0.972627 | 4.476244e-135 | -8.615850e-47 |
| Msa1278660 | Msa1392300 | 0.810000 | 1.432740e-50 | -8.615850e-47 |
| Msa0999680 | Msa1392300 | 0.808261 | 3.378645e-50 | -8.615850e-47 |
| Msa0270060 | Msa1392300 | 0.961963 | 2.578869e-120 | -8.615850e-47 |
| Msa0551810 | Msa1392300 | 0.806138 | 9.516002e-50 | -8.615850e-47 |
| Msa0965080 | Msa1392300 | 0.802347 | 5.856500e-49 | -8.615850e-47 |
| Msa0965290 | Msa1392300 | 0.804830 | 1.789510e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392300 | MtrunA17_Chr2g0276851 | 97.328 | 262 | 0 | 1 | 114 | 375 | 139 | 393 | 0.0 | 540 |
| Msa1392300 | MtrunA17_Chr2g0276851 | 97.917 | 48 | 1 | 0 | 64 | 111 | 1 | 48 | 5.71e-14 | 72.8 |
| Msa1392300 | MtrunA17_Chr1g0189401 | 61.811 | 254 | 92 | 2 | 114 | 366 | 142 | 391 | 3.51e-117 | 345 |
| Msa1392300 | MtrunA17_Chr2g0281421 | 58.366 | 257 | 105 | 1 | 114 | 368 | 138 | 394 | 1.33e-111 | 332 |
| Msa1392300 | MtrunA17_Chr4g0047961 | 51.389 | 288 | 134 | 2 | 79 | 366 | 83 | 364 | 2.84e-107 | 319 |
| Msa1392300 | MtrunA17_Chr7g0227041 | 46.914 | 243 | 112 | 4 | 114 | 356 | 164 | 389 | 7.67e-71 | 227 |
| Msa1392300 | MtrunA17_Chr3g0123571 | 46.473 | 241 | 123 | 5 | 90 | 330 | 135 | 369 | 2.91e-69 | 223 |
| Msa1392300 | MtrunA17_Chr8g0381611 | 52.821 | 195 | 87 | 4 | 114 | 308 | 149 | 338 | 8.31e-68 | 219 |
| Msa1392300 | MtrunA17_Chr8g0381601 | 47.005 | 217 | 110 | 4 | 114 | 330 | 157 | 368 | 4.46e-66 | 214 |
| Msa1392300 | MtrunA17_Chr4g0028891 | 44.856 | 243 | 116 | 6 | 114 | 356 | 178 | 402 | 3.86e-63 | 207 |
| Msa1392300 | MtrunA17_Chr2g0326801 | 43.443 | 244 | 120 | 6 | 114 | 357 | 154 | 379 | 3.76e-62 | 204 |
| Msa1392300 | MtrunA17_Chr3g0095271 | 44.872 | 78 | 20 | 2 | 189 | 265 | 6 | 61 | 3.70e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392300 | AT4G18530.3 | 68.359 | 256 | 77 | 1 | 114 | 365 | 129 | 384 | 7.63e-133 | 385 |
| Msa1392300 | AT4G18530.1 | 68.359 | 256 | 77 | 1 | 114 | 365 | 134 | 389 | 8.65e-133 | 385 |
| Msa1392300 | AT4G12840.3 | 61.538 | 260 | 93 | 1 | 114 | 366 | 41 | 300 | 4.69e-123 | 357 |
| Msa1392300 | AT4G12840.2 | 61.538 | 260 | 93 | 1 | 114 | 366 | 135 | 394 | 8.79e-123 | 360 |
| Msa1392300 | AT4G12840.1 | 61.538 | 260 | 93 | 1 | 114 | 366 | 135 | 394 | 1.17e-122 | 360 |
| Msa1392300 | AT1G11170.1 | 53.261 | 276 | 128 | 1 | 90 | 364 | 119 | 394 | 9.85e-104 | 313 |
| Msa1392300 | AT1G11170.6 | 53.261 | 276 | 128 | 1 | 90 | 364 | 119 | 394 | 9.85e-104 | 313 |
| Msa1392300 | AT1G11170.5 | 53.261 | 276 | 128 | 1 | 90 | 364 | 119 | 394 | 9.85e-104 | 313 |
| Msa1392300 | AT1G11170.7 | 53.261 | 276 | 128 | 1 | 90 | 364 | 119 | 394 | 9.85e-104 | 313 |
| Msa1392300 | AT4G18530.2 | 77.778 | 171 | 38 | 0 | 114 | 284 | 134 | 304 | 1.79e-100 | 300 |
| Msa1392300 | AT1G61240.8 | 54.331 | 254 | 112 | 2 | 113 | 363 | 72 | 324 | 1.01e-99 | 300 |
| Msa1392300 | AT1G61240.4 | 54.331 | 254 | 112 | 2 | 113 | 363 | 139 | 391 | 3.93e-99 | 301 |
| Msa1392300 | AT1G61240.5 | 54.331 | 254 | 112 | 2 | 113 | 363 | 139 | 391 | 3.93e-99 | 301 |
| Msa1392300 | AT1G61240.6 | 54.331 | 254 | 112 | 2 | 113 | 363 | 139 | 391 | 3.93e-99 | 301 |
| Msa1392300 | AT1G61240.2 | 54.331 | 254 | 112 | 2 | 113 | 363 | 139 | 391 | 3.93e-99 | 301 |
| Msa1392300 | AT1G61240.1 | 54.331 | 254 | 112 | 2 | 113 | 363 | 139 | 391 | 3.93e-99 | 301 |
| Msa1392300 | AT1G61240.3 | 54.331 | 254 | 112 | 2 | 113 | 363 | 139 | 391 | 3.93e-99 | 301 |
| Msa1392300 | AT1G11170.4 | 58.824 | 221 | 91 | 0 | 90 | 310 | 119 | 339 | 2.62e-94 | 286 |
| Msa1392300 | AT1G11170.8 | 58.824 | 221 | 91 | 0 | 90 | 310 | 119 | 339 | 2.62e-94 | 286 |
| Msa1392300 | AT1G11170.3 | 58.824 | 221 | 91 | 0 | 90 | 310 | 119 | 339 | 3.12e-94 | 286 |
| Msa1392300 | AT1G61240.7 | 54.894 | 235 | 93 | 1 | 113 | 347 | 139 | 360 | 7.50e-92 | 280 |
| Msa1392300 | AT1G11170.2 | 56.923 | 195 | 84 | 0 | 90 | 284 | 119 | 313 | 1.18e-78 | 245 |
| Msa1392300 | AT3G27470.2 | 47.737 | 243 | 109 | 5 | 114 | 356 | 157 | 381 | 3.15e-70 | 226 |
| Msa1392300 | AT3G27470.1 | 47.737 | 243 | 109 | 5 | 114 | 356 | 157 | 381 | 3.15e-70 | 226 |
| Msa1392300 | AT3G27470.4 | 47.737 | 243 | 109 | 5 | 114 | 356 | 157 | 381 | 3.15e-70 | 226 |
| Msa1392300 | AT3G27470.3 | 47.737 | 243 | 109 | 5 | 114 | 356 | 157 | 381 | 3.15e-70 | 226 |
| Msa1392300 | AT3G26440.3 | 50.233 | 215 | 102 | 4 | 114 | 328 | 156 | 365 | 5.79e-70 | 224 |
| Msa1392300 | AT3G27470.5 | 47.737 | 243 | 109 | 5 | 114 | 356 | 157 | 381 | 5.91e-70 | 225 |
| Msa1392300 | AT3G26440.1 | 46.721 | 244 | 112 | 5 | 114 | 357 | 156 | 381 | 6.38e-70 | 224 |
| Msa1392300 | AT3G26440.2 | 46.721 | 244 | 112 | 5 | 114 | 357 | 156 | 381 | 6.38e-70 | 224 |
| Msa1392300 | AT3G26440.4 | 46.721 | 244 | 112 | 5 | 114 | 357 | 132 | 357 | 6.90e-70 | 224 |
| Msa1392300 | AT3G26440.5 | 46.721 | 244 | 112 | 5 | 114 | 357 | 179 | 404 | 7.96e-70 | 225 |
| Msa1392300 | AT3G26440.6 | 46.721 | 244 | 112 | 5 | 114 | 357 | 179 | 404 | 8.31e-70 | 225 |
| Msa1392300 | AT1G13000.2 | 52.941 | 204 | 89 | 5 | 114 | 317 | 165 | 361 | 1.51e-69 | 224 |
| Msa1392300 | AT1G13000.5 | 52.941 | 204 | 89 | 5 | 114 | 317 | 165 | 361 | 1.51e-69 | 224 |
| Msa1392300 | AT1G13000.4 | 52.941 | 204 | 89 | 5 | 114 | 317 | 165 | 361 | 1.51e-69 | 224 |
| Msa1392300 | AT1G13000.1 | 52.941 | 204 | 89 | 5 | 114 | 317 | 165 | 361 | 1.51e-69 | 224 |
| Msa1392300 | AT1G08040.3 | 46.288 | 229 | 118 | 4 | 102 | 330 | 132 | 355 | 2.24e-66 | 215 |
