AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013040 MtrunA17_Chr1g0162191 93.407 182 12 0 1 182 1 182 6.13e-122 352
Msa0013040 MtrunA17_Chr1g0162191 94.318 88 5 0 181 268 271 358 2.48e-50 169
Msa0013040 MtrunA17_Chr5g0420951 54.237 177 75 2 8 179 9 184 5.19e-60 194
Msa0013040 MtrunA17_Chr5g0420951 48.810 84 42 1 181 264 276 358 1.21e-18 84.3
Msa0013040 MtrunA17_Chr8g0375671 55.114 176 71 3 11 179 12 186 6.99e-60 194
Msa0013040 MtrunA17_Chr8g0375671 60.920 87 33 1 181 267 278 363 5.89e-24 99.4
Msa0013040 MtrunA17_Chr8g0375601 59.509 163 63 2 20 179 19 181 4.55e-59 192
Msa0013040 MtrunA17_Chr8g0375601 51.765 85 40 1 181 265 273 356 1.64e-20 89.7
Msa0013040 MtrunA17_Chr8g0365241 55.618 178 72 3 7 179 13 188 5.54e-59 191
Msa0013040 MtrunA17_Chr8g0365241 52.500 80 38 0 181 260 280 359 6.42e-21 90.9
Msa0013040 MtrunA17_Chr8g0375641 57.407 162 61 3 11 165 12 172 5.81e-58 183
Msa0013040 MtrunA17_Chr5g0420981 53.631 179 77 2 6 179 7 184 2.29e-56 184
Msa0013040 MtrunA17_Chr5g0420981 51.250 80 39 0 181 260 276 355 1.24e-20 90.1
Msa0013040 MtrunA17_Chr5g0423251 51.685 178 78 3 7 179 3 177 3.14e-56 184
Msa0013040 MtrunA17_Chr5g0423251 51.724 87 41 1 181 267 269 354 2.03e-20 89.4
Msa0013040 MtrunA17_Chr8g0375661 56.604 159 61 3 11 162 12 169 6.41e-56 177
Msa0013040 MtrunA17_Chr5g0423191 53.107 177 75 3 8 179 4 177 6.87e-56 183
Msa0013040 MtrunA17_Chr5g0423191 55.294 85 37 1 181 265 269 352 1.09e-22 95.5
Msa0013040 MtrunA17_Chr5g0421041 51.685 178 76 4 7 179 3 175 1.16e-55 182
Msa0013040 MtrunA17_Chr5g0421041 55.172 87 38 1 181 267 267 352 9.22e-24 98.6
Msa0013040 MtrunA17_Chr5g0421011 53.107 177 75 3 8 179 4 177 1.36e-55 182
Msa0013040 MtrunA17_Chr5g0421011 52.326 86 40 1 181 266 269 353 3.08e-19 85.9
Msa0013040 MtrunA17_Chr8g0375571 51.977 177 77 3 10 179 4 179 3.06e-55 181
Msa0013040 MtrunA17_Chr8g0375571 51.765 85 41 0 181 265 271 355 2.86e-22 94.4
Msa0013040 MtrunA17_Chr5g0421101 49.432 176 81 3 9 179 5 177 3.94e-55 181
Msa0013040 MtrunA17_Chr5g0421101 48.810 84 42 1 181 264 269 351 2.76e-17 80.5
Msa0013040 MtrunA17_Chr5g0423201 49.718 177 80 4 9 179 5 178 8.46e-54 177
Msa0013040 MtrunA17_Chr5g0423201 54.762 84 37 1 181 264 270 352 9.82e-19 84.7
Msa0013040 MtrunA17_Chr2g0314401 47.283 184 91 2 1 179 1 183 1.04e-52 175
Msa0013040 MtrunA17_Chr2g0314401 50.000 78 39 0 181 258 275 352 3.51e-20 88.6
Msa0013040 MtrunA17_Chr2g0314391 48.370 184 89 2 1 179 20 202 1.97e-52 175
Msa0013040 MtrunA17_Chr2g0314391 52.941 85 39 1 181 265 294 377 3.63e-22 94.4
Msa0013040 MtrunA17_Chr5g0423221 48.295 176 83 3 9 179 29 201 2.20e-52 174
Msa0013040 MtrunA17_Chr5g0423221 53.846 78 36 0 181 258 294 371 5.19e-18 82.8
Msa0013040 MtrunA17_Chr5g0420901 50.282 177 79 4 9 179 3 176 2.65e-51 171
Msa0013040 MtrunA17_Chr5g0420901 47.170 106 52 2 159 264 249 350 2.27e-23 97.4
Msa0013040 MtrunA17_Chr5g0421091 49.143 175 81 3 10 179 4 175 2.98e-51 171
Msa0013040 MtrunA17_Chr5g0421091 50.000 84 41 1 181 264 268 350 1.28e-19 87.0
Msa0013040 MtrunA17_Chr5g0420941 49.143 175 81 3 10 179 4 175 5.02e-51 170
Msa0013040 MtrunA17_Chr5g0420941 55.844 77 34 0 181 257 267 343 6.42e-20 87.8
Msa0013040 MtrunA17_Chr2g0314381 48.023 177 85 2 9 179 34 209 2.13e-49 167
Msa0013040 MtrunA17_Chr2g0314381 45.882 85 45 1 181 265 301 384 3.33e-18 83.2
Msa0013040 MtrunA17_Chr5g0420891 53.125 160 66 4 9 162 3 159 1.57e-48 158
Msa0013040 MtrunA17_Chr5g0423211 48.876 178 80 4 10 179 6 180 3.20e-48 163
Msa0013040 MtrunA17_Chr5g0423211 57.831 83 33 2 181 263 272 352 4.29e-22 94.0
Msa0013040 MtrunA17_Chr2g0314371 43.478 207 88 3 1 179 1 206 9.41e-48 161
Msa0013040 MtrunA17_Chr8g0375591 55.118 127 50 2 11 130 5 131 2.46e-40 136
Msa0013040 MtrunA17_Chr3g0087031 40.323 186 99 5 1 179 10 190 1.14e-33 125
Msa0013040 MtrunA17_Chr8g0375701 39.375 160 92 4 22 180 30 185 2.38e-31 119
Msa0013040 MtrunA17_Chr8g0375701 41.096 73 43 0 181 253 276 348 7.92e-12 64.7
Msa0013040 MtrunA17_Chr8g0375681 54.000 100 46 0 80 179 15 114 3.78e-31 117
Msa0013040 MtrunA17_Chr8g0375681 54.023 87 39 1 181 267 206 291 1.20e-20 89.0
Msa0013040 MtrunA17_Chr2g0296371 39.130 161 92 3 22 179 27 184 6.28e-31 118
Msa0013040 MtrunA17_Chr7g0239821 38.728 173 98 4 1 168 14 183 2.42e-30 116
Msa0013040 MtrunA17_Chr7g0239101 36.527 167 99 2 8 169 11 175 1.11e-28 112
Msa0013040 MtrunA17_Chr7g0232161 34.742 213 122 6 1 204 10 214 5.19e-28 109
Msa0013040 MtrunA17_Chr7g0239111 34.831 178 101 4 8 176 11 182 5.92e-27 107
Msa0013040 MtrunA17_Chr7g0239121 34.270 178 101 5 1 169 1 171 1.24e-25 103
Msa0013040 MtrunA17_Chr5g0420881 48.113 106 51 2 159 264 46 147 2.77e-25 97.8
Msa0013040 MtrunA17_Chr5g0437181 36.184 152 95 1 22 171 24 175 3.01e-25 102
Msa0013040 MtrunA17_Chr5g0420721 58.824 85 34 1 181 265 171 254 7.72e-24 97.1
