Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375030 | XP_003592883.2 | 97.328 | 262 | 0 | 1 | 112 | 373 | 139 | 393 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375030 | G7IL64 | 97.328 | 262 | 0 | 1 | 112 | 373 | 139 | 393 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031570 | Msa1375030 | 0.802785 | 4.756593e-49 | -8.615850e-47 |
| Msa1375030 | Msa1392300 | 0.939967 | 5.206331e-100 | -8.615850e-47 |
| Msa1375030 | Msa1440560 | 0.807304 | 5.397012e-50 | -8.615850e-47 |
| Msa0661650 | Msa1375030 | 0.802029 | 6.811310e-49 | -8.615850e-47 |
| Msa0790550 | Msa1375030 | 0.961033 | 3.099204e-119 | -8.615850e-47 |
| Msa0817460 | Msa1375030 | 0.804658 | 1.943788e-49 | -8.615850e-47 |
| Msa0229590 | Msa1375030 | 0.800039 | 1.737398e-48 | -8.615850e-47 |
| Msa1246360 | Msa1375030 | 0.807028 | 6.173825e-50 | -8.615850e-47 |
| Msa1278660 | Msa1375030 | 0.814312 | 1.643048e-51 | -8.615850e-47 |
| Msa1304890 | Msa1375030 | -0.800181 | 1.625813e-48 | -8.615850e-47 |
| Msa1308870 | Msa1375030 | 0.818873 | 1.561398e-52 | -8.615850e-47 |
| Msa0992680 | Msa1375030 | 0.805076 | 1.589322e-49 | -8.615850e-47 |
| Msa0999680 | Msa1375030 | 0.820076 | 8.301233e-53 | -8.615850e-47 |
| Msa1063400 | Msa1375030 | 0.809759 | 1.614044e-50 | -8.615850e-47 |
| Msa0243480 | Msa1375030 | 0.806643 | 7.447562e-50 | -8.615850e-47 |
| Msa0270060 | Msa1375030 | 0.941510 | 3.665349e-101 | -8.615850e-47 |
| Msa0314070 | Msa1375030 | 0.814801 | 1.280497e-51 | -8.615850e-47 |
| Msa0363790 | Msa1375030 | 0.805041 | 1.616385e-49 | -8.615850e-47 |
| Msa1162780 | Msa1375030 | 0.802151 | 6.428736e-49 | -8.615850e-47 |
| Msa1163090 | Msa1375030 | 0.808133 | 3.598059e-50 | -8.615850e-47 |
| Msa1183890 | Msa1375030 | 0.804733 | 1.874558e-49 | -8.615850e-47 |
| Msa1201200 | Msa1375030 | 0.809780 | 1.597413e-50 | -8.615850e-47 |
| Msa0899970 | Msa1375030 | 0.800027 | 1.746873e-48 | -8.615850e-47 |
| Msa0936530 | Msa1375030 | 0.802256 | 6.114351e-49 | -8.615850e-47 |
| Msa0965080 | Msa1375030 | 0.817117 | 3.894282e-52 | -8.615850e-47 |
| Msa0965290 | Msa1375030 | 0.815978 | 7.005795e-52 | -8.615850e-47 |
| Msa0973520 | Msa1375030 | 0.807302 | 5.402170e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375030 | MtrunA17_Chr2g0276851 | 97.328 | 262 | 0 | 1 | 112 | 373 | 139 | 393 | 0.0 | 540 |
| Msa1375030 | MtrunA17_Chr2g0276851 | 97.917 | 48 | 1 | 0 | 62 | 109 | 1 | 48 | 6.10e-14 | 72.8 |
| Msa1375030 | MtrunA17_Chr1g0189401 | 61.811 | 254 | 92 | 2 | 112 | 364 | 142 | 391 | 3.77e-117 | 345 |
| Msa1375030 | MtrunA17_Chr2g0281421 | 58.366 | 257 | 105 | 1 | 112 | 366 | 138 | 394 | 1.21e-111 | 332 |
| Msa1375030 | MtrunA17_Chr4g0047961 | 51.389 | 288 | 134 | 2 | 77 | 364 | 83 | 364 | 2.59e-107 | 319 |
| Msa1375030 | MtrunA17_Chr7g0227041 | 46.914 | 243 | 112 | 4 | 112 | 354 | 164 | 389 | 7.61e-71 | 227 |
| Msa1375030 | MtrunA17_Chr3g0123571 | 46.473 | 241 | 123 | 5 | 88 | 328 | 135 | 369 | 3.11e-69 | 223 |
| Msa1375030 | MtrunA17_Chr8g0381611 | 52.821 | 195 | 87 | 4 | 112 | 306 | 149 | 338 | 7.91e-68 | 219 |
| Msa1375030 | MtrunA17_Chr8g0381601 | 47.005 | 217 | 110 | 4 | 112 | 328 | 157 | 368 | 4.63e-66 | 214 |
| Msa1375030 | MtrunA17_Chr4g0028891 | 44.856 | 243 | 116 | 6 | 112 | 354 | 178 | 402 | 4.41e-63 | 207 |
| Msa1375030 | MtrunA17_Chr2g0326801 | 43.443 | 244 | 120 | 6 | 112 | 355 | 154 | 379 | 4.58e-62 | 204 |
| Msa1375030 | MtrunA17_Chr3g0095271 | 44.872 | 78 | 20 | 2 | 187 | 263 | 6 | 61 | 3.67e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375030 | AT4G18530.3 | 68.359 | 256 | 77 | 1 | 112 | 363 | 129 | 384 | 9.22e-133 | 385 |
| Msa1375030 | AT4G18530.1 | 68.359 | 256 | 77 | 1 | 112 | 363 | 134 | 389 | 9.89e-133 | 385 |
| Msa1375030 | AT4G12840.3 | 61.538 | 260 | 93 | 1 | 112 | 364 | 41 | 300 | 5.86e-123 | 357 |
| Msa1375030 | AT4G12840.2 | 61.538 | 260 | 93 | 1 | 112 | 364 | 135 | 394 | 8.55e-123 | 360 |
| Msa1375030 | AT4G12840.1 | 61.538 | 260 | 93 | 1 | 112 | 364 | 135 | 394 | 1.35e-122 | 359 |
| Msa1375030 | AT1G11170.1 | 53.261 | 276 | 128 | 1 | 88 | 362 | 119 | 394 | 9.91e-104 | 313 |
| Msa1375030 | AT1G11170.6 | 53.261 | 276 | 128 | 1 | 88 | 362 | 119 | 394 | 9.91e-104 | 313 |
| Msa1375030 | AT1G11170.5 | 53.261 | 276 | 128 | 1 | 88 | 362 | 119 | 394 | 9.91e-104 | 313 |
| Msa1375030 | AT1G11170.7 | 53.261 | 276 | 128 | 1 | 88 | 362 | 119 | 394 | 9.91e-104 | 313 |
| Msa1375030 | AT4G18530.2 | 77.778 | 171 | 38 | 0 | 112 | 282 | 134 | 304 | 2.50e-100 | 300 |
| Msa1375030 | AT1G61240.8 | 54.331 | 254 | 112 | 2 | 111 | 361 | 72 | 324 | 1.01e-99 | 300 |
| Msa1375030 | AT1G61240.4 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.81e-99 | 300 |
| Msa1375030 | AT1G61240.5 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.81e-99 | 300 |
| Msa1375030 | AT1G61240.6 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.81e-99 | 300 |
| Msa1375030 | AT1G61240.2 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.81e-99 | 300 |
| Msa1375030 | AT1G61240.1 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.81e-99 | 300 |
| Msa1375030 | AT1G61240.3 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.81e-99 | 300 |
| Msa1375030 | AT1G11170.4 | 58.824 | 221 | 91 | 0 | 88 | 308 | 119 | 339 | 2.56e-94 | 286 |
| Msa1375030 | AT1G11170.8 | 58.824 | 221 | 91 | 0 | 88 | 308 | 119 | 339 | 2.56e-94 | 286 |
| Msa1375030 | AT1G11170.3 | 58.824 | 221 | 91 | 0 | 88 | 308 | 119 | 339 | 3.47e-94 | 286 |
| Msa1375030 | AT1G61240.7 | 54.894 | 235 | 93 | 1 | 111 | 345 | 139 | 360 | 7.40e-92 | 280 |
| Msa1375030 | AT1G11170.2 | 56.923 | 195 | 84 | 0 | 88 | 282 | 119 | 313 | 1.05e-78 | 245 |
