AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440560 MtrunA17_Chr3g0144021 93.578 218 11 1 1 218 1 215 4.21e-154 426
Msa1440560 MtrunA17_Chr1g0212511 72.848 151 37 3 20 170 22 168 5.62e-74 224
Msa1440560 MtrunA17_Chr7g0222981 46.561 189 75 4 12 197 11 176 1.86e-47 154
Msa1440560 MtrunA17_Chr2g0283141 37.363 91 56 1 55 144 24 114 3.20e-15 73.6
Msa1440560 MtrunA17_Chr4g0043891 44.262 61 34 0 85 145 8 68 1.78e-13 67.4
Msa1440560 MtrunA17_Chr7g0223471 44.444 63 35 0 83 145 45 107 2.50e-13 68.2
Msa1440560 MtrunA17_Chr1g0153171 40.789 76 45 0 85 160 90 165 1.42e-12 64.7
Msa1440560 MtrunA17_Chr8g0392991 44.262 61 34 0 85 145 96 156 3.47e-12 64.7
Msa1440560 MtrunA17_Chr4g0031341 42.623 61 35 0 85 145 25 85 2.35e-11 61.6
Msa1440560 MtrunA17_Chr5g0436661 38.462 65 40 0 85 149 33 97 5.30e-11 59.7
Msa1440560 MtrunA17_Chr7g0238431 45.000 60 33 0 85 144 8 67 5.48e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440560 AT4G35550.1 53.333 225 76 4 20 216 35 258 2.72e-69 213
Msa1440560 AT1G20700.1 49.738 191 83 4 16 204 24 203 3.38e-60 188
Msa1440560 AT1G20700.3 48.925 186 82 4 16 199 24 198 6.47e-57 179
Msa1440560 AT1G20700.2 49.275 138 59 2 67 204 15 141 6.30e-43 142
Msa1440560 AT1G20710.1 46.632 193 93 5 16 206 8 192 1.44e-42 142
Msa1440560 AT5G45980.1 46.774 62 33 0 83 144 53 114 1.38e-14 71.6
Msa1440560 AT2G33880.2 45.161 62 34 0 83 144 53 114 3.52e-14 70.9
Msa1440560 AT2G33880.1 45.161 62 34 0 83 144 53 114 3.82e-14 70.9
Msa1440560 AT1G46480.2 47.541 61 32 0 85 145 90 150 4.28e-13 65.9
Msa1440560 AT3G18010.1 40.845 71 42 0 85 155 76 146 5.72e-13 67.4
Msa1440560 AT3G11260.1 36.458 96 56 2 85 177 24 117 1.06e-12 64.7
Msa1440560 AT1G46480.1 47.541 61 32 0 85 145 90 150 1.51e-12 65.1
Msa1440560 AT5G05770.1 33.333 84 55 1 85 168 29 111 6.00e-12 61.2
Msa1440560 AT2G28610.1 46.667 60 32 0 85 144 8 67 7.63e-12 63.2
Msa1440560 AT5G59340.1 43.077 65 37 0 81 145 10 74 2.34e-11 62.0
Msa1440560 AT2G01500.1 35.577 104 57 2 71 164 37 140 8.55e-11 60.5

Find 49 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGACTAATGTTTATAAT+TGG 0.232522 tig0029093:-16804 Msa1440560:CDS
TTGAACGAGCTCTTCTGTTC+TGG 0.269547 tig0029093:+16779 None:intergenic
TACTTTCTTTGATAATTGAT+TGG 0.343505 tig0029093:-16158 Msa1440560:exon
TATGTCTTTGATCTTCTGTT+TGG 0.364760 tig0029093:+16858 None:intergenic
TTGGTTGATGACAGAATTCT+AGG 0.368659 tig0029093:-16139 Msa1440560:three_prime_UTR
AAGAGTGAAGGAGGAGGAGG+AGG 0.394048 tig0029093:-18432 Msa1440560:CDS
