Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270060 | XP_003592883.2 | 97.328 | 262 | 0 | 1 | 112 | 373 | 139 | 393 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270060 | G7IL64 | 97.328 | 262 | 0 | 1 | 112 | 373 | 139 | 393 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0267370 | Msa0270060 | 0.807894 | 4.044907e-50 | -8.615850e-47 |
| Msa0270060 | Msa0274640 | 0.806591 | 7.635166e-50 | -8.615850e-47 |
| Msa0270060 | Msa0314070 | 0.815613 | 8.452007e-52 | -8.615850e-47 |
| Msa0270060 | Msa0363790 | 0.815985 | 6.981944e-52 | -8.615850e-47 |
| Msa0270060 | Msa0380930 | 0.813922 | 2.002695e-51 | -8.615850e-47 |
| Msa0270060 | Msa0455760 | 0.802242 | 6.156975e-49 | -8.615850e-47 |
| Msa0270060 | Msa0486690 | 0.809195 | 2.133762e-50 | -8.615850e-47 |
| Msa0270060 | Msa0614920 | 0.807789 | 4.256769e-50 | -8.615850e-47 |
| Msa0270060 | Msa0661650 | 0.802298 | 5.995078e-49 | -8.615850e-47 |
| Msa0270060 | Msa0790550 | 0.964007 | 8.692144e-123 | -8.615850e-47 |
| Msa0270060 | Msa0936530 | 0.818375 | 2.025564e-52 | -8.615850e-47 |
| Msa0270060 | Msa0964490 | 0.817858 | 2.651298e-52 | -8.615850e-47 |
| Msa0270060 | Msa0965080 | 0.802139 | 6.465727e-49 | -8.615850e-47 |
| Msa0270060 | Msa0965290 | 0.801071 | 1.070627e-48 | -8.615850e-47 |
| Msa0270060 | Msa0973520 | 0.807562 | 4.758208e-50 | -8.615850e-47 |
| Msa0270060 | Msa0992680 | 0.802385 | 5.752529e-49 | -8.615850e-47 |
| Msa0270060 | Msa0999680 | 0.805424 | 1.343861e-49 | -8.615850e-47 |
| Msa0270060 | Msa1162780 | 0.803722 | 3.043356e-49 | -8.615850e-47 |
| Msa0270060 | Msa1163090 | 0.810421 | 1.162577e-50 | -8.615850e-47 |
| Msa0270060 | Msa1201200 | 0.810675 | 1.024495e-50 | -8.615850e-47 |
| Msa0270060 | Msa1278660 | 0.813826 | 2.102328e-51 | -8.615850e-47 |
| Msa0270060 | Msa1375030 | 0.941510 | 3.665349e-101 | -8.615850e-47 |
| Msa0270060 | Msa1392300 | 0.961963 | 2.578869e-120 | -8.615850e-47 |
| Msa0270060 | Msa1394380 | 0.805265 | 1.450834e-49 | -8.615850e-47 |
| Msa0270060 | Msa1440560 | 0.818508 | 1.889778e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270060 | MtrunA17_Chr2g0276851 | 97.328 | 262 | 0 | 1 | 112 | 373 | 139 | 393 | 0.0 | 540 |
| Msa0270060 | MtrunA17_Chr2g0276851 | 97.917 | 48 | 1 | 0 | 62 | 109 | 1 | 48 | 6.27e-14 | 72.4 |
| Msa0270060 | MtrunA17_Chr1g0189401 | 61.811 | 254 | 92 | 2 | 112 | 364 | 142 | 391 | 3.89e-117 | 345 |
| Msa0270060 | MtrunA17_Chr2g0281421 | 58.366 | 257 | 105 | 1 | 112 | 366 | 138 | 394 | 1.24e-111 | 332 |
| Msa0270060 | MtrunA17_Chr4g0047961 | 51.389 | 288 | 134 | 2 | 77 | 364 | 83 | 364 | 3.26e-107 | 319 |
| Msa0270060 | MtrunA17_Chr7g0227041 | 46.914 | 243 | 112 | 4 | 112 | 354 | 164 | 389 | 7.53e-71 | 227 |
| Msa0270060 | MtrunA17_Chr3g0123571 | 46.473 | 241 | 123 | 5 | 88 | 328 | 135 | 369 | 3.11e-69 | 223 |
| Msa0270060 | MtrunA17_Chr8g0381611 | 52.821 | 195 | 87 | 4 | 112 | 306 | 149 | 338 | 7.74e-68 | 219 |
| Msa0270060 | MtrunA17_Chr8g0381601 | 47.005 | 217 | 110 | 4 | 112 | 328 | 157 | 368 | 3.36e-66 | 214 |
| Msa0270060 | MtrunA17_Chr4g0028891 | 44.856 | 243 | 116 | 6 | 112 | 354 | 178 | 402 | 3.80e-63 | 207 |
| Msa0270060 | MtrunA17_Chr2g0326801 | 43.443 | 244 | 120 | 6 | 112 | 355 | 154 | 379 | 4.03e-62 | 204 |
| Msa0270060 | MtrunA17_Chr3g0095271 | 44.872 | 78 | 20 | 2 | 187 | 263 | 6 | 61 | 3.71e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270060 | AT4G18530.3 | 68.359 | 256 | 77 | 1 | 112 | 363 | 129 | 384 | 8.45e-133 | 385 |
| Msa0270060 | AT4G18530.1 | 68.359 | 256 | 77 | 1 | 112 | 363 | 134 | 389 | 9.57e-133 | 385 |
| Msa0270060 | AT4G12840.3 | 61.538 | 260 | 93 | 1 | 112 | 364 | 41 | 300 | 5.86e-123 | 357 |
| Msa0270060 | AT4G12840.2 | 61.538 | 260 | 93 | 1 | 112 | 364 | 135 | 394 | 8.74e-123 | 360 |
| Msa0270060 | AT4G12840.1 | 61.538 | 260 | 93 | 1 | 112 | 364 | 135 | 394 | 1.15e-122 | 360 |
| Msa0270060 | AT1G11170.1 | 53.261 | 276 | 128 | 1 | 88 | 362 | 119 | 394 | 1.02e-103 | 313 |
| Msa0270060 | AT1G11170.6 | 53.261 | 276 | 128 | 1 | 88 | 362 | 119 | 394 | 1.02e-103 | 313 |
| Msa0270060 | AT1G11170.5 | 53.261 | 276 | 128 | 1 | 88 | 362 | 119 | 394 | 1.02e-103 | 313 |
| Msa0270060 | AT1G11170.7 | 53.261 | 276 | 128 | 1 | 88 | 362 | 119 | 394 | 1.02e-103 | 313 |
| Msa0270060 | AT4G18530.2 | 77.778 | 171 | 38 | 0 | 112 | 282 | 134 | 304 | 2.27e-100 | 300 |
| Msa0270060 | AT1G61240.8 | 54.331 | 254 | 112 | 2 | 111 | 361 | 72 | 324 | 1.19e-99 | 300 |
| Msa0270060 | AT1G61240.4 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.32e-99 | 300 |
| Msa0270060 | AT1G61240.5 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.32e-99 | 300 |
| Msa0270060 | AT1G61240.6 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.32e-99 | 300 |
| Msa0270060 | AT1G61240.2 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.32e-99 | 300 |
| Msa0270060 | AT1G61240.1 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.32e-99 | 300 |
| Msa0270060 | AT1G61240.3 | 54.331 | 254 | 112 | 2 | 111 | 361 | 139 | 391 | 4.32e-99 | 300 |
| Msa0270060 | AT1G11170.4 | 58.824 | 221 | 91 | 0 | 88 | 308 | 119 | 339 | 3.01e-94 | 285 |
| Msa0270060 | AT1G11170.8 | 58.824 | 221 | 91 | 0 | 88 | 308 | 119 | 339 | 3.01e-94 | 285 |
| Msa0270060 | AT1G11170.3 | 58.824 | 221 | 91 | 0 | 88 | 308 | 119 | 339 | 3.05e-94 | 286 |
| Msa0270060 | AT1G61240.7 | 54.894 | 235 | 93 | 1 | 111 | 345 | 139 | 360 | 7.09e-92 | 280 |
| Msa0270060 | AT1G11170.2 | 56.923 | 195 | 84 | 0 | 88 | 282 | 119 | 313 | 1.11e-78 | 245 |
| Msa0270060 | AT3G27470.2 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 3.19e-70 | 225 |
