AlfalfaGEDB | Msa1393900

M. sativa cultivar zhongmu-4 / Msa1393900

KEGG: K21026
GO: -
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393900	XP_014517622.1	78.448	464	62	2	12	438	6	468	0.0	745

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393900	sp\|Q3ECP6\|GDL22_ARATH	59.911	449	102	2	16	438	12	408	0.0	554

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393900	A0A1S3VHD5	78.448	464	62	2	12	438	6	468	0.0	745

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0193850	Msa1393900	0.826074	3.311218e-54	-8.615850e-47
Msa0235710	Msa1393900	0.821022	5.035391e-53	-8.615850e-47
Msa0267250	Msa1393900	0.854627	1.085345e-61	-8.615850e-47
Msa0274440	Msa1393900	0.804792	1.822063e-49	-8.615850e-47
Msa0314170	Msa1393900	0.808766	2.635632e-50	-8.615850e-47
Msa1039000	Msa1393900	0.911300	7.104089e-83	-8.615850e-47
Msa1128750	Msa1393900	0.965104	3.564940e-124	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393900	MtrunA17_Chr7g0273101	98.596	356	5	0	83	438	25	380	0.0	727
Msa1393900	MtrunA17_Chr1g0191461	65.871	419	86	5	11	427	7	370	0.0	541
Msa1393900	MtrunA17_Chr8g0381581	48.857	350	169	7	84	427	37	382	2.70e-110	330
Msa1393900	MtrunA17_Chr1g0160101	47.875	353	172	8	84	430	39	385	3.82e-106	320
Msa1393900	MtrunA17_Chr1g0159971	48.011	352	172	7	84	430	44	389	1.49e-105	318
Msa1393900	MtrunA17_Chr7g0271551	46.839	348	160	7	87	432	36	360	5.27e-103	310
Msa1393900	MtrunA17_Chr1g0159981	47.293	351	172	9	81	425	40	383	5.41e-100	304
Msa1393900	MtrunA17_Chr7g0254461	44.193	353	186	7	85	430	41	389	1.92e-99	302
Msa1393900	MtrunA17_Chr1g0160031	46.857	350	171	9	84	427	36	376	2.19e-97	297
Msa1393900	MtrunA17_Chr1g0159991	46.839	348	172	9	84	425	33	373	7.12e-97	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1393900	AT1G54790.3	75.000	356	89	0	83	438	28	383	0.0	585
Msa1393900	AT1G54790.1	63.593	423	102	1	16	438	12	382	0.0	568
Msa1393900	AT1G54790.2	59.911	449	102	2	16	438	12	408	0.0	554
Msa1393900	AT3G05180.1	64.327	342	118	4	84	423	33	372	9.56e-156	446
Msa1393900	AT1G09390.1	49.123	342	156	6	86	425	36	361	2.37e-107	322
Msa1393900	AT1G56670.1	48.387	341	160	6	86	425	39	364	7.06e-106	318
Msa1393900	AT3G26430.1	46.023	352	180	7	84	429	28	375	8.79e-102	308
Msa1393900	AT5G14450.1	43.804	347	183	7	85	425	39	379	8.76e-98	298
Msa1393900	AT3G62280.1	45.161	341	167	6	86	424	35	357	9.60e-97	295
Msa1393900	AT1G67830.1	42.690	342	186	7	84	419	27	364	3.37e-93	286