| Msa1392300 | AT1G08040.2 | 46.288 | 229 | 118 | 4 | 102 | 330 | 136 | 359 | 2.78e-66 | 215 |
| Msa1392300 | AT1G08040.4 | 46.288 | 229 | 118 | 4 | 102 | 330 | 136 | 359 | 2.78e-66 | 215 |
| Msa1392300 | AT1G08040.1 | 46.288 | 229 | 118 | 4 | 102 | 330 | 136 | 359 | 2.78e-66 | 215 |
| Msa1392300 | AT1G24570.1 | 43.019 | 265 | 128 | 6 | 114 | 375 | 137 | 381 | 1.47e-65 | 213 |
| Msa1392300 | AT1G24570.2 | 43.019 | 265 | 128 | 6 | 114 | 375 | 144 | 388 | 1.93e-65 | 213 |
| Msa1392300 | AT2G28310.2 | 44.262 | 244 | 118 | 5 | 114 | 357 | 141 | 366 | 3.54e-65 | 212 |
| Msa1392300 | AT2G28310.1 | 44.262 | 244 | 118 | 5 | 114 | 357 | 141 | 366 | 3.54e-65 | 212 |
| Msa1392300 | AT2G28310.3 | 44.262 | 244 | 118 | 5 | 114 | 357 | 141 | 366 | 3.54e-65 | 212 |
| Msa1392300 | AT1G67850.4 | 50.490 | 204 | 94 | 5 | 114 | 317 | 145 | 341 | 5.67e-65 | 212 |
| Msa1392300 | AT1G67850.6 | 50.490 | 204 | 94 | 5 | 114 | 317 | 161 | 357 | 1.13e-64 | 211 |
| Msa1392300 | AT1G67850.7 | 50.490 | 204 | 94 | 5 | 114 | 317 | 161 | 357 | 1.13e-64 | 211 |
| Msa1392300 | AT1G67850.1 | 50.490 | 204 | 94 | 5 | 114 | 317 | 161 | 357 | 1.13e-64 | 211 |
| Msa1392300 | AT1G67850.3 | 50.490 | 204 | 94 | 5 | 114 | 317 | 161 | 357 | 1.13e-64 | 211 |
| Msa1392300 | AT1G67850.2 | 50.490 | 204 | 94 | 5 | 114 | 317 | 161 | 357 | 1.13e-64 | 211 |
| Msa1392300 | AT1G67850.5 | 50.490 | 204 | 94 | 5 | 114 | 317 | 161 | 357 | 1.13e-64 | 211 |
| Msa1392300 | AT1G13000.3 | 54.386 | 171 | 74 | 3 | 114 | 284 | 165 | 331 | 4.14e-62 | 202 |
| Msa1392300 | AT1G11170.9 | 55.639 | 133 | 59 | 0 | 90 | 222 | 119 | 251 | 4.23e-46 | 159 |
| Msa1392300 | AT2G25905.1 | 61.111 | 90 | 34 | 1 | 114 | 202 | 138 | 227 | 1.58e-32 | 122 |
Find 86 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGTACACCAATATTTA+AGG | 0.153790 | tig0021492:+80473 | None:intergenic |
| GTCTATCACTATCATCTCTA+TGG | 0.225660 | tig0021492:+80904 | None:intergenic |
| ATATTATCAAATGTTATTAT+TGG | 0.228523 | tig0021492:-80350 | Msa1392300:three_prime_UTR |
| AGAAGGTATTATAAGTTTAA+AGG | 0.258399 | tig0021492:-82003 | Msa1392300:CDS |
| TATTATCAAATGTTATTATT+GGG | 0.278405 | tig0021492:-80349 | Msa1392300:three_prime_UTR |
| ATGTCAGGGTGTTGTCTTTC+CGG | 0.282197 | tig0021492:-84630 | Msa1392300:intron |
| TCATTCATTCCCTTAAATAT+TGG | 0.290186 | tig0021492:-80483 | Msa1392300:three_prime_UTR |
| AATAACATTTGATAATATTT+CGG | 0.296138 | tig0021492:+80355 | None:intergenic |
| TTGTCTTCTTCACTCAGTTC+AGG | 0.309094 | tig0021492:-84924 | Msa1392300:CDS |
| TCATTCATCAAAATATGATA+TGG | 0.328431 | tig0021492:+80589 | None:intergenic |
| ATCTTGGCCTGCCCACTCTC+GGG | 0.330732 | tig0021492:-81199 | Msa1392300:CDS |
| GAAGAAAGGTAGGAGTATAT+TGG | 0.332630 | tig0021492:+85055 | None:intergenic |
| AAGGGAAAAGAATAAGAATA+AGG | 0.339192 | tig0021492:+84992 | None:intergenic |
| TTTGCCTGTTGTTGTTCATA+TGG | 0.345241 | tig0021492:+80708 | None:intergenic |
| CAAAATCCAAGTTCATTTCA+TGG | 0.350109 | tig0021492:-80644 | Msa1392300:three_prime_UTR |
| CATCTTGGCCTGCCCACTCT+CGG | 0.356953 | tig0021492:-81200 | Msa1392300:CDS |
| TTAAATATTGGTGTACATAA+AGG | 0.362990 | tig0021492:-80471 | Msa1392300:three_prime_UTR |
| ACTACAATTATATATTTCTC+TGG | 0.371844 | tig0021492:-83459 | Msa1392300:CDS |
| GGTGGTATAGATGTGTTAAT+AGG | 0.380200 | tig0021492:-80450 | Msa1392300:three_prime_UTR |
| TTATCTATTGTTAAAGAAGA+AGG | 0.390831 | tig0021492:-82573 | Msa1392300:CDS |
| TATTATAAGTTTAAAGGTAG+TGG | 0.396361 | tig0021492:-81997 | Msa1392300:CDS |
| ATTCTTCTTTCCTTGATTTG+CGG | 0.396540 | tig0021492:-84572 | Msa1392300:CDS |
| TTATGTACACCAATATTTAA+GGG | 0.409372 | tig0021492:+80474 | None:intergenic |
| TTGTAGTCAGCAACTATGTC+TGG | 0.429649 | tig0021492:+83475 | None:intergenic |
| CTGCTATAAATCAAACGAAA+TGG | 0.446330 | tig0021492:-83620 | Msa1392300:intron |
| AGCACCGCTCCTCCTTGCTT+AGG | 0.450748 | tig0021492:-81958 | Msa1392300:CDS |
| TGAATGACTGAAATCACAAA+AGG | 0.455900 | tig0021492:+80499 | None:intergenic |
| CTCTGAAGGTCAGTGTAAAT+AGG | 0.456682 | tig0021492:-80386 | Msa1392300:three_prime_UTR |
| CATTATGATGGCTTTGTGGA+TGG | 0.458349 | tig0021492:-83684 | Msa1392300:CDS |
| AGAAGAAGAATGATTGGAAA+GGG | 0.461998 | tig0021492:+84974 | None:intergenic |
| TACTCCTACCTTTCTTCGCT+CGG | 0.462317 | tig0021492:-85049 | Msa1392300:CDS |
| TGATCCATATGAACAACAAC+AGG | 0.469510 | tig0021492:-80712 | Msa1392300:CDS |
| CTTAATCCATGCCTGGGGAC+TGG | 0.471837 | tig0021492:-81381 | Msa1392300:CDS |
| TCTGAGTACATAGTTCATCT+TGG | 0.472659 | tig0021492:-81215 | Msa1392300:CDS |
| TCTTGGCCTGCCCACTCTCG+GGG | 0.475856 | tig0021492:-81198 | Msa1392300:CDS |
| TATCTATTGTTAAAGAAGAA+GGG | 0.479300 | tig0021492:-82572 | Msa1392300:CDS |
| ATTTATAGCAGACACATGTA+TGG | 0.483134 | tig0021492:+83632 | None:intergenic |
| TCACAGCCTGCACTGGATCC+TGG | 0.484940 | tig0021492:-82540 | Msa1392300:CDS |
| AGAATGACTTAATCCATGCC+TGG | 0.487002 | tig0021492:-81388 | Msa1392300:CDS |
| AAAATAAGCGCCGCAAATCA+AGG | 0.491462 | tig0021492:+84562 | None:intergenic |
| GCACCGCTCCTCCTTGCTTA+GGG | 0.492013 | tig0021492:-81957 | Msa1392300:intron |
| TGTTGACCATGAAATGAACT+TGG | 0.495379 | tig0021492:+80638 | None:intergenic |
| AGAGATATCACAGCCTGCAC+TGG | 0.500200 | tig0021492:-82547 | Msa1392300:CDS |
| GTCTGTCCAGTCCCCAGGCA+TGG | 0.503621 | tig0021492:+81375 | None:intergenic |
| CAGACCGACCGAGCGAAGAA+AGG | 0.514238 | tig0021492:+85041 | None:intergenic |