| Msa0270060 | AT3G27470.1 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 3.19e-70 | 225 |
| Msa0270060 | AT3G27470.4 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 3.19e-70 | 225 |
| Msa0270060 | AT3G27470.3 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 3.19e-70 | 225 |
| Msa0270060 | AT3G26440.1 | 46.721 | 244 | 112 | 5 | 112 | 355 | 156 | 381 | 4.90e-70 | 225 |
| Msa0270060 | AT3G26440.2 | 46.721 | 244 | 112 | 5 | 112 | 355 | 156 | 381 | 4.90e-70 | 225 |
| Msa0270060 | AT3G27470.5 | 47.737 | 243 | 109 | 5 | 112 | 354 | 157 | 381 | 5.74e-70 | 225 |
| Msa0270060 | AT3G26440.4 | 46.721 | 244 | 112 | 5 | 112 | 355 | 132 | 357 | 6.22e-70 | 224 |
| Msa0270060 | AT3G26440.5 | 46.721 | 244 | 112 | 5 | 112 | 355 | 179 | 404 | 6.88e-70 | 225 |
| Msa0270060 | AT3G26440.3 | 50.233 | 215 | 102 | 4 | 112 | 326 | 156 | 365 | 7.35e-70 | 224 |
| Msa0270060 | AT3G26440.6 | 46.721 | 244 | 112 | 5 | 112 | 355 | 179 | 404 | 8.16e-70 | 225 |
| Msa0270060 | AT1G13000.2 | 52.941 | 204 | 89 | 5 | 112 | 315 | 165 | 361 | 1.44e-69 | 224 |
| Msa0270060 | AT1G13000.5 | 52.941 | 204 | 89 | 5 | 112 | 315 | 165 | 361 | 1.44e-69 | 224 |
| Msa0270060 | AT1G13000.4 | 52.941 | 204 | 89 | 5 | 112 | 315 | 165 | 361 | 1.44e-69 | 224 |
| Msa0270060 | AT1G13000.1 | 52.941 | 204 | 89 | 5 | 112 | 315 | 165 | 361 | 1.44e-69 | 224 |
| Msa0270060 | AT1G08040.3 | 46.288 | 229 | 118 | 4 | 100 | 328 | 132 | 355 | 2.06e-66 | 215 |
| Msa0270060 | AT1G08040.2 | 46.288 | 229 | 118 | 4 | 100 | 328 | 136 | 359 | 3.01e-66 | 214 |
| Msa0270060 | AT1G08040.4 | 46.288 | 229 | 118 | 4 | 100 | 328 | 136 | 359 | 3.01e-66 | 214 |
| Msa0270060 | AT1G08040.1 | 46.288 | 229 | 118 | 4 | 100 | 328 | 136 | 359 | 3.01e-66 | 214 |
| Msa0270060 | AT1G24570.1 | 43.019 | 265 | 128 | 6 | 112 | 373 | 137 | 381 | 1.64e-65 | 213 |
| Msa0270060 | AT1G24570.2 | 43.019 | 265 | 128 | 6 | 112 | 373 | 144 | 388 | 2.53e-65 | 213 |
| Msa0270060 | AT2G28310.2 | 44.262 | 244 | 118 | 5 | 112 | 355 | 141 | 366 | 2.90e-65 | 212 |
| Msa0270060 | AT2G28310.1 | 44.262 | 244 | 118 | 5 | 112 | 355 | 141 | 366 | 2.90e-65 | 212 |
| Msa0270060 | AT2G28310.3 | 44.262 | 244 | 118 | 5 | 112 | 355 | 141 | 366 | 2.90e-65 | 212 |
| Msa0270060 | AT1G67850.4 | 50.490 | 204 | 94 | 5 | 112 | 315 | 145 | 341 | 6.90e-65 | 211 |
| Msa0270060 | AT1G67850.6 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.06e-64 | 211 |
| Msa0270060 | AT1G67850.7 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.06e-64 | 211 |
| Msa0270060 | AT1G67850.1 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.06e-64 | 211 |
| Msa0270060 | AT1G67850.3 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.06e-64 | 211 |
| Msa0270060 | AT1G67850.2 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.06e-64 | 211 |
| Msa0270060 | AT1G67850.5 | 50.490 | 204 | 94 | 5 | 112 | 315 | 161 | 357 | 1.06e-64 | 211 |
| Msa0270060 | AT1G13000.3 | 54.386 | 171 | 74 | 3 | 112 | 282 | 165 | 331 | 4.07e-62 | 202 |
| Msa0270060 | AT1G11170.9 | 55.639 | 133 | 59 | 0 | 88 | 220 | 119 | 251 | 5.04e-46 | 158 |
| Msa0270060 | AT2G25905.1 | 61.111 | 90 | 34 | 1 | 112 | 200 | 138 | 227 | 1.88e-32 | 122 |
Find 86 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGTACACCAATATTTA+AGG | 0.153790 | 2_3:-1351090 | None:intergenic |
| GTCTATCACTATCATCTCTA+TGG | 0.225660 | 2_3:-1350659 | None:intergenic |
| ATATTATCAAATGTTATTAT+TGG | 0.228523 | 2_3:+1351213 | Msa0270060:three_prime_UTR |
| TTGTCTTCTTCACTCAGTTC+TGG | 0.252519 | 2_3:+1346604 | Msa0270060:CDS |
| AGAAGGTATTATAAGTTTAA+AGG | 0.258399 | 2_3:+1349517 | Msa0270060:intron |
| TATTATCAAATGTTATTATT+GGG | 0.278405 | 2_3:+1351214 | Msa0270060:three_prime_UTR |
| ATGTCAGGGTGTTGTCTTTC+CGG | 0.282197 | 2_3:+1346898 | Msa0270060:intron |
| TCATTCATTCCCTTAAATAT+TGG | 0.290186 | 2_3:+1351080 | Msa0270060:three_prime_UTR |
| AATAACATTTGATAATATTT+CGG | 0.296138 | 2_3:-1351208 | None:intergenic |
| TCATTCATCAAAATATGATA+TGG | 0.328431 | 2_3:-1350974 | None:intergenic |
| ATCTTGGCCTGCCCACTCTC+GGG | 0.330732 | 2_3:+1350364 | Msa0270060:CDS |
| GAAGAAAGGTAGGAGTATAT+TGG | 0.332630 | 2_3:-1346479 | None:intergenic |
| AAGGGAAAAGAATAAGAATA+AGG | 0.339192 | 2_3:-1346542 | None:intergenic |
| TTTGCCTGTTGTTGTTCATA+TGG | 0.345241 | 2_3:-1350855 | None:intergenic |
| CAAAATCCAAGTTCATTTCA+TGG | 0.350109 | 2_3:+1350919 | Msa0270060:three_prime_UTR |
| CATCTTGGCCTGCCCACTCT+CGG | 0.356953 | 2_3:+1350363 | Msa0270060:CDS |
| TTAAATATTGGTGTACATAA+AGG | 0.362990 | 2_3:+1351092 | Msa0270060:three_prime_UTR |
| ACTACAATTATATATTTCTC+TGG | 0.371844 | 2_3:+1348061 | Msa0270060:CDS |
| GGTGGTATAGATGTGTTAAT+AGG | 0.380200 | 2_3:+1351113 | Msa0270060:three_prime_UTR |
| TTATCTATTGTTAAAGAAGA+AGG | 0.390831 | 2_3:+1348947 | Msa0270060:CDS |
| TATTATAAGTTTAAAGGTAG+TGG | 0.396361 | 2_3:+1349523 | Msa0270060:CDS |
| ATTCTTCTTTCCTTGATTTG+CGG | 0.396540 | 2_3:+1346956 | Msa0270060:CDS |
| TTATGTACACCAATATTTAA+GGG | 0.409372 | 2_3:-1351089 | None:intergenic |
| TTGTAGTCAGCAACTATGTC+TGG | 0.429649 | 2_3:-1348045 | None:intergenic |
| CTGCTATAAATCAAACGAAA+TGG | 0.446330 | 2_3:+1347900 | Msa0270060:CDS |
| AGCACCGCTCCTCCTTGCTT+AGG | 0.450748 | 2_3:+1349562 | Msa0270060:CDS |
| TGAATGACTGAAATCACAAA+AGG | 0.455900 | 2_3:-1351064 | None:intergenic |
| CTCTGAAGGTCAGTGTAAAT+AGG | 0.456682 | 2_3:+1351177 | Msa0270060:three_prime_UTR |
| CATTATGATGGCTTTGTGGA+TGG | 0.458349 | 2_3:+1347836 | Msa0270060:CDS |
| AGAAGAAGAATGATTGGAAA+GGG | 0.461998 | 2_3:-1346560 | None:intergenic |