Msa0013040 MtrunA17_Chr5g0420721 52.000 75 36 0 105 179 5 79 1.23e-23 96.7
Msa0013040 MtrunA17_Chr3g0145171 39.535 129 78 0 47 175 52 180 2.64e-23 97.4
Msa0013040 MtrunA17_Chr7g0242551 34.839 155 95 2 20 168 23 177 3.12e-23 97.1
Msa0013040 MtrunA17_Chr3g0113641 30.872 149 101 1 22 168 25 173 2.40e-22 94.7
Msa0013040 MtrunA17_Chr7g0239091 34.356 163 90 5 11 168 119 269 1.55e-20 90.5
Msa0013040 MtrunA17_Chr4g0006371 31.098 164 98 2 20 168 22 185 3.56e-20 89.0
Msa0013040 MtrunA17_Chr2g0314361 48.101 79 41 0 182 260 1 79 1.86e-19 80.5
Msa0013040 MtrunA17_Chr5g0420731 51.807 83 32 3 6 83 2 81 3.24e-19 80.5
Msa0013040 MtrunA17_Chr5g0398291 31.579 171 109 3 20 182 16 186 1.42e-15 75.5
Msa0013040 MtrunA17_Chr8g0370721 32.520 123 83 0 46 168 51 173 1.64e-15 75.5
Msa0013040 MtrunA17_Chr7g0250511 28.877 187 122 4 16 195 18 200 2.30e-15 75.1
Msa0013040 MtrunA17_Chr8g0370711 32.283 127 84 1 46 170 51 177 4.85e-15 73.9
Msa0013040 MtrunA17_Chr3g0128001 29.167 168 112 4 13 179 5 166 2.62e-14 71.6
Msa0013040 MtrunA17_Chr4g0064781 31.618 136 89 1 40 175 43 174 8.62e-13 67.4
Msa0013040 MtrunA17_Chr5g0426891 31.056 161 98 5 20 175 13 165 9.17e-13 67.4
Msa0013040 MtrunA17_Chr3g0109041 30.909 165 105 5 20 179 18 178 1.91e-12 66.6
Msa0013040 MtrunA17_Chr3g0125201 32.164 171 101 5 47 214 3 161 3.92e-12 65.1
Msa0013040 MtrunA17_Chr1g0162321 32.278 158 75 6 47 179 69 219 4.48e-12 65.5
Msa0013040 MtrunA17_Chr1g0162351 32.911 158 74 7 47 179 69 219 6.69e-12 65.1
Msa0013040 MtrunA17_Chr3g0145181 32.530 166 99 5 14 168 10 173 9.75e-12 64.3
Msa0013040 MtrunA17_Chr5g0424201 25.862 174 121 4 10 180 7 175 1.01e-11 64.3
Msa0013040 MtrunA17_Chr7g0265221 30.814 172 99 6 20 179 35 198 1.60e-11 63.9
Msa0013040 MtrunA17_Chr7g0239071 34.021 97 63 1 72 168 24 119 1.92e-11 63.2
Msa0013040 MtrunA17_Chr8g0336781 28.571 112 77 2 47 155 95 206 5.83e-11 62.4
Msa0013040 MtrunA17_Chr2g0311921 25.904 166 116 5 47 209 54 215 7.26e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013040 AT1G17020.1 46.703 182 91 1 1 176 1 182 6.07e-51 171
Msa0013040 AT1G17020.1 44.444 81 44 1 181 261 279 358 4.38e-13 68.9
Msa0013040 AT4G25300.1 46.154 182 91 2 1 176 1 181 2.90e-50 169
Msa0013040 AT4G25300.1 45.679 81 43 1 181 261 277 356 6.06e-16 77.0
Msa0013040 AT1G17010.1 45.902 183 92 2 1 176 1 183 1.39e-48 164
Msa0013040 AT1G17010.1 44.048 84 46 1 181 264 279 361 1.01e-14 73.6
Msa0013040 AT1G78550.1 41.398 186 103 1 1 180 1 186 1.33e-43 151
Msa0013040 AT1G78550.1 42.667 75 43 0 181 255 277 351 6.09e-14 71.2
Msa0013040 AT4G25310.2 43.850 187 93 4 1 180 1 182 1.55e-41 145
Msa0013040 AT4G25310.2 48.148 81 41 1 181 261 246 325 3.77e-17 80.1
Msa0013040 AT4G25310.1 43.850 187 93 4 1 180 1 182 3.57e-41 145
Msa0013040 AT4G25310.1 48.148 81 41 1 181 261 274 353 5.58e-17 80.1
Msa0013040 AT3G55970.2 31.140 228 140 5 16 238 18 233 3.06e-27 107
Msa0013040 AT3G21420.1 37.805 164 97 2 21 179 26 189 4.54e-27 108
Msa0013040 AT3G55970.1 31.140 228 140 5 16 238 18 233 8.96e-27 107
Msa0013040 AT3G55970.1 37.500 80 50 0 179 258 280 359 6.88e-11 62.4
Msa0013040 AT2G38240.1 36.310 168 96 4 16 176 11 174 5.29e-26 105
Msa0013040 AT2G38240.1 40.698 86 49 2 178 262 269 353 8.41e-11 62.0
Msa0013040 AT5G05600.2 31.788 151 101 1 20 168 35 185 2.91e-23 96.7
Msa0013040 AT5G05600.1 31.788 151 101 1 20 168 35 185 9.10e-23 96.3
Msa0013040 AT1G78550.2 43.269 104 59 0 77 180 5 108 9.62e-23 94.7
Msa0013040 AT1G78550.2 41.975 81 46 1 181 261 199 278 3.69e-14 71.2
Msa0013040 AT5G20400.1 32.934 167 105 3 14 173 6 172 9.62e-22 93.2
Msa0013040 AT5G20550.1 32.086 187 105 5 14 189 6 181 1.50e-21 92.8
Msa0013040 AT1G49390.1 30.178 169 111 3 14 175 6 174 9.59e-20 87.8
Msa0013040 AT3G11180.1 34.839 155 91 4 20 168 64 214 8.26e-19 85.5
Msa0013040 AT3G11180.2 34.839 155 91 4 20 168 64 214 8.92e-19 85.5
Msa0013040 AT4G25300.2 45.679 81 43 1 181 261 183 262 4.68e-16 76.3
Msa0013040 AT5G54000.2 30.723 166 107 3 16 173 8 173 5.30e-16 77.0
Msa0013040 AT4G22880.1 30.357 168 108 3 22 180 17 184 2.14e-15 75.5
Msa0013040 AT4G22880.2 30.357 168 108 3 22 180 17 184 2.14e-15 75.5
Msa0013040 AT4G22880.3 30.357 168 108 3 22 180 17 184 2.14e-15 75.5
Msa0013040 AT5G24530.1 30.625 160 104 4 21 179 13 166 1.83e-14 72.8
Msa0013040 AT5G08640.2 26.627 169 115 4 22 186 18 181 1.63e-12 67.0
Msa0013040 AT5G08640.1 26.627 169 115 4 22 186 18 181 1.63e-12 67.0
Msa0013040 AT1G55290.1 34.188 117 70 3 42 156 57 168 4.02e-11 63.2
Msa0013040 AT3G19010.3 29.518 166 98 4 32 180 9 172 9.53e-11 61.6

Find 56 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATATTTCCACTCCATTC+TGG 0.128828 1_1:-20183087 None:intergenic
CTGAATGGCAGTGGTAAATT+AGG 0.179197 1_1:-20180589 None:intergenic
AGTCTTTGATGTCTTCATTT+TGG 0.184404 1_1:-20183239 None:intergenic