| Msa1375030 | AT3G27470.2 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 4.31e-70 | 225 |
| Msa1375030 | AT3G27470.1 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 4.31e-70 | 225 |
| Msa1375030 | AT3G27470.4 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 4.31e-70 | 225 |
| Msa1375030 | AT3G27470.3 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 4.31e-70 | 225 |
| Msa1375030 | AT3G26440.1 | 46.721 | 244 | 112 | 5 | 112 | 355 | 156 | 381 | 5.69e-70 | 225 |
| Msa1375030 | AT3G26440.2 | 46.721 | 244 | 112 | 5 | 112 | 355 | 156 | 381 | 5.69e-70 | 225 |
| Msa1375030 | AT3G26440.4 | 46.721 | 244 | 112 | 5 | 112 | 355 | 132 | 357 | 6.15e-70 | 224 |
| Msa1375030 | AT3G27470.5 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 6.60e-70 | 225 |
| Msa1375030 | AT3G26440.3 | 50.233 | 215 | 102 | 4 | 112 | 326 | 156 | 365 | 7.75e-70 | 224 |
| Msa1375030 | AT3G26440.5 | 46.721 | 244 | 112 | 5 | 112 | 355 | 179 | 404 | 8.52e-70 | 225 |
| Msa1375030 | AT3G26440.6 | 46.721 | 244 | 112 | 5 | 112 | 355 | 179 | 404 | 1.03e-69 | 225 |
| Msa1375030 | AT1G13000.2 | 52.941 | 204 | 89 | 5 | 112 | 315 | 165 | 361 | 1.54e-69 | 224 |
| Msa1375030 | AT1G13000.5 | 52.941 | 204 | 89 | 5 | 112 | 315 | 165 | 361 | 1.54e-69 | 224 |
| Msa1375030 | AT1G13000.4 | 52.941 | 204 | 89 | 5 | 112 | 315 | 165 | 361 | 1.54e-69 | 224 |
| Msa1375030 | AT1G13000.1 | 52.941 | 204 | 89 | 5 | 112 | 315 | 165 | 361 | 1.54e-69 | 224 |
| Msa1375030 | AT1G08040.3 | 46.288 | 229 | 118 | 4 | 100 | 328 | 132 | 355 | 2.50e-66 | 215 |
| Msa1375030 | AT1G08040.2 | 46.288 | 229 | 118 | 4 | 100 | 328 | 136 | 359 | 2.79e-66 | 215 |
| Msa1375030 | AT1G08040.4 | 46.288 | 229 | 118 | 4 | 100 | 328 | 136 | 359 | 2.79e-66 | 215 |
| Msa1375030 | AT1G08040.1 | 46.288 | 229 | 118 | 4 | 100 | 328 | 136 | 359 | 2.79e-66 | 215 |
| Msa1375030 | AT1G24570.1 | 43.019 | 265 | 128 | 6 | 112 | 373 | 137 | 381 | 1.84e-65 | 213 |
| Msa1375030 | AT1G24570.2 | 43.019 | 265 | 128 | 6 | 112 | 373 | 144 | 388 | 2.50e-65 | 213 |
| Msa1375030 | AT2G28310.2 | 44.262 | 244 | 118 | 5 | 112 | 355 | 141 | 366 | 3.48e-65 | 212 |
| Msa1375030 | AT2G28310.1 | 44.262 | 244 | 118 | 5 | 112 | 355 | 141 | 366 | 3.48e-65 | 212 |
| Msa1375030 | AT2G28310.3 | 44.262 | 244 | 118 | 5 | 112 | 355 | 141 | 366 | 3.48e-65 | 212 |
| Msa1375030 | AT1G67850.4 | 50.490 | 204 | 94 | 5 | 112 | 315 | 145 | 341 | 6.54e-65 | 211 |
| Msa1375030 | AT1G67850.6 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.16e-64 | 211 |
| Msa1375030 | AT1G67850.7 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.16e-64 | 211 |
| Msa1375030 | AT1G67850.1 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.16e-64 | 211 |
| Msa1375030 | AT1G67850.3 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.16e-64 | 211 |
| Msa1375030 | AT1G67850.2 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.16e-64 | 211 |
| Msa1375030 | AT1G67850.5 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.16e-64 | 211 |
| Msa1375030 | AT1G13000.3 | 54.386 | 171 | 74 | 3 | 112 | 282 | 165 | 331 | 4.25e-62 | 202 |
| Msa1375030 | AT1G11170.9 | 55.639 | 133 | 59 | 0 | 88 | 220 | 119 | 251 | 4.53e-46 | 158 |
| Msa1375030 | AT2G25905.1 | 61.111 | 90 | 34 | 1 | 112 | 200 | 138 | 227 | 1.80e-32 | 122 |
Find 86 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGTACACCAATATTTA+AGG | 0.153790 | tig0019619:+19570 | None:intergenic |
| GTCTATCACTATCATCTCTA+TGG | 0.225660 | tig0019619:+20001 | None:intergenic |
| ATATTATCAAATGTTATTAT+TGG | 0.228523 | tig0019619:-19447 | Msa1375030:three_prime_UTR |
| AGAAGGTATTATAAGTTTAA+AGG | 0.258399 | tig0019619:-21143 | Msa1375030:CDS |
| TATTATCAAATGTTATTATT+GGG | 0.278405 | tig0019619:-19446 | Msa1375030:three_prime_UTR |
| ATGTCAGGGTGTTGTCTTTC+CGG | 0.282197 | tig0019619:-23762 | Msa1375030:intron |
| TCATTCATTCCCTTAAATAT+TGG | 0.290186 | tig0019619:-19580 | Msa1375030:three_prime_UTR |
| AATAACATTTGATAATATTT+CGG | 0.296138 | tig0019619:+19452 | None:intergenic |
| TTGTCTTCTTCACTCAGTTC+AGG | 0.309094 | tig0019619:-24056 | Msa1375030:CDS |
| TCATTCATCAAAATATGATA+TGG | 0.328431 | tig0019619:+19686 | None:intergenic |
| ATCTTGGCCTGCCCACTCTC+GGG | 0.330732 | tig0019619:-20296 | Msa1375030:CDS |
| GAAGAAAGGTAGGAGTATAT+TGG | 0.332630 | tig0019619:+24181 | None:intergenic |
| AAGGGAAAAGAATAAGAATA+AGG | 0.339192 | tig0019619:+24118 | None:intergenic |
| TTTGCCTGTTGTTGTTCATA+TGG | 0.345241 | tig0019619:+19805 | None:intergenic |
| CAAAATCCAAGTTCATTTCA+TGG | 0.350109 | tig0019619:-19741 | Msa1375030:three_prime_UTR |
| CATCTTGGCCTGCCCACTCT+CGG | 0.356953 | tig0019619:-20297 | Msa1375030:CDS |
| TTAAATATTGGTGTACATAA+AGG | 0.362990 | tig0019619:-19568 | Msa1375030:three_prime_UTR |
| ACTACAATTATATATTTCTC+TGG | 0.371844 | tig0019619:-22599 | Msa1375030:CDS |
| GGTGGTATAGATGTGTTAAT+AGG | 0.380200 | tig0019619:-19547 | Msa1375030:three_prime_UTR |
| TTATCTATTGTTAAAGAAGA+AGG | 0.390831 | tig0019619:-21713 | Msa1375030:CDS |
| TATTATAAGTTTAAAGGTAG+TGG | 0.396361 | tig0019619:-21137 | Msa1375030:CDS |
| ATTCTTCTTTCCTTGATTTG+CGG | 0.396540 | tig0019619:-23704 | Msa1375030:CDS |
| TTATGTACACCAATATTTAA+GGG | 0.409372 | tig0019619:+19571 | None:intergenic |
| TTGTAGTCAGCAACTATGTC+TGG | 0.429649 | tig0019619:+22615 | None:intergenic |
| CTGCTATAAATCAAACGAAA+TGG | 0.446330 | tig0019619:-22760 | Msa1375030:intron |
| AGCACCGCTCCTCCTTGCTT+AGG | 0.450748 | tig0019619:-21098 | Msa1375030:CDS |
| TGAATGACTGAAATCACAAA+AGG | 0.455900 | tig0019619:+19596 | None:intergenic |
| CTCTGAAGGTCAGTGTAAAT+AGG | 0.456682 | tig0019619:-19483 | Msa1375030:three_prime_UTR |