TCAACTTCTGTGTCTGCCTC+TGG 0.402663 tig0029093:+16715 None:intergenic
TATATATGCCACTTCATTTG+TGG 0.403737 tig0029093:+16076 None:intergenic
GTCTTTGATCTTCTGTTTGG+TGG 0.403902 tig0029093:+16861 None:intergenic
CGTTGGAGTCCAACGCTGCC+TGG 0.416225 tig0029093:+16936 None:intergenic
CTGGACACAAGATAACTTCC+AGG 0.432136 tig0029093:-16954 Msa1440560:CDS
AATTCTAGGAGTGATCTATT+AGG 0.433239 tig0029093:-16125 Msa1440560:three_prime_UTR
TGCAGGATTTGAGCACTTGT+TGG 0.434550 tig0029093:-16213 Msa1440560:intron
CTCAACAAGCTGATCAGAAA+TGG 0.436221 tig0029093:+18332 None:intergenic
GAGAAGAGTGAAGGAGGAGG+AGG 0.439930 tig0029093:-18435 Msa1440560:CDS
TGAGAGTTTATCACCTCATC+GGG 0.446050 tig0029093:-16641 Msa1440560:CDS
CCACTGATGATGGCTTGCTC+TGG 0.448763 tig0029093:-16973 Msa1440560:CDS
GCAGGATTTGAGCACTTGTT+GGG 0.456755 tig0029093:-16212 Msa1440560:intron
TCTTTGATCTTCTGTTTGGT+GGG 0.460764 tig0029093:+16862 None:intergenic
TTGAGAGTTTATCACCTCAT+CGG 0.471970 tig0029093:-16642 Msa1440560:CDS
AGTTATGACCGATGAACAAA+TGG 0.474281 tig0029093:-18388 Msa1440560:CDS
ACCGTGTTGCCCTAGTTCAA+TGG 0.479896 tig0029093:+16834 None:intergenic
TAAAAGTTCCATTTGTTCAT+CGG 0.487682 tig0029093:+18380 None:intergenic
AGGAAGAATGGCGGGATTAG+CGG 0.497878 tig0029093:-18589 None:intergenic
TACGCTCAAGTATTTGAAGC+TGG 0.512249 tig0029093:+16908 None:intergenic
CATGAGAAGAGTGAAGGAGG+AGG 0.514829 tig0029093:-18438 Msa1440560:CDS
ATTTGAAGCTGGATAGGCGT+TGG 0.517894 tig0029093:+16919 None:intergenic
TTAAGATTAATACCTATGTC+AGG 0.524253 tig0029093:+16595 None:intergenic
GTACTGTGATCCACTGATGA+TGG 0.540609 tig0029093:-16983 Msa1440560:CDS
TCAAGTATTTGAAGCTGGAT+AGG 0.541162 tig0029093:+16913 None:intergenic
AAGCAATCATCTGTTACTGC+AGG 0.542364 tig0029093:-16751 Msa1440560:CDS
GAATGTTCAGGACTGAGACT+TGG 0.551998 tig0029093:-17012 Msa1440560:intron
ACCTGCGAGGTCGTGTTGAG+TGG 0.570461 tig0029093:+18293 None:intergenic
AAAGACATAACCATTGAACT+AGG 0.570662 tig0029093:-16844 Msa1440560:CDS
ACCACTCAACACGACCTCGC+AGG 0.579613 tig0029093:-18294 Msa1440560:intron
CCAATTATAAACATTAGTCT+CGG 0.584869 tig0029093:+16804 None:intergenic
TTTATCACCTCATCGGGTCA+AGG 0.591799 tig0029093:-16635 Msa1440560:CDS
GAGCATGAGAAGAGTGAAGG+AGG 0.602160 tig0029093:-18441 Msa1440560:CDS
AAGACATAACCATTGAACTA+GGG 0.603476 tig0029093:-16843 Msa1440560:CDS
GCAGAGCATGAGAAGAGTGA+AGG 0.604376 tig0029093:-18444 Msa1440560:CDS
CCAGAGCAAGCCATCATCAG+TGG 0.606100 tig0029093:+16973 None:intergenic
AGATAACTTCCAGGCAGCGT+TGG 0.612319 tig0029093:-16945 Msa1440560:CDS