| TACTCCTACCTTTCTTCGCT+CGG | 0.462317 | 2_3:+1346485 | Msa0270060:CDS |
| TGATCCATATGAACAACAAC+AGG | 0.469510 | 2_3:+1350851 | Msa0270060:CDS |
| CTTAATCCATGCCTGGGGAC+TGG | 0.471837 | 2_3:+1350182 | Msa0270060:CDS |
| TCTGAGTACATAGTTCATCT+TGG | 0.472659 | 2_3:+1350348 | Msa0270060:CDS |
| TCTTGGCCTGCCCACTCTCG+GGG | 0.475856 | 2_3:+1350365 | Msa0270060:CDS |
| TATCTATTGTTAAAGAAGAA+GGG | 0.479300 | 2_3:+1348948 | Msa0270060:CDS |
| ATTTATAGCAGACACATGTA+TGG | 0.483134 | 2_3:-1347888 | None:intergenic |
| TCACAGCCTGCACTGGATCC+TGG | 0.484940 | 2_3:+1348980 | Msa0270060:CDS |
| AGAATGACTTAATCCATGCC+TGG | 0.487002 | 2_3:+1350175 | Msa0270060:intron |
| AAAATAAGCGCCGCAAATCA+AGG | 0.491462 | 2_3:-1346966 | None:intergenic |
| GCACCGCTCCTCCTTGCTTA+GGG | 0.492013 | 2_3:+1349563 | Msa0270060:CDS |
| TGTTGACCATGAAATGAACT+TGG | 0.495379 | 2_3:-1350925 | None:intergenic |
| AGAGATATCACAGCCTGCAC+TGG | 0.500200 | 2_3:+1348973 | Msa0270060:CDS |
| GTCTGTCCAGTCCCCAGGCA+TGG | 0.503621 | 2_3:-1350188 | None:intergenic |
| CAGACCGACCGAGCGAAGAA+AGG | 0.514238 | 2_3:-1346493 | None:intergenic |
| CTATTTACACTGACCTTCAG+AGG | 0.515012 | 2_3:-1351176 | None:intergenic |
| AAGAAGAAGAATGATTGGAA+AGG | 0.520676 | 2_3:-1346561 | None:intergenic |
| TGATGTATTTCTGATTTACC+AGG | 0.521088 | 2_3:-1348998 | None:intergenic |
| TTATATATTTCTCTGGGATG+AGG | 0.522681 | 2_3:+1348068 | Msa0270060:CDS |
| ATGGATGGAAGAATTTAGCT+TGG | 0.524891 | 2_3:+1347855 | Msa0270060:CDS |
| GCAGTCGTATATTGAAATGC+AGG | 0.528288 | 2_3:+1350779 | Msa0270060:CDS |
| TGGGGACTGGACAGACAACT+TGG | 0.530926 | 2_3:+1350195 | Msa0270060:CDS |
| TCTATCACTATCATCTCTAT+GGG | 0.531315 | 2_3:-1350658 | None:intergenic |
| AAGTTGTCTGTCCAGTCCCC+AGG | 0.535291 | 2_3:-1350193 | None:intergenic |
| GAATGACTTAATCCATGCCT+GGG | 0.537430 | 2_3:+1350176 | Msa0270060:intron |
| ATGTGTATGGCATATGATCC+AGG | 0.543942 | 2_3:+1349735 | Msa0270060:CDS |
| GATTTACCAGGATCCAGTGC+AGG | 0.550120 | 2_3:-1348986 | None:intergenic |
| CTACAATTATATATTTCTCT+GGG | 0.550211 | 2_3:+1348062 | Msa0270060:CDS |
| TGGCAATGCATTCTCTGCAA+AGG | 0.554079 | 2_3:+1346991 | Msa0270060:CDS |
| GGTCAAAATTATCGACAAGA+AGG | 0.554786 | 2_3:-1348092 | None:intergenic |
| CCGACCGAGCGAAGAAAGGT+AGG | 0.562740 | 2_3:-1346489 | None:intergenic |
| ACAACTTGGTTATTGTGCAC+AGG | 0.563090 | 2_3:+1350209 | Msa0270060:CDS |
| TGATATGGTGTGTGCGACTT+CGG | 0.566073 | 2_3:-1350959 | None:intergenic |
| GGTATAGATGTGTTAATAGG+AGG | 0.566147 | 2_3:+1351116 | Msa0270060:three_prime_UTR |
| CCACTGACAGTTCATAAAGC+AGG | 0.566749 | 2_3:+1349022 | Msa0270060:CDS |
| TTACAGATGGGTGGAAATGA+TGG | 0.567117 | 2_3:+1349684 | Msa0270060:intron |
| CCTACCTTTCTTCGCTCGGT+CGG | 0.567657 | 2_3:+1346489 | Msa0270060:CDS |
| ATGATGGCTTTGTGGATGGA+TGG | 0.570009 | 2_3:+1347840 | Msa0270060:CDS |
| GAATGACTGAAATCACAAAA+GGG | 0.572973 | 2_3:-1351063 | None:intergenic |
| ATAAGTTTAAAGGTAGTGGA+AGG | 0.575466 | 2_3:+1349527 | Msa0270060:CDS |
| CATATGGATCAATCCAACAT+TGG | 0.600150 | 2_3:-1350839 | None:intergenic |
| TATTTACACTGACCTTCAGA+GGG | 0.603413 | 2_3:-1351175 | None:intergenic |
| GAAGAATGAGGAGTGTCCAA+AGG | 0.608039 | 2_3:-1346940 | None:intergenic |
| AATATTGGTGTACATAAAGG+TGG | 0.609781 | 2_3:+1351095 | Msa0270060:three_prime_UTR |
| GTCAGTGTAAATAGGTCACA+TGG | 0.622001 | 2_3:+1351185 | Msa0270060:three_prime_UTR |
| GCAACTGTTTACCCTAAGCA+AGG | 0.637068 | 2_3:-1349574 | None:intergenic |
| CCTGCTTTATGAACTGTCAG+TGG | 0.637785 | 2_3:-1349022 | None:intergenic |
| AAATCAAGGAAAGAAGAATG+AGG | 0.639950 | 2_3:-1346952 | None:intergenic |
| CTTGGCCTGCCCACTCTCGG+GGG | 0.641965 | 2_3:+1350366 | Msa0270060:CDS |
| TAACTTGTATTACAGATGGG+TGG | 0.651700 | 2_3:+1349675 | Msa0270060:intron |
| AAGCAGGATCAAAAGTACAC+AGG | 0.658718 | 2_3:+1349038 | Msa0270060:CDS |
| TTACCCTAAGCAAGGAGGAG+CGG | 0.668467 | 2_3:-1349566 | None:intergenic |
| TGAGTGAAGAAGACAAGACA+AGG | 0.671986 | 2_3:-1346597 | None:intergenic |
| AATGACTTAATCCATGCCTG+GGG | 0.719521 | 2_3:+1350177 | Msa0270060:CDS |
| ACTGTTTACCCTAAGCAAGG+AGG | 0.728598 | 2_3:-1349571 | None:intergenic |
| ATTTACACTGACCTTCAGAG+GGG | 0.761829 | 2_3:-1351174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAACATTTGATAATATTT+CGG | - | chr2_3:1351211-1351230 | None:intergenic | 10.0% |
| !! | ATATTATCAAATGTTATTAT+TGG | + | chr2_3:1351213-1351232 | Msa0270060:three_prime_UTR | 10.0% |
| !! | TATTATCAAATGTTATTATT+GGG | + | chr2_3:1351214-1351233 | Msa0270060:three_prime_UTR | 10.0% |
| !! | TGTTTAATATTTACAGATAT+AGG | - | chr2_3:1347974-1347993 | None:intergenic | 15.0% |
| !!! | TAATTTATCTTAATTTTCAC+TGG | - | chr2_3:1349797-1349816 | None:intergenic | 15.0% |
| !!! | AGAATTTTTTTGACATTTTT+TGG | + | chr2_3:1349881-1349900 | Msa0270060:intron | 15.0% |
| !!! | ATCACTTTTTTAGTTAAATT+TGG | + | chr2_3:1350528-1350547 | Msa0270060:intron | 15.0% |
| !!! | TAGATTCTTTGTTTATTAAA+GGG | - | chr2_3:1350737-1350756 | None:intergenic | 15.0% |
| !! | GTAGAACTAGAATATAATTA+AGG | - | chr2_3:1346751-1346770 | None:intergenic | 20.0% |
| !! | GGAAGTAATTAGAAATAAAA+TGG | - | chr2_3:1347206-1347225 | None:intergenic | 20.0% |
| !! | AAATTTGAGCTTAACATTAA+CGG | - | chr2_3:1347416-1347435 | None:intergenic | 20.0% |
| !!! | AGCTTTTTGTCTATAAATTA+GGG | + | chr2_3:1347551-1347570 | Msa0270060:intron | 20.0% |
| !! | ACTACAATTATATATTTCTC+TGG | + | chr2_3:1348061-1348080 | Msa0270060:CDS | 20.0% |
| !! | CTACAATTATATATTTCTCT+GGG | + | chr2_3:1348062-1348081 | Msa0270060:CDS | 20.0% |
| !! | AAATTCAATTTATCCATCAA+TGG | - | chr2_3:1348286-1348305 | None:intergenic | 20.0% |
| !! | TATTAAGTAAATTAGTCACT+AGG | + | chr2_3:1348642-1348661 | Msa0270060:intron | 20.0% |