CTAATTTACCACTGCCATTC+AGG 0.237651 1_1:+20180590 Msa0013040:CDS
TATGGAAGGGTTTGGTAAAA+TGG 0.244933 1_1:+20180477 Msa0013040:CDS
TGAACAATGCTGGTGTTTCT+AGG 0.295424 1_1:-20183131 None:intergenic
CAAAGAATGGGGTTTCTTCC+AGG 0.331953 1_1:+20178442 Msa0013040:CDS
ATATCAAGCTTCTCCAATTC+AGG 0.337053 1_1:-20178413 None:intergenic
TTATATTTCCACTCCATTCT+GGG 0.376355 1_1:-20183086 None:intergenic
TCACTCTTCCTTCCCACTTA+AGG 0.381344 1_1:+20180551 Msa0013040:CDS
TATAAGAACATAAATGTTCA+TGG 0.396892 1_1:-20181047 None:intergenic
CCAGCATTGTTCAAAACAAT+TGG 0.399873 1_1:+20183141 Msa0013040:CDS
TTGGCAGAAACCAGGAGATA+TGG 0.406324 1_1:+20180459 Msa0013040:CDS
TGATATTGCATGCAAAGAAT+GGG 0.421827 1_1:+20178430 Msa0013040:CDS
TTGATATTGCATGCAAAGAA+TGG 0.429762 1_1:+20178429 Msa0013040:CDS
AGAAGTGAAGGGTCCTGAAT+TGG 0.432567 1_1:+20178400 Msa0013040:CDS
TGAATGGCAGTGGTAAATTA+GGG 0.446061 1_1:-20180588 None:intergenic
CCAGGAGATATGGAAGGGTT+TGG 0.447241 1_1:+20180469 Msa0013040:CDS
CCAAACCCTTCCATATCTCC+TGG 0.454886 1_1:-20180469 None:intergenic
CAGACATAGCATGGAAATGC+TGG 0.455219 1_1:+20180375 Msa0013040:CDS
TGGAAGAGAAGAGTAAGCTT+TGG 0.469838 1_1:+20180440 Msa0013040:CDS
GAACAATGCTGGTGTTTCTA+GGG 0.473970 1_1:-20183130 None:intergenic
AGGGTTACAAGAGATGATAT+TGG 0.477345 1_1:-20183111 None:intergenic
AGAGAGGATCCTAATTCTCC+TGG 0.478435 1_1:-20178239 None:intergenic
TCCTTACGCACATATCTCTC+TGG 0.485341 1_1:-20178296 None:intergenic
TTACTTTCAGCAGAAAATCA+TGG 0.500440 1_1:+20183186 Msa0013040:CDS
AATAAATCTACCCAGTCTAA+TGG 0.500491 1_1:-20180520 None:intergenic
CTGCTTAATTCTTTCACAGA+AGG 0.500962 1_1:-20178269 None:intergenic
TCTGTGTTAGACACAATTGT+AGG 0.509129 1_1:-20178329 None:intergenic
CTTCAGACAATAATTTGCTA+AGG 0.509250 1_1:-20178379 None:intergenic
TACTTTCAGCAGAAAATCAT+GGG 0.521204 1_1:+20183187 Msa0013040:CDS
ATAAGTGAGGCTTCCTTAAG+TGG 0.528349 1_1:-20180564 None:intergenic
ATGAAGATGAGCCATTAGAC+TGG 0.528866 1_1:+20180509 Msa0013040:CDS
ATTATTGTCTGAAGAAGTGA+AGG 0.532195 1_1:+20178388 Msa0013040:CDS
ATGCTGGAAGATGTGAAGAT+AGG 0.546596 1_1:+20180391 Msa0013040:CDS
AGTAAGCTTTGGCAGAAACC+AGG 0.549660 1_1:+20180451 Msa0013040:CDS
TGGGCCGTAAAATGCTGCTA+TGG 0.552991 1_1:-20183067 None:intergenic
AAGATAGAAGAACACCTGAA+TGG 0.564080 1_1:-20180604 None:intergenic
TTGTAACAGATAGTGACAAA+TGG 0.565859 1_1:+20182988 Msa0013040:intron
GATTAATCACAGACATAGCA+TGG 0.567172 1_1:+20180366 Msa0013040:CDS
GGTGTAGCAGATTTCTACAA+GGG 0.580739 1_1:+20183162 Msa0013040:CDS
GAAGAACACCTGAATGGCAG+TGG 0.583488 1_1:-20180598 None:intergenic
CTGTGTTAGACACAATTGTA+GGG 0.583831 1_1:-20178328 None:intergenic
TCCAGAGAGATATGTGCGTA+AGG 0.594110 1_1:+20178295 Msa0013040:CDS
TGGTGTAGCAGATTTCTACA+AGG 0.600779 1_1:+20183161 Msa0013040:CDS
CAGAAACCAGGAGATATGGA+AGG 0.607847 1_1:+20180463 Msa0013040:CDS
TGAGGCTTCCTTAAGTGGGA+AGG 0.612791 1_1:-20180559 None:intergenic
GATATTGCATGCAAAGAATG+GGG 0.620482 1_1:+20178431 Msa0013040:CDS
AATTTGCTAAGGTCAATGAC+AGG 0.624672 1_1:-20178368 None:intergenic
TAAGTGAGGCTTCCTTAAGT+GGG 0.635954 1_1:-20180563 None:intergenic
GTGTAGCAGATTTCTACAAG+GGG 0.642062 1_1:+20183163 Msa0013040:CDS
TGAAGATGAGCCATTAGACT+GGG 0.644136 1_1:+20180510 Msa0013040:CDS
AGAAACCAGGAGATATGGAA+GGG 0.659137 1_1:+20180464 Msa0013040:CDS
AGGTCAATGACAGGAAGCTG+TGG 0.662360 1_1:-20178359 None:intergenic
GGTAAATTAGGGAATAAGTG+AGG 0.677705 1_1:-20180577 None:intergenic
TTATTGTCTGAAGAAGTGAA+GGG 0.726279 1_1:+20178389 Msa0013040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTTATAATAAATAT+TGG - chr1_1:20179105-20179124 None:intergenic 0.0%
!!! ATATTTATTTTAAAAAAAAA+AGG - chr1_1:20180635-20180654 None:intergenic 0.0%
!!! AATTAATTATTTATTTTTTT+AGG + chr1_1:20182940-20182959 Msa0013040:intron 0.0%
!!! ATTAATTATTTATTTTTTTA+GGG + chr1_1:20182941-20182960 Msa0013040:intron 0.0%
!!! TCTTTTTTTTTTTTTTTTTG+TGG - chr1_1:20178668-20178687 None:intergenic 10.0%
!!! TAGAGTTTTTTTTTTTTTTT+AGG + chr1_1:20178819-20178838 Msa0013040:intron 10.0%
!!! AGAGTTTTTTTTTTTTTTTA+GGG + chr1_1:20178820-20178839 Msa0013040:intron 10.0%
!!! ATTTTTGTTGATAATTTATA+GGG - chr1_1:20179437-20179456 None:intergenic 10.0%
!!! AATTTTTGTTGATAATTTAT+AGG - chr1_1:20179438-20179457 None:intergenic 10.0%
!!! TTTTTTTTTGCTTATAATTT+GGG - chr1_1:20179923-20179942 None:intergenic 10.0%
!!! ATTTTTTTTTGCTTATAATT+TGG - chr1_1:20179924-20179943 None:intergenic 10.0%
!!! ATATTACACAATTTAATTTA+GGG - chr1_1:20180251-20180270 None:intergenic 10.0%
!!! TATATTACACAATTTAATTT+AGG - chr1_1:20180252-20180271 None:intergenic 10.0%
!! TGATAATAATTAGTTAATAT+TGG + chr1_1:20180974-20180993 Msa0013040:intron 10.0%
!!! TTTTTTTTTGACTAAAAAAA+TGG + chr1_1:20181486-20181505 Msa0013040:intron 10.0%
!!! TTGTTATTTGACTTATTTTT+AGG + chr1_1:20178532-20178551 Msa0013040:intron 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG - chr1_1:20178665-20178684 None:intergenic 15.0%