TACATATCCTTGACCCGATG+AGG 0.618531 tig0029093:+16628 None:intergenic
AGGAAATCATGCAGAGCCAG+AGG 0.631315 tig0029093:-16731 Msa1440560:CDS
ACCATTGAACTAGGGCAACA+CGG 0.634091 tig0029093:-16835 Msa1440560:CDS
TTGATGAACCACAAATGAAG+TGG 0.636166 tig0029093:-16084 Msa1440560:three_prime_UTR
TACATTCAGAGTCCTGACAT+AGG 0.642781 tig0029093:-16607 Msa1440560:intron
ATGGCGGGATTAGCGGAGAG+AGG 0.651628 tig0029093:-18582 None:intergenic
ATAGTAGTAGTTTACCTGCG+AGG 0.718032 tig0029093:+18280 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATGAAAATAGTTTAA+CGG + tig0029093:17040-17059 None:intergenic 10.0%
!! CTGTAATATAACATTTATAT+AGG + tig0029093:16687-16706 None:intergenic 15.0%
!! TCTATAAAAAAAAACACTAA+AGG + tig0029093:17402-17421 None:intergenic 15.0%
!!! TTTAATTCTCTGTTTTTTTA+AGG + tig0029093:17480-17499 None:intergenic 15.0%
!!! AAAACTAGTTTAATACAAAA+GGG + tig0029093:18121-18140 None:intergenic 15.0%
!!! AAAAACTAGTTTAATACAAA+AGG + tig0029093:18122-18141 None:intergenic 15.0%
!! TAAATTTATATGACATTAAG+TGG - tig0029093:18416-18435 Msa1440560:CDS 15.0%
!! ATATAGGCAAATTTGTATAA+GGG + tig0029093:16671-16690 None:intergenic 20.0%
!! TATATAGGCAAATTTGTATA+AGG + tig0029093:16672-16691 None:intergenic 20.0%
!!! AAAACATTCATTTTTGTAAG+AGG - tig0029093:16945-16964 Msa1440560:CDS 20.0%
!!! GAACAGAAAAATTGATTTTT+TGG + tig0029093:17267-17286 None:intergenic 20.0%
!!! AATAATGTACGATGATTTTT+CGG + tig0029093:17344-17363 None:intergenic 20.0%
!! AAAAACACTAAAGGTTTAAT+TGG + tig0029093:17393-17412 None:intergenic 20.0%
!!! TTTTTATAGGTGAATATTAG+TGG - tig0029093:17513-17532 Msa1440560:intron 20.0%
!! ATTCAATTGTAAACAACAAA+TGG + tig0029093:18310-18329 None:intergenic 20.0%
!!! TACTTTCTTTGATAATTGAT+TGG - tig0029093:18502-18521 Msa1440560:five_prime_UTR 20.0%
! AAGAAAAAGAAGAAGAGAAA+TGG - tig0029093:16191-16210 Msa1440560:CDS 25.0%
! TAAAAGTTCCATTTGTTCAT+CGG + tig0029093:16283-16302 None:intergenic 25.0%
!! AGAAAGAGAATACATGATTT+TGG - tig0029093:16620-16639 Msa1440560:CDS 25.0%
! AGAACTCACAAAATTAAATG+TGG + tig0029093:16901-16920 None:intergenic 25.0%
! ACTAATGGAAACAACTTATT+TGG + tig0029093:17130-17149 None:intergenic 25.0%
!!! ACACTTTTTGGAATTACTAA+TGG + tig0029093:17145-17164 None:intergenic 25.0%
! TTCAAATAAGTCTATCCAAA+CGG - tig0029093:17191-17210 Msa1440560:intron 25.0%
! CCTATAAAAAAAAACACTCA+AGG + tig0029093:17503-17522 None:intergenic 25.0%
!!! CCTTGAGTGTTTTTTTTTAT+AGG - tig0029093:17500-17519 Msa1440560:intron 25.0%