| CTATTTACACTGACCTTCAG+AGG | 0.515012 | tig0021492:+80387 | None:intergenic |
| AAGAAGAAGAATGATTGGAA+AGG | 0.520676 | tig0021492:+84973 | None:intergenic |
| TGATGTATTTCTGATTTACC+AGG | 0.521088 | tig0021492:+82522 | None:intergenic |
| TTATATATTTCTCTGGGATG+AGG | 0.522681 | tig0021492:-83452 | Msa1392300:CDS |
| ATGGATGGAAGAATTTAGCT+TGG | 0.524891 | tig0021492:-83665 | Msa1392300:CDS |
| GCAGTCGTATATTGAAATGC+AGG | 0.528288 | tig0021492:-80784 | Msa1392300:CDS |
| TGGGGACTGGACAGACAACT+TGG | 0.530926 | tig0021492:-81368 | Msa1392300:CDS |
| TCTATCACTATCATCTCTAT+GGG | 0.531315 | tig0021492:+80905 | None:intergenic |
| AAGTTGTCTGTCCAGTCCCC+AGG | 0.535291 | tig0021492:+81370 | None:intergenic |
| GAATGACTTAATCCATGCCT+GGG | 0.537430 | tig0021492:-81387 | Msa1392300:CDS |
| ATGTGTATGGCATATGATCC+AGG | 0.543942 | tig0021492:-81785 | Msa1392300:intron |
| GATTTACCAGGATCCAGTGC+AGG | 0.550120 | tig0021492:+82534 | None:intergenic |
| CTACAATTATATATTTCTCT+GGG | 0.550211 | tig0021492:-83458 | Msa1392300:CDS |
| TGGCAATGCATTCTCTGCAA+AGG | 0.554079 | tig0021492:-84537 | Msa1392300:CDS |
| GGTCAAAATTATCGACAAGA+AGG | 0.554786 | tig0021492:+83428 | None:intergenic |
| CCGACCGAGCGAAGAAAGGT+AGG | 0.562740 | tig0021492:+85045 | None:intergenic |
| ACAACTTGGTTATTGTGCAC+AGG | 0.563090 | tig0021492:-81354 | Msa1392300:intron |
| TGATATGGTGTGTGCGACTT+CGG | 0.566073 | tig0021492:+80604 | None:intergenic |
| GGTATAGATGTGTTAATAGG+AGG | 0.566147 | tig0021492:-80447 | Msa1392300:three_prime_UTR |
| CCACTGACAGTTCATAAAGC+AGG | 0.566749 | tig0021492:-82498 | Msa1392300:CDS |
| TTACAGATGGGTGGAAATGA+TGG | 0.567117 | tig0021492:-81836 | Msa1392300:intron |
| CCTACCTTTCTTCGCTCGGT+CGG | 0.567657 | tig0021492:-85045 | Msa1392300:CDS |
| ATGATGGCTTTGTGGATGGA+TGG | 0.570009 | tig0021492:-83680 | Msa1392300:CDS |
| GAATGACTGAAATCACAAAA+GGG | 0.572973 | tig0021492:+80500 | None:intergenic |
| ATAAGTTTAAAGGTAGTGGA+AGG | 0.575466 | tig0021492:-81993 | Msa1392300:CDS |
| CATATGGATCAATCCAACAT+TGG | 0.600150 | tig0021492:+80724 | None:intergenic |
| TATTTACACTGACCTTCAGA+GGG | 0.603413 | tig0021492:+80388 | None:intergenic |
| GAAGAATGAGGAGTGTCCAA+AGG | 0.608039 | tig0021492:+84588 | None:intergenic |
| AATATTGGTGTACATAAAGG+TGG | 0.609781 | tig0021492:-80468 | Msa1392300:three_prime_UTR |
| GTCAGTGTAAATAGGTCACA+TGG | 0.622001 | tig0021492:-80378 | Msa1392300:three_prime_UTR |
| GCAACTGTTTACCCTAAGCA+AGG | 0.637068 | tig0021492:+81946 | None:intergenic |
| CCTGCTTTATGAACTGTCAG+TGG | 0.637785 | tig0021492:+82498 | None:intergenic |
| AAATCAAGGAAAGAAGAATG+AGG | 0.639950 | tig0021492:+84576 | None:intergenic |
| CTTGGCCTGCCCACTCTCGG+GGG | 0.641965 | tig0021492:-81197 | Msa1392300:CDS |
| TAACTTGTATTACAGATGGG+TGG | 0.651700 | tig0021492:-81845 | Msa1392300:intron |
| AAGCAGGATCAAAAGTACAC+AGG | 0.658718 | tig0021492:-82482 | Msa1392300:intron |
| TTACCCTAAGCAAGGAGGAG+CGG | 0.668467 | tig0021492:+81954 | None:intergenic |
| TGAGTGAAGAAGACAAGACA+AGG | 0.671986 | tig0021492:+84931 | None:intergenic |
| AATGACTTAATCCATGCCTG+GGG | 0.719521 | tig0021492:-81386 | Msa1392300:CDS |
| ACTGTTTACCCTAAGCAAGG+AGG | 0.728598 | tig0021492:+81949 | None:intergenic |
| ATTTACACTGACCTTCAGAG+GGG | 0.761829 | tig0021492:+80389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAACATTTGATAATATTT+CGG | + | tig0021492:85036-85055 | None:intergenic | 10.0% |
| !! | ATATTATCAAATGTTATTAT+TGG | - | tig0021492:85038-85057 | Msa1392300:CDS | 10.0% |
| !! | TATTATCAAATGTTATTATT+GGG | - | tig0021492:85039-85058 | Msa1392300:CDS | 10.0% |
| !! | TGTTTAATATTTACAGATAT+AGG | + | tig0021492:81842-81861 | None:intergenic | 15.0% |
| !!! | TAATTTATCTTAATTTTCAC+TGG | + | tig0021492:83665-83684 | None:intergenic | 15.0% |
| !!! | AGAATTTTTTTGACATTTTT+TGG | - | tig0021492:83749-83768 | Msa1392300:intron | 15.0% |
| !!! | ATCACTTTTTTAGTTAAATT+TGG | - | tig0021492:84353-84372 | Msa1392300:intron | 15.0% |
| !!! | TAGATTCTTTGTTTATTAAA+GGG | + | tig0021492:84562-84581 | None:intergenic | 15.0% |
| !! | GTAGAACTAGAATATAATTA+AGG | + | tig0021492:80611-80630 | None:intergenic | 20.0% |
| !! | GGAAGTAATTAGAAATAAAA+TGG | + | tig0021492:81074-81093 | None:intergenic | 20.0% |
| !! | AAATTTGAGCTTAACATTAA+CGG | + | tig0021492:81284-81303 | None:intergenic | 20.0% |
| !!! | AGCTTTTTGTCTATAAATTA+GGG | - | tig0021492:81419-81438 | Msa1392300:intron | 20.0% |
| !! | ACTACAATTATATATTTCTC+TGG | - | tig0021492:81929-81948 | Msa1392300:intron | 20.0% |
| !! | CTACAATTATATATTTCTCT+GGG | - | tig0021492:81930-81949 | Msa1392300:intron | 20.0% |
| !! | AAATTCAATTTATCCATCAA+TGG | + | tig0021492:82154-82173 | None:intergenic | 20.0% |
| !! | TATTAAGTAAATTAGTCACT+AGG | - | tig0021492:82510-82529 | Msa1392300:CDS | 20.0% |
| !!! | TATTGTCTTTTCTATTTTTC+TGG | - | tig0021492:82684-82703 | Msa1392300:intron | 20.0% |
| !! | AAATCAACAAATCAAAACAT+GGG | + | tig0021492:82782-82801 | None:intergenic | 20.0% |
| !! | AAAATCAACAAATCAAAACA+TGG | + | tig0021492:82783-82802 | None:intergenic | 20.0% |
| !! | TTATCTATTGTTAAAGAAGA+AGG | - | tig0021492:82815-82834 | Msa1392300:intron | 20.0% |
| !! | TATCTATTGTTAAAGAAGAA+GGG | - | tig0021492:82816-82835 | Msa1392300:intron | 20.0% |
| !! | TCGAGAGATAAATTATTTAA+GGG | + | tig0021492:83255-83274 | None:intergenic | 20.0% |
| !!! | AGAAGGTATTATAAGTTTAA+AGG | - | tig0021492:83385-83404 | Msa1392300:intron | 20.0% |