!!! TTTTGTGATTCTATTTTAAT+AGG + chr1_1:20178784-20178803 Msa0013040:intron 15.0%
!! TTTATATAAGTTCAATTGTT+TGG + chr1_1:20179158-20179177 Msa0013040:intron 15.0%
!! TCAAATGTTTCAAAAAAAAT+TGG + chr1_1:20179194-20179213 Msa0013040:intron 15.0%
!! ATAAAATATAAATCTCAAGT+TGG + chr1_1:20179273-20179292 Msa0013040:intron 15.0%
!!! CAATTTTTTGAAATTTAACA+GGG - chr1_1:20179375-20179394 None:intergenic 15.0%
!!! AGCAAATTTTGAAATTTATA+GGG - chr1_1:20179469-20179488 None:intergenic 15.0%
!!! TAGCAAATTTTGAAATTTAT+AGG - chr1_1:20179470-20179489 None:intergenic 15.0%
!! TACTATATATAAACAAATGA+AGG + chr1_1:20179526-20179545 Msa0013040:intron 15.0%
!! ACTATATATAAACAAATGAA+GGG + chr1_1:20179527-20179546 Msa0013040:intron 15.0%
!! ACAAAAAAAAAACAAATGAA+GGG + chr1_1:20179555-20179574 Msa0013040:intron 15.0%
!!! AAACTTTTTTGCTTATAATA+TGG + chr1_1:20180161-20180180 Msa0013040:intron 15.0%
!!! AACTTTTTTGCTTATAATAT+GGG + chr1_1:20180162-20180181 Msa0013040:intron 15.0%
!!! AGCTTTTTTTTCTTATAATT+TGG + chr1_1:20180197-20180216 Msa0013040:intron 15.0%
!!! GCTTTTTTTTCTTATAATTT+GGG + chr1_1:20180198-20180217 Msa0013040:intron 15.0%
!! AAATAATCAAATATTTACCA+TGG - chr1_1:20180718-20180737 None:intergenic 15.0%
!! TGAAATAAAATGATATATGT+CGG + chr1_1:20180828-20180847 Msa0013040:intron 15.0%
!! AAATAATTCTTACTCAAAAA+TGG + chr1_1:20181421-20181440 Msa0013040:intron 15.0%
!!! TTGTTTTTTATTTAAAACCA+AGG - chr1_1:20181801-20181820 None:intergenic 15.0%
!!! TTGGTTTTAAATAAAAAACA+AGG + chr1_1:20181800-20181819 Msa0013040:intron 15.0%
!!! TGGTTTTAAATAAAAAACAA+GGG + chr1_1:20181801-20181820 Msa0013040:intron 15.0%
!! ATATTTGTTTGGTAAAATTA+TGG - chr1_1:20182767-20182786 None:intergenic 15.0%
!!! CTAAAATTTTGCATAAAATA+TGG + chr1_1:20182796-20182815 Msa0013040:intron 15.0%
!!! GTTTTTTTTTTTTTTTAGGG+AGG + chr1_1:20178823-20178842 Msa0013040:intron 20.0%
!!! TATATTTTATGATGCACATA+AGG - chr1_1:20179263-20179282 None:intergenic 20.0%
!!! GCAATTTTTTGAAATTTAAC+AGG - chr1_1:20179376-20179395 None:intergenic 20.0%
!! GACAAAAAAAAAACAAATGA+AGG + chr1_1:20179554-20179573 Msa0013040:intron 20.0%
!! GATGTAAAAACAATTTGTAA+TGG + chr1_1:20180026-20180045 Msa0013040:intron 20.0%
!! AATGTAACTCTATAAAATTG+TGG + chr1_1:20180328-20180347 Msa0013040:intron 20.0%
!! TTAAGAGTTTAATATTACCA+TGG + chr1_1:20180698-20180717 Msa0013040:intron 20.0%
!! TATAAGAACATAAATGTTCA+TGG - chr1_1:20181050-20181069 None:intergenic 20.0%
!! ATGAACATTTATGTTCTTAT+AGG + chr1_1:20181049-20181068 Msa0013040:intron 20.0%
!! TGAACATTTATGTTCTTATA+GGG + chr1_1:20181050-20181069 Msa0013040:intron 20.0%
!! AATGATATTAAAGAGTCATT+AGG + chr1_1:20181094-20181113 Msa0013040:intron 20.0%
!!! ATGTTCCATCTTTTTTTATT+TGG - chr1_1:20181252-20181271 None:intergenic 20.0%
!! AAATAAAAAAAGATGGAACA+TGG + chr1_1:20181251-20181270 Msa0013040:intron 20.0%
!!! AGTGATTCATATTTTATATG+TGG + chr1_1:20181334-20181353 Msa0013040:intron 20.0%
!! GAAACTGAAGTTATTAATTA+GGG - chr1_1:20181849-20181868 None:intergenic 20.0%
!! AGAAACTGAAGTTATTAATT+AGG - chr1_1:20181850-20181869 None:intergenic 20.0%
!! CAAAAAGTTATATGAAATAG+CGG + chr1_1:20182427-20182446 Msa0013040:intron 20.0%
!!! TTGTTGTTTTATAAATCCTT+CGG - chr1_1:20182612-20182631 None:intergenic 20.0%
!! AGAGAAATAAGATATTTGTT+TGG - chr1_1:20182778-20182797 None:intergenic 20.0%
!! ATTATGATATACACACAAAA+TGG - chr1_1:20182911-20182930 None:intergenic 20.0%
!! TTTAGGTTTGACTTATTGTT+AGG + chr1_1:20178549-20178568 Msa0013040:intron 25.0%
! TGCATAATATATGCAAAATC+CGG + chr1_1:20178625-20178644 Msa0013040:intron 25.0%
!!! TTTTTTTTTTTTGTGGTGGT+CGG - chr1_1:20178661-20178680 None:intergenic 25.0%
! TTAAACTTACAGTTATGTGT+AGG + chr1_1:20178691-20178710 Msa0013040:intron 25.0%
!!! TGATTCTATTTTAATAGGAG+TGG + chr1_1:20178789-20178808 Msa0013040:intron 25.0%
! TATAAGTTCAATTGTTTGGA+TGG + chr1_1:20179162-20179181 Msa0013040:intron 25.0%
!! TTTTTGCTTATAATTTGGGA+CGG - chr1_1:20179919-20179938 None:intergenic 25.0%
! TTTCTATGAAACTTATTCGA+AGG - chr1_1:20180006-20180025 None:intergenic 25.0%
!! AATTGCATTTAATTTCTCCT+TGG + chr1_1:20180093-20180112 Msa0013040:intron 25.0%
!! TCAAAAAATCATCTTTTCCA+AGG - chr1_1:20180113-20180132 None:intergenic 25.0%
!! AGAACTTTTCAATCTTTCAA+TGG + chr1_1:20180420-20180439 Msa0013040:CDS 25.0%
! AATAAAATGATATATGTCGG+TGG + chr1_1:20180831-20180850 Msa0013040:intron 25.0%
!! TAGTTAATATTGGTTGATAC+AGG + chr1_1:20180984-20181003 Msa0013040:intron 25.0%
!! AGTTAATATTGGTTGATACA+GGG + chr1_1:20180985-20181004 Msa0013040:intron 25.0%
!!! TACTAACAATGAAAGCATTT+GGG - chr1_1:20181294-20181313 None:intergenic 25.0%
!!! ATACTAACAATGAAAGCATT+TGG - chr1_1:20181295-20181314 None:intergenic 25.0%
! AATGCTTTCATTGTTAGTAT+TGG + chr1_1:20181295-20181314 Msa0013040:intron 25.0%