| CATTATGATGGCTTTGTGGA+TGG | 0.458349 | tig0019619:-22824 | Msa1375030:CDS |
| AGAAGAAGAATGATTGGAAA+GGG | 0.461998 | tig0019619:+24100 | None:intergenic |
| TACTCCTACCTTTCTTCGCT+CGG | 0.462317 | tig0019619:-24175 | Msa1375030:CDS |
| TGATCCATATGAACAACAAC+AGG | 0.469510 | tig0019619:-19809 | Msa1375030:CDS |
| CTTAATCCATGCCTGGGGAC+TGG | 0.471837 | tig0019619:-20478 | Msa1375030:CDS |
| TCTGAGTACATAGTTCATCT+TGG | 0.472659 | tig0019619:-20312 | Msa1375030:CDS |
| TCTTGGCCTGCCCACTCTCG+GGG | 0.475856 | tig0019619:-20295 | Msa1375030:CDS |
| TATCTATTGTTAAAGAAGAA+GGG | 0.479300 | tig0019619:-21712 | Msa1375030:CDS |
| ATTTATAGCAGACACATGTA+TGG | 0.483134 | tig0019619:+22772 | None:intergenic |
| TCACAGCCTGCACTGGATCC+TGG | 0.484940 | tig0019619:-21680 | Msa1375030:CDS |
| AGAATGACTTAATCCATGCC+TGG | 0.487002 | tig0019619:-20485 | Msa1375030:CDS |
| AAAATAAGCGCCGCAAATCA+AGG | 0.491462 | tig0019619:+23694 | None:intergenic |
| GCACCGCTCCTCCTTGCTTA+GGG | 0.492013 | tig0019619:-21097 | Msa1375030:intron |
| TGTTGACCATGAAATGAACT+TGG | 0.495379 | tig0019619:+19735 | None:intergenic |
| AGAGATATCACAGCCTGCAC+TGG | 0.500200 | tig0019619:-21687 | Msa1375030:CDS |
| GTCTGTCCAGTCCCCAGGCA+TGG | 0.503621 | tig0019619:+20472 | None:intergenic |
| CAGACCGACCGAGCGAAGAA+AGG | 0.514238 | tig0019619:+24167 | None:intergenic |
| CTATTTACACTGACCTTCAG+AGG | 0.515012 | tig0019619:+19484 | None:intergenic |
| AAGAAGAAGAATGATTGGAA+AGG | 0.520676 | tig0019619:+24099 | None:intergenic |
| TGATGTATTTCTGATTTACC+AGG | 0.521088 | tig0019619:+21662 | None:intergenic |
| TTATATATTTCTCTGGGATG+AGG | 0.522681 | tig0019619:-22592 | Msa1375030:CDS |
| ATGGATGGAAGAATTTAGCT+TGG | 0.524891 | tig0019619:-22805 | Msa1375030:CDS |
| GCAGTCGTATATTGAAATGC+AGG | 0.528288 | tig0019619:-19881 | Msa1375030:CDS |
| TGGGGACTGGACAGACAACT+TGG | 0.530926 | tig0019619:-20465 | Msa1375030:CDS |
| TCTATCACTATCATCTCTAT+GGG | 0.531315 | tig0019619:+20002 | None:intergenic |
| AAGTTGTCTGTCCAGTCCCC+AGG | 0.535291 | tig0019619:+20467 | None:intergenic |
| GAATGACTTAATCCATGCCT+GGG | 0.537430 | tig0019619:-20484 | Msa1375030:CDS |
| ATGTGTATGGCATATGATCC+AGG | 0.543942 | tig0019619:-20925 | Msa1375030:intron |
| GATTTACCAGGATCCAGTGC+AGG | 0.550120 | tig0019619:+21674 | None:intergenic |
| CTACAATTATATATTTCTCT+GGG | 0.550211 | tig0019619:-22598 | Msa1375030:CDS |
| TGGCAATGCATTCTCTGCAA+AGG | 0.554079 | tig0019619:-23669 | Msa1375030:CDS |
| GGTCAAAATTATCGACAAGA+AGG | 0.554786 | tig0019619:+22568 | None:intergenic |
| CCGACCGAGCGAAGAAAGGT+AGG | 0.562740 | tig0019619:+24171 | None:intergenic |
| ACAACTTGGTTATTGTGCAC+AGG | 0.563090 | tig0019619:-20451 | Msa1375030:intron |
| TGATATGGTGTGTGCGACTT+CGG | 0.566073 | tig0019619:+19701 | None:intergenic |
| GGTATAGATGTGTTAATAGG+AGG | 0.566147 | tig0019619:-19544 | Msa1375030:three_prime_UTR |
| CCACTGACAGTTCATAAAGC+AGG | 0.566749 | tig0019619:-21638 | Msa1375030:CDS |
| TTACAGATGGGTGGAAATGA+TGG | 0.567117 | tig0019619:-20976 | Msa1375030:intron |
| CCTACCTTTCTTCGCTCGGT+CGG | 0.567657 | tig0019619:-24171 | Msa1375030:CDS |
| ATGATGGCTTTGTGGATGGA+TGG | 0.570009 | tig0019619:-22820 | Msa1375030:CDS |
| GAATGACTGAAATCACAAAA+GGG | 0.572973 | tig0019619:+19597 | None:intergenic |
| ATAAGTTTAAAGGTAGTGGA+AGG | 0.575466 | tig0019619:-21133 | Msa1375030:CDS |
| CATATGGATCAATCCAACAT+TGG | 0.600150 | tig0019619:+19821 | None:intergenic |
| TATTTACACTGACCTTCAGA+GGG | 0.603413 | tig0019619:+19485 | None:intergenic |
| GAAGAATGAGGAGTGTCCAA+AGG | 0.608039 | tig0019619:+23720 | None:intergenic |
| AATATTGGTGTACATAAAGG+TGG | 0.609781 | tig0019619:-19565 | Msa1375030:three_prime_UTR |
| GTCAGTGTAAATAGGTCACA+TGG | 0.622001 | tig0019619:-19475 | Msa1375030:three_prime_UTR |
| GCAACTGTTTACCCTAAGCA+AGG | 0.637068 | tig0019619:+21086 | None:intergenic |
| CCTGCTTTATGAACTGTCAG+TGG | 0.637785 | tig0019619:+21638 | None:intergenic |
| AAATCAAGGAAAGAAGAATG+AGG | 0.639950 | tig0019619:+23708 | None:intergenic |
| CTTGGCCTGCCCACTCTCGG+GGG | 0.641965 | tig0019619:-20294 | Msa1375030:CDS |
| TAACTTGTATTACAGATGGG+TGG | 0.651700 | tig0019619:-20985 | Msa1375030:intron |
| AAGCAGGATCAAAAGTACAC+AGG | 0.658718 | tig0019619:-21622 | Msa1375030:intron |
| TTACCCTAAGCAAGGAGGAG+CGG | 0.668467 | tig0019619:+21094 | None:intergenic |
| TGAGTGAAGAAGACAAGACA+AGG | 0.671986 | tig0019619:+24063 | None:intergenic |
| AATGACTTAATCCATGCCTG+GGG | 0.719521 | tig0019619:-20483 | Msa1375030:CDS |
| ACTGTTTACCCTAAGCAAGG+AGG | 0.728598 | tig0019619:+21089 | None:intergenic |
| ATTTACACTGACCTTCAGAG+GGG | 0.761829 | tig0019619:+19486 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAACATTTGATAATATTT+CGG | + | tig0019619:24162-24181 | None:intergenic | 10.0% |
| !! | ATATTATCAAATGTTATTAT+TGG | - | tig0019619:24164-24183 | Msa1375030:CDS | 10.0% |
| !! | TATTATCAAATGTTATTATT+GGG | - | tig0019619:24165-24184 | Msa1375030:CDS | 10.0% |
| !! | TGTTTAATATTTACAGATAT+AGG | + | tig0019619:20925-20944 | None:intergenic | 15.0% |
| !!! | TAATTTATCTTAATTTTCAC+TGG | + | tig0019619:22748-22767 | None:intergenic | 15.0% |
| !!! | AGAATTTTTTTGACATTTTT+TGG | - | tig0019619:22832-22851 | Msa1375030:CDS | 15.0% |
| !!! | ATCACTTTTTTAGTTAAATT+TGG | - | tig0019619:23479-23498 | Msa1375030:intron | 15.0% |
| !!! | TAGATTCTTTGTTTATTAAA+GGG | + | tig0019619:23688-23707 | None:intergenic | 15.0% |
| !! | GTAGAACTAGAATATAATTA+AGG | + | tig0019619:19702-19721 | None:intergenic | 20.0% |
| !! | GGAAGTAATTAGAAATAAAA+TGG | + | tig0019619:20157-20176 | None:intergenic | 20.0% |
| !! | AAATTTGAGCTTAACATTAA+CGG | + | tig0019619:20367-20386 | None:intergenic | 20.0% |
| !!! | AGCTTTTTGTCTATAAATTA+GGG | - | tig0019619:20502-20521 | Msa1375030:intron | 20.0% |