!! CCAATTATAAACATTAGTCT+CGG + tig0029093:17859-17878 None:intergenic 25.0%
! TTAAGATTAATACCTATGTC+AGG + tig0029093:18068-18087 None:intergenic 25.0%
! GTTGTTTACAATTGAATGAT+TGG - tig0029093:18313-18332 Msa1440560:CDS 25.0%
! AATTACTTAGCTATAAAACC+TGG - tig0029093:18361-18380 Msa1440560:CDS 25.0%
TTTGGCAACAAGAAAAAGAA+AGG + tig0029093:16132-16151 None:intergenic 30.0%
TGTTGCCAAAAACAAAAGAT+AGG - tig0029093:16142-16161 Msa1440560:three_prime_UTR 30.0%
!!! CACTTCCTATCTTTTGTTTT+TGG + tig0029093:16150-16169 None:intergenic 30.0%
AAAAAGAAGAAGAGAAATGG+AGG - tig0029093:16194-16213 Msa1440560:CDS 30.0%
!! AATTTCATTTTTGTTGTCCC+TGG - tig0029093:16794-16813 Msa1440560:CDS 30.0%
GACATTGCATAATTTATGCA+GGG - tig0029093:16844-16863 Msa1440560:CDS 30.0%
AAATTAAATGTGGAGAAGTG+AGG + tig0029093:16891-16910 None:intergenic 30.0%
! TAAACACTTGTGACACTTTT+TGG + tig0029093:17157-17176 None:intergenic 30.0%
TCAAATAAGTCTATCCAAAC+GGG - tig0029093:17192-17211 Msa1440560:intron 30.0%
!!! ATTGATTTTTTGGAATCGAG+AGG + tig0029093:17257-17276 None:intergenic 30.0%
GTCAATGTTATTGAATGTTC+AGG - tig0029093:17636-17655 Msa1440560:intron 30.0%
TATGTCTTTGATCTTCTGTT+TGG + tig0029093:17805-17824 None:intergenic 30.0%
AAAGACATAACCATTGAACT+AGG - tig0029093:17816-17835 Msa1440560:intron 30.0%
AAGACATAACCATTGAACTA+GGG - tig0029093:17817-17836 Msa1440560:intron 30.0%
CCGAGACTAATGTTTATAAT+TGG - tig0029093:17856-17875 Msa1440560:intron 30.0%
!! TCACATGTTTTGTTCTCTTT+TGG + tig0029093:17975-17994 None:intergenic 30.0%
TCTATGAATACTCACTAACT+AGG - tig0029093:18090-18109 Msa1440560:intron 30.0%
TTAATGCCTAAAACGAAGTA+TGG + tig0029093:18399-18418 None:intergenic 30.0%
!! ATTAAGTGGTTTGTTTATGC+AGG - tig0029093:18430-18449 Msa1440560:CDS 30.0%
! AATTCTAGGAGTGATCTATT+AGG - tig0029093:18535-18554 Msa1440560:five_prime_UTR 30.0%
! TTGTGGTTCATCAACATTTT+TGG + tig0029093:18570-18589 None:intergenic 30.0%
AGTTATGACCGATGAACAAA+TGG - tig0029093:16272-16291 Msa1440560:intron 35.0%
GGACATTGCATAATTTATGC+AGG - tig0029093:16843-16862 Msa1440560:CDS 35.0%
!!! TTTTTTGTCTAGTAGCCTAG+TGG + tig0029093:16926-16945 None:intergenic 35.0%
CTTATTTCCATAAGCTCTCT+AGG + tig0029093:17086-17105 None:intergenic 35.0%
AGAGAGCTTATGGAAATAAG+CGG - tig0029093:17086-17105 Msa1440560:intron 35.0%
AGTGTCACAAGTGTTTATGT+CGG - tig0029093:17160-17179 Msa1440560:intron 35.0%
! AGTGAGTGCAGGATATATTT+TGG + tig0029093:17219-17238 None:intergenic 35.0%
CTAGTCCTAAATAAGTAGCT+CGG + tig0029093:17595-17614 None:intergenic 35.0%