| !! | TATTATAAGTTTAAAGGTAG+TGG | - | tig0021492:83391-83410 | Msa1392300:intron | 20.0% |
| !! | TAACATCACAAATGATATAA+CGG | + | tig0021492:83496-83515 | None:intergenic | 20.0% |
| !!! | ATTTTTTGGTTATTCAAGTA+AGG | - | tig0021492:83763-83782 | Msa1392300:intron | 20.0% |
| !! | ACAATTAACATTATGTACAT+TGG | - | tig0021492:83792-83811 | Msa1392300:intron | 20.0% |
| !! | TTATATTTAGTAACAGACAA+TGG | + | tig0021492:83824-83843 | None:intergenic | 20.0% |
| !!! | ACTAAATATAAAGCTCATTT+TGG | - | tig0021492:83833-83852 | Msa1392300:intron | 20.0% |
| !!! | CTAAATATAAAGCTCATTTT+GGG | - | tig0021492:83834-83853 | Msa1392300:intron | 20.0% |
| !!! | TAAATATAAAGCTCATTTTG+GGG | - | tig0021492:83835-83854 | Msa1392300:intron | 20.0% |
| !!! | ATCTTTTTGTAATTTGAGAT+GGG | + | tig0021492:83884-83903 | None:intergenic | 20.0% |
| !!! | AAATTTACTTGTGTTTTAAG+TGG | - | tig0021492:84405-84424 | Msa1392300:intron | 20.0% |
| !!! | TTAACAAAGCTTTTGTATAT+TGG | - | tig0021492:84440-84459 | Msa1392300:intron | 20.0% |
| !!! | GTAGATTCTTTGTTTATTAA+AGG | + | tig0021492:84563-84582 | None:intergenic | 20.0% |
| !! | TCATTCATCAAAATATGATA+TGG | + | tig0021492:84802-84821 | None:intergenic | 20.0% |
| !! | TTATGTACACCAATATTTAA+GGG | + | tig0021492:84917-84936 | None:intergenic | 20.0% |
| !! | TTTATGTACACCAATATTTA+AGG | + | tig0021492:84918-84937 | None:intergenic | 20.0% |
| !! | TTAAATATTGGTGTACATAA+AGG | - | tig0021492:84917-84936 | Msa1392300:CDS | 20.0% |
| ! | AAGGGAAAAGAATAAGAATA+AGG | + | tig0021492:80399-80418 | None:intergenic | 25.0% |
| !!! | ATGCAAGGTTTGTTATATTT+GGG | - | tig0021492:81035-81054 | Msa1392300:intron | 25.0% |
| !! | CAGCTTTTTGTCTATAAATT+AGG | - | tig0021492:81418-81437 | Msa1392300:intron | 25.0% |
| ! | ATGTCATCAATTGAAAAAAG+AGG | + | tig0021492:81473-81492 | None:intergenic | 25.0% |
| ! | AAATAGCCAACAAATTCAAT+GGG | + | tig0021492:81523-81542 | None:intergenic | 25.0% |
| !! | TGTTGATAAAATCGTCAAAA+AGG | - | tig0021492:81568-81587 | Msa1392300:intron | 25.0% |
| ! | ACATATAACATGAACTAATG+CGG | - | tig0021492:82089-82108 | Msa1392300:intron | 25.0% |
| ! | TTATAGTTATGTTATGTGCA+AGG | + | tig0021492:82213-82232 | None:intergenic | 25.0% |
| ! | TAACATAACTATAAACCCTA+TGG | - | tig0021492:82219-82238 | Msa1392300:intron | 25.0% |
| ! | AACATAACTATAAACCCTAT+GGG | - | tig0021492:82220-82239 | Msa1392300:intron | 25.0% |
| !! | AATTCTTTGTTTCAGATTGT+TGG | - | tig0021492:82375-82394 | Msa1392300:intron | 25.0% |
| ! | CATACACTACAAATATATAG+AGG | + | tig0021492:82609-82628 | None:intergenic | 25.0% |
| ! | AATCAACAAATCAAAACATG+GGG | + | tig0021492:82781-82800 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTGTTGATTTTC+TGG | - | tig0021492:82784-82803 | Msa1392300:intron | 25.0% |
| ! | ATATAACTTGAAAACTGACA+AGG | + | tig0021492:83052-83071 | None:intergenic | 25.0% |
| ! | AATATATGTACACAGTCTAA+CGG | - | tig0021492:83077-83096 | Msa1392300:intron | 25.0% |
| ! | GTCGAGAGATAAATTATTTA+AGG | + | tig0021492:83256-83275 | None:intergenic | 25.0% |
| ! | AGTTAAAAAGAAAATCACAC+AGG | + | tig0021492:83473-83492 | None:intergenic | 25.0% |
| !! | TAAGTAACTTGTATTACAGA+TGG | - | tig0021492:83539-83558 | Msa1392300:intron | 25.0% |
| !! | AAGTAACTTGTATTACAGAT+GGG | - | tig0021492:83540-83559 | Msa1392300:intron | 25.0% |
| !!! | CAAGATTTTTTAGAAAACAC+TGG | + | tig0021492:83580-83599 | None:intergenic | 25.0% |
| !!! | CAGTGTTTTCTAAAAAATCT+TGG | - | tig0021492:83578-83597 | Msa1392300:intron | 25.0% |
| !! | GATCTTTTTGTAATTTGAGA+TGG | + | tig0021492:83885-83904 | None:intergenic | 25.0% |
| ! | ATCATAAGCATACTTACTTT+AGG | + | tig0021492:84509-84528 | None:intergenic | 25.0% |
| ! | TAAACAAAGAATCTACTACA+TGG | - | tig0021492:84567-84586 | Msa1392300:CDS | 25.0% |
| !! | TATATTGAAATGCAGGTTTT+TGG | - | tig0021492:84611-84630 | Msa1392300:CDS | 25.0% |
| !! | ATATTGAAATGCAGGTTTTT+GGG | - | tig0021492:84612-84631 | Msa1392300:CDS | 25.0% |
| !! | TGATGTTTCAATGATTTTAC+AGG | - | tig0021492:84852-84871 | Msa1392300:intron | 25.0% |
| ! | TCATTCATTCCCTTAAATAT+TGG | - | tig0021492:84905-84924 | Msa1392300:CDS | 25.0% |
| AGAAGAAGAATGATTGGAAA+GGG | + | tig0021492:80417-80436 | None:intergenic | 30.0% | |
| AAGAAGAAGAATGATTGGAA+AGG | + | tig0021492:80418-80437 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAATGAT+TGG | + | tig0021492:80423-80442 | None:intergenic | 30.0% | |
| AACCAAATAATGATGATCTG+AGG | + | tig0021492:80544-80563 | None:intergenic | 30.0% | |
| !!! | AACAACCTATTTTTTGGATC+CGG | + | tig0021492:80780-80799 | None:intergenic | 30.0% |
| !!! | CAAAGGAACAACCTATTTTT+TGG | + | tig0021492:80786-80805 | None:intergenic | 30.0% |
| CAAAAAATAGGTTGTTCCTT+TGG | - | tig0021492:80784-80803 | Msa1392300:CDS | 30.0% | |
| AAATCAAGGAAAGAAGAATG+AGG | + | tig0021492:80815-80834 | None:intergenic | 30.0% | |
| ! | ATTCTTCTTTCCTTGATTTG+CGG | - | tig0021492:80816-80835 | Msa1392300:intron | 30.0% |
| TAATTGGATGTTGTTGTATC+CGG | + | tig0021492:81009-81028 | None:intergenic | 30.0% | |
| ATCCAATTATAATGCATGCA+AGG | - | tig0021492:81020-81039 | Msa1392300:intron | 30.0% | |
| AACCTTGCATGCATTATAAT+TGG | + | tig0021492:81025-81044 | None:intergenic | 30.0% | |
| !! | CATGCAAGGTTTGTTATATT+TGG | - | tig0021492:81034-81053 | Msa1392300:intron | 30.0% |
| !! | TGCAAGGTTTGTTATATTTG+GGG | - | tig0021492:81036-81055 | Msa1392300:intron | 30.0% |
| ! | GTTTCTAGGGAAATAAAAAG+AGG | + | tig0021492:81120-81139 | None:intergenic | 30.0% |