!!! TCTAACCTGTTTTTGTAATT+TGG - chr1_1:20181586-20181605 None:intergenic 25.0%
! GCTATTAACTACTATGATAT+GGG - chr1_1:20181618-20181637 None:intergenic 25.0%
! CATATCATAGTAGTTAATAG+CGG + chr1_1:20181617-20181636 Msa0013040:intron 25.0%
! TTTCACGTAAAATGAAATAG+CGG - chr1_1:20181766-20181785 None:intergenic 25.0%
! CCACAAAAACAACAAAAATA+AGG - chr1_1:20182031-20182050 None:intergenic 25.0%
!!! CCTTATTTTTGTTGTTTTTG+TGG + chr1_1:20182028-20182047 Msa0013040:intron 25.0%
!!! GGTTTGCTATAAAAGTATTT+AGG - chr1_1:20182209-20182228 None:intergenic 25.0%
!!! CGCTATTTCATATAACTTTT+TGG - chr1_1:20182429-20182448 None:intergenic 25.0%
! AACAACCATCATATACATAT+GGG - chr1_1:20182533-20182552 None:intergenic 25.0%
!! CATAGAATTTTGAGCAAATA+GGG - chr1_1:20182566-20182585 None:intergenic 25.0%
!! TCATAGAATTTTGAGCAAAT+AGG - chr1_1:20182567-20182586 None:intergenic 25.0%
! AAATGTGTCTAATATACCTA+GGG - chr1_1:20182684-20182703 None:intergenic 25.0%
! AAAATGTGTCTAATATACCT+AGG - chr1_1:20182685-20182704 None:intergenic 25.0%
!! AGGTATATTAGACACATTTT+TGG + chr1_1:20182685-20182704 Msa0013040:intron 25.0%
!!! AAAATTAAGCCATTTTGGTT+AGG - chr1_1:20182852-20182871 None:intergenic 25.0%
! GTGTATATCATAATTTATCG+TGG + chr1_1:20182917-20182936 Msa0013040:intron 25.0%
!! CTTCAGACAATAATTTGCTA+AGG - chr1_1:20178382-20178401 None:intergenic 30.0%
ATTATTGTCTGAAGAAGTGA+AGG + chr1_1:20178388-20178407 Msa0013040:CDS 30.0%
TTATTGTCTGAAGAAGTGAA+GGG + chr1_1:20178389-20178408 Msa0013040:CDS 30.0%
TTGATATTGCATGCAAAGAA+TGG + chr1_1:20178429-20178448 Msa0013040:CDS 30.0%
TGATATTGCATGCAAAGAAT+GGG + chr1_1:20178430-20178449 Msa0013040:CDS 30.0%
TAGATGCAATTAAACTAACC+TGG - chr1_1:20178463-20178482 None:intergenic 30.0%
ACCTAAGCAAAAGATAAGAA+GGG - chr1_1:20178491-20178510 None:intergenic 30.0%
AACCTAAGCAAAAGATAAGA+AGG - chr1_1:20178492-20178511 None:intergenic 30.0%
GCATAATATATGCAAAATCC+GGG + chr1_1:20178626-20178645 Msa0013040:intron 30.0%
CATAATATATGCAAAATCCG+GGG + chr1_1:20178627-20178646 Msa0013040:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGTC+GGG - chr1_1:20178660-20178679 None:intergenic 30.0%
!! GATGTATGTTATTTCGTCTA+CGG + chr1_1:20178722-20178741 Msa0013040:intron 30.0%
TCTATCCAAACACATTCTAA+AGG + chr1_1:20179635-20179654 Msa0013040:intron 30.0%
TTTGCTTATAATATGGGACA+AGG + chr1_1:20180168-20180187 Msa0013040:intron 30.0%
! TTTCTTATAATTTGGGACAG+AGG + chr1_1:20180205-20180224 Msa0013040:intron 30.0%
! TTCTTATAATTTGGGACAGA+GGG + chr1_1:20180206-20180225 Msa0013040:intron 30.0%
GAGTTACATTACTCTTTGTT+TGG - chr1_1:20180284-20180303 None:intergenic 30.0%
AATAAATCTACCCAGTCTAA+TGG - chr1_1:20180523-20180542 None:intergenic 30.0%
!!! ATGTCGGTGGATTTTTTTAT+CGG + chr1_1:20180844-20180863 Msa0013040:intron 30.0%
CATTTGATCTAACAATCGAA+GGG - chr1_1:20180886-20180905 None:intergenic 30.0%
TCATTTGATCTAACAATCGA+AGG - chr1_1:20180887-20180906 None:intergenic 30.0%
! TTGATACAGGGAAAATTTTG+AGG + chr1_1:20180997-20181016 Msa0013040:intron 30.0%
ATTAAAGAGTCATTAGGAGA+AGG + chr1_1:20181100-20181119 Msa0013040:intron 30.0%
GGACTCCAAATAAAAAAAGA+TGG + chr1_1:20181244-20181263 Msa0013040:intron 30.0%
!! TGTTAGTATTGGAGATGTTT+TGG + chr1_1:20181306-20181325 Msa0013040:intron 30.0%
ATGGATTCTAACTTAAGCAT+TGG + chr1_1:20181505-20181524 Msa0013040:intron 30.0%
TGGATTCTAACTTAAGCATT+GGG + chr1_1:20181506-20181525 Msa0013040:intron 30.0%
TCAAGCCAAATTACAAAAAC+AGG + chr1_1:20181578-20181597 Msa0013040:intron 30.0%
ATTACAAAAACAGGTTAGAC+CGG + chr1_1:20181587-20181606 Msa0013040:intron 30.0%
CGCTATTAACTACTATGATA+TGG - chr1_1:20181619-20181638 None:intergenic 30.0%
TGAAAATACAAGATTCTCCT+TGG + chr1_1:20181781-20181800 Msa0013040:intron 30.0%
CTTCCTTCTTTCATTCTTTA+CGG + chr1_1:20181872-20181891 Msa0013040:intron 30.0%
AGAGAAGATTTAATGAAGAG+AGG - chr1_1:20181939-20181958 None:intergenic 30.0%
!! AAAACAGAGGATGCTTTTTA+GGG - chr1_1:20181981-20182000 None:intergenic 30.0%
TTGTTTGGCAATTTAATCAC+TGG + chr1_1:20182153-20182172 Msa0013040:intron 30.0%
ACTTTGTGAATGTAATGAAG+TGG + chr1_1:20182283-20182302 Msa0013040:intron 30.0%
TATGACCCATATGTATATGA+TGG + chr1_1:20182525-20182544 Msa0013040:intron 30.0%
GAACAACCATCATATACATA+TGG - chr1_1:20182534-20182553 None:intergenic 30.0%
! ACCAAAATGGCTTAATTTTG+TGG + chr1_1:20182853-20182872 Msa0013040:intron 30.0%
! TTTTGATCTTCCATTATAGG+TGG - chr1_1:20182879-20182898 None:intergenic 30.0%
!! CAGTTTTGATCTTCCATTAT+AGG - chr1_1:20182882-20182901 None:intergenic 30.0%
TTGTAACAGATAGTGACAAA+TGG + chr1_1:20182988-20183007 Msa0013040:intron 30.0%
TTATATTTCCACTCCATTCT+GGG - chr1_1:20183089-20183108 None:intergenic 30.0%
TTACTTTCAGCAGAAAATCA+TGG + chr1_1:20183186-20183205 Msa0013040:CDS 30.0%
TACTTTCAGCAGAAAATCAT+GGG + chr1_1:20183187-20183206 Msa0013040:CDS 30.0%
! AGTCTTTGATGTCTTCATTT+TGG - chr1_1:20183242-20183261 None:intergenic 30.0%
