AlfalfaGEDB | Msa0790550

M. sativa cultivar zhongmu-4 / Msa0790550

KEGG: -
GO: -
PFAM: PF05212.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790550	XP_003592883.2	97.328	262	0	1	117	378	139	393	0.0	540

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790550	G7IL64	97.328	262	0	1	117	378	139	393	0.0	540

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0022000	Msa0790550	0.802163	6.389804e-49	-8.615850e-47
Msa0031570	Msa0790550	0.805544	1.268251e-49	-8.615850e-47
Msa0243480	Msa0790550	0.806800	6.897987e-50	-8.615850e-47
Msa0267370	Msa0790550	0.803749	3.004581e-49	-8.615850e-47
Msa0270060	Msa0790550	0.964007	8.692144e-123	-8.615850e-47
Msa0274640	Msa0790550	0.803285	3.749796e-49	-8.615850e-47
Msa0314070	Msa0790550	0.807876	4.080491e-50	-8.615850e-47
Msa0348550	Msa0790550	0.805484	1.305791e-49	-8.615850e-47
Msa0363790	Msa0790550	0.808023	3.796317e-50	-8.615850e-47
Msa0380930	Msa0790550	0.804090	2.552610e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790550	MtrunA17_Chr2g0276851	97.328	262	0	1	117	378	139	393	0.0	540
Msa0790550	MtrunA17_Chr2g0276851	97.917	48	1	0	67	114	1	48	5.74e-14	72.8
Msa0790550	MtrunA17_Chr1g0189401	61.811	254	92	2	117	369	142	391	2.76e-117	346
Msa0790550	MtrunA17_Chr2g0281421	58.366	257	105	1	117	371	138	394	1.16e-111	332
Msa0790550	MtrunA17_Chr4g0047961	51.389	288	134	2	82	369	83	364	2.92e-107	319
Msa0790550	MtrunA17_Chr7g0227041	46.914	243	112	4	117	359	164	389	7.97e-71	227
Msa0790550	MtrunA17_Chr3g0123571	46.473	241	123	5	93	333	135	369	2.77e-69	223
Msa0790550	MtrunA17_Chr8g0381611	52.821	195	87	4	117	311	149	338	7.75e-68	219
Msa0790550	MtrunA17_Chr8g0381601	47.005	217	110	4	117	333	157	368	3.82e-66	214
Msa0790550	MtrunA17_Chr4g0028891	44.856	243	116	6	117	359	178	402	3.87e-63	207

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790550	AT4G18530.1	68.359	256	77	1	117	368	134	389	6.24e-133	386
Msa0790550	AT4G18530.3	68.359	256	77	1	117	368	129	384	6.77e-133	385
Msa0790550	AT4G12840.3	61.538	260	93	1	117	369	41	300	5.06e-123	357
Msa0790550	AT4G12840.2	61.538	260	93	1	117	369	135	394	6.69e-123	360
Msa0790550	AT4G12840.1	61.538	260	93	1	117	369	135	394	7.88e-123	360
Msa0790550	AT1G11170.1	53.261	276	128	1	93	367	119	394	1.34e-103	313
Msa0790550	AT1G11170.6	53.261	276	128	1	93	367	119	394	1.34e-103	313
Msa0790550	AT1G11170.5	53.261	276	128	1	93	367	119	394	1.34e-103	313
Msa0790550	AT1G11170.7	53.261	276	128	1	93	367	119	394	1.34e-103	313
Msa0790550	AT4G18530.2	77.778	171	38	0	117	287	134	304	1.63e-100	300