| !! | ACTACAATTATATATTTCTC+TGG | - | tig0019619:21012-21031 | Msa1375030:intron | 20.0% |
| !! | CTACAATTATATATTTCTCT+GGG | - | tig0019619:21013-21032 | Msa1375030:intron | 20.0% |
| !! | AAATTCAATTTATCCATCAA+TGG | + | tig0019619:21237-21256 | None:intergenic | 20.0% |
| !! | TATTAAGTAAATTAGTCACT+AGG | - | tig0019619:21593-21612 | Msa1375030:intron | 20.0% |
| !!! | TATTGTCTTTTCTATTTTTC+TGG | - | tig0019619:21767-21786 | Msa1375030:intron | 20.0% |
| !! | AAATCAACAAATCAAAACAT+GGG | + | tig0019619:21865-21884 | None:intergenic | 20.0% |
| !! | AAAATCAACAAATCAAAACA+TGG | + | tig0019619:21866-21885 | None:intergenic | 20.0% |
| !! | TTATCTATTGTTAAAGAAGA+AGG | - | tig0019619:21898-21917 | Msa1375030:intron | 20.0% |
| !! | TATCTATTGTTAAAGAAGAA+GGG | - | tig0019619:21899-21918 | Msa1375030:intron | 20.0% |
| !! | TCGAGAGATAAATTATTTAA+GGG | + | tig0019619:22338-22357 | None:intergenic | 20.0% |
| !!! | AGAAGGTATTATAAGTTTAA+AGG | - | tig0019619:22468-22487 | Msa1375030:intron | 20.0% |
| !! | TATTATAAGTTTAAAGGTAG+TGG | - | tig0019619:22474-22493 | Msa1375030:intron | 20.0% |
| !! | TAACATCACAAATGATATAA+CGG | + | tig0019619:22579-22598 | None:intergenic | 20.0% |
| !!! | ATTTTTTGGTTATTCAAGTA+AGG | - | tig0019619:22846-22865 | Msa1375030:CDS | 20.0% |
| !! | ACAATTAACATTATGTACAT+TGG | - | tig0019619:22875-22894 | Msa1375030:intron | 20.0% |
| !! | TTATATTTAGTAACAGACAA+TGG | + | tig0019619:22907-22926 | None:intergenic | 20.0% |
| !!! | ACTAAATATAAAGCTCATTT+TGG | - | tig0019619:22916-22935 | Msa1375030:intron | 20.0% |
| !!! | CTAAATATAAAGCTCATTTT+GGG | - | tig0019619:22917-22936 | Msa1375030:intron | 20.0% |
| !!! | TAAATATAAAGCTCATTTTG+GGG | - | tig0019619:22918-22937 | Msa1375030:intron | 20.0% |
| !!! | ATCTTTTTGTAATTTGAGAT+GGG | + | tig0019619:22967-22986 | None:intergenic | 20.0% |
| !!! | AAATTTACTTGTGTTTTAAG+TGG | - | tig0019619:23531-23550 | Msa1375030:intron | 20.0% |
| !!! | TTAACAAAGCTTTTGTATAT+TGG | - | tig0019619:23566-23585 | Msa1375030:intron | 20.0% |
| !!! | GTAGATTCTTTGTTTATTAA+AGG | + | tig0019619:23689-23708 | None:intergenic | 20.0% |
| !! | TCATTCATCAAAATATGATA+TGG | + | tig0019619:23928-23947 | None:intergenic | 20.0% |
| !! | TTATGTACACCAATATTTAA+GGG | + | tig0019619:24043-24062 | None:intergenic | 20.0% |
| !! | TTTATGTACACCAATATTTA+AGG | + | tig0019619:24044-24063 | None:intergenic | 20.0% |
| !! | TTAAATATTGGTGTACATAA+AGG | - | tig0019619:24043-24062 | Msa1375030:CDS | 20.0% |
| ! | AAGGGAAAAGAATAAGAATA+AGG | + | tig0019619:19496-19515 | None:intergenic | 25.0% |
| !!! | ATGCAAGGTTTGTTATATTT+GGG | - | tig0019619:20118-20137 | Msa1375030:intron | 25.0% |
| !! | CAGCTTTTTGTCTATAAATT+AGG | - | tig0019619:20501-20520 | Msa1375030:intron | 25.0% |
| ! | ATGTCATCAATTGAAAAAAG+AGG | + | tig0019619:20556-20575 | None:intergenic | 25.0% |
| ! | AAATAGCCAACAAATTCAAT+GGG | + | tig0019619:20606-20625 | None:intergenic | 25.0% |
| !! | TGTTGATAAAATCGTCAAAA+AGG | - | tig0019619:20651-20670 | Msa1375030:intron | 25.0% |
| ! | ACATATAACATGAACTAATG+CGG | - | tig0019619:21172-21191 | Msa1375030:intron | 25.0% |
| ! | TTATAGTTATGTTATGTGCA+AGG | + | tig0019619:21296-21315 | None:intergenic | 25.0% |
| ! | TAACATAACTATAAACCCTA+TGG | - | tig0019619:21302-21321 | Msa1375030:intron | 25.0% |
| ! | AACATAACTATAAACCCTAT+GGG | - | tig0019619:21303-21322 | Msa1375030:intron | 25.0% |
| !! | AATTCTTTGTTTCAGATTGT+TGG | - | tig0019619:21458-21477 | Msa1375030:intron | 25.0% |
| ! | CATACACTACAAATATATAG+AGG | + | tig0019619:21692-21711 | None:intergenic | 25.0% |
| ! | AATCAACAAATCAAAACATG+GGG | + | tig0019619:21864-21883 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTGTTGATTTTC+TGG | - | tig0019619:21867-21886 | Msa1375030:intron | 25.0% |
| ! | ATATAACTTGAAAACTGACA+AGG | + | tig0019619:22135-22154 | None:intergenic | 25.0% |
| ! | AATATATGTACACAGTCTAA+CGG | - | tig0019619:22160-22179 | Msa1375030:intron | 25.0% |
| ! | GTCGAGAGATAAATTATTTA+AGG | + | tig0019619:22339-22358 | None:intergenic | 25.0% |
| ! | AGTTAAAAAGAAAATCACAC+AGG | + | tig0019619:22556-22575 | None:intergenic | 25.0% |
| !! | TAAGTAACTTGTATTACAGA+TGG | - | tig0019619:22622-22641 | Msa1375030:CDS | 25.0% |
| !! | AAGTAACTTGTATTACAGAT+GGG | - | tig0019619:22623-22642 | Msa1375030:CDS | 25.0% |
| !!! | CAAGATTTTTTAGAAAACAC+TGG | + | tig0019619:22663-22682 | None:intergenic | 25.0% |
| !!! | CAGTGTTTTCTAAAAAATCT+TGG | - | tig0019619:22661-22680 | Msa1375030:intron | 25.0% |
| !! | GATCTTTTTGTAATTTGAGA+TGG | + | tig0019619:22968-22987 | None:intergenic | 25.0% |
| ! | TTCTTGCAAGTTAAAACAAA+AGG | - | tig0019619:23037-23056 | Msa1375030:intron | 25.0% |
| ! | ATCATAAGCATACTTACTTT+AGG | + | tig0019619:23635-23654 | None:intergenic | 25.0% |
| ! | TAAACAAAGAATCTACTACA+TGG | - | tig0019619:23693-23712 | Msa1375030:CDS | 25.0% |
| !! | TATATTGAAATGCAGGTTTT+TGG | - | tig0019619:23737-23756 | Msa1375030:CDS | 25.0% |
| !! | ATATTGAAATGCAGGTTTTT+GGG | - | tig0019619:23738-23757 | Msa1375030:CDS | 25.0% |
| !! | TGATGTTTCAATGATTTTAC+AGG | - | tig0019619:23978-23997 | Msa1375030:intron | 25.0% |
| ! | TCATTCATTCCCTTAAATAT+TGG | - | tig0019619:24031-24050 | Msa1375030:CDS | 25.0% |
| AGAAGAAGAATGATTGGAAA+GGG | + | tig0019619:19514-19533 | None:intergenic | 30.0% | |
| AAGAAGAAGAATGATTGGAA+AGG | + | tig0019619:19515-19534 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAATGAT+TGG | + | tig0019619:19520-19539 | None:intergenic | 30.0% | |
| AACCAAATAATGATGATCTG+AGG | + | tig0019619:19635-19654 | None:intergenic | 30.0% | |
| !!! | AACAACCTATTTTTTGGATC+CGG | + | tig0019619:19871-19890 | None:intergenic | 30.0% |