GAACAAAAACCAGGAGAATT+AGG + chr1_1:20178230-20178249 Msa0013040:CDS 35.0%
CTGCTTAATTCTTTCACAGA+AGG - chr1_1:20178272-20178291 None:intergenic 35.0%
CTGTGTTAGACACAATTGTA+GGG - chr1_1:20178331-20178350 None:intergenic 35.0%
TCTGTGTTAGACACAATTGT+AGG - chr1_1:20178332-20178351 None:intergenic 35.0%
!! AATTTGCTAAGGTCAATGAC+AGG - chr1_1:20178371-20178390 None:intergenic 35.0%
ATATCAAGCTTCTCCAATTC+AGG - chr1_1:20178416-20178435 None:intergenic 35.0%
GATATTGCATGCAAAGAATG+GGG + chr1_1:20178431-20178450 Msa0013040:CDS 35.0%
CCTAAGCAAAAGATAAGAAG+GGG - chr1_1:20178490-20178509 None:intergenic 35.0%
!!! TTTTTTTTTTGTGGTGGTCG+GGG - chr1_1:20178659-20178678 None:intergenic 35.0%
!! CATGTCCTTTAGAATGTGTT+TGG - chr1_1:20179643-20179662 None:intergenic 35.0%
! CAAACACATTCTAAAGGACA+TGG + chr1_1:20179641-20179660 Msa0013040:intron 35.0%
GATTAATCACAGACATAGCA+TGG + chr1_1:20180366-20180385 Msa0013040:CDS 35.0%
! TATGGAAGGGTTTGGTAAAA+TGG + chr1_1:20180477-20180496 Msa0013040:CDS 35.0%
GGTAAATTAGGGAATAAGTG+AGG - chr1_1:20180580-20180599 None:intergenic 35.0%
TGAATGGCAGTGGTAAATTA+GGG - chr1_1:20180591-20180610 None:intergenic 35.0%
AAGATAGAAGAACACCTGAA+TGG - chr1_1:20180607-20180626 None:intergenic 35.0%
ACAAAGTGAATTTGTGCATG+GGG - chr1_1:20180929-20180948 None:intergenic 35.0%
GACAAAGTGAATTTGTGCAT+GGG - chr1_1:20180930-20180949 None:intergenic 35.0%
AGACAAAGTGAATTTGTGCA+TGG - chr1_1:20180931-20180950 None:intergenic 35.0%
AGTAGTTGACCCTAATTGAT+TGG - chr1_1:20181129-20181148 None:intergenic 35.0%
!!! TTCATTGTTTTGGAGAAGGA+TGG - chr1_1:20181218-20181237 None:intergenic 35.0%
!! ACAATGAAAGCATTTGGGAT+AGG - chr1_1:20181289-20181308 None:intergenic 35.0%
!! TAGTATTGGAGATGTTTTGG+AGG + chr1_1:20181309-20181328 Msa0013040:intron 35.0%
!! ATTCTAACTTAAGCATTGGG+AGG + chr1_1:20181509-20181528 Msa0013040:intron 35.0%
!! TACTATGATATGGGTTAGTC+CGG - chr1_1:20181609-20181628 None:intergenic 35.0%
!! CAAAACAGAGGATGCTTTTT+AGG - chr1_1:20181982-20182001 None:intergenic 35.0%
ATAGAGGATGAACAAAACAG+AGG - chr1_1:20181994-20182013 None:intergenic 35.0%
AACAATGTCGAGATTATCAC+CGG - chr1_1:20182138-20182157 None:intergenic 35.0%
GTGATAATCTCGACATTGTT+TGG + chr1_1:20182138-20182157 Msa0013040:intron 35.0%
TTGGCAATTTAATCACTGGA+AGG + chr1_1:20182157-20182176 Msa0013040:intron 35.0%
! TATCCCGCTATAGCATTTTT+GGG + chr1_1:20182466-20182485 Msa0013040:intron 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG - chr1_1:20182507-20182526 None:intergenic 35.0%
TGGGTCATAGTAGTTAATAG+CGG - chr1_1:20182514-20182533 None:intergenic 35.0%
! AGAATTTTGAGCAAATAGGG+AGG - chr1_1:20182563-20182582 None:intergenic 35.0%
GTTCGATAGATATATACCGA+AGG + chr1_1:20182593-20182612 Msa0013040:intron 35.0%
! TCTTTTGGCCTAAAGCTATT+CGG - chr1_1:20182655-20182674 None:intergenic 35.0%
! TACCTAGGGTTTTTCTCTTT+TGG - chr1_1:20182670-20182689 None:intergenic 35.0%
TTAGGTGTAGACTAATGGTT+AGG - chr1_1:20182834-20182853 None:intergenic 35.0%
TTTGGTTAGGTGTAGACTAA+TGG - chr1_1:20182839-20182858 None:intergenic 35.0%
TAGTCTACACCTAACCAAAA+TGG + chr1_1:20182840-20182859 Msa0013040:intron 35.0%
! GCCACAAAATTAAGCCATTT+TGG - chr1_1:20182857-20182876 None:intergenic 35.0%
! AATTTTGTGGCCACCTATAA+TGG + chr1_1:20182866-20182885 Msa0013040:intron 35.0%
TAGTCAACTCAGAAAAAGAG+AGG + chr1_1:20183040-20183059 Msa0013040:CDS 35.0%
! CTATCCATAGCAGCATTTTA+CGG + chr1_1:20183063-20183082 Msa0013040:CDS 35.0%
CTTATATTTCCACTCCATTC+TGG - chr1_1:20183090-20183109 None:intergenic 35.0%
AGGGTTACAAGAGATGATAT+TGG - chr1_1:20183114-20183133 None:intergenic 35.0%
!!! CCAATTGTTTTGAACAATGC+TGG - chr1_1:20183144-20183163 None:intergenic 35.0%
CCAGCATTGTTCAAAACAAT+TGG + chr1_1:20183141-20183160 Msa0013040:CDS 35.0%
CACAGAAGGAAAAACAAGAG+AGG - chr1_1:20178258-20178277 None:intergenic 40.0%
! CCCCTTCTTATCTTTTGCTT+AGG + chr1_1:20178487-20178506 Msa0013040:intron 40.0%
CATTGTGAACTTAGCTCAGT+TGG + chr1_1:20178592-20178611 Msa0013040:intron 40.0%
! TGAACTTAGCTCAGTTGGTA+TGG + chr1_1:20178597-20178616 Msa0013040:intron 40.0%
! TGCTTATAATTTGGGACGGA+GGG - chr1_1:20179915-20179934 None:intergenic 40.0%
! TTGCTTATAATTTGGGACGG+AGG - chr1_1:20179916-20179935 None:intergenic 40.0%
ATGCTGGAAGATGTGAAGAT+AGG + chr1_1:20180391-20180410 Msa0013040:CDS 40.0%
TGGAAGAGAAGAGTAAGCTT+TGG + chr1_1:20180440-20180459 Msa0013040:CDS 40.0%
AGAAACCAGGAGATATGGAA+GGG + chr1_1:20180464-20180483 Msa0013040:CDS 40.0%
ATGAAGATGAGCCATTAGAC+TGG + chr1_1:20180509-20180528 Msa0013040:CDS 40.0%
TGAAGATGAGCCATTAGACT+GGG + chr1_1:20180510-20180529 Msa0013040:CDS 40.0%
TAAGTGAGGCTTCCTTAAGT+GGG - chr1_1:20180566-20180585 None:intergenic 40.0%
ATAAGTGAGGCTTCCTTAAG+TGG - chr1_1:20180567-20180586 None:intergenic 40.0%
CTGAATGGCAGTGGTAAATT+AGG - chr1_1:20180592-20180611 None:intergenic 40.0%