| !!! | TATTGTCTTTTCTATTTTTC+TGG | + | chr2_3:1348816-1348835 | Msa0270060:intron | 20.0% |
| !! | AAATCAACAAATCAAAACAT+GGG | - | chr2_3:1348914-1348933 | None:intergenic | 20.0% |
| !! | AAAATCAACAAATCAAAACA+TGG | - | chr2_3:1348915-1348934 | None:intergenic | 20.0% |
| !! | TTATCTATTGTTAAAGAAGA+AGG | + | chr2_3:1348947-1348966 | Msa0270060:CDS | 20.0% |
| !! | TATCTATTGTTAAAGAAGAA+GGG | + | chr2_3:1348948-1348967 | Msa0270060:CDS | 20.0% |
| !! | TCGAGAGATAAATTATTTAA+GGG | - | chr2_3:1349387-1349406 | None:intergenic | 20.0% |
| !!! | AGAAGGTATTATAAGTTTAA+AGG | + | chr2_3:1349517-1349536 | Msa0270060:intron | 20.0% |
| !! | TATTATAAGTTTAAAGGTAG+TGG | + | chr2_3:1349523-1349542 | Msa0270060:CDS | 20.0% |
| !! | TAACATCACAAATGATATAA+CGG | - | chr2_3:1349628-1349647 | None:intergenic | 20.0% |
| !!! | ATTTTTTGGTTATTCAAGTA+AGG | + | chr2_3:1349895-1349914 | Msa0270060:intron | 20.0% |
| !! | ACAATTAACATTATGTACAT+TGG | + | chr2_3:1349924-1349943 | Msa0270060:intron | 20.0% |
| !! | TTATATTTAGTAACAGACAA+TGG | - | chr2_3:1349956-1349975 | None:intergenic | 20.0% |
| !!! | ACTAAATATAAAGCTCATTT+TGG | + | chr2_3:1349965-1349984 | Msa0270060:intron | 20.0% |
| !!! | CTAAATATAAAGCTCATTTT+GGG | + | chr2_3:1349966-1349985 | Msa0270060:intron | 20.0% |
| !!! | TAAATATAAAGCTCATTTTG+GGG | + | chr2_3:1349967-1349986 | Msa0270060:intron | 20.0% |
| !!! | ATCTTTTTGTAATTTGAGAT+GGG | - | chr2_3:1350016-1350035 | None:intergenic | 20.0% |
| !!! | AAATTTACTTGTGTTTTAAG+TGG | + | chr2_3:1350580-1350599 | Msa0270060:intron | 20.0% |
| !!! | TTAACAAAGCTTTTGTATAT+TGG | + | chr2_3:1350615-1350634 | Msa0270060:intron | 20.0% |
| !!! | GTAGATTCTTTGTTTATTAA+AGG | - | chr2_3:1350738-1350757 | None:intergenic | 20.0% |
| !! | TCATTCATCAAAATATGATA+TGG | - | chr2_3:1350977-1350996 | None:intergenic | 20.0% |
| !! | TTATGTACACCAATATTTAA+GGG | - | chr2_3:1351092-1351111 | None:intergenic | 20.0% |
| !! | TTTATGTACACCAATATTTA+AGG | - | chr2_3:1351093-1351112 | None:intergenic | 20.0% |
| !! | TTAAATATTGGTGTACATAA+AGG | + | chr2_3:1351092-1351111 | Msa0270060:three_prime_UTR | 20.0% |
| ! | AAGGGAAAAGAATAAGAATA+AGG | - | chr2_3:1346545-1346564 | None:intergenic | 25.0% |
| !!! | ATGCAAGGTTTGTTATATTT+GGG | + | chr2_3:1347167-1347186 | Msa0270060:intron | 25.0% |
| !! | CAGCTTTTTGTCTATAAATT+AGG | + | chr2_3:1347550-1347569 | Msa0270060:intron | 25.0% |
| ! | ATGTCATCAATTGAAAAAAG+AGG | - | chr2_3:1347605-1347624 | None:intergenic | 25.0% |
| ! | AAATAGCCAACAAATTCAAT+GGG | - | chr2_3:1347655-1347674 | None:intergenic | 25.0% |
| !! | TGTTGATAAAATCGTCAAAA+AGG | + | chr2_3:1347700-1347719 | Msa0270060:intron | 25.0% |
| ! | ACATATAACATGAACTAATG+CGG | + | chr2_3:1348221-1348240 | Msa0270060:intron | 25.0% |
| ! | TTATAGTTATGTTATGTGCA+AGG | - | chr2_3:1348345-1348364 | None:intergenic | 25.0% |
| ! | TAACATAACTATAAACCCTA+TGG | + | chr2_3:1348351-1348370 | Msa0270060:intron | 25.0% |
| ! | AACATAACTATAAACCCTAT+GGG | + | chr2_3:1348352-1348371 | Msa0270060:intron | 25.0% |
| !! | AATTCTTTGTTTCAGATTGT+TGG | + | chr2_3:1348507-1348526 | Msa0270060:intron | 25.0% |
| ! | CATACACTACAAATATATAG+AGG | - | chr2_3:1348741-1348760 | None:intergenic | 25.0% |
| ! | AATCAACAAATCAAAACATG+GGG | - | chr2_3:1348913-1348932 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTGTTGATTTTC+TGG | + | chr2_3:1348916-1348935 | Msa0270060:intron | 25.0% |
| ! | ATATAACTTGAAAACTGACA+AGG | - | chr2_3:1349184-1349203 | None:intergenic | 25.0% |
| ! | AATATATGTACACAGTCTAA+CGG | + | chr2_3:1349209-1349228 | Msa0270060:intron | 25.0% |
| ! | GTCGAGAGATAAATTATTTA+AGG | - | chr2_3:1349388-1349407 | None:intergenic | 25.0% |
| ! | AGTTAAAAAGAAAATCACAC+AGG | - | chr2_3:1349605-1349624 | None:intergenic | 25.0% |
| !! | TAAGTAACTTGTATTACAGA+TGG | + | chr2_3:1349671-1349690 | Msa0270060:intron | 25.0% |
| !! | AAGTAACTTGTATTACAGAT+GGG | + | chr2_3:1349672-1349691 | Msa0270060:intron | 25.0% |
| !!! | CAAGATTTTTTAGAAAACAC+TGG | - | chr2_3:1349712-1349731 | None:intergenic | 25.0% |
| !!! | CAGTGTTTTCTAAAAAATCT+TGG | + | chr2_3:1349710-1349729 | Msa0270060:CDS | 25.0% |
| !! | GATCTTTTTGTAATTTGAGA+TGG | - | chr2_3:1350017-1350036 | None:intergenic | 25.0% |
| ! | TTCTTGCAAGTTAAAACAAA+AGG | + | chr2_3:1350086-1350105 | Msa0270060:intron | 25.0% |
| ! | ATCATAAGCATACTTACTTT+AGG | - | chr2_3:1350684-1350703 | None:intergenic | 25.0% |
| ! | TAAACAAAGAATCTACTACA+TGG | + | chr2_3:1350742-1350761 | Msa0270060:intron | 25.0% |
| !! | TATATTGAAATGCAGGTTTT+TGG | + | chr2_3:1350786-1350805 | Msa0270060:CDS | 25.0% |
| !! | ATATTGAAATGCAGGTTTTT+GGG | + | chr2_3:1350787-1350806 | Msa0270060:CDS | 25.0% |
| !! | TGATGTTTCAATGATTTTAC+AGG | + | chr2_3:1351027-1351046 | Msa0270060:three_prime_UTR | 25.0% |
| ! | TCATTCATTCCCTTAAATAT+TGG | + | chr2_3:1351080-1351099 | Msa0270060:three_prime_UTR | 25.0% |
| AGAAGAAGAATGATTGGAAA+GGG | - | chr2_3:1346563-1346582 | None:intergenic | 30.0% | |
| AAGAAGAAGAATGATTGGAA+AGG | - | chr2_3:1346564-1346583 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAATGAT+TGG | - | chr2_3:1346569-1346588 | None:intergenic | 30.0% | |
| ATCTGAGAAGAAAGAACTTA+CGG | - | chr2_3:1346669-1346688 | None:intergenic | 30.0% | |
| CTTCTCAGATCATCATTATT+TGG | + | chr2_3:1346679-1346698 | Msa0270060:intron | 30.0% | |
| !!! | AACAACCTATTTTTTGGATC+CGG | - | chr2_3:1346920-1346939 | None:intergenic | 30.0% |
| !!! | CAAAGGAACAACCTATTTTT+TGG | - | chr2_3:1346926-1346945 | None:intergenic | 30.0% |
| CAAAAAATAGGTTGTTCCTT+TGG | + | chr2_3:1346924-1346943 | Msa0270060:CDS | 30.0% | |