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Find 124 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCATATTTGGATTCAT+TGG	0.318406	tig0021765:-61480	Msa1393900:CDS
AACTACTTCAAAACTCCAAA+TGG	0.448519	tig0021765:-62922	Msa1393900:CDS
AACTTGAGCTTGAGAAGGAA+TGG	0.518487	tig0021765:+60131	None:intergenic
AAGTAAGTGTGTCCATTTGG+TGG	0.613467	tig0021765:+61669	None:intergenic
AAGTAGTTCTGTCCATAAGG+TGG	0.589355	tig0021765:+62937	None:intergenic
AATAAGCACATTATTATTCT+TGG	0.193684	tig0021765:+63098	None:intergenic
AATACATTCAGGAGGCTTCA+TGG	0.378589	tig0021765:-59923	Msa1393900:three_prime_UTR
AATGCATATTTGGATTCATT+GGG	0.397716	tig0021765:-61479	Msa1393900:CDS
AATTCTTTAACATCATCACA+CGG	0.695860	tig0021765:+59954	None:intergenic
ACACAGGTGAACTTACAGTT+GGG	0.567683	tig0021765:-62978	Msa1393900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACTATCAACCAAATTAAG+TGG	+	tig0021765:59960-59979	None:intergenic	30.0%
CATCTCATACTTTCAAACTA+AGG	-	tig0021765:59992-60011	Msa1393900:three_prime_UTR	30.0%
CAACTTAGGTGATTCAAATT+CGG	-	tig0021765:60128-60147	Msa1393900:CDS	30.0%
AACTACTTCAAAACTCCAAA+TGG	-	tig0021765:60207-60226	Msa1393900:CDS	30.0%
ACAAGGACTAAAAAACATCA+AGG	-	tig0021765:60643-60662	Msa1393900:intron	30.0%
TTCAACAACATTGCACTATT+TGG	+	tig0021765:61085-61104	None:intergenic	30.0%
TGTTTCTTTGTATGTTTGGT+GGG	+	tig0021765:61156-61175	None:intergenic	30.0%
ATGTTTCTTTGTATGTTTGG+TGG	+	tig0021765:61157-61176	None:intergenic	30.0%
GCAAATTATAGATATGATGG+TGG	+	tig0021765:61311-61330	None:intergenic	30.0%
AAACTGCTGGAAAATCTAAA+TGG	+	tig0021765:61375-61394	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021765	gene	59847	63304	59847	ID=Msa1393900;Name=Msa1393900
tig0021765	mRNA	59847	63304	59847	ID=Msa1393900-mRNA-1;Parent=Msa1393900;Name=Msa1393900-mRNA-1;_AED=0.28;_eAED=0.28;_QI=171\|0.8\|0.83\|1\|1\|1\|6\|280\|438
tig0021765	exon	59847	60395	59847	ID=Msa1393900-mRNA-1:exon:14125;Parent=Msa1393900-mRNA-1
tig0021765	exon	60685	60955	60685	ID=Msa1393900-mRNA-1:exon:14124;Parent=Msa1393900-mRNA-1
tig0021765	exon	61069	61235	61069	ID=Msa1393900-mRNA-1:exon:14123;Parent=Msa1393900-mRNA-1
tig0021765	exon	61324	61527	61324	ID=Msa1393900-mRNA-1:exon:14122;Parent=Msa1393900-mRNA-1
tig0021765	exon	61616	61771	61616	ID=Msa1393900-mRNA-1:exon:14121;Parent=Msa1393900-mRNA-1
tig0021765	exon	62884	63304	62884	ID=Msa1393900-mRNA-1:exon:14120;Parent=Msa1393900-mRNA-1
tig0021765	five_prime_UTR	63134	63304	63134	ID=Msa1393900-mRNA-1:five_prime_utr;Parent=Msa1393900-mRNA-1
tig0021765	CDS	62884	63133	62884	ID=Msa1393900-mRNA-1:cds;Parent=Msa1393900-mRNA-1
tig0021765	CDS	61616	61771	61616	ID=Msa1393900-mRNA-1:cds;Parent=Msa1393900-mRNA-1
tig0021765	CDS	61324	61527	61324	ID=Msa1393900-mRNA-1:cds;Parent=Msa1393900-mRNA-1
tig0021765	CDS	61069	61235	61069	ID=Msa1393900-mRNA-1:cds;Parent=Msa1393900-mRNA-1
tig0021765	CDS	60685	60955	60685	ID=Msa1393900-mRNA-1:cds;Parent=Msa1393900-mRNA-1
tig0021765	CDS	60127	60395	60127	ID=Msa1393900-mRNA-1:cds;Parent=Msa1393900-mRNA-1
tig0021765	three_prime_UTR	59847	60126	59847	ID=Msa1393900-mRNA-1:three_prime_utr;Parent=Msa1393900-mRNA-1