| ! | ATCAAGTATTTGTTTCTCCT+TGG | - | tig0021492:81318-81337 | Msa1392300:intron | 30.0% |
| GAAATAGCCAACAAATTCAA+TGG | + | tig0021492:81524-81543 | None:intergenic | 30.0% | |
| !! | AATTTGTTGGCTATTTCAGT+AGG | - | tig0021492:81527-81546 | Msa1392300:intron | 30.0% |
| !!! | GTGATGCTTTTTCATTATGA+TGG | - | tig0021492:81692-81711 | Msa1392300:intron | 30.0% |
| !! | TTTTCATTATGATGGCTTTG+TGG | - | tig0021492:81700-81719 | Msa1392300:intron | 30.0% |
| ATTTATAGCAGACACATGTA+TGG | + | tig0021492:81759-81778 | None:intergenic | 30.0% | |
| CTGCTATAAATCAAACGAAA+TGG | - | tig0021492:81768-81787 | Msa1392300:intron | 30.0% | |
| AATTCTCTCTATCATGACAT+AGG | - | tig0021492:81866-81885 | Msa1392300:intron | 30.0% | |
| !! | TTATATATTTCTCTGGGATG+AGG | - | tig0021492:81936-81955 | Msa1392300:intron | 30.0% |
| AATTTATCCATCAATGGTGT+TGG | + | tig0021492:82148-82167 | None:intergenic | 30.0% | |
| !!! | TTTTCGAGTTGGTAACATTT+TGG | - | tig0021492:82249-82268 | Msa1392300:intron | 30.0% |
| GCAAGTGAAAATTACAATGT+CGG | + | tig0021492:82275-82294 | None:intergenic | 30.0% | |
| ! | TAATTTTCACTTGCAAAACC+AGG | - | tig0021492:82281-82300 | Msa1392300:intron | 30.0% |
| TTTGTTTCAGATTGTTGGAA+TGG | - | tig0021492:82380-82399 | Msa1392300:intron | 30.0% | |
| TCATCATCTGTGTAGAAAAA+AGG | + | tig0021492:82748-82767 | None:intergenic | 30.0% | |
| !!! | GATTTGTTGATTTTCTGGTT+AGG | - | tig0021492:82789-82808 | Msa1392300:intron | 30.0% |
| ! | TGATGTATTTCTGATTTACC+AGG | + | tig0021492:82869-82888 | None:intergenic | 30.0% |
| !! | TCATTAATAGAGTACTGCAT+TGG | + | tig0021492:83010-83029 | None:intergenic | 30.0% |
| !! | ATAAGTTTAAAGGTAGTGGA+AGG | - | tig0021492:83395-83414 | Msa1392300:intron | 30.0% |
| AAAAATCTTGGCAATGTGTA+TGG | - | tig0021492:83590-83609 | Msa1392300:intron | 30.0% | |
| TTTGAGAACGTTATATGACA+TGG | - | tig0021492:83691-83710 | Msa1392300:CDS | 30.0% | |
| TCATATATTTCGATTCTGCA+TGG | - | tig0021492:83938-83957 | Msa1392300:intron | 30.0% | |
| ATATCTAAATCCTTCCAGTA+TGG | - | tig0021492:84091-84110 | Msa1392300:intron | 30.0% | |
| TTGAAGATTTATCATCCTAG+TGG | - | tig0021492:84325-84344 | Msa1392300:intron | 30.0% | |
| AAAAAGTGATTACTACCACT+AGG | + | tig0021492:84343-84362 | None:intergenic | 30.0% | |
| !!! | CTTTTGTATATTGGTTTGCA+GGG | - | tig0021492:84449-84468 | Msa1392300:intron | 30.0% |
| !!! | TTTTGTATATTGGTTTGCAG+GGG | - | tig0021492:84450-84469 | Msa1392300:intron | 30.0% |
| TCTATCACTATCATCTCTAT+GGG | + | tig0021492:84486-84505 | None:intergenic | 30.0% | |
| CAAAATCCAAGTTCATTTCA+TGG | - | tig0021492:84744-84763 | Msa1392300:intron | 30.0% | |
| GAATGACTGAAATCACAAAA+GGG | + | tig0021492:84891-84910 | None:intergenic | 30.0% | |
| TGAATGACTGAAATCACAAA+AGG | + | tig0021492:84892-84911 | None:intergenic | 30.0% | |
| AATATTGGTGTACATAAAGG+TGG | - | tig0021492:84920-84939 | Msa1392300:CDS | 30.0% | |
| ! | GAAGAAAGGTAGGAGTATAT+TGG | + | tig0021492:80336-80355 | None:intergenic | 35.0% |
| CTCCTCAGATCATCATTATT+TGG | - | tig0021492:80539-80558 | Msa1392300:three_prime_UTR | 35.0% | |
| AGACAAGACATGCAATAGAA+TGG | + | tig0021492:80584-80603 | None:intergenic | 35.0% | |
| ATGTCATGTAATGTCATGTC+AGG | - | tig0021492:80743-80762 | Msa1392300:CDS | 35.0% | |
| TGTCATGTAATGTCATGTCA+GGG | - | tig0021492:80744-80763 | Msa1392300:CDS | 35.0% | |
| TCTTTCCGGATCCAAAAAAT+AGG | - | tig0021492:80772-80791 | Msa1392300:CDS | 35.0% | |
| !! | GTTTTCTTTTTTGCAGAGAC+TGG | - | tig0021492:80957-80976 | Msa1392300:intron | 35.0% |
| GGGACTAATTTATTCAATGC+CGG | - | tig0021492:80987-81006 | Msa1392300:intron | 35.0% | |
| !! | GCAAGGTTTGTTATATTTGG+GGG | - | tig0021492:81037-81056 | Msa1392300:intron | 35.0% |
| GAGAATTAGCTAGAGGTAAT+GGG | + | tig0021492:81095-81114 | None:intergenic | 35.0% | |
| AGAGAATTAGCTAGAGGTAA+TGG | + | tig0021492:81096-81115 | None:intergenic | 35.0% | |
| ATTAGAGCATGAAGTGAAGT+TGG | + | tig0021492:81260-81279 | None:intergenic | 35.0% | |
| TGGTTCAAGATTAAACTCCA+AGG | + | tig0021492:81338-81357 | None:intergenic | 35.0% | |
| GAATCTGCATATCAGATTAC+TGG | + | tig0021492:81358-81377 | None:intergenic | 35.0% | |
| ! | TTCAATTGATGACATCTACC+TGG | - | tig0021492:81478-81497 | Msa1392300:intron | 35.0% |
| ATCACAACAAAATCACCTGA+CGG | + | tig0021492:81677-81696 | None:intergenic | 35.0% | |
| ATGGATGGAAGAATTTAGCT+TGG | - | tig0021492:81723-81742 | Msa1392300:intron | 35.0% | |
| !!! | GTTAATTTGTTTTCCCTCTG+TGG | - | tig0021492:81807-81826 | Msa1392300:CDS | 35.0% |
| GGTCAAAATTATCGACAAGA+AGG | + | tig0021492:81963-81982 | None:intergenic | 35.0% | |
| !! | TCGATAATTTTGACCCGAAA+AGG | - | tig0021492:81968-81987 | Msa1392300:CDS | 35.0% |
| !! | AATTTTGACCCGAAAAGGTA+AGG | - | tig0021492:81973-81992 | Msa1392300:CDS | 35.0% |
| ! | GTAACAATTGAGTGTTGCAA+AGG | + | tig0021492:82048-82067 | None:intergenic | 35.0% |
| ! | TGAACTAATGCGGATCTTTT+TGG | - | tig0021492:82099-82118 | Msa1392300:intron | 35.0% |
| GAATTTCTTTGTTAAGCTCG+CGG | - | tig0021492:82168-82187 | Msa1392300:intron | 35.0% | |
| AATTTCTTTGTTAAGCTCGC+GGG | - | tig0021492:82169-82188 | Msa1392300:intron | 35.0% | |
| CAGTCTTACAAGCAAACTTA+TGG | - | tig0021492:82579-82598 | Msa1392300:CDS | 35.0% | |
| AAAGGACCTAAAGGTGAAAA+TGG | + | tig0021492:82730-82749 | None:intergenic | 35.0% | |
| GTGTAGAAAAAAGGACCTAA+AGG | + | tig0021492:82739-82758 | None:intergenic | 35.0% | |