| AAATCAAGGAAAGAAGAATG+AGG | - | chr2_3:1346955-1346974 | None:intergenic | 30.0% | |
| ! | ATTCTTCTTTCCTTGATTTG+CGG | + | chr2_3:1346956-1346975 | Msa0270060:CDS | 30.0% |
| TAATTGGATGTTGTTGTATC+CGG | - | chr2_3:1347141-1347160 | None:intergenic | 30.0% | |
| ATCCAATTATAATGCATGCA+AGG | + | chr2_3:1347152-1347171 | Msa0270060:intron | 30.0% | |
| AACCTTGCATGCATTATAAT+TGG | - | chr2_3:1347157-1347176 | None:intergenic | 30.0% | |
| !! | CATGCAAGGTTTGTTATATT+TGG | + | chr2_3:1347166-1347185 | Msa0270060:intron | 30.0% |
| !! | TGCAAGGTTTGTTATATTTG+GGG | + | chr2_3:1347168-1347187 | Msa0270060:intron | 30.0% |
| ! | GTTTCTAGGGAAATAAAAAG+AGG | - | chr2_3:1347252-1347271 | None:intergenic | 30.0% |
| ! | ATCAAGTATTTGTTTCTCCT+TGG | + | chr2_3:1347450-1347469 | Msa0270060:intron | 30.0% |
| GAAATAGCCAACAAATTCAA+TGG | - | chr2_3:1347656-1347675 | None:intergenic | 30.0% | |
| !! | AATTTGTTGGCTATTTCAGT+AGG | + | chr2_3:1347659-1347678 | Msa0270060:intron | 30.0% |
| !!! | GTGATGCTTTTTCATTATGA+TGG | + | chr2_3:1347824-1347843 | Msa0270060:CDS | 30.0% |
| !! | TTTTCATTATGATGGCTTTG+TGG | + | chr2_3:1347832-1347851 | Msa0270060:CDS | 30.0% |
| ATTTATAGCAGACACATGTA+TGG | - | chr2_3:1347891-1347910 | None:intergenic | 30.0% | |
| CTGCTATAAATCAAACGAAA+TGG | + | chr2_3:1347900-1347919 | Msa0270060:CDS | 30.0% | |
| AATTCTCTCTATCATGACAT+AGG | + | chr2_3:1347998-1348017 | Msa0270060:intron | 30.0% | |
| !! | TTATATATTTCTCTGGGATG+AGG | + | chr2_3:1348068-1348087 | Msa0270060:CDS | 30.0% |
| AATTTATCCATCAATGGTGT+TGG | - | chr2_3:1348280-1348299 | None:intergenic | 30.0% | |
| !!! | TTTTCGAGTTGGTAACATTT+TGG | + | chr2_3:1348381-1348400 | Msa0270060:intron | 30.0% |
| GCAAGTGAAAATTACAATGT+CGG | - | chr2_3:1348407-1348426 | None:intergenic | 30.0% | |
| ! | TAATTTTCACTTGCAAAACC+AGG | + | chr2_3:1348413-1348432 | Msa0270060:intron | 30.0% |
| TTTGTTTCAGATTGTTGGAA+TGG | + | chr2_3:1348512-1348531 | Msa0270060:intron | 30.0% | |
| TCATCATCTGTGTAGAAAAA+AGG | - | chr2_3:1348880-1348899 | None:intergenic | 30.0% | |
| !!! | GATTTGTTGATTTTCTGGTT+AGG | + | chr2_3:1348921-1348940 | Msa0270060:intron | 30.0% |
| ! | TGATGTATTTCTGATTTACC+AGG | - | chr2_3:1349001-1349020 | None:intergenic | 30.0% |
| !! | TCATTAATAGAGTACTGCAT+TGG | - | chr2_3:1349142-1349161 | None:intergenic | 30.0% |
| !! | ATAAGTTTAAAGGTAGTGGA+AGG | + | chr2_3:1349527-1349546 | Msa0270060:CDS | 30.0% |
| AAAAATCTTGGCAATGTGTA+TGG | + | chr2_3:1349722-1349741 | Msa0270060:CDS | 30.0% | |
| TTTGAGAACGTTATATGACA+TGG | + | chr2_3:1349823-1349842 | Msa0270060:intron | 30.0% | |
| ATATCTAAATCCTTCCAGTA+TGG | + | chr2_3:1350266-1350285 | Msa0270060:intron | 30.0% | |
| TTGAAGATTTATCATCCTAG+TGG | + | chr2_3:1350500-1350519 | Msa0270060:intron | 30.0% | |
| AAAAAGTGATTACTACCACT+AGG | - | chr2_3:1350518-1350537 | None:intergenic | 30.0% | |
| !!! | CTTTTGTATATTGGTTTGCA+GGG | + | chr2_3:1350624-1350643 | Msa0270060:intron | 30.0% |
| !!! | TTTTGTATATTGGTTTGCAG+GGG | + | chr2_3:1350625-1350644 | Msa0270060:intron | 30.0% |
| TCTATCACTATCATCTCTAT+GGG | - | chr2_3:1350661-1350680 | None:intergenic | 30.0% | |
| CAAAATCCAAGTTCATTTCA+TGG | + | chr2_3:1350919-1350938 | Msa0270060:three_prime_UTR | 30.0% | |
| GAATGACTGAAATCACAAAA+GGG | - | chr2_3:1351066-1351085 | None:intergenic | 30.0% | |
| TGAATGACTGAAATCACAAA+AGG | - | chr2_3:1351067-1351086 | None:intergenic | 30.0% | |
| AATATTGGTGTACATAAAGG+TGG | + | chr2_3:1351095-1351114 | Msa0270060:three_prime_UTR | 30.0% | |
| ! | GAAGAAAGGTAGGAGTATAT+TGG | - | chr2_3:1346482-1346501 | None:intergenic | 35.0% |
| AGACAAGACATGCAATAGAA+TGG | - | chr2_3:1346724-1346743 | None:intergenic | 35.0% | |
| ATGTCATGTAATGTCATGTC+AGG | + | chr2_3:1346883-1346902 | Msa0270060:intron | 35.0% | |
| TGTCATGTAATGTCATGTCA+GGG | + | chr2_3:1346884-1346903 | Msa0270060:intron | 35.0% | |
| TCTTTCCGGATCCAAAAAAT+AGG | + | chr2_3:1346912-1346931 | Msa0270060:CDS | 35.0% | |
| !! | GTTTTCTTTTTTGCAGAGAC+TGG | + | chr2_3:1347089-1347108 | Msa0270060:intron | 35.0% |
| GGGACTAATTTATTCAATGC+CGG | + | chr2_3:1347119-1347138 | Msa0270060:intron | 35.0% | |
| !! | GCAAGGTTTGTTATATTTGG+GGG | + | chr2_3:1347169-1347188 | Msa0270060:intron | 35.0% |
| GAGAATTAGCTAGAGGTAAT+GGG | - | chr2_3:1347227-1347246 | None:intergenic | 35.0% | |
| AGAGAATTAGCTAGAGGTAA+TGG | - | chr2_3:1347228-1347247 | None:intergenic | 35.0% | |
| ATTAGAGCATGAAGTGAAGT+TGG | - | chr2_3:1347392-1347411 | None:intergenic | 35.0% | |
| TGGTTCAAGATTAAACTCCA+AGG | - | chr2_3:1347470-1347489 | None:intergenic | 35.0% | |
| GAATCTGCATATCAGATTAC+TGG | - | chr2_3:1347490-1347509 | None:intergenic | 35.0% | |
| ! | TTCAATTGATGACATCTACC+TGG | + | chr2_3:1347610-1347629 | Msa0270060:intron | 35.0% |
| ATCACAACAAAATCACCTGA+CGG | - | chr2_3:1347809-1347828 | None:intergenic | 35.0% | |
| ATGGATGGAAGAATTTAGCT+TGG | + | chr2_3:1347855-1347874 | Msa0270060:CDS | 35.0% | |
| !!! | GTTAATTTGTTTTCCCTCTG+TGG | + | chr2_3:1347939-1347958 | Msa0270060:intron | 35.0% |
| GGTCAAAATTATCGACAAGA+AGG | - | chr2_3:1348095-1348114 | None:intergenic | 35.0% | |
| !! | TCGATAATTTTGACCCGAAA+AGG | + | chr2_3:1348100-1348119 | Msa0270060:CDS | 35.0% |
| !! | AATTTTGACCCGAAAAGGTA+AGG | + | chr2_3:1348105-1348124 | Msa0270060:intron | 35.0% |
| ! | GTAACAATTGAGTGTTGCAA+AGG | - | chr2_3:1348180-1348199 | None:intergenic | 35.0% |
| ! | TGAACTAATGCGGATCTTTT+TGG | + | chr2_3:1348231-1348250 | Msa0270060:intron | 35.0% |
| GAATTTCTTTGTTAAGCTCG+CGG | + | chr2_3:1348300-1348319 | Msa0270060:intron | 35.0% | |