! TCAAGTATTTGAAGCTGGAT+AGG + tig0029093:17750-17769 None:intergenic 35.0%
TCTTTGATCTTCTGTTTGGT+GGG + tig0029093:17801-17820 None:intergenic 35.0%
TTGAGAGTTTATCACCTCAT+CGG - tig0029093:18018-18037 Msa1440560:intron 35.0%
CACATGAAGAAATTCGTGTA+AGG - tig0029093:18158-18177 Msa1440560:intron 35.0%
ATTGTCAATCGTATCGAACA+TGG + tig0029093:18187-18206 None:intergenic 35.0%
ACAATTCTCTGTGTTCAGTT+AGG - tig0029093:18202-18221 Msa1440560:intron 35.0%
CAATTCTCTGTGTTCAGTTA+GGG - tig0029093:18203-18222 Msa1440560:intron 35.0%
AATTCTCTGTGTTCAGTTAG+GGG - tig0029093:18204-18223 Msa1440560:intron 35.0%
GTATGGCTGTTTATTTAACC+AGG + tig0029093:18382-18401 None:intergenic 35.0%
! AAACAGCCATACTTCGTTTT+AGG - tig0029093:18390-18409 Msa1440560:CDS 35.0%
TTGGGAAAAATTGAAGTTGC+AGG - tig0029093:18466-18485 Msa1440560:exon 35.0%
!! TTGGTTGATGACAGAATTCT+AGG - tig0029093:18521-18540 Msa1440560:five_prime_UTR 35.0%
!! GGTTCATCAACATTTTTGGA+TGG + tig0029093:18566-18585 None:intergenic 35.0%
TTGATGAACCACAAATGAAG+TGG - tig0029093:18576-18595 Msa1440560:five_prime_UTR 35.0%
CTCAACAAGCTGATCAGAAA+TGG + tig0029093:16331-16350 None:intergenic 40.0%
ATAGTAGTAGTTTACCTGCG+AGG + tig0029093:16383-16402 None:intergenic 40.0%
!! TTTTGTGAGTTCTAGCCACT+AGG - tig0029093:16908-16927 Msa1440560:CDS 40.0%
TAGCTATCCTAGAGAGCTTA+TGG - tig0029093:17076-17095 Msa1440560:intron 40.0%
!! GGATATATTTTGGACCCGTT+TGG + tig0029093:17209-17228 None:intergenic 40.0%
AAATTGGTTACAGTGAGTGC+AGG + tig0029093:17230-17249 None:intergenic 40.0%
GGAATCGAGAGGACAAAAAT+TGG + tig0029093:17246-17265 None:intergenic 40.0%
ACCAACCGAGCTACTTATTT+AGG - tig0029093:17587-17606 Msa1440560:intron 40.0%
TCCTAAATAAGTAGCTCGGT+TGG + tig0029093:17591-17610 None:intergenic 40.0%
GACAAGCGCTAAATCAATCA+AGG + tig0029093:17619-17638 None:intergenic 40.0%
! TACGCTCAAGTATTTGAAGC+TGG + tig0029093:17755-17774 None:intergenic 40.0%
! CTTGAGCGTATTTTCGATGA+AGG - tig0029093:17765-17784 Msa1440560:intron 40.0%
! CGTATTTTCGATGAAGGCAA+TGG - tig0029093:17771-17790 Msa1440560:intron 40.0%
GTCTTTGATCTTCTGTTTGG+TGG + tig0029093:17802-17821 None:intergenic 40.0%
AAGCAATCATCTGTTACTGC+AGG - tig0029093:17909-17928 Msa1440560:intron 40.0%
TGAGAGTTTATCACCTCATC+GGG - tig0029093:18019-18038 Msa1440560:intron 40.0%
TACATTCAGAGTCCTGACAT+AGG - tig0029093:18053-18072 Msa1440560:intron 40.0%
GAATGTTCAGGACTGAGACT+TGG - tig0029093:17648-17667 Msa1440560:intron 45.0%
GTACTGTGATCCACTGATGA+TGG - tig0029093:17677-17696 Msa1440560:intron 45.0%