CTAATTTACCACTGCCATTC+AGG + chr1_1:20180590-20180609 Msa0013040:CDS 40.0%
!! GTTCTTATAGGGAAAGCACT+TGG + chr1_1:20181061-20181080 Msa0013040:intron 40.0%
AAAGAGTCATTAGGAGAAGG+AGG + chr1_1:20181103-20181122 Msa0013040:intron 40.0%
AGAAGGAGGCCAATCAATTA+GGG + chr1_1:20181117-20181136 Msa0013040:intron 40.0%
! CAAGGACATTCTCTGGTTTA+GGG - chr1_1:20181162-20181181 None:intergenic 40.0%
!!! CCACTTCATTGTTTTGGAGA+AGG - chr1_1:20181222-20181241 None:intergenic 40.0%
CCTTCTCCAAAACAATGAAG+TGG + chr1_1:20181219-20181238 Msa0013040:intron 40.0%
CTCCAAAACAATGAAGTGGA+AGG + chr1_1:20181223-20181242 Msa0013040:intron 40.0%
! GTCCTTCCACTTCATTGTTT+TGG - chr1_1:20181228-20181247 None:intergenic 40.0%
! TTTTGTGGACAACACAGTCA+TGG + chr1_1:20182043-20182062 Msa0013040:intron 40.0%
GTTTGATTGAACACCAGAAC+CGG - chr1_1:20182075-20182094 None:intergenic 40.0%
CATGTGCTCAAAGACATAAG+TGG + chr1_1:20182111-20182130 Msa0013040:intron 40.0%
TTGATTGAACACCAGAAGCT+GGG - chr1_1:20182185-20182204 None:intergenic 40.0%
ATTGATTGAACACCAGAAGC+TGG - chr1_1:20182186-20182205 None:intergenic 40.0%
TTGGGATCTGTCTCAATTTC+TGG - chr1_1:20182230-20182249 None:intergenic 40.0%
TGCAAACCTCTCAGCAATTT+GGG - chr1_1:20182248-20182267 None:intergenic 40.0%
ATGCAAACCTCTCAGCAATT+TGG - chr1_1:20182249-20182268 None:intergenic 40.0%
ATGTAATGAAGTGGCAGACT+TGG + chr1_1:20182292-20182311 Msa0013040:intron 40.0%
! AGACTTGGTTACAACTCAGT+TGG + chr1_1:20182307-20182326 Msa0013040:intron 40.0%
! GACTTGGTTACAACTCAGTT+GGG + chr1_1:20182308-20182327 Msa0013040:intron 40.0%
! CTATCCCGCTATAGCATTTT+TGG + chr1_1:20182465-20182484 Msa0013040:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG + chr1_1:20182467-20182486 Msa0013040:intron 40.0%
GTTACGATCCGAATAGCTTT+AGG + chr1_1:20182644-20182663 Msa0013040:intron 40.0%
CACAAGTCTACTCTTGAGTT+AGG + chr1_1:20182736-20182755 Msa0013040:intron 40.0%
! GAACAATGCTGGTGTTTCTA+GGG - chr1_1:20183133-20183152 None:intergenic 40.0%
TGAACAATGCTGGTGTTTCT+AGG - chr1_1:20183134-20183153 None:intergenic 40.0%
TGGTGTAGCAGATTTCTACA+AGG + chr1_1:20183161-20183180 Msa0013040:CDS 40.0%
GGTGTAGCAGATTTCTACAA+GGG + chr1_1:20183162-20183181 Msa0013040:CDS 40.0%
GTGTAGCAGATTTCTACAAG+GGG + chr1_1:20183163-20183182 Msa0013040:CDS 40.0%
AGAGAGGATCCTAATTCTCC+TGG - chr1_1:20178242-20178261 None:intergenic 45.0%
TCCAGAGAGATATGTGCGTA+AGG + chr1_1:20178295-20178314 Msa0013040:CDS 45.0%
TCCTTACGCACATATCTCTC+TGG - chr1_1:20178299-20178318 None:intergenic 45.0%
AGAAGTGAAGGGTCCTGAAT+TGG + chr1_1:20178400-20178419 Msa0013040:CDS 45.0%
CAAAGAATGGGGTTTCTTCC+AGG + chr1_1:20178442-20178461 Msa0013040:CDS 45.0%
GGGACGGAGGGATATATTTA+CGG - chr1_1:20179903-20179922 None:intergenic 45.0%
CAGACATAGCATGGAAATGC+TGG + chr1_1:20180375-20180394 Msa0013040:CDS 45.0%
! AGTAAGCTTTGGCAGAAACC+AGG + chr1_1:20180451-20180470 Msa0013040:CDS 45.0%
TTGGCAGAAACCAGGAGATA+TGG + chr1_1:20180459-20180478 Msa0013040:CDS 45.0%
CAGAAACCAGGAGATATGGA+AGG + chr1_1:20180463-20180482 Msa0013040:CDS 45.0%
TCACTCTTCCTTCCCACTTA+AGG + chr1_1:20180551-20180570 Msa0013040:CDS 45.0%
AAGTGAATTTGTGCATGGGG+TGG - chr1_1:20180926-20180945 None:intergenic 45.0%
GAGAAGGAGGCCAATCAATT+AGG + chr1_1:20181116-20181135 Msa0013040:intron 45.0%
! ACATTCTCTGGTTTAGGGCA+AGG - chr1_1:20181157-20181176 None:intergenic 45.0%
! CCAAGGACATTCTCTGGTTT+AGG - chr1_1:20181163-20181182 None:intergenic 45.0%
CCTAAACCAGAGAATGTCCT+TGG + chr1_1:20181160-20181179 Msa0013040:intron 45.0%
TTGATGAGCTACACTAGGTG+AGG - chr1_1:20181562-20181581 None:intergenic 45.0%
! TTGGCTTGATGAGCTACACT+AGG - chr1_1:20181567-20181586 None:intergenic 45.0%
AGTTAATAGCGGCGCTATAG+CGG + chr1_1:20181628-20181647 Msa0013040:intron 45.0%
TATCTCATAACGCTACGCCA+TGG - chr1_1:20181694-20181713 None:intergenic 45.0%
AAAACCGCTATGCAGTGTTG+CGG - chr1_1:20181732-20181751 None:intergenic 45.0%
GCGCCGTAAAGAATGAAAGA+AGG - chr1_1:20181878-20181897 None:intergenic 45.0%
CAGATGCGTACAGATCTGAA+AGG - chr1_1:20181900-20181919 None:intergenic 45.0%
GGAAACAGAGAGCAGAATAG+AGG - chr1_1:20182010-20182029 None:intergenic 45.0%
GCTCAAAGACATAAGTGGAC+CGG + chr1_1:20182116-20182135 Msa0013040:intron 45.0%
ACAGATCCCAAATTGCTGAG+AGG + chr1_1:20182239-20182258 Msa0013040:intron 45.0%
GACCCCAAAAATGCTATAGC+GGG - chr1_1:20182472-20182491 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG - chr1_1:20182473-20182492 None:intergenic 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG + chr1_1:20182471-20182490 Msa0013040:intron 45.0%
GGCCAAAAGAGAAAAACCCT+AGG + chr1_1:20182665-20182684 Msa0013040:intron 45.0%
!!! AATTTTAAATTCTTATTTTT+AGG - chr1_1:20179240-20179259 None:intergenic 5.0%
!!! TATTCATTTTTTAAAATTTA+GGG - chr1_1:20179499-20179518 None:intergenic 5.0%
!!! TTATTCATTTTTTAAAATTT+AGG - chr1_1:20179500-20179519 None:intergenic 5.0%