| AATTTCTTTGTTAAGCTCGC+GGG | + | chr2_3:1348301-1348320 | Msa0270060:intron | 35.0% | |
| CAGTCTTACAAGCAAACTTA+TGG | + | chr2_3:1348711-1348730 | Msa0270060:intron | 35.0% | |
| AAAGGACCTAAAGGTGAAAA+TGG | - | chr2_3:1348862-1348881 | None:intergenic | 35.0% | |
| GTGTAGAAAAAAGGACCTAA+AGG | - | chr2_3:1348871-1348890 | None:intergenic | 35.0% | |
| !! | AATAGAGTACTGCATTGGTT+GGG | - | chr2_3:1349137-1349156 | None:intergenic | 35.0% |
| !! | TAATAGAGTACTGCATTGGT+TGG | - | chr2_3:1349138-1349157 | None:intergenic | 35.0% |
| ATAATTTATCTCTCGACTCC+TGG | + | chr2_3:1349391-1349410 | Msa0270060:intron | 35.0% | |
| TAATTTATCTCTCGACTCCT+GGG | + | chr2_3:1349392-1349411 | Msa0270060:intron | 35.0% | |
| ATGAATGAGTATACATTCCC+AGG | - | chr2_3:1349412-1349431 | None:intergenic | 35.0% | |
| ! | TAACTTGTATTACAGATGGG+TGG | + | chr2_3:1349675-1349694 | Msa0270060:intron | 35.0% |
| !! | TTGCTTTTCTTATCCATACC+TGG | - | chr2_3:1349756-1349775 | None:intergenic | 35.0% |
| TTGAGATGGGACTATATGTA+GGG | - | chr2_3:1350003-1350022 | None:intergenic | 35.0% | |
| ! | TTTGAGATGGGACTATATGT+AGG | - | chr2_3:1350004-1350023 | None:intergenic | 35.0% |
| TCCAATATTTCGATTCTGCA+TGG | + | chr2_3:1350113-1350132 | Msa0270060:intron | 35.0% | |
| ACCATGCAGAATCGAAATAT+TGG | - | chr2_3:1350117-1350136 | None:intergenic | 35.0% | |
| ATTTAGATATGCCACGAACA+TGG | - | chr2_3:1350256-1350275 | None:intergenic | 35.0% | |
| TCATCTCTCAGCAATATTTC+AGG | + | chr2_3:1350293-1350312 | Msa0270060:intron | 35.0% | |
| CATCTCTCAGCAATATTTCA+GGG | + | chr2_3:1350294-1350313 | Msa0270060:intron | 35.0% | |
| GGTGATCGAATGAAAAATGT+AGG | + | chr2_3:1350315-1350334 | Msa0270060:CDS | 35.0% | |
| TCGAATGAAAAATGTAGGTG+TGG | + | chr2_3:1350320-1350339 | Msa0270060:CDS | 35.0% | |
| AATGAAAAATGTAGGTGTGG+TGG | + | chr2_3:1350323-1350342 | Msa0270060:CDS | 35.0% | |
| TCTGAGTACATAGTTCATCT+TGG | + | chr2_3:1350348-1350367 | Msa0270060:CDS | 35.0% | |
| ATATACCTTGTCTCTAAACG+CGG | + | chr2_3:1350439-1350458 | Msa0270060:intron | 35.0% | |
| TCTAAACGCGGTACATAAAA+TGG | + | chr2_3:1350451-1350470 | Msa0270060:intron | 35.0% | |
| !!! | GCTTTTGTATATTGGTTTGC+AGG | + | chr2_3:1350623-1350642 | Msa0270060:intron | 35.0% |
| GTCTATCACTATCATCTCTA+TGG | - | chr2_3:1350662-1350681 | None:intergenic | 35.0% | |
| ATGGAAAGATGCAGCAAAAA+AGG | + | chr2_3:1350815-1350834 | Msa0270060:CDS | 35.0% | |
| CATATGGATCAATCCAACAT+TGG | - | chr2_3:1350842-1350861 | None:intergenic | 35.0% | |
| TGATCCATATGAACAACAAC+AGG | + | chr2_3:1350851-1350870 | Msa0270060:CDS | 35.0% | |
| ! | TTTGCCTGTTGTTGTTCATA+TGG | - | chr2_3:1350858-1350877 | None:intergenic | 35.0% |
| !! | AGTCATTAGTCTGTTTTGTG+AGG | + | chr2_3:1350885-1350904 | Msa0270060:exon | 35.0% |
| TGTTGACCATGAAATGAACT+TGG | - | chr2_3:1350928-1350947 | None:intergenic | 35.0% | |
| GGTGGTATAGATGTGTTAAT+AGG | + | chr2_3:1351113-1351132 | Msa0270060:three_prime_UTR | 35.0% | |
| GGTATAGATGTGTTAATAGG+AGG | + | chr2_3:1351116-1351135 | Msa0270060:three_prime_UTR | 35.0% | |
| TATTTACACTGACCTTCAGA+GGG | - | chr2_3:1351178-1351197 | None:intergenic | 35.0% | |
| TGAGTGAAGAAGACAAGACA+AGG | - | chr2_3:1346600-1346619 | None:intergenic | 40.0% | |
| TTGTCTTCTTCACTCAGTTC+TGG | + | chr2_3:1346604-1346623 | Msa0270060:CDS | 40.0% | |
| AGACATGCAATAGAATGGTC+TGG | - | chr2_3:1346719-1346738 | None:intergenic | 40.0% | |
| ! | AAAATAAGCGCCGCAAATCA+AGG | - | chr2_3:1346969-1346988 | None:intergenic | 40.0% |
| !! | ATTTGCGGCGCTTATTTTCT+TGG | + | chr2_3:1346971-1346990 | Msa0270060:CDS | 40.0% |
| !! | GGTTTGTTATATTTGGGGGT+AGG | + | chr2_3:1347173-1347192 | Msa0270060:intron | 40.0% |
| TTGTTATATTTGGGGGTAGG+AGG | + | chr2_3:1347176-1347195 | Msa0270060:intron | 40.0% | |
| AGAGGAAGAGAATTAGCTAG+AGG | - | chr2_3:1347234-1347253 | None:intergenic | 40.0% | |
| GAACCACCCATTGAATTTGT+TGG | + | chr2_3:1347646-1347665 | Msa0270060:intron | 40.0% | |
| TAGCCAACAAATTCAATGGG+TGG | - | chr2_3:1347652-1347671 | None:intergenic | 40.0% | |
| TCACAACAAAATCACCTGAC+GGG | - | chr2_3:1347808-1347827 | None:intergenic | 40.0% | |
| !! | CATTATGATGGCTTTGTGGA+TGG | + | chr2_3:1347836-1347855 | Msa0270060:CDS | 40.0% |
| TCTCTCTATCATGACATAGG+TGG | + | chr2_3:1348001-1348020 | Msa0270060:intron | 40.0% | |
| TTGTAGTCAGCAACTATGTC+TGG | - | chr2_3:1348048-1348067 | None:intergenic | 40.0% | |
| !! | ATGGTGTTGGTGAAGAAACA+TGG | - | chr2_3:1348267-1348286 | None:intergenic | 40.0% |
| TTCTTCACCAACACCATTGA+TGG | + | chr2_3:1348270-1348289 | Msa0270060:intron | 40.0% | |
| CTCGAAAAAGACATCCCATA+GGG | - | chr2_3:1348369-1348388 | None:intergenic | 40.0% | |
| ACTCGAAAAAGACATCCCAT+AGG | - | chr2_3:1348370-1348389 | None:intergenic | 40.0% | |
| !!! | ATGGGATGTCTTTTTCGAGT+TGG | + | chr2_3:1348370-1348389 | Msa0270060:intron | 40.0% |
| ! | TCTCCACCATTTTCACCTTT+AGG | + | chr2_3:1348853-1348872 | Msa0270060:intron | 40.0% |
| ! | AAGCAGGATCAAAAGTACAC+AGG | + | chr2_3:1349038-1349057 | Msa0270060:CDS | 40.0% |
| GTTTAGCAACAGCACTCATT+TGG | + | chr2_3:1349089-1349108 | Msa0270060:intron | 40.0% | |
| TTATGCTGTCTCTGTACAGA+AGG | + | chr2_3:1349500-1349519 | Msa0270060:intron | 40.0% | |
| TTACAGATGGGTGGAAATGA+TGG | + | chr2_3:1349684-1349703 | Msa0270060:intron | 40.0% | |
| ATGTGTATGGCATATGATCC+AGG | + | chr2_3:1349735-1349754 | Msa0270060:CDS | 40.0% | |
| TATGGCATATGATCCAGGTA+TGG | + | chr2_3:1349740-1349759 | Msa0270060:intron | 40.0% | |
| AGAATGACTTAATCCATGCC+TGG | + | chr2_3:1350175-1350194 | Msa0270060:intron | 40.0% | |
| GAATGACTTAATCCATGCCT+GGG | + | chr2_3:1350176-1350195 | Msa0270060:intron | 40.0% | |