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Find 86 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGCGCCGCAAATCA+AGG	0.491462	5_3:+1345257	None:intergenic
AAATCAAGGAAAGAAGAATG+AGG	0.639950	5_3:+1345271	None:intergenic
AAGAAGAAGAATGATTGGAA+AGG	0.520676	5_3:+1345657	None:intergenic
AAGCAGGATCAAAAGTACAC+AGG	0.658718	5_3:-1343181	Msa0790550:intron
AAGGGAAAAGAATAAGAATA+AGG	0.339192	5_3:+1345676	None:intergenic
AAGTTGTCTGTCCAGTCCCC+AGG	0.535291	5_3:+1342026	None:intergenic
AATAACATTTGATAATATTT+CGG	0.296138	5_3:+1341011	None:intergenic
AATATTGGTGTACATAAAGG+TGG	0.609781	5_3:-1341124	Msa0790550:three_prime_UTR
AATGACTTAATCCATGCCTG+GGG	0.719521	5_3:-1342042	Msa0790550:CDS
ACAACTTGGTTATTGTGCAC+AGG	0.563090	5_3:-1342010	Msa0790550:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAGAATGATTGGAAA+GGG	+	chr5_3:1341073-1341092	None:intergenic	30.0%
AAGAAGAAGAATGATTGGAA+AGG	+	chr5_3:1341074-1341093	None:intergenic	30.0%
AGAAGAAGAAGAAGAATGAT+TGG	+	chr5_3:1341079-1341098	None:intergenic	30.0%
AACCAAATAATGATGATCTG+AGG	+	chr5_3:1341209-1341228	None:intergenic	30.0%
CAAAAAATAGGTTGTTCCTT+TGG	-	chr5_3:1341429-1341448	Msa0790550:CDS	30.0%
AAATCAAGGAAAGAAGAATG+AGG	+	chr5_3:1341460-1341479	None:intergenic	30.0%
TAATTGGATGTTGTTGTATC+CGG	+	chr5_3:1341650-1341669	None:intergenic	30.0%
ATCCAATTATAATGCATGCA+AGG	-	chr5_3:1341661-1341680	Msa0790550:intron	30.0%
AACCTTGCATGCATTATAAT+TGG	+	chr5_3:1341666-1341685	None:intergenic	30.0%
GAAATAGCCAACAAATTCAA+TGG	+	chr5_3:1342165-1342184	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	1340957	1345793	1340957	ID=Msa0790550;Name=Msa0790550
chr5_3	mRNA	1340957	1345793	1340957	ID=Msa0790550-mRNA-1;Parent=Msa0790550;Name=Msa0790550-mRNA-1;_AED=0.20;_eAED=0.20;_QI=14\|0.8\|0.72\|1\|0.9\|0.90\|11\|391\|378
chr5_3	exon	1340957	1341470	1340957	ID=Msa0790550-mRNA-1:exon:506;Parent=Msa0790550-mRNA-1
chr5_3	exon	1341555	1341596	1341555	ID=Msa0790550-mRNA-1:exon:505;Parent=Msa0790550-mRNA-1
chr5_3	exon	1341816	1341926	1341816	ID=Msa0790550-mRNA-1:exon:504;Parent=Msa0790550-mRNA-1
chr5_3	exon	1342011	1342064	1342011	ID=Msa0790550-mRNA-1:exon:503;Parent=Msa0790550-mRNA-1
chr5_3	exon	1342485	1342551	1342485	ID=Msa0790550-mRNA-1:exon:502;Parent=Msa0790550-mRNA-1
chr5_3	exon	1342657	1342722	1342657	ID=Msa0790550-mRNA-1:exon:501;Parent=Msa0790550-mRNA-1
chr5_3	exon	1343182	1343298	1343182	ID=Msa0790550-mRNA-1:exon:500;Parent=Msa0790550-mRNA-1
chr5_3	exon	1344120	1344221	1344120	ID=Msa0790550-mRNA-1:exon:499;Parent=Msa0790550-mRNA-1
chr5_3	exon	1344320	1344428	1344320	ID=Msa0790550-mRNA-1:exon:498;Parent=Msa0790550-mRNA-1
chr5_3	exon	1345217	1345340	1345217	ID=Msa0790550-mRNA-1:exon:497;Parent=Msa0790550-mRNA-1
chr5_3	exon	1345558	1345793	1345558	ID=Msa0790550-mRNA-1:exon:496;Parent=Msa0790550-mRNA-1
chr5_3	five_prime_UTR	1345780	1345793	1345780	ID=Msa0790550-mRNA-1:five_prime_utr;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1345558	1345779	1345558	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1345217	1345340	1345217	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1344320	1344428	1344320	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1344120	1344221	1344120	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1343182	1343298	1343182	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1342657	1342722	1342657	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1342485	1342551	1342485	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1342011	1342064	1342011	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1341816	1341926	1341816	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1341555	1341596	1341555	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	CDS	1341348	1341470	1341348	ID=Msa0790550-mRNA-1:cds;Parent=Msa0790550-mRNA-1
chr5_3	three_prime_UTR	1340957	1341347	1340957	ID=Msa0790550-mRNA-1:three_prime_utr;Parent=Msa0790550-mRNA-1