| GTTTAGCAACAACACTCATT+CGG | - | tig0021492:82957-82976 | Msa1392300:intron | 35.0% | |
| !! | AATAGAGTACTGCATTGGTT+GGG | + | tig0021492:83005-83024 | None:intergenic | 35.0% |
| !! | TAATAGAGTACTGCATTGGT+TGG | + | tig0021492:83006-83025 | None:intergenic | 35.0% |
| ATAATTTATCTCTCGACTCC+TGG | - | tig0021492:83259-83278 | Msa1392300:intron | 35.0% | |
| TAATTTATCTCTCGACTCCT+GGG | - | tig0021492:83260-83279 | Msa1392300:intron | 35.0% | |
| ATGAATGAGTATACATTCCC+AGG | + | tig0021492:83280-83299 | None:intergenic | 35.0% | |
| ! | TAACTTGTATTACAGATGGG+TGG | - | tig0021492:83543-83562 | Msa1392300:intron | 35.0% |
| !! | TTGCTTTTCTTATCCATACC+TGG | + | tig0021492:83624-83643 | None:intergenic | 35.0% |
| TTGAGATGGGACTATATGTA+GGG | + | tig0021492:83871-83890 | None:intergenic | 35.0% | |
| ! | TTTGAGATGGGACTATATGT+AGG | + | tig0021492:83872-83891 | None:intergenic | 35.0% |
| ATTTAGATATGCCACGAACA+TGG | + | tig0021492:84081-84100 | None:intergenic | 35.0% | |
| TCATCTCTCAGCAATATTTC+AGG | - | tig0021492:84118-84137 | Msa1392300:intron | 35.0% | |
| CATCTCTCAGCAATATTTCA+GGG | - | tig0021492:84119-84138 | Msa1392300:intron | 35.0% | |
| GGTGATCGAATGAAAAATGT+AGG | - | tig0021492:84140-84159 | Msa1392300:intron | 35.0% | |
| TCGAATGAAAAATGTAGGTG+TGG | - | tig0021492:84145-84164 | Msa1392300:intron | 35.0% | |
| AATGAAAAATGTAGGTGTGG+TGG | - | tig0021492:84148-84167 | Msa1392300:intron | 35.0% | |
| TCTGAGTACATAGTTCATCT+TGG | - | tig0021492:84173-84192 | Msa1392300:intron | 35.0% | |
| ATATACCTTGTCTCTAAACG+CGG | - | tig0021492:84264-84283 | Msa1392300:intron | 35.0% | |
| TCTAAACGCGGTACATAAAA+TGG | - | tig0021492:84276-84295 | Msa1392300:intron | 35.0% | |
| !!! | GCTTTTGTATATTGGTTTGC+AGG | - | tig0021492:84448-84467 | Msa1392300:intron | 35.0% |
| GTCTATCACTATCATCTCTA+TGG | + | tig0021492:84487-84506 | None:intergenic | 35.0% | |
| ATGGAAAGATGCAGCAAAAA+AGG | - | tig0021492:84640-84659 | Msa1392300:intron | 35.0% | |
| CATATGGATCAATCCAACAT+TGG | + | tig0021492:84667-84686 | None:intergenic | 35.0% | |
| TGATCCATATGAACAACAAC+AGG | - | tig0021492:84676-84695 | Msa1392300:intron | 35.0% | |
| ! | TTTGCCTGTTGTTGTTCATA+TGG | + | tig0021492:84683-84702 | None:intergenic | 35.0% |
| !! | AGTCATTAGTCTGTTTTGTG+AGG | - | tig0021492:84710-84729 | Msa1392300:intron | 35.0% |
| TGTTGACCATGAAATGAACT+TGG | + | tig0021492:84753-84772 | None:intergenic | 35.0% | |
| GGTGGTATAGATGTGTTAAT+AGG | - | tig0021492:84938-84957 | Msa1392300:CDS | 35.0% | |
| GGTATAGATGTGTTAATAGG+AGG | - | tig0021492:84941-84960 | Msa1392300:CDS | 35.0% | |
| TATTTACACTGACCTTCAGA+GGG | + | tig0021492:85003-85022 | None:intergenic | 35.0% | |
| TGAGTGAAGAAGACAAGACA+AGG | + | tig0021492:80460-80479 | None:intergenic | 40.0% | |
| TTGTCTTCTTCACTCAGTTC+AGG | - | tig0021492:80464-80483 | Msa1392300:three_prime_UTR | 40.0% | |
| ATCTGAGGAGAACGAACTTA+CGG | + | tig0021492:80529-80548 | None:intergenic | 40.0% | |
| AGACATGCAATAGAATGGTC+TGG | + | tig0021492:80579-80598 | None:intergenic | 40.0% | |
| ! | AAAATAAGCGCCGCAAATCA+AGG | + | tig0021492:80829-80848 | None:intergenic | 40.0% |
| !! | ATTTGCGGCGCTTATTTTCT+TGG | - | tig0021492:80831-80850 | Msa1392300:intron | 40.0% |
| !! | GGTTTGTTATATTTGGGGGT+AGG | - | tig0021492:81041-81060 | Msa1392300:intron | 40.0% |
| TTGTTATATTTGGGGGTAGG+AGG | - | tig0021492:81044-81063 | Msa1392300:intron | 40.0% | |
| AGAGGAAGAGAATTAGCTAG+AGG | + | tig0021492:81102-81121 | None:intergenic | 40.0% | |
| GAACCACCCATTGAATTTGT+TGG | - | tig0021492:81514-81533 | Msa1392300:intron | 40.0% | |
| TAGCCAACAAATTCAATGGG+TGG | + | tig0021492:81520-81539 | None:intergenic | 40.0% | |
| TCACAACAAAATCACCTGAC+GGG | + | tig0021492:81676-81695 | None:intergenic | 40.0% | |
| !! | CATTATGATGGCTTTGTGGA+TGG | - | tig0021492:81704-81723 | Msa1392300:intron | 40.0% |
| TCTCTCTATCATGACATAGG+TGG | - | tig0021492:81869-81888 | Msa1392300:intron | 40.0% | |
| TTGTAGTCAGCAACTATGTC+TGG | + | tig0021492:81916-81935 | None:intergenic | 40.0% | |
| !! | ATGGTGTTGGTGAAGAAACA+TGG | + | tig0021492:82135-82154 | None:intergenic | 40.0% |
| TTCTTCACCAACACCATTGA+TGG | - | tig0021492:82138-82157 | Msa1392300:intron | 40.0% | |
| CTCGAAAAAGACATCCCATA+GGG | + | tig0021492:82237-82256 | None:intergenic | 40.0% | |
| ACTCGAAAAAGACATCCCAT+AGG | + | tig0021492:82238-82257 | None:intergenic | 40.0% | |
| !!! | ATGGGATGTCTTTTTCGAGT+TGG | - | tig0021492:82238-82257 | Msa1392300:intron | 40.0% |
| ! | TCTCCACCATTTTCACCTTT+AGG | - | tig0021492:82721-82740 | Msa1392300:intron | 40.0% |
| ! | AAGCAGGATCAAAAGTACAC+AGG | - | tig0021492:82906-82925 | Msa1392300:intron | 40.0% |
| TGTTGTTGCTAAACAGCTAG+AGG | + | tig0021492:82951-82970 | None:intergenic | 40.0% | |
| TTATGCTGTCTCTGTACAGA+AGG | - | tig0021492:83368-83387 | Msa1392300:intron | 40.0% | |
| TTACAGATGGGTGGAAATGA+TGG | - | tig0021492:83552-83571 | Msa1392300:intron | 40.0% | |
| ATGTGTATGGCATATGATCC+AGG | - | tig0021492:83603-83622 | Msa1392300:intron | 40.0% | |
| TATGGCATATGATCCAGGTA+TGG | - | tig0021492:83608-83627 | Msa1392300:intron | 40.0% | |
| AGAATGACTTAATCCATGCC+TGG | - | tig0021492:84000-84019 | Msa1392300:intron | 40.0% | |
| GAATGACTTAATCCATGCCT+GGG | - | tig0021492:84001-84020 | Msa1392300:intron | 40.0% | |
| AATGACTTAATCCATGCCTG+GGG | - | tig0021492:84002-84021 | Msa1392300:intron | 40.0% | |
| ACAACTTGGTTATTGTGCAC+AGG | - | tig0021492:84034-84053 | Msa1392300:intron | 40.0% | |