| !!! | CAAAGGAACAACCTATTTTT+TGG | + | tig0019619:19877-19896 | None:intergenic | 30.0% |
| CAAAAAATAGGTTGTTCCTT+TGG | - | tig0019619:19875-19894 | Msa1375030:CDS | 30.0% | |
| AAATCAAGGAAAGAAGAATG+AGG | + | tig0019619:19906-19925 | None:intergenic | 30.0% | |
| ! | ATTCTTCTTTCCTTGATTTG+CGG | - | tig0019619:19907-19926 | Msa1375030:intron | 30.0% |
| TAATTGGATGTTGTTGTATC+CGG | + | tig0019619:20092-20111 | None:intergenic | 30.0% | |
| ATCCAATTATAATGCATGCA+AGG | - | tig0019619:20103-20122 | Msa1375030:intron | 30.0% | |
| AACCTTGCATGCATTATAAT+TGG | + | tig0019619:20108-20127 | None:intergenic | 30.0% | |
| !! | CATGCAAGGTTTGTTATATT+TGG | - | tig0019619:20117-20136 | Msa1375030:intron | 30.0% |
| !! | TGCAAGGTTTGTTATATTTG+GGG | - | tig0019619:20119-20138 | Msa1375030:intron | 30.0% |
| ! | GTTTCTAGGGAAATAAAAAG+AGG | + | tig0019619:20203-20222 | None:intergenic | 30.0% |
| ! | ATCAAGTATTTGTTTCTCCT+TGG | - | tig0019619:20401-20420 | Msa1375030:intron | 30.0% |
| GAAATAGCCAACAAATTCAA+TGG | + | tig0019619:20607-20626 | None:intergenic | 30.0% | |
| !! | AATTTGTTGGCTATTTCAGT+AGG | - | tig0019619:20610-20629 | Msa1375030:intron | 30.0% |
| !!! | GTGATGCTTTTTCATTATGA+TGG | - | tig0019619:20775-20794 | Msa1375030:intron | 30.0% |
| !! | TTTTCATTATGATGGCTTTG+TGG | - | tig0019619:20783-20802 | Msa1375030:intron | 30.0% |
| ATTTATAGCAGACACATGTA+TGG | + | tig0019619:20842-20861 | None:intergenic | 30.0% | |
| CTGCTATAAATCAAACGAAA+TGG | - | tig0019619:20851-20870 | Msa1375030:intron | 30.0% | |
| AATTCTCTCTATCATGACAT+AGG | - | tig0019619:20949-20968 | Msa1375030:CDS | 30.0% | |
| !! | TTATATATTTCTCTGGGATG+AGG | - | tig0019619:21019-21038 | Msa1375030:intron | 30.0% |
| AATTTATCCATCAATGGTGT+TGG | + | tig0019619:21231-21250 | None:intergenic | 30.0% | |
| !!! | TTTTCGAGTTGGTAACATTT+TGG | - | tig0019619:21332-21351 | Msa1375030:intron | 30.0% |
| GCAAGTGAAAATTACAATGT+CGG | + | tig0019619:21358-21377 | None:intergenic | 30.0% | |
| ! | TAATTTTCACTTGCAAAACC+AGG | - | tig0019619:21364-21383 | Msa1375030:intron | 30.0% |
| TTTGTTTCAGATTGTTGGAA+TGG | - | tig0019619:21463-21482 | Msa1375030:intron | 30.0% | |
| TCATCATCTGTGTAGAAAAA+AGG | + | tig0019619:21831-21850 | None:intergenic | 30.0% | |
| !!! | GATTTGTTGATTTTCTGGTT+AGG | - | tig0019619:21872-21891 | Msa1375030:intron | 30.0% |
| ! | TGATGTATTTCTGATTTACC+AGG | + | tig0019619:21952-21971 | None:intergenic | 30.0% |
| !! | TCATTAATAGAGTACTGCAT+TGG | + | tig0019619:22093-22112 | None:intergenic | 30.0% |
| !! | ATAAGTTTAAAGGTAGTGGA+AGG | - | tig0019619:22478-22497 | Msa1375030:intron | 30.0% |
| AAAAATCTTGGCAATGTGTA+TGG | - | tig0019619:22673-22692 | Msa1375030:intron | 30.0% | |
| TTTGAGAACGTTATATGACA+TGG | - | tig0019619:22774-22793 | Msa1375030:CDS | 30.0% | |
| ATATCTAAATCCTTCCAGTA+TGG | - | tig0019619:23217-23236 | Msa1375030:intron | 30.0% | |
| TTGAAGATTTATCATCCTAG+TGG | - | tig0019619:23451-23470 | Msa1375030:intron | 30.0% | |
| AAAAAGTGATTACTACCACT+AGG | + | tig0019619:23469-23488 | None:intergenic | 30.0% | |
| !!! | CTTTTGTATATTGGTTTGCA+GGG | - | tig0019619:23575-23594 | Msa1375030:intron | 30.0% |
| !!! | TTTTGTATATTGGTTTGCAG+GGG | - | tig0019619:23576-23595 | Msa1375030:intron | 30.0% |
| TCTATCACTATCATCTCTAT+GGG | + | tig0019619:23612-23631 | None:intergenic | 30.0% | |
| CAAAATCCAAGTTCATTTCA+TGG | - | tig0019619:23870-23889 | Msa1375030:intron | 30.0% | |
| GAATGACTGAAATCACAAAA+GGG | + | tig0019619:24017-24036 | None:intergenic | 30.0% | |
| TGAATGACTGAAATCACAAA+AGG | + | tig0019619:24018-24037 | None:intergenic | 30.0% | |
| AATATTGGTGTACATAAAGG+TGG | - | tig0019619:24046-24065 | Msa1375030:CDS | 30.0% | |
| ! | GAAGAAAGGTAGGAGTATAT+TGG | + | tig0019619:19433-19452 | None:intergenic | 35.0% |
| CTCCTCAGATCATCATTATT+TGG | - | tig0019619:19630-19649 | Msa1375030:three_prime_UTR | 35.0% | |
| AGACAAGACATGCAATAGAA+TGG | + | tig0019619:19675-19694 | None:intergenic | 35.0% | |
| ATGTCATGTAATGTCATGTC+AGG | - | tig0019619:19834-19853 | Msa1375030:CDS | 35.0% | |
| TGTCATGTAATGTCATGTCA+GGG | - | tig0019619:19835-19854 | Msa1375030:CDS | 35.0% | |
| TCTTTCCGGATCCAAAAAAT+AGG | - | tig0019619:19863-19882 | Msa1375030:CDS | 35.0% | |
| !! | GTTTTCTTTTTTGCAGAGAC+TGG | - | tig0019619:20040-20059 | Msa1375030:intron | 35.0% |
| GGGACTAATTTATTCAATGC+CGG | - | tig0019619:20070-20089 | Msa1375030:intron | 35.0% | |
| !! | GCAAGGTTTGTTATATTTGG+GGG | - | tig0019619:20120-20139 | Msa1375030:intron | 35.0% |
| GAGAATTAGCTAGAGGTAAT+GGG | + | tig0019619:20178-20197 | None:intergenic | 35.0% | |
| AGAGAATTAGCTAGAGGTAA+TGG | + | tig0019619:20179-20198 | None:intergenic | 35.0% | |
| ATTAGAGCATGAAGTGAAGT+TGG | + | tig0019619:20343-20362 | None:intergenic | 35.0% | |
| TGGTTCAAGATTAAACTCCA+AGG | + | tig0019619:20421-20440 | None:intergenic | 35.0% | |
| GAATCTGCATATCAGATTAC+TGG | + | tig0019619:20441-20460 | None:intergenic | 35.0% | |
| ! | TTCAATTGATGACATCTACC+TGG | - | tig0019619:20561-20580 | Msa1375030:intron | 35.0% |
| ATCACAACAAAATCACCTGA+CGG | + | tig0019619:20760-20779 | None:intergenic | 35.0% | |
| ATGGATGGAAGAATTTAGCT+TGG | - | tig0019619:20806-20825 | Msa1375030:intron | 35.0% | |
| !!! | GTTAATTTGTTTTCCCTCTG+TGG | - | tig0019619:20890-20909 | Msa1375030:intron | 35.0% |
| GGTCAAAATTATCGACAAGA+AGG | + | tig0019619:21046-21065 | None:intergenic | 35.0% | |
| !! | TCGATAATTTTGACCCGAAA+AGG | - | tig0019619:21051-21070 | Msa1375030:intron | 35.0% |
| !! | AATTTTGACCCGAAAAGGTA+AGG | - | tig0019619:21056-21075 | Msa1375030:intron | 35.0% |
| ! | GTAACAATTGAGTGTTGCAA+AGG | + | tig0019619:21131-21150 | None:intergenic | 35.0% |