Gene Sequence

>Msa0790550

ATGATTGTTATTCTTTCTCCAATATACTCCTACCTTTCTTCGCTCGGTCGGTCTGTAACTTTCTTCAATCAACTTTCTCTTCCTTATTCTTATTCTTTTCCCTTTCCAATCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATCAACCTTGTCTTGTCTTCTTCACTCAGTTCAGGAGAGAGATACAATACAAATGAAGCTTTTTAATTCTGTAACCGGTGTTGTCTTTCCGGATCCAAAAAATAGGTTGTTCCTTTGGACACTCCTCATTCTTCTTTCCTTGATTTGCGGCGCTTATTTTCTTGGCAATGCATTCTCTGCAAAGGAGTACAAACAAGTATGTGATTTTGTTGTGATGCTTTTTCATTATGATGGCTTTGTGGATGGATGGAAGAATTTAGCTTGGAGTAATCGTGCCATACATGTGTCTGCTATAAATCAAACGAAATGGTGGTTTGCAAAACGATTTTTGCATCCAGACATAGTTGCTGACTACAATTATATATTTCTCTGGGATGAGGACCTTCTTGTCGATAATTTTGACCCGAAAAGGTATTTATCTATTGTTAAAGAAGAAGGGCTAGAGATATCACAGCCTGCACTGGATCCTGGTAAATCAGAAATACATCATCCACTGACAGTTCATAAAGCAGGATCAAAAGTACACAGAAGGTATTATAAGTTTAAAGGTAGTGGAAGGTGTGATGACAATAGCACCGCTCCTCCTTGCTTAGGATGGGTGGAAATGATGGCACCAGTGTTTTCTAAAAAATCTTGGCAATGTGTATGGCATATGATCCAGAATGACTTAATCCATGCCTGGGGACTGGACAGACAACTTGGTTATTGTGCACAGGGTGATCGAATGAAAAATGTAGGTGTGGTGGATTCTGAGTACATAGTTCATCTTGGCCTGCCCACTCTCGGGGGATCTAATGGAAATGAGGCAAGTGATTTCATTTTTTATGGGTCGTCAAATTCCCATAGAGATGATAGTGATAGACCTAAAGTGAGGATGCAGTCGTATATTGAAATGCAGGTTTTTGGGAAAAGATGGAAAGATGCAGCAAAAAAGGACCAATGTTGGATTGATCCATATGAACAACAACAGGCAAATCAGACTAGTCATTAG

Protein sequence

>Msa0790550

MIVILSPIYSYLSSLGRSVTFFNQLSLPYSYSFPFPIILLLLLLLLLLLSTLSCLLHSVQERDTIQMKLFNSVTGVVFPDPKNRLFLWTLLILLSLICGAYFLGNAFSAKEYKQVCDFVVMLFHYDGFVDGWKNLAWSNRAIHVSAINQTKWWFAKRFLHPDIVADYNYIFLWDEDLLVDNFDPKRYLSIVKEEGLEISQPALDPGKSEIHHPLTVHKAGSKVHRRYYKFKGSGRCDDNSTAPPCLGWVEMMAPVFSKKSWQCVWHMIQNDLIHAWGLDRQLGYCAQGDRMKNVGVVDSEYIVHLGLPTLGGSNGNEASDFIFYGSSNSHRDDSDRPKVRMQSYIEMQVFGKRWKDAAKKDQCWIDPYEQQQANQTSH*