CTGGACACAAGATAACTTCC+AGG - tig0029093:17706-17725 Msa1440560:intron 45.0%
! ATTTGAAGCTGGATAGGCGT+TGG + tig0029093:17744-17763 None:intergenic 45.0%
ACCATTGAACTAGGGCAACA+CGG - tig0029093:17825-17844 Msa1440560:intron 45.0%
TTGAACGAGCTCTTCTGTTC+TGG + tig0029093:17884-17903 None:intergenic 45.0%
TTTATCACCTCATCGGGTCA+AGG - tig0029093:18025-18044 Msa1440560:intron 45.0%
TACATATCCTTGACCCGATG+AGG + tig0029093:18035-18054 None:intergenic 45.0%
TGCAGGATTTGAGCACTTGT+TGG - tig0029093:18447-18466 Msa1440560:CDS 45.0%
GCAGGATTTGAGCACTTGTT+GGG - tig0029093:18448-18467 Msa1440560:CDS 45.0%
GCAGAGCATGAGAAGAGTGA+AGG - tig0029093:16216-16235 Msa1440560:intron 50.0%
GAGCATGAGAAGAGTGAAGG+AGG - tig0029093:16219-16238 Msa1440560:intron 50.0%
CATGAGAAGAGTGAAGGAGG+AGG - tig0029093:16222-16241 Msa1440560:intron 50.0%
! ATGTGGAGAAGTGAGGTGTC+CGG + tig0029093:16884-16903 None:intergenic 50.0%
!! CAAGGGACACTGAAGGTACT+AGG + tig0029093:17563-17582 None:intergenic 50.0%
CTAGTACCTTCAGTGTCCCT+TGG - tig0029093:17561-17580 Msa1440560:intron 50.0%
AGATAACTTCCAGGCAGCGT+TGG - tig0029093:17715-17734 Msa1440560:intron 50.0%
ACCGTGTTGCCCTAGTTCAA+TGG + tig0029093:17829-17848 None:intergenic 50.0%
AGGAAATCATGCAGAGCCAG+AGG - tig0029093:17929-17948 Msa1440560:intron 50.0%
TCAACTTCTGTGTCTGCCTC+TGG + tig0029093:17948-17967 None:intergenic 50.0%
GAGAAGAGTGAAGGAGGAGG+AGG - tig0029093:16225-16244 Msa1440560:intron 55.0%
AAGAGTGAAGGAGGAGGAGG+AGG - tig0029093:16228-16247 Msa1440560:intron 55.0%
TCCCTGGAGCTTAGCTCAGT+TGG - tig0029093:16810-16829 Msa1440560:CDS 55.0%
GCCAACTGAGCTAAGCTCCA+GGG + tig0029093:16814-16833 None:intergenic 55.0%
CTGGAGCTTAGCTCAGTTGG+CGG - tig0029093:16813-16832 Msa1440560:CDS 55.0%
AGCTTAGCTCAGTTGGCGGT+TGG - tig0029093:16817-16836 Msa1440560:CDS 55.0%
! TGTGGAGAAGTGAGGTGTCC+GGG + tig0029093:16883-16902 None:intergenic 55.0%
!! TAGCTCGGTTGGTGAGCCAA+GGG + tig0029093:17580-17599 None:intergenic 55.0%
CCAGAGCAAGCCATCATCAG+TGG + tig0029093:17690-17709 None:intergenic 55.0%
!! CCACTGATGATGGCTTGCTC+TGG - tig0029093:17687-17706 Msa1440560:intron 55.0%
AGTGAAGGAGGAGGAGGAGG+AGG - tig0029093:16231-16250 Msa1440560:intron 60.0%
ACCACTCAACACGACCTCGC+AGG - tig0029093:16366-16385 Msa1440560:intron 60.0%
ACCTGCGAGGTCGTGTTGAG+TGG + tig0029093:16370-16389 None:intergenic 60.0%
CGCCAACTGAGCTAAGCTCC+AGG + tig0029093:16815-16834 None:intergenic 60.0%
TAGCTCAGTTGGCGGTTGGC+AGG - tig0029093:16821-16840 Msa1440560:CDS 60.0%