| GTGTTATAACACCATGTTCG+TGG | - | tig0021492:84067-84086 | Msa1392300:intron | 40.0% | |
| AGATGAACAACCATACTGGA+AGG | + | tig0021492:84104-84123 | None:intergenic | 40.0% | |
| TGAGAGATGAACAACCATAC+TGG | + | tig0021492:84108-84127 | None:intergenic | 40.0% | |
| AGAATCTACTACATGGTTGC+AGG | - | tig0021492:84574-84593 | Msa1392300:CDS | 40.0% | |
| GCAGTCGTATATTGAAATGC+AGG | - | tig0021492:84604-84623 | Msa1392300:CDS | 40.0% | |
| !! | TGCAGGTTTTTGGGAAAAGA+TGG | - | tig0021492:84621-84640 | Msa1392300:CDS | 40.0% |
| CAGCAAAAAAGGACCAATGT+TGG | - | tig0021492:84651-84670 | Msa1392300:intron | 40.0% | |
| ATTTACACTGACCTTCAGAG+GGG | + | tig0021492:85002-85021 | None:intergenic | 40.0% | |
| CTATTTACACTGACCTTCAG+AGG | + | tig0021492:85004-85023 | None:intergenic | 40.0% | |
| ! | CTCTGAAGGTCAGTGTAAAT+AGG | - | tig0021492:85002-85021 | Msa1392300:CDS | 40.0% |
| GTCAGTGTAAATAGGTCACA+TGG | - | tig0021492:85010-85029 | Msa1392300:CDS | 40.0% | |
| TACTCCTACCTTTCTTCGCT+CGG | - | tig0021492:80339-80358 | Msa1392300:three_prime_UTR | 45.0% | |
| !! | ATGTCAGGGTGTTGTCTTTC+CGG | - | tig0021492:80758-80777 | Msa1392300:CDS | 45.0% |
| !! | GAAGAATGAGGAGTGTCCAA+AGG | + | tig0021492:80803-80822 | None:intergenic | 45.0% |
| TGGCAATGCATTCTCTGCAA+AGG | - | tig0021492:80851-80870 | Msa1392300:intron | 45.0% | |
| TGCCTCAAGGAATTGTTGCT+AGG | - | tig0021492:81167-81186 | Msa1392300:CDS | 45.0% | |
| GTCCTAGCAACAATTCCTTG+AGG | + | tig0021492:81172-81191 | None:intergenic | 45.0% | |
| TGTTGCTAGGACCTCTAACT+TGG | - | tig0021492:81180-81199 | Msa1392300:CDS | 45.0% | |
| GGACCTCTAACTTGGAAACA+CGG | - | tig0021492:81188-81207 | Msa1392300:CDS | 45.0% | |
| ACACCAGAGTAGTCCCATAA+GGG | + | tig0021492:81214-81233 | None:intergenic | 45.0% | |
| TACACCAGAGTAGTCCCATA+AGG | + | tig0021492:81215-81234 | None:intergenic | 45.0% | |
| GGTTCGAAATTCTCTGAACC+AGG | + | tig0021492:81499-81518 | None:intergenic | 45.0% | |
| !! | ATGATGGCTTTGTGGATGGA+TGG | - | tig0021492:81708-81727 | Msa1392300:intron | 45.0% |
| TAGGAGTAGATGACCACAGA+GGG | + | tig0021492:81823-81842 | None:intergenic | 45.0% | |
| ATAGGAGTAGATGACCACAG+AGG | + | tig0021492:81824-81843 | None:intergenic | 45.0% | |
| ! | CACAAGTGCCTTACCTTTTC+GGG | + | tig0021492:81984-82003 | None:intergenic | 45.0% |
| ! | GCACAAGTGCCTTACCTTTT+CGG | + | tig0021492:81985-82004 | None:intergenic | 45.0% |
| TTCACTTGCAAAACCAGGTG+TGG | - | tig0021492:82286-82305 | Msa1392300:intron | 45.0% | |
| GGACCTAAAGGTGAAAATGG+TGG | + | tig0021492:82727-82746 | None:intergenic | 45.0% | |
| CCTGCTTTATGAACTGTCAG+TGG | + | tig0021492:82893-82912 | None:intergenic | 45.0% | |
| CCACTGACAGTTCATAAAGC+AGG | - | tig0021492:82890-82909 | Msa1392300:intron | 45.0% | |
| GTTGCTAAACAGCTAGAGGT+GGG | + | tig0021492:82947-82966 | None:intergenic | 45.0% | |
| TGTTGCTAAACAGCTAGAGG+TGG | + | tig0021492:82948-82967 | None:intergenic | 45.0% | |
| !! | GCATTGGTTGGGTCATAACA+AGG | + | tig0021492:82994-83013 | None:intergenic | 45.0% |
| ACTGTTTACCCTAAGCAAGG+AGG | + | tig0021492:83442-83461 | None:intergenic | 45.0% | |
| GCAACTGTTTACCCTAAGCA+AGG | + | tig0021492:83445-83464 | None:intergenic | 45.0% | |
| ATGTACCGCGTTTAGAGACA+AGG | + | tig0021492:84272-84291 | None:intergenic | 45.0% | |
| TGATATGGTGTGTGCGACTT+CGG | + | tig0021492:84787-84806 | None:intergenic | 45.0% | |
| !!! | TCAATTAATTAATTTTATTT+TGG | - | tig0021492:80670-80689 | Msa1392300:three_prime_UTR | 5.0% |
| !!! | CAATTAATTAATTTTATTTT+GGG | - | tig0021492:80671-80690 | Msa1392300:three_prime_UTR | 5.0% |
| !!! | AATTAATTAATTTTATTTTG+GGG | - | tig0021492:80672-80691 | Msa1392300:three_prime_UTR | 5.0% |
| !!! | TTTGTAAAAAATATTTTTTT+TGG | + | tig0021492:83907-83926 | None:intergenic | 5.0% |
| ! | TTTTGCAGAGACTGGCACGA+TGG | - | tig0021492:80965-80984 | Msa1392300:intron | 50.0% |
| TTTGCAGAGACTGGCACGAT+GGG | - | tig0021492:80966-80985 | Msa1392300:intron | 50.0% | |
| !! | GAAGGGCGGCATTGTTTCTA+GGG | + | tig0021492:81133-81152 | None:intergenic | 50.0% |
| ! | AGAAGGGCGGCATTGTTTCT+AGG | + | tig0021492:81134-81153 | None:intergenic | 50.0% |
| TAGAAACAATGCCGCCCTTC+TGG | - | tig0021492:81133-81152 | Msa1392300:intron | 50.0% | |
| GCAATGCCTGAGTTCCAGAA+GGG | + | tig0021492:81150-81169 | None:intergenic | 50.0% | |
| ACTTGGAAACACGGCCCTTA+TGG | - | tig0021492:81197-81216 | Msa1392300:CDS | 50.0% | |
| CTTGGAAACACGGCCCTTAT+GGG | - | tig0021492:81198-81217 | Msa1392300:CDS | 50.0% | |
| !! | TATCTGCTGACTCATACCGC+CGG | - | tig0021492:81642-81661 | Msa1392300:intron | 50.0% |
| TTGCAAAACCAGGTGTGGCA+AGG | - | tig0021492:82291-82310 | Msa1392300:intron | 50.0% | |
| AGAGATATCACAGCCTGCAC+TGG | - | tig0021492:82841-82860 | Msa1392300:intron | 50.0% | |
| GATTTACCAGGATCCAGTGC+AGG | + | tig0021492:82857-82876 | None:intergenic | 50.0% | |
| TTACCCTAAGCAAGGAGGAG+CGG | + | tig0021492:83437-83456 | None:intergenic | 50.0% | |
| CGGGGGATCTAATGGAAATG+AGG | - | tig0021492:84208-84227 | Msa1392300:intron | 50.0% | |
| CTACTACATGGTTGCAGGTG+AGG | - | tig0021492:84579-84598 | Msa1392300:CDS | 50.0% | |
| ! | AGTTTTTGTCGCCCCTCTGA+AGG | - | tig0021492:84988-85007 | Msa1392300:CDS | 50.0% |
| CCTACCTTTCTTCGCTCGGT+CGG | - | tig0021492:80343-80362 | Msa1392300:three_prime_UTR | 55.0% | |
| TTGCAGAGACTGGCACGATG+GGG | - | tig0021492:80967-80986 | Msa1392300:intron | 55.0% | |
| ATGCCTGAGTTCCAGAAGGG+CGG | + | tig0021492:81147-81166 | None:intergenic | 55.0% | |