Gene Sequence

>Msa1393900

ATGGCGGGTGATTCCAAGAATAATAATGTGCTTATTATTATTCATGTTGTGTTATTTTGCACATGTTTGGAAGTGGCAAATTCAGTTGAGTTCAATTTTCCAGCAGTTTTCAACTTAGGTGATTCAAATTCGGACACAGGTGAACTTACAGTTGGGTTGGGCTTTCAGCTTGTTCCACCTTATGGACAGAACTACTTCAAAACTCCAAATGGAAGGGCATGTGATGGCCGTCTCATTGTTGACTTCCTAAATTTTCCAGCAGTTTTTAACTTTGGTGATTCAAATTCCGACACCGGCACCCTTGTTACCGCTGGTTTTGAAAGCCTTTACCCACCAAATGGACACACTTACTTTCATCTACCATCAGGGAGATACTCTGATGGCCGTCTCATCATTGATTTTCTTATGGATGCATTGGATTTGCCATTCTTAAATGCATATTTGGATTCATTGGGTTTGCCAAATTTTAGGAAAGGTTGTAACTTTGCAGCAGCTGGTTCAACTATCCTTCCAGCCACTGCATCATCCCTCTGCCCTTTCTCCTTTGGGATTCAGGTGTCTCAGTTCCTCAAGTTCAAAGCTCGCGCTCTTGAATTGCTTGCAGGAAAAGGTAGAAAATTCGATAAGTATGTCCCGAGCGAAGATATTTTTGAGAAAGGATTATACATGTTTGACATTGGCCAGAATGATCTTGCTGGTGCATTTTATTCAAAAACTTTGGACCAAGTACTTGCCTCCATTCCAACAATTCTTTTAGAATTTGAATCTGGAATTAAGAGACTATATGATGAGGGGGCTAGATATTTCTGGATACACAATACAGGTCCTCTGGGATGCTTGGCTCAGAATGTAGCCAAATTTGGAACTGATCCATCAAAGCTTGATGAACTAGGATGTGTTAGTGGGCATAACCAAGCTGCTAAAACCTTTAACCTACAACTTCATGCTCTGTGTAGTAAATTGCAGGGTCAATATCCAGATTCAAATGTCACATATGTTGATATCTTCACTATAAAATCAAACCTCATTGCAAATTATTCTAGATACGGGTTTGAACAACCTATTATGGCATGTTGTGGATATGGAGGTCCACCATTGAACTATGACAGTAGAGTGACTTGTGGGAACACAAAGACCTTCAATGGAACGACAATTACAGCAAAAGGTTGTAATGACAGTTCTGAGTATATCAACTGGGATGGAATTCATTACACTGAGACTGCAAATCAATATGTTGCATCACAGATTCTCACTGGAAAATACTCTGACCCTCCTTTCTCAGACAAAATGCCATTCCTTCTCAAGCTCAAGTTCTAA

Protein sequence

>Msa1393900

MAGDSKNNNVLIIIHVVLFCTCLEVANSVEFNFPAVFNLGDSNSDTGELTVGLGFQLVPPYGQNYFKTPNGRACDGRLIVDFLNFPAVFNFGDSNSDTGTLVTAGFESLYPPNGHTYFHLPSGRYSDGRLIIDFLMDALDLPFLNAYLDSLGLPNFRKGCNFAAAGSTILPATASSLCPFSFGIQVSQFLKFKARALELLAGKGRKFDKYVPSEDIFEKGLYMFDIGQNDLAGAFYSKTLDQVLASIPTILLEFESGIKRLYDEGARYFWIHNTGPLGCLAQNVAKFGTDPSKLDELGCVSGHNQAAKTFNLQLHALCSKLQGQYPDSNVTYVDIFTIKSNLIANYSRYGFEQPIMACCGYGGPPLNYDSRVTCGNTKTFNGTTITAKGCNDSSEYINWDGIHYTETANQYVASQILTGKYSDPPFSDKMPFLLKLKF*