AGCTCAGTTGGCGGTTGGCA+GGG - tig0029093:16822-16841 Msa1440560:CDS 60.0%
CAGGGCTGAGTTTCGAACCC+CGG - tig0029093:16862-16881 Msa1440560:CDS 60.0%
! GTGGAGAAGTGAGGTGTCCG+GGG + tig0029093:16882-16901 None:intergenic 60.0%
GGTGAGCCAAGGGACACTGA+AGG + tig0029093:17570-17589 None:intergenic 60.0%
!! GTAGCTCGGTTGGTGAGCCA+AGG + tig0029093:17581-17600 None:intergenic 60.0%
GAAGGAGGAGGAGGAGGAGG+AGG - tig0029093:16234-16253 Msa1440560:intron 65.0%
CGTTGGAGTCCAACGCTGCC+TGG + tig0029093:17727-17746 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0029093 gene 16083 18599 16083 ID=Msa1440560;Name=Msa1440560
tig0029093 mRNA 16083 18599 16083 ID=Msa1440560-mRNA-1;Parent=Msa1440560;Name=Msa1440560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=127|1|1|1|0.5|0.33|3|86|218
tig0029093 exon 16083 16230 16083 ID=Msa1440560-mRNA-1:exon:12294;Parent=Msa1440560-mRNA-1
tig0029093 exon 16608 17024 16608 ID=Msa1440560-mRNA-1:exon:12293;Parent=Msa1440560-mRNA-1
tig0029093 exon 18295 18599 18295 ID=Msa1440560-mRNA-1:exon:12292;Parent=Msa1440560-mRNA-1
tig0029093 five_prime_UTR 18473 18599 18473 ID=Msa1440560-mRNA-1:five_prime_utr;Parent=Msa1440560-mRNA-1
tig0029093 CDS 18295 18472 18295 ID=Msa1440560-mRNA-1:cds;Parent=Msa1440560-mRNA-1
tig0029093 CDS 16608 17024 16608 ID=Msa1440560-mRNA-1:cds;Parent=Msa1440560-mRNA-1
tig0029093 CDS 16169 16230 16169 ID=Msa1440560-mRNA-1:cds;Parent=Msa1440560-mRNA-1
tig0029093 three_prime_UTR 16083 16168 16083 ID=Msa1440560-mRNA-1:three_prime_utr;Parent=Msa1440560-mRNA-1
Gene Sequence

>Msa1440560

ATGGAGGCAGAGCATGAGAAGAGTGAAGGAGGAGGAGGAGGAGGAGGACTTTATAGCGTGAAAGTTATGACCGATGAACAAATGGAACTTTTAAGACAACAGATATCTGTTTACATCACCATTTCTGATCAGCTTGTTGAGATGCATAAATCTGTTACCACTCAACACGACCTCGCAGGACTGAGACTTGGTAATTTGTACTGTGATCCACTGATGATGGCTTGCTCTGGACACAAGATAACTTCCAGGCAGCGTTGGACTCCAACGCCTATCCAGCTTCAAATACTTGAGCGTATTTTCGATGAAGGCAATGGCACTCCCACCAAACAGAAGATCAAAGACATAACCATTGAACTAGGGCAACACGGTCAAATATCCGAGACTAATGTTTATAATTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGCAAGCAATCATCTGTTACTGCAGGAAATCATGCAGAGCCAGAGGCAGACACAGAAGTTGAGTCTCCAAAAGAGAACAAAACATGTGAAGAAAGCGATCTAGTTCAGTTCTTTGAGAGTTTATCACCTCATCGGGTCAAGGATATGTACATTCAGAGTCCTGACATAGGATTTGAGCACTTGTTGGGAAAAATTGAAGTTGCAGGCTGCTATAATTCTTACTTTCTTTGA

Protein sequence

>Msa1440560

MEAEHEKSEGGGGGGGLYSVKVMTDEQMELLRQQISVYITISDQLVEMHKSVTTQHDLAGLRLGNLYCDPLMMACSGHKITSRQRWTPTPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQSSVTAGNHAEPEADTEVESPKENKTCEESDLVQFFESLSPHRVKDMYIQSPDIGFEHLLGKIEVAGCYNSYFL*