| GGCAATGCCTGAGTTCCAGA+AGG | + | tig0021492:81151-81170 | None:intergenic | 55.0% | |
| ! | GGAACTCAGGCATTGCCTCA+AGG | - | tig0021492:81154-81173 | Msa1392300:intron | 55.0% |
| GGGCCGTGTTTCCAAGTTAG+AGG | + | tig0021492:81194-81213 | None:intergenic | 55.0% | |
| TAAGCTCGCGGGCTTACAGT+TGG | - | tig0021492:82180-82199 | Msa1392300:intron | 55.0% | |
| GCTAGAGGTGGGAGGAAACA+AGG | + | tig0021492:82936-82955 | None:intergenic | 55.0% | |
| GCTAAACAGCTAGAGGTGGG+AGG | + | tig0021492:82944-82963 | None:intergenic | 55.0% | |
| CTTAATCCATGCCTGGGGAC+TGG | - | tig0021492:84007-84026 | Msa1392300:intron | 55.0% | |
| AAGTTGTCTGTCCAGTCCCC+AGG | + | tig0021492:84021-84040 | None:intergenic | 55.0% | |
| TGGGGACTGGACAGACAACT+TGG | - | tig0021492:84020-84039 | Msa1392300:intron | 55.0% | |
| CCATTAGATCCCCCGAGAGT+GGG | + | tig0021492:84203-84222 | None:intergenic | 55.0% | |
| TCCATTAGATCCCCCGAGAG+TGG | + | tig0021492:84204-84223 | None:intergenic | 55.0% | |
| CCGACCGAGCGAAGAAAGGT+AGG | + | tig0021492:80346-80365 | None:intergenic | 60.0% | |
| CAGACCGACCGAGCGAAGAA+AGG | + | tig0021492:80350-80369 | None:intergenic | 60.0% | |
| !! | ATGCCGCCCTTCTGGAACTC+AGG | - | tig0021492:81141-81160 | Msa1392300:intron | 60.0% |
| CGGCCCTTATGGGACTACTC+TGG | - | tig0021492:81208-81227 | Msa1392300:CDS | 60.0% | |
| CCAGGTGTGGCAAGGAGAGT+CGG | - | tig0021492:82299-82318 | Msa1392300:intron | 60.0% | |
| TCACAGCCTGCACTGGATCC+TGG | - | tig0021492:82848-82867 | Msa1392300:intron | 60.0% | |
| AGCACCGCTCCTCCTTGCTT+AGG | - | tig0021492:83430-83449 | Msa1392300:CDS | 60.0% | |
| GCACCGCTCCTCCTTGCTTA+GGG | - | tig0021492:83431-83450 | Msa1392300:CDS | 60.0% | |
| CATCTTGGCCTGCCCACTCT+CGG | - | tig0021492:84188-84207 | Msa1392300:intron | 60.0% | |
| ATCTTGGCCTGCCCACTCTC+GGG | - | tig0021492:84189-84208 | Msa1392300:intron | 60.0% | |
| CCCACTCTCGGGGGATCTAA+TGG | - | tig0021492:84200-84219 | Msa1392300:intron | 60.0% | |
| !! | CTGCTGACTCATACCGCCGG+TGG | - | tig0021492:81645-81664 | Msa1392300:intron | 65.0% |
| CACCTGACGGGAACTGCCAC+CGG | + | tig0021492:81664-81683 | None:intergenic | 65.0% | |
| CCGACTCTCCTTGCCACACC+TGG | + | tig0021492:82302-82321 | None:intergenic | 65.0% | |
| GTCTGTCCAGTCCCCAGGCA+TGG | + | tig0021492:84016-84035 | None:intergenic | 65.0% | |
| TCTTGGCCTGCCCACTCTCG+GGG | - | tig0021492:84190-84209 | Msa1392300:intron | 65.0% | |
| TAGATCCCCCGAGAGTGGGC+AGG | + | tig0021492:84199-84218 | None:intergenic | 65.0% | |
| CTGACGGGAACTGCCACCGG+CGG | + | tig0021492:81661-81680 | None:intergenic | 70.0% | |
| CTTGGCCTGCCCACTCTCGG+GGG | - | tig0021492:84191-84210 | Msa1392300:intron | 70.0% | |
| CGCCGGTGGCAGTTCCCGTC+AGG | - | tig0021492:81659-81678 | Msa1392300:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021492 | gene | 80301 | 85109 | 80301 | ID=Msa1392300;Name=Msa1392300 |
| tig0021492 | mRNA | 80301 | 85109 | 80301 | ID=Msa1392300-mRNA-1;Parent=Msa1392300;Name=Msa1392300-mRNA-1;_AED=0.19;_eAED=0.19;_QI=14|0.8|0.72|1|0.9|0.90|11|391|375 |
| tig0021492 | exon | 80301 | 80814 | 80301 | ID=Msa1392300-mRNA-1:exon:13131;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 80899 | 80940 | 80899 | ID=Msa1392300-mRNA-1:exon:13130;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 81160 | 81270 | 81160 | ID=Msa1392300-mRNA-1:exon:13129;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 81355 | 81408 | 81355 | ID=Msa1392300-mRNA-1:exon:13128;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 81786 | 81852 | 81786 | ID=Msa1392300-mRNA-1:exon:13127;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 81958 | 82023 | 81958 | ID=Msa1392300-mRNA-1:exon:13126;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 82483 | 82599 | 82483 | ID=Msa1392300-mRNA-1:exon:13125;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 83421 | 83522 | 83421 | ID=Msa1392300-mRNA-1:exon:13124;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 83621 | 83729 | 83621 | ID=Msa1392300-mRNA-1:exon:13123;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 84522 | 84645 | 84522 | ID=Msa1392300-mRNA-1:exon:13122;Parent=Msa1392300-mRNA-1 |
| tig0021492 | exon | 84883 | 85109 | 84883 | ID=Msa1392300-mRNA-1:exon:13121;Parent=Msa1392300-mRNA-1 |
| tig0021492 | five_prime_UTR | 85096 | 85109 | 85096 | ID=Msa1392300-mRNA-1:five_prime_utr;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 84883 | 85095 | 84883 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 84522 | 84645 | 84522 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 83621 | 83729 | 83621 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 83421 | 83522 | 83421 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 82483 | 82599 | 82483 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 81958 | 82023 | 81958 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 81786 | 81852 | 81786 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 81355 | 81408 | 81355 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 81160 | 81270 | 81160 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 80899 | 80940 | 80899 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | CDS | 80692 | 80814 | 80692 | ID=Msa1392300-mRNA-1:cds;Parent=Msa1392300-mRNA-1 |
| tig0021492 | three_prime_UTR | 80301 | 80691 | 80301 | ID=Msa1392300-mRNA-1:three_prime_utr;Parent=Msa1392300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