| ! | TGAACTAATGCGGATCTTTT+TGG | - | tig0019619:21182-21201 | Msa1375030:intron | 35.0% |
| GAATTTCTTTGTTAAGCTCG+CGG | - | tig0019619:21251-21270 | Msa1375030:intron | 35.0% | |
| AATTTCTTTGTTAAGCTCGC+GGG | - | tig0019619:21252-21271 | Msa1375030:intron | 35.0% | |
| CAGTCTTACAAGCAAACTTA+TGG | - | tig0019619:21662-21681 | Msa1375030:CDS | 35.0% | |
| AAAGGACCTAAAGGTGAAAA+TGG | + | tig0019619:21813-21832 | None:intergenic | 35.0% | |
| GTGTAGAAAAAAGGACCTAA+AGG | + | tig0019619:21822-21841 | None:intergenic | 35.0% | |
| GTTTAGCAACAACACTCATT+CGG | - | tig0019619:22040-22059 | Msa1375030:intron | 35.0% | |
| !! | AATAGAGTACTGCATTGGTT+GGG | + | tig0019619:22088-22107 | None:intergenic | 35.0% |
| !! | TAATAGAGTACTGCATTGGT+TGG | + | tig0019619:22089-22108 | None:intergenic | 35.0% |
| ATAATTTATCTCTCGACTCC+TGG | - | tig0019619:22342-22361 | Msa1375030:intron | 35.0% | |
| TAATTTATCTCTCGACTCCT+GGG | - | tig0019619:22343-22362 | Msa1375030:intron | 35.0% | |
| ATGAATGAGTATACATTCCC+AGG | + | tig0019619:22363-22382 | None:intergenic | 35.0% | |
| ! | TAACTTGTATTACAGATGGG+TGG | - | tig0019619:22626-22645 | Msa1375030:CDS | 35.0% |
| !! | TTGCTTTTCTTATCCATACC+TGG | + | tig0019619:22707-22726 | None:intergenic | 35.0% |
| TTGAGATGGGACTATATGTA+GGG | + | tig0019619:22954-22973 | None:intergenic | 35.0% | |
| ! | TTTGAGATGGGACTATATGT+AGG | + | tig0019619:22955-22974 | None:intergenic | 35.0% |
| TCCAATATTTCGATTCTGCA+TGG | - | tig0019619:23064-23083 | Msa1375030:intron | 35.0% | |
| ACCATGCAGAATCGAAATAT+TGG | + | tig0019619:23068-23087 | None:intergenic | 35.0% | |
| ATTTAGATATGCCACGAACA+TGG | + | tig0019619:23207-23226 | None:intergenic | 35.0% | |
| TCATCTCTCAGCAATATTTC+AGG | - | tig0019619:23244-23263 | Msa1375030:intron | 35.0% | |
| CATCTCTCAGCAATATTTCA+GGG | - | tig0019619:23245-23264 | Msa1375030:intron | 35.0% | |
| GGTGATCGAATGAAAAATGT+AGG | - | tig0019619:23266-23285 | Msa1375030:intron | 35.0% | |
| TCGAATGAAAAATGTAGGTG+TGG | - | tig0019619:23271-23290 | Msa1375030:intron | 35.0% | |
| AATGAAAAATGTAGGTGTGG+TGG | - | tig0019619:23274-23293 | Msa1375030:intron | 35.0% | |
| TCTGAGTACATAGTTCATCT+TGG | - | tig0019619:23299-23318 | Msa1375030:intron | 35.0% | |
| ATATACCTTGTCTCTAAACG+CGG | - | tig0019619:23390-23409 | Msa1375030:intron | 35.0% | |
| TCTAAACGCGGTACATAAAA+TGG | - | tig0019619:23402-23421 | Msa1375030:intron | 35.0% | |
| !!! | GCTTTTGTATATTGGTTTGC+AGG | - | tig0019619:23574-23593 | Msa1375030:intron | 35.0% |
| GTCTATCACTATCATCTCTA+TGG | + | tig0019619:23613-23632 | None:intergenic | 35.0% | |
| ATGGAAAGATGCAGCAAAAA+AGG | - | tig0019619:23766-23785 | Msa1375030:intron | 35.0% | |
| CATATGGATCAATCCAACAT+TGG | + | tig0019619:23793-23812 | None:intergenic | 35.0% | |
| TGATCCATATGAACAACAAC+AGG | - | tig0019619:23802-23821 | Msa1375030:intron | 35.0% | |
| ! | TTTGCCTGTTGTTGTTCATA+TGG | + | tig0019619:23809-23828 | None:intergenic | 35.0% |
| !! | AGTCATTAGTCTGTTTTGTG+AGG | - | tig0019619:23836-23855 | Msa1375030:intron | 35.0% |
| TGTTGACCATGAAATGAACT+TGG | + | tig0019619:23879-23898 | None:intergenic | 35.0% | |
| GGTGGTATAGATGTGTTAAT+AGG | - | tig0019619:24064-24083 | Msa1375030:CDS | 35.0% | |
| GGTATAGATGTGTTAATAGG+AGG | - | tig0019619:24067-24086 | Msa1375030:CDS | 35.0% | |
| TATTTACACTGACCTTCAGA+GGG | + | tig0019619:24129-24148 | None:intergenic | 35.0% | |
| TGAGTGAAGAAGACAAGACA+AGG | + | tig0019619:19551-19570 | None:intergenic | 40.0% | |
| TTGTCTTCTTCACTCAGTTC+AGG | - | tig0019619:19555-19574 | Msa1375030:three_prime_UTR | 40.0% | |
| ATCTGAGGAGAACGAACTTA+CGG | + | tig0019619:19620-19639 | None:intergenic | 40.0% | |
| AGACATGCAATAGAATGGTC+TGG | + | tig0019619:19670-19689 | None:intergenic | 40.0% | |
| ! | AAAATAAGCGCCGCAAATCA+AGG | + | tig0019619:19920-19939 | None:intergenic | 40.0% |
| !! | ATTTGCGGCGCTTATTTTCT+TGG | - | tig0019619:19922-19941 | Msa1375030:intron | 40.0% |
| !! | GGTTTGTTATATTTGGGGGT+AGG | - | tig0019619:20124-20143 | Msa1375030:intron | 40.0% |
| TTGTTATATTTGGGGGTAGG+AGG | - | tig0019619:20127-20146 | Msa1375030:intron | 40.0% | |
| AGAGGAAGAGAATTAGCTAG+AGG | + | tig0019619:20185-20204 | None:intergenic | 40.0% | |
| GAACCACCCATTGAATTTGT+TGG | - | tig0019619:20597-20616 | Msa1375030:intron | 40.0% | |
| TAGCCAACAAATTCAATGGG+TGG | + | tig0019619:20603-20622 | None:intergenic | 40.0% | |
| TCACAACAAAATCACCTGAC+GGG | + | tig0019619:20759-20778 | None:intergenic | 40.0% | |
| !! | CATTATGATGGCTTTGTGGA+TGG | - | tig0019619:20787-20806 | Msa1375030:intron | 40.0% |
| TCTCTCTATCATGACATAGG+TGG | - | tig0019619:20952-20971 | Msa1375030:CDS | 40.0% | |
| TTGTAGTCAGCAACTATGTC+TGG | + | tig0019619:20999-21018 | None:intergenic | 40.0% | |
| !! | ATGGTGTTGGTGAAGAAACA+TGG | + | tig0019619:21218-21237 | None:intergenic | 40.0% |
| TTCTTCACCAACACCATTGA+TGG | - | tig0019619:21221-21240 | Msa1375030:intron | 40.0% | |
| CTCGAAAAAGACATCCCATA+GGG | + | tig0019619:21320-21339 | None:intergenic | 40.0% | |
| ACTCGAAAAAGACATCCCAT+AGG | + | tig0019619:21321-21340 | None:intergenic | 40.0% | |
| !!! | ATGGGATGTCTTTTTCGAGT+TGG | - | tig0019619:21321-21340 | Msa1375030:intron | 40.0% |
| ! | TCTCCACCATTTTCACCTTT+AGG | - | tig0019619:21804-21823 | Msa1375030:intron | 40.0% |
| ! | AAGCAGGATCAAAAGTACAC+AGG | - | tig0019619:21989-22008 | Msa1375030:intron | 40.0% |
| TGTTGTTGCTAAACAGCTAG+AGG | + | tig0019619:22034-22053 | None:intergenic | 40.0% | |
| TTATGCTGTCTCTGTACAGA+AGG | - | tig0019619:22451-22470 | Msa1375030:intron | 40.0% | |
| TTACAGATGGGTGGAAATGA+TGG | - | tig0019619:22635-22654 | Msa1375030:CDS | 40.0% | |
| ATGTGTATGGCATATGATCC+AGG | - | tig0019619:22686-22705 | Msa1375030:intron | 40.0% | |