!! TATATATATATATATATAGT+TGG + chr1_1:20179802-20179821 Msa0013040:intron 5.0%
AGGTCAATGACAGGAAGCTG+TGG - chr1_1:20178362-20178381 None:intergenic 50.0%
CCAAACCCTTCCATATCTCC+TGG - chr1_1:20180472-20180491 None:intergenic 50.0%
CCAGGAGATATGGAAGGGTT+TGG + chr1_1:20180469-20180488 Msa0013040:CDS 50.0%
TGAGGCTTCCTTAAGTGGGA+AGG - chr1_1:20180562-20180581 None:intergenic 50.0%
GAAGAACACCTGAATGGCAG+TGG - chr1_1:20180601-20180620 None:intergenic 50.0%
ATTTGTGCATGGGGTGGAAG+AGG - chr1_1:20180920-20180939 None:intergenic 50.0%
! TTCTCTGGTTTAGGGCAAGG+AGG - chr1_1:20181154-20181173 None:intergenic 50.0%
TTGAGGCCAAGGACATTCTC+TGG - chr1_1:20181169-20181188 None:intergenic 50.0%
AGAGAATGTCCTTGGCCTCA+AGG + chr1_1:20181168-20181187 Msa0013040:intron 50.0%
GCCTCAAGGCTCATACTGAT+GGG + chr1_1:20181182-20181201 Msa0013040:intron 50.0%
ACCCATCAGTATGAGCCTTG+AGG - chr1_1:20181186-20181205 None:intergenic 50.0%
GACCGCTATGCAATAAGCCA+TGG + chr1_1:20181674-20181693 Msa0013040:intron 50.0%
CGCCATGGCTTATTGCATAG+CGG - chr1_1:20181679-20181698 None:intergenic 50.0%
GGCGTAGCGTTATGAGATAG+CGG + chr1_1:20181695-20181714 Msa0013040:intron 50.0%
! ATGAGATAGCGGCGCAATAG+CGG + chr1_1:20181706-20181725 Msa0013040:intron 50.0%
AACACAGTCATGGCAGCTTC+CGG + chr1_1:20182053-20182072 Msa0013040:intron 50.0%
GAAATAGCGGTCATAGCGCT+AGG + chr1_1:20182440-20182459 Msa0013040:intron 50.0%
TGGGCCGTAAAATGCTGCTA+TGG - chr1_1:20183070-20183089 None:intergenic 50.0%
! CAGCATTTTACGGCCCAGAA+TGG + chr1_1:20183073-20183092 Msa0013040:CDS 50.0%
! TTTTACGGCCCAGAATGGAG+TGG + chr1_1:20183078-20183097 Msa0013040:CDS 50.0%
CAGTATGAGCCTTGAGGCCA+AGG - chr1_1:20181180-20181199 None:intergenic 55.0%
GGCCTCAAGGCTCATACTGA+TGG + chr1_1:20181181-20181200 Msa0013040:intron 55.0%
GGCTTATTGCATAGCGGTCC+TGG - chr1_1:20181673-20181692 None:intergenic 55.0%
ACTGGAAGGATCCCAGCTTC+TGG + chr1_1:20182171-20182190 Msa0013040:intron 55.0%
GTCATGGCAGCTTCCGGTTC+TGG + chr1_1:20182059-20182078 Msa0013040:intron 60.0%
GGTGGTCGGGGTTTGAACCC+CGG - chr1_1:20178647-20178666 None:intergenic 65.0%
GCGGCCGCAACACTGCATAG+CGG + chr1_1:20181725-20181744 Msa0013040:intron 65.0%
! TAGCGGATAGCGGCGCGTAG+CGG - chr1_1:20182497-20182516 None:intergenic 65.0%
GCTATAGCGGCCGCGCGGTG+CGG + chr1_1:20181641-20181660 Msa0013040:intron 75.0%
! GCGGCGCTATAGCGGCCGCG+CGG + chr1_1:20181636-20181655 Msa0013040:intron 80.0%
! CTGGACCGCACCGCACCGCG+CGG - chr1_1:20181654-20181673 None:intergenic 80.0%
! AGCGGCCGCGCGGTGCGGTG+CGG + chr1_1:20181646-20181665 Msa0013040:intron 85.0%
! CGCGCGGTGCGGTGCGGTCC+AGG + chr1_1:20181652-20181671 Msa0013040:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 20178227 20183263 20178227 ID=Msa0013040;Name=Msa0013040
chr1_1 mRNA 20178227 20183263 20178227 ID=Msa0013040-mRNA-1;Parent=Msa0013040;Name=Msa0013040-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.66|0.75|4|0|268
chr1_1 exon 20178227 20178463 20178227 ID=Msa0013040-mRNA-1:exon:7175;Parent=Msa0013040-mRNA-1
chr1_1 exon 20180364 20180611 20180364 ID=Msa0013040-mRNA-1:exon:7176;Parent=Msa0013040-mRNA-1
chr1_1 exon 20181006 20181060 20181006 ID=Msa0013040-mRNA-1:exon:7177;Parent=Msa0013040-mRNA-1
chr1_1 exon 20182997 20183263 20182997 ID=Msa0013040-mRNA-1:exon:7178;Parent=Msa0013040-mRNA-1
chr1_1 CDS 20178227 20178463 20178227 ID=Msa0013040-mRNA-1:cds;Parent=Msa0013040-mRNA-1
chr1_1 CDS 20180364 20180611 20180364 ID=Msa0013040-mRNA-1:cds;Parent=Msa0013040-mRNA-1
chr1_1 CDS 20181006 20181060 20181006 ID=Msa0013040-mRNA-1:cds;Parent=Msa0013040-mRNA-1
chr1_1 CDS 20182997 20183263 20182997 ID=Msa0013040-mRNA-1:cds;Parent=Msa0013040-mRNA-1
Gene Sequence

>Msa0013040

ATGGAACAAAAACCAGGAGAATTAGGATCCTCTCTTGTTTTTCCTTCTGTGAAAGAATTAAGCAGTGTTCCAGAGAGATATGTGCGTAAGGATATTGACTACCCTACAATTGTGTCTAACACAGATTCTTTGCCACAGCTTCCTGTCATTGACCTTAGCAAATTATTGTCTGAAGAAGTGAAGGGTCCTGAATTGGAGAAGCTTGATATTGCATGCAAAGAATGGGGTTTCTTCCAGCTGATTAATCACAGACATAGCATGGAAATGCTGGAAGATGTGAAGATAGGTGCTCGAGAACTTTTCAATCTTTCAATGGAAGAGAAGAGTAAGCTTTGGCAGAAACCAGGAGATATGGAAGGGTTTGGTAAAATGGTTGATGTGTATGAAGATGAGCCATTAGACTGGGTAGATTTATTCTACATTTTCACTCTTCCTTCCCACTTAAGGAAGCCTCACTTATTCCCTAATTTACCACTGCCATTCAGGGAAAATTTTGAGGCTTATTGTATAAAGAATAGAGAACTTGCCATGAACATTTATATAGTGACAAATGGTATATATAAGAGCACGACACACAGAGCTATAGTCAACTCAGAAAAAGAGAGGCTATCCATAGCAGCATTTTACGGCCCAGAATGGAGTGGAAATATAAGTCCAATATCATCTCTTGTAACCCTAGAAACACCAGCATTGTTCAAAACAATTGGTGTAGCAGATTTCTACAAGGGGTTACTTTCAGCAGAAAATCATGGGAAATCATACATACATGATGTTTTGATGATCCAAAATGAAGACATCAAAGACTAG
Protein sequence

>Msa0013040

MEQKPGELGSSLVFPSVKELSSVPERYVRKDIDYPTIVSNTDSLPQLPVIDLSKLLSEEVKGPELEKLDIACKEWGFFQLINHRHSMEMLEDVKIGARELFNLSMEEKSKLWQKPGDMEGFGKMVDVYEDEPLDWVDLFYIFTLPSHLRKPHLFPNLPLPFRENFEAYCIKNRELAMNIYIVTNGIYKSTTHRAIVNSEKERLSIAAFYGPEWSGNISPISSLVTLETPALFKTIGVADFYKGLLSAENHGKSYIHDVLMIQNEDIKD*