| AATGACTTAATCCATGCCTG+GGG | + | chr2_3:1350177-1350196 | Msa0270060:CDS | 40.0% | |
| ACAACTTGGTTATTGTGCAC+AGG | + | chr2_3:1350209-1350228 | Msa0270060:CDS | 40.0% | |
| GTGTTATAACACCATGTTCG+TGG | + | chr2_3:1350242-1350261 | Msa0270060:intron | 40.0% | |
| AGATGAACAACCATACTGGA+AGG | - | chr2_3:1350279-1350298 | None:intergenic | 40.0% | |
| TGAGAGATGAACAACCATAC+TGG | - | chr2_3:1350283-1350302 | None:intergenic | 40.0% | |
| AGAATCTACTACATGGTTGC+AGG | + | chr2_3:1350749-1350768 | Msa0270060:intron | 40.0% | |
| GCAGTCGTATATTGAAATGC+AGG | + | chr2_3:1350779-1350798 | Msa0270060:CDS | 40.0% | |
| !! | TGCAGGTTTTTGGGAAAAGA+TGG | + | chr2_3:1350796-1350815 | Msa0270060:CDS | 40.0% |
| CAGCAAAAAAGGACCAATGT+TGG | + | chr2_3:1350826-1350845 | Msa0270060:CDS | 40.0% | |
| ATTTACACTGACCTTCAGAG+GGG | - | chr2_3:1351177-1351196 | None:intergenic | 40.0% | |
| CTATTTACACTGACCTTCAG+AGG | - | chr2_3:1351179-1351198 | None:intergenic | 40.0% | |
| ! | CTCTGAAGGTCAGTGTAAAT+AGG | + | chr2_3:1351177-1351196 | Msa0270060:three_prime_UTR | 40.0% |
| GTCAGTGTAAATAGGTCACA+TGG | + | chr2_3:1351185-1351204 | Msa0270060:three_prime_UTR | 40.0% | |
| TACTCCTACCTTTCTTCGCT+CGG | + | chr2_3:1346485-1346504 | Msa0270060:CDS | 45.0% | |
| !! | ATGTCAGGGTGTTGTCTTTC+CGG | + | chr2_3:1346898-1346917 | Msa0270060:intron | 45.0% |
| !! | GAAGAATGAGGAGTGTCCAA+AGG | - | chr2_3:1346943-1346962 | None:intergenic | 45.0% |
| TGGCAATGCATTCTCTGCAA+AGG | + | chr2_3:1346991-1347010 | Msa0270060:CDS | 45.0% | |
| TGCCTCAAGGAATTGTTGCT+AGG | + | chr2_3:1347299-1347318 | Msa0270060:intron | 45.0% | |
| GTCCTAGCAACAATTCCTTG+AGG | - | chr2_3:1347304-1347323 | None:intergenic | 45.0% | |
| TGTTGCTAGGACCTCTAACT+TGG | + | chr2_3:1347312-1347331 | Msa0270060:intron | 45.0% | |
| GGACCTCTAACTTGGAAACA+CGG | + | chr2_3:1347320-1347339 | Msa0270060:intron | 45.0% | |
| ACACCAGAGTAGTCCCATAA+GGG | - | chr2_3:1347346-1347365 | None:intergenic | 45.0% | |
| TACACCAGAGTAGTCCCATA+AGG | - | chr2_3:1347347-1347366 | None:intergenic | 45.0% | |
| GGTTCGAAATTCTCTGAACC+AGG | - | chr2_3:1347631-1347650 | None:intergenic | 45.0% | |
| !! | ATGATGGCTTTGTGGATGGA+TGG | + | chr2_3:1347840-1347859 | Msa0270060:CDS | 45.0% |
| TAGGAGTAGATGACCACAGA+GGG | - | chr2_3:1347955-1347974 | None:intergenic | 45.0% | |
| ATAGGAGTAGATGACCACAG+AGG | - | chr2_3:1347956-1347975 | None:intergenic | 45.0% | |
| ! | CACAAGTGCCTTACCTTTTC+GGG | - | chr2_3:1348116-1348135 | None:intergenic | 45.0% |
| ! | GCACAAGTGCCTTACCTTTT+CGG | - | chr2_3:1348117-1348136 | None:intergenic | 45.0% |
| TTCACTTGCAAAACCAGGTG+TGG | + | chr2_3:1348418-1348437 | Msa0270060:intron | 45.0% | |
| GGACCTAAAGGTGAAAATGG+TGG | - | chr2_3:1348859-1348878 | None:intergenic | 45.0% | |
| CCTGCTTTATGAACTGTCAG+TGG | - | chr2_3:1349025-1349044 | None:intergenic | 45.0% | |
| CCACTGACAGTTCATAAAGC+AGG | + | chr2_3:1349022-1349041 | Msa0270060:CDS | 45.0% | |
| GTTGCTAAACAGCTAGAGGT+GGG | - | chr2_3:1349079-1349098 | None:intergenic | 45.0% | |
| TGTTGCTAAACAGCTAGAGG+TGG | - | chr2_3:1349080-1349099 | None:intergenic | 45.0% | |
| TGCTGTTGCTAAACAGCTAG+AGG | - | chr2_3:1349083-1349102 | None:intergenic | 45.0% | |
| !! | GCATTGGTTGGGTCATAACA+AGG | - | chr2_3:1349126-1349145 | None:intergenic | 45.0% |
| ACTGTTTACCCTAAGCAAGG+AGG | - | chr2_3:1349574-1349593 | None:intergenic | 45.0% | |
| GCAACTGTTTACCCTAAGCA+AGG | - | chr2_3:1349577-1349596 | None:intergenic | 45.0% | |
| ATGTACCGCGTTTAGAGACA+AGG | - | chr2_3:1350447-1350466 | None:intergenic | 45.0% | |
| TGATATGGTGTGTGCGACTT+CGG | - | chr2_3:1350962-1350981 | None:intergenic | 45.0% | |
| !!! | TCAATTAATTAATTTTATTT+TGG | + | chr2_3:1346810-1346829 | Msa0270060:intron | 5.0% |
| !!! | CAATTAATTAATTTTATTTT+GGG | + | chr2_3:1346811-1346830 | Msa0270060:intron | 5.0% |
| !!! | AATTAATTAATTTTATTTTG+GGG | + | chr2_3:1346812-1346831 | Msa0270060:intron | 5.0% |
| !!! | TTTGTAAAAAATATTTTTTT+TGG | - | chr2_3:1350039-1350058 | None:intergenic | 5.0% |
| ! | TTTTGCAGAGACTGGCACGA+TGG | + | chr2_3:1347097-1347116 | Msa0270060:intron | 50.0% |
| TTTGCAGAGACTGGCACGAT+GGG | + | chr2_3:1347098-1347117 | Msa0270060:intron | 50.0% | |
| !! | GAAGGGCGGCATTGTTTCTA+GGG | - | chr2_3:1347265-1347284 | None:intergenic | 50.0% |
| ! | AGAAGGGCGGCATTGTTTCT+AGG | - | chr2_3:1347266-1347285 | None:intergenic | 50.0% |
| TAGAAACAATGCCGCCCTTC+TGG | + | chr2_3:1347265-1347284 | Msa0270060:intron | 50.0% | |
| GCAATGCCTGAGTTCCAGAA+GGG | - | chr2_3:1347282-1347301 | None:intergenic | 50.0% | |
| ACTTGGAAACACGGCCCTTA+TGG | + | chr2_3:1347329-1347348 | Msa0270060:intron | 50.0% | |
| CTTGGAAACACGGCCCTTAT+GGG | + | chr2_3:1347330-1347349 | Msa0270060:intron | 50.0% | |
| !! | TATCTGCTGACTCATACCGC+CGG | + | chr2_3:1347774-1347793 | Msa0270060:intron | 50.0% |
| TTGCAAAACCAGGTGTGGCA+AGG | + | chr2_3:1348423-1348442 | Msa0270060:intron | 50.0% | |
| AGAGATATCACAGCCTGCAC+TGG | + | chr2_3:1348973-1348992 | Msa0270060:CDS | 50.0% | |
| GATTTACCAGGATCCAGTGC+AGG | - | chr2_3:1348989-1349008 | None:intergenic | 50.0% | |
| TTACCCTAAGCAAGGAGGAG+CGG | - | chr2_3:1349569-1349588 | None:intergenic | 50.0% | |
| CGGGGGATCTAATGGAAATG+AGG | + | chr2_3:1350383-1350402 | Msa0270060:CDS | 50.0% | |
| CTACTACATGGTTGCAGGTG+AGG | + | chr2_3:1350754-1350773 | Msa0270060:intron | 50.0% | |
| ! | AGTTTTTGTCGCCCCTCTGA+AGG | + | chr2_3:1351163-1351182 | Msa0270060:three_prime_UTR | 50.0% |
| CCTACCTTTCTTCGCTCGGT+CGG | + | chr2_3:1346489-1346508 | Msa0270060:CDS | 55.0% | |
| TTGCAGAGACTGGCACGATG+GGG | + | chr2_3:1347099-1347118 | Msa0270060:intron | 55.0% | |