| TATGGCATATGATCCAGGTA+TGG | - | tig0019619:22691-22710 | Msa1375030:intron | 40.0% | |
| AGAATGACTTAATCCATGCC+TGG | - | tig0019619:23126-23145 | Msa1375030:intron | 40.0% | |
| GAATGACTTAATCCATGCCT+GGG | - | tig0019619:23127-23146 | Msa1375030:intron | 40.0% | |
| AATGACTTAATCCATGCCTG+GGG | - | tig0019619:23128-23147 | Msa1375030:intron | 40.0% | |
| ACAACTTGGTTATTGTGCAC+AGG | - | tig0019619:23160-23179 | Msa1375030:intron | 40.0% | |
| GTGTTATAACACCATGTTCG+TGG | - | tig0019619:23193-23212 | Msa1375030:intron | 40.0% | |
| AGATGAACAACCATACTGGA+AGG | + | tig0019619:23230-23249 | None:intergenic | 40.0% | |
| TGAGAGATGAACAACCATAC+TGG | + | tig0019619:23234-23253 | None:intergenic | 40.0% | |
| AGAATCTACTACATGGTTGC+AGG | - | tig0019619:23700-23719 | Msa1375030:CDS | 40.0% | |
| GCAGTCGTATATTGAAATGC+AGG | - | tig0019619:23730-23749 | Msa1375030:CDS | 40.0% | |
| !! | TGCAGGTTTTTGGGAAAAGA+TGG | - | tig0019619:23747-23766 | Msa1375030:CDS | 40.0% |
| CAGCAAAAAAGGACCAATGT+TGG | - | tig0019619:23777-23796 | Msa1375030:intron | 40.0% | |
| ATTTACACTGACCTTCAGAG+GGG | + | tig0019619:24128-24147 | None:intergenic | 40.0% | |
| CTATTTACACTGACCTTCAG+AGG | + | tig0019619:24130-24149 | None:intergenic | 40.0% | |
| ! | CTCTGAAGGTCAGTGTAAAT+AGG | - | tig0019619:24128-24147 | Msa1375030:CDS | 40.0% |
| GTCAGTGTAAATAGGTCACA+TGG | - | tig0019619:24136-24155 | Msa1375030:CDS | 40.0% | |
| TACTCCTACCTTTCTTCGCT+CGG | - | tig0019619:19436-19455 | Msa1375030:three_prime_UTR | 45.0% | |
| !! | ATGTCAGGGTGTTGTCTTTC+CGG | - | tig0019619:19849-19868 | Msa1375030:CDS | 45.0% |
| !! | GAAGAATGAGGAGTGTCCAA+AGG | + | tig0019619:19894-19913 | None:intergenic | 45.0% |
| TGGCAATGCATTCTCTGCAA+AGG | - | tig0019619:19942-19961 | Msa1375030:intron | 45.0% | |
| TGCCTCAAGGAATTGTTGCT+AGG | - | tig0019619:20250-20269 | Msa1375030:intron | 45.0% | |
| GTCCTAGCAACAATTCCTTG+AGG | + | tig0019619:20255-20274 | None:intergenic | 45.0% | |
| TGTTGCTAGGACCTCTAACT+TGG | - | tig0019619:20263-20282 | Msa1375030:CDS | 45.0% | |
| GGACCTCTAACTTGGAAACA+CGG | - | tig0019619:20271-20290 | Msa1375030:CDS | 45.0% | |
| ACACCAGAGTAGTCCCATAA+GGG | + | tig0019619:20297-20316 | None:intergenic | 45.0% | |
| TACACCAGAGTAGTCCCATA+AGG | + | tig0019619:20298-20317 | None:intergenic | 45.0% | |
| GGTTCGAAATTCTCTGAACC+AGG | + | tig0019619:20582-20601 | None:intergenic | 45.0% | |
| !! | ATGATGGCTTTGTGGATGGA+TGG | - | tig0019619:20791-20810 | Msa1375030:intron | 45.0% |
| TAGGAGTAGATGACCACAGA+GGG | + | tig0019619:20906-20925 | None:intergenic | 45.0% | |
| ATAGGAGTAGATGACCACAG+AGG | + | tig0019619:20907-20926 | None:intergenic | 45.0% | |
| ! | CACAAGTGCCTTACCTTTTC+GGG | + | tig0019619:21067-21086 | None:intergenic | 45.0% |
| ! | GCACAAGTGCCTTACCTTTT+CGG | + | tig0019619:21068-21087 | None:intergenic | 45.0% |
| TTCACTTGCAAAACCAGGTG+TGG | - | tig0019619:21369-21388 | Msa1375030:intron | 45.0% | |
| GGACCTAAAGGTGAAAATGG+TGG | + | tig0019619:21810-21829 | None:intergenic | 45.0% | |
| CCTGCTTTATGAACTGTCAG+TGG | + | tig0019619:21976-21995 | None:intergenic | 45.0% | |
| CCACTGACAGTTCATAAAGC+AGG | - | tig0019619:21973-21992 | Msa1375030:intron | 45.0% | |
| GTTGCTAAACAGCTAGAGGT+GGG | + | tig0019619:22030-22049 | None:intergenic | 45.0% | |
| TGTTGCTAAACAGCTAGAGG+TGG | + | tig0019619:22031-22050 | None:intergenic | 45.0% | |
| !! | GCATTGGTTGGGTCATAACA+AGG | + | tig0019619:22077-22096 | None:intergenic | 45.0% |
| ACTGTTTACCCTAAGCAAGG+AGG | + | tig0019619:22525-22544 | None:intergenic | 45.0% | |
| GCAACTGTTTACCCTAAGCA+AGG | + | tig0019619:22528-22547 | None:intergenic | 45.0% | |
| ATGTACCGCGTTTAGAGACA+AGG | + | tig0019619:23398-23417 | None:intergenic | 45.0% | |
| TGATATGGTGTGTGCGACTT+CGG | + | tig0019619:23913-23932 | None:intergenic | 45.0% | |
| !!! | TCAATTAATTAATTTTATTT+TGG | - | tig0019619:19761-19780 | Msa1375030:three_prime_UTR | 5.0% |
| !!! | CAATTAATTAATTTTATTTT+GGG | - | tig0019619:19762-19781 | Msa1375030:three_prime_UTR | 5.0% |
| !!! | AATTAATTAATTTTATTTTG+GGG | - | tig0019619:19763-19782 | Msa1375030:three_prime_UTR | 5.0% |
| !!! | TTTGTAAAAAATATTTTTTT+TGG | + | tig0019619:22990-23009 | None:intergenic | 5.0% |
| ! | TTTTGCAGAGACTGGCACGA+TGG | - | tig0019619:20048-20067 | Msa1375030:intron | 50.0% |
| TTTGCAGAGACTGGCACGAT+GGG | - | tig0019619:20049-20068 | Msa1375030:intron | 50.0% | |
| !! | GAAGGGCGGCATTGTTTCTA+GGG | + | tig0019619:20216-20235 | None:intergenic | 50.0% |
| ! | AGAAGGGCGGCATTGTTTCT+AGG | + | tig0019619:20217-20236 | None:intergenic | 50.0% |
| TAGAAACAATGCCGCCCTTC+TGG | - | tig0019619:20216-20235 | Msa1375030:intron | 50.0% | |
| GCAATGCCTGAGTTCCAGAA+GGG | + | tig0019619:20233-20252 | None:intergenic | 50.0% | |
| ACTTGGAAACACGGCCCTTA+TGG | - | tig0019619:20280-20299 | Msa1375030:CDS | 50.0% | |
| CTTGGAAACACGGCCCTTAT+GGG | - | tig0019619:20281-20300 | Msa1375030:CDS | 50.0% | |
| !! | TATCTGCTGACTCATACCGC+CGG | - | tig0019619:20725-20744 | Msa1375030:intron | 50.0% |
| TTGCAAAACCAGGTGTGGCA+AGG | - | tig0019619:21374-21393 | Msa1375030:intron | 50.0% | |
| AGAGATATCACAGCCTGCAC+TGG | - | tig0019619:21924-21943 | Msa1375030:intron | 50.0% | |
| GATTTACCAGGATCCAGTGC+AGG | + | tig0019619:21940-21959 | None:intergenic | 50.0% | |
| TTACCCTAAGCAAGGAGGAG+CGG | + | tig0019619:22520-22539 | None:intergenic | 50.0% | |
| CGGGGGATCTAATGGAAATG+AGG | - | tig0019619:23334-23353 | Msa1375030:intron | 50.0% | |
| CTACTACATGGTTGCAGGTG+AGG | - | tig0019619:23705-23724 | Msa1375030:CDS | 50.0% | |
| ! | AGTTTTTGTCGCCCCTCTGA+AGG | - | tig0019619:24114-24133 | Msa1375030:CDS | 50.0% |
| CCTACCTTTCTTCGCTCGGT+CGG | - | tig0019619:19440-19459 | Msa1375030:three_prime_UTR | 55.0% | |
| TTGCAGAGACTGGCACGATG+GGG | - | tig0019619:20050-20069 | Msa1375030:intron | 55.0% | |
| ATGCCTGAGTTCCAGAAGGG+CGG | + | tig0019619:20230-20249 | None:intergenic | 55.0% | |
| GGCAATGCCTGAGTTCCAGA+AGG | + | tig0019619:20234-20253 | None:intergenic | 55.0% | |
| ! | GGAACTCAGGCATTGCCTCA+AGG | - | tig0019619:20237-20256 | Msa1375030:intron | 55.0% |
| GGGCCGTGTTTCCAAGTTAG+AGG | + | tig0019619:20277-20296 | None:intergenic | 55.0% | |
| TAAGCTCGCGGGCTTACAGT+TGG | - | tig0019619:21263-21282 | Msa1375030:intron | 55.0% | |
| GCTAGAGGTGGGAGGAAACA+AGG | + | tig0019619:22019-22038 | None:intergenic | 55.0% | |
| GCTAAACAGCTAGAGGTGGG+AGG | + | tig0019619:22027-22046 | None:intergenic | 55.0% | |
| CTTAATCCATGCCTGGGGAC+TGG | - | tig0019619:23133-23152 | Msa1375030:intron | 55.0% | |
| AAGTTGTCTGTCCAGTCCCC+AGG | + | tig0019619:23147-23166 | None:intergenic | 55.0% | |
| TGGGGACTGGACAGACAACT+TGG | - | tig0019619:23146-23165 | Msa1375030:intron | 55.0% | |
| CCATTAGATCCCCCGAGAGT+GGG | + | tig0019619:23329-23348 | None:intergenic | 55.0% | |
| TCCATTAGATCCCCCGAGAG+TGG | + | tig0019619:23330-23349 | None:intergenic | 55.0% | |
| CCGACCGAGCGAAGAAAGGT+AGG | + | tig0019619:19443-19462 | None:intergenic | 60.0% | |
| CAGACCGACCGAGCGAAGAA+AGG | + | tig0019619:19447-19466 | None:intergenic | 60.0% | |
| !! | ATGCCGCCCTTCTGGAACTC+AGG | - | tig0019619:20224-20243 | Msa1375030:intron | 60.0% |
| CGGCCCTTATGGGACTACTC+TGG | - | tig0019619:20291-20310 | Msa1375030:CDS | 60.0% | |
| CCAGGTGTGGCAAGGAGAGT+CGG | - | tig0019619:21382-21401 | Msa1375030:intron | 60.0% | |
| TCACAGCCTGCACTGGATCC+TGG | - | tig0019619:21931-21950 | Msa1375030:intron | 60.0% | |
| AGCACCGCTCCTCCTTGCTT+AGG | - | tig0019619:22513-22532 | Msa1375030:intron | 60.0% | |
| GCACCGCTCCTCCTTGCTTA+GGG | - | tig0019619:22514-22533 | Msa1375030:intron | 60.0% | |
| CATCTTGGCCTGCCCACTCT+CGG | - | tig0019619:23314-23333 | Msa1375030:intron | 60.0% | |
| ATCTTGGCCTGCCCACTCTC+GGG | - | tig0019619:23315-23334 | Msa1375030:intron | 60.0% | |
| CCCACTCTCGGGGGATCTAA+TGG | - | tig0019619:23326-23345 | Msa1375030:intron | 60.0% | |
| !! | CTGCTGACTCATACCGCCGG+TGG | - | tig0019619:20728-20747 | Msa1375030:intron | 65.0% |
| CACCTGACGGGAACTGCCAC+CGG | + | tig0019619:20747-20766 | None:intergenic | 65.0% | |
| CCGACTCTCCTTGCCACACC+TGG | + | tig0019619:21385-21404 | None:intergenic | 65.0% | |
| GTCTGTCCAGTCCCCAGGCA+TGG | + | tig0019619:23142-23161 | None:intergenic | 65.0% | |
| TCTTGGCCTGCCCACTCTCG+GGG | - | tig0019619:23316-23335 | Msa1375030:intron | 65.0% | |
| TAGATCCCCCGAGAGTGGGC+AGG | + | tig0019619:23325-23344 | None:intergenic | 65.0% | |
| CTGACGGGAACTGCCACCGG+CGG | + | tig0019619:20744-20763 | None:intergenic | 70.0% | |
| CTTGGCCTGCCCACTCTCGG+GGG | - | tig0019619:23317-23336 | Msa1375030:intron | 70.0% | |
| CGCCGGTGGCAGTTCCCGTC+AGG | - | tig0019619:20742-20761 | Msa1375030:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019619 | gene | 19398 | 24235 | 19398 | ID=Msa1375030;Name=Msa1375030 |
| tig0019619 | mRNA | 19398 | 24235 | 19398 | ID=Msa1375030-mRNA-1;Parent=Msa1375030;Name=Msa1375030-mRNA-1;_AED=0.20;_eAED=0.20;_QI=14|0.8|0.72|1|0.9|0.90|11|391|373 |
| tig0019619 | exon | 19398 | 19911 | 19398 | ID=Msa1375030-mRNA-1:exon:4315;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 19996 | 20037 | 19996 | ID=Msa1375030-mRNA-1:exon:4314;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 20257 | 20367 | 20257 | ID=Msa1375030-mRNA-1:exon:4313;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 20452 | 20505 | 20452 | ID=Msa1375030-mRNA-1:exon:4312;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 20926 | 20992 | 20926 | ID=Msa1375030-mRNA-1:exon:4311;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 21098 | 21163 | 21098 | ID=Msa1375030-mRNA-1:exon:4310;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 21623 | 21739 | 21623 | ID=Msa1375030-mRNA-1:exon:4309;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 22561 | 22662 | 22561 | ID=Msa1375030-mRNA-1:exon:4308;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 22761 | 22869 | 22761 | ID=Msa1375030-mRNA-1:exon:4307;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 23654 | 23777 | 23654 | ID=Msa1375030-mRNA-1:exon:4306;Parent=Msa1375030-mRNA-1 |
| tig0019619 | exon | 24015 | 24235 | 24015 | ID=Msa1375030-mRNA-1:exon:4305;Parent=Msa1375030-mRNA-1 |
| tig0019619 | five_prime_UTR | 24222 | 24235 | 24222 | ID=Msa1375030-mRNA-1:five_prime_utr;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 24015 | 24221 | 24015 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 23654 | 23777 | 23654 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 22761 | 22869 | 22761 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 22561 | 22662 | 22561 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 21623 | 21739 | 21623 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 21098 | 21163 | 21098 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 20926 | 20992 | 20926 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 20452 | 20505 | 20452 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 20257 | 20367 | 20257 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 19996 | 20037 | 19996 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | CDS | 19789 | 19911 | 19789 | ID=Msa1375030-mRNA-1:cds;Parent=Msa1375030-mRNA-1 |
| tig0019619 | three_prime_UTR | 19398 | 19788 | 19398 | ID=Msa1375030-mRNA-1:three_prime_utr;Parent=Msa1375030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