| ATGCCTGAGTTCCAGAAGGG+CGG | - | chr2_3:1347279-1347298 | None:intergenic | 55.0% | |
| GGCAATGCCTGAGTTCCAGA+AGG | - | chr2_3:1347283-1347302 | None:intergenic | 55.0% | |
| ! | GGAACTCAGGCATTGCCTCA+AGG | + | chr2_3:1347286-1347305 | Msa0270060:intron | 55.0% |
| GGGCCGTGTTTCCAAGTTAG+AGG | - | chr2_3:1347326-1347345 | None:intergenic | 55.0% | |
| TAAGCTCGCGGGCTTACAGT+TGG | + | chr2_3:1348312-1348331 | Msa0270060:intron | 55.0% | |
| GCTAGAGGTGGGAGGAAACA+AGG | - | chr2_3:1349068-1349087 | None:intergenic | 55.0% | |
| GCTAAACAGCTAGAGGTGGG+AGG | - | chr2_3:1349076-1349095 | None:intergenic | 55.0% | |
| CTTAATCCATGCCTGGGGAC+TGG | + | chr2_3:1350182-1350201 | Msa0270060:CDS | 55.0% | |
| AAGTTGTCTGTCCAGTCCCC+AGG | - | chr2_3:1350196-1350215 | None:intergenic | 55.0% | |
| TGGGGACTGGACAGACAACT+TGG | + | chr2_3:1350195-1350214 | Msa0270060:CDS | 55.0% | |
| CCATTAGATCCCCCGAGAGT+GGG | - | chr2_3:1350378-1350397 | None:intergenic | 55.0% | |
| TCCATTAGATCCCCCGAGAG+TGG | - | chr2_3:1350379-1350398 | None:intergenic | 55.0% | |
| CCGACCGAGCGAAGAAAGGT+AGG | - | chr2_3:1346492-1346511 | None:intergenic | 60.0% | |
| CAGACCGACCGAGCGAAGAA+AGG | - | chr2_3:1346496-1346515 | None:intergenic | 60.0% | |
| !! | ATGCCGCCCTTCTGGAACTC+AGG | + | chr2_3:1347273-1347292 | Msa0270060:intron | 60.0% |
| CGGCCCTTATGGGACTACTC+TGG | + | chr2_3:1347340-1347359 | Msa0270060:intron | 60.0% | |
| CCAGGTGTGGCAAGGAGAGT+CGG | + | chr2_3:1348431-1348450 | Msa0270060:intron | 60.0% | |
| TCACAGCCTGCACTGGATCC+TGG | + | chr2_3:1348980-1348999 | Msa0270060:CDS | 60.0% | |
| AGCACCGCTCCTCCTTGCTT+AGG | + | chr2_3:1349562-1349581 | Msa0270060:CDS | 60.0% | |
| GCACCGCTCCTCCTTGCTTA+GGG | + | chr2_3:1349563-1349582 | Msa0270060:CDS | 60.0% | |
| CATCTTGGCCTGCCCACTCT+CGG | + | chr2_3:1350363-1350382 | Msa0270060:CDS | 60.0% | |
| ATCTTGGCCTGCCCACTCTC+GGG | + | chr2_3:1350364-1350383 | Msa0270060:CDS | 60.0% | |
| CCCACTCTCGGGGGATCTAA+TGG | + | chr2_3:1350375-1350394 | Msa0270060:CDS | 60.0% | |
| !! | CTGCTGACTCATACCGCCGG+TGG | + | chr2_3:1347777-1347796 | Msa0270060:intron | 65.0% |
| CACCTGACGGGAACTGCCAC+CGG | - | chr2_3:1347796-1347815 | None:intergenic | 65.0% | |
| CCGACTCTCCTTGCCACACC+TGG | - | chr2_3:1348434-1348453 | None:intergenic | 65.0% | |
| GTCTGTCCAGTCCCCAGGCA+TGG | - | chr2_3:1350191-1350210 | None:intergenic | 65.0% | |
| TCTTGGCCTGCCCACTCTCG+GGG | + | chr2_3:1350365-1350384 | Msa0270060:CDS | 65.0% | |
| TAGATCCCCCGAGAGTGGGC+AGG | - | chr2_3:1350374-1350393 | None:intergenic | 65.0% | |
| CTGACGGGAACTGCCACCGG+CGG | - | chr2_3:1347793-1347812 | None:intergenic | 70.0% | |
| CTTGGCCTGCCCACTCTCGG+GGG | + | chr2_3:1350366-1350385 | Msa0270060:CDS | 70.0% | |
| CGCCGGTGGCAGTTCCCGTC+AGG | + | chr2_3:1347791-1347810 | Msa0270060:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 1346447 | 1351284 | 1346447 | ID=Msa0270060;Name=Msa0270060 |
| chr2_3 | mRNA | 1346447 | 1351284 | 1346447 | ID=Msa0270060-mRNA-1;Parent=Msa0270060;Name=Msa0270060-mRNA-1;_AED=0.20;_eAED=0.20;_QI=14|0.8|0.72|1|0.8|0.72|11|391|373 |
| chr2_3 | exon | 1346447 | 1346667 | 1346447 | ID=Msa0270060-mRNA-1:exon:554;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1346905 | 1347028 | 1346905 | ID=Msa0270060-mRNA-1:exon:555;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1347813 | 1347921 | 1347813 | ID=Msa0270060-mRNA-1:exon:556;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1348020 | 1348121 | 1348020 | ID=Msa0270060-mRNA-1:exon:557;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1348943 | 1349059 | 1348943 | ID=Msa0270060-mRNA-1:exon:558;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1349519 | 1349584 | 1349519 | ID=Msa0270060-mRNA-1:exon:559;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1349690 | 1349756 | 1349690 | ID=Msa0270060-mRNA-1:exon:560;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1350177 | 1350230 | 1350177 | ID=Msa0270060-mRNA-1:exon:561;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1350315 | 1350425 | 1350315 | ID=Msa0270060-mRNA-1:exon:562;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1350645 | 1350686 | 1350645 | ID=Msa0270060-mRNA-1:exon:563;Parent=Msa0270060-mRNA-1 |
| chr2_3 | exon | 1350771 | 1351284 | 1350771 | ID=Msa0270060-mRNA-1:exon:564;Parent=Msa0270060-mRNA-1 |
| chr2_3 | five_prime_UTR | 1346447 | 1346460 | 1346447 | ID=Msa0270060-mRNA-1:five_prime_utr;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1346461 | 1346667 | 1346461 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1346905 | 1347028 | 1346905 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1347813 | 1347921 | 1347813 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1348020 | 1348121 | 1348020 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1348943 | 1349059 | 1348943 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1349519 | 1349584 | 1349519 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1349690 | 1349756 | 1349690 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1350177 | 1350230 | 1350177 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1350315 | 1350425 | 1350315 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1350645 | 1350686 | 1350645 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | CDS | 1350771 | 1350893 | 1350771 | ID=Msa0270060-mRNA-1:cds;Parent=Msa0270060-mRNA-1 |
| chr2_3 | three_prime_UTR | 1350894 | 1351284 | 1350894 | ID=Msa0270060-mRNA-1:three_prime_utr;Parent=Msa0270060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
