Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1394600 | XP_003607550.1 | 98.489 | 331 | 2 | 1 | 1 | 331 | 1 | 328 | 0.0 | 669 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1394600 | sp|Q9M2K4|BZP61_ARATH | 55.556 | 351 | 114 | 12 | 1 | 331 | 1 | 329 | 5.22e-103 | 308 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1394600 | G8A005 | 98.489 | 331 | 2 | 1 | 1 | 331 | 1 | 328 | 0.0 | 669 |
Gene ID | Type | Classification |
---|---|---|
Msa1394600 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0608660 | Msa1394600 | 0.994473 | 1.531638e-207 | -8.615850e-47 |
Msa0649190 | Msa1394600 | 0.973198 | 5.044557e-136 | -8.615850e-47 |
Msa0122940 | Msa1394600 | 0.805645 | 1.207957e-49 | -8.615850e-47 |
Msa0328400 | Msa1394600 | 0.814470 | 1.515798e-51 | -8.615850e-47 |
Msa0328410 | Msa1394600 | 0.825205 | 5.321165e-54 | -8.615850e-47 |
Msa0555090 | Msa1394600 | 0.977333 | 1.429677e-143 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1394600 | MtrunA17_Chr4g0040891 | 98.489 | 331 | 2 | 1 | 1 | 331 | 1 | 328 | 0.0 | 669 |
Msa1394600 | MtrunA17_Chr2g0325131 | 62.791 | 344 | 92 | 13 | 1 | 330 | 1 | 322 | 4.89e-119 | 347 |
Msa1394600 | MtrunA17_Chr2g0316551 | 51.420 | 352 | 118 | 16 | 1 | 316 | 1 | 335 | 3.61e-90 | 273 |
Msa1394600 | MtrunA17_Chr8g0380611 | 52.941 | 102 | 43 | 1 | 191 | 292 | 228 | 324 | 1.23e-23 | 100 |
Msa1394600 | MtrunA17_Chr5g0432701 | 48.387 | 93 | 48 | 0 | 197 | 289 | 159 | 251 | 4.41e-20 | 89.7 |
Msa1394600 | MtrunA17_Chr4g0036071 | 37.589 | 141 | 65 | 2 | 174 | 291 | 314 | 454 | 5.07e-20 | 90.5 |
Msa1394600 | MtrunA17_Chr2g0329551 | 46.000 | 100 | 54 | 0 | 195 | 294 | 219 | 318 | 2.13e-19 | 88.6 |
Msa1394600 | MtrunA17_Chr6g0463571 | 34.286 | 175 | 102 | 2 | 136 | 310 | 96 | 257 | 3.45e-19 | 86.7 |
Msa1394600 | MtrunA17_Chr3g0107491 | 45.161 | 93 | 51 | 0 | 197 | 289 | 177 | 269 | 2.66e-18 | 84.7 |
Msa1394600 | MtrunA17_Chr3g0128781 | 44.681 | 94 | 52 | 0 | 196 | 289 | 107 | 200 | 3.00e-17 | 80.9 |
Msa1394600 | MtrunA17_Chr1g0156051 | 48.980 | 98 | 46 | 2 | 196 | 291 | 386 | 481 | 4.26e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1394600 | AT3G58120.1 | 55.556 | 351 | 114 | 12 | 1 | 331 | 1 | 329 | 5.30e-104 | 308 |
Msa1394600 | AT2G42380.2 | 53.333 | 345 | 122 | 10 | 1 | 331 | 1 | 320 | 1.08e-100 | 299 |
Msa1394600 | AT2G42380.1 | 49.855 | 345 | 123 | 11 | 1 | 331 | 1 | 309 | 2.76e-89 | 270 |
Msa1394600 | AT3G58120.2 | 56.122 | 294 | 98 | 10 | 1 | 276 | 1 | 281 | 3.75e-87 | 263 |
Msa1394600 | AT2G42380.5 | 53.873 | 284 | 104 | 7 | 1 | 276 | 1 | 265 | 6.10e-83 | 252 |
Msa1394600 | AT2G42380.3 | 46.939 | 245 | 103 | 7 | 1 | 237 | 1 | 226 | 5.70e-53 | 174 |
Msa1394600 | AT2G42380.4 | 46.939 | 245 | 103 | 7 | 1 | 237 | 1 | 226 | 5.70e-53 | 174 |
Msa1394600 | AT1G58110.1 | 29.552 | 335 | 162 | 10 | 2 | 292 | 20 | 324 | 8.85e-29 | 114 |
Msa1394600 | AT1G58110.2 | 29.552 | 335 | 162 | 10 | 2 | 292 | 20 | 324 | 8.85e-29 | 114 |
Msa1394600 | AT1G43700.1 | 49.485 | 97 | 49 | 0 | 195 | 291 | 192 | 288 | 1.29e-20 | 91.3 |
Msa1394600 | AT4G38900.2 | 47.368 | 95 | 50 | 0 | 195 | 289 | 392 | 486 | 9.81e-20 | 90.5 |
Msa1394600 | AT4G38900.3 | 47.368 | 95 | 50 | 0 | 195 | 289 | 392 | 486 | 9.81e-20 | 90.5 |
Msa1394600 | AT2G40620.1 | 45.263 | 95 | 52 | 0 | 195 | 289 | 146 | 240 | 5.36e-19 | 87.0 |
Msa1394600 | AT1G06070.1 | 44.000 | 100 | 56 | 0 | 195 | 294 | 208 | 307 | 1.27e-18 | 86.7 |
Msa1394600 | AT1G06850.1 | 47.312 | 93 | 49 | 0 | 197 | 289 | 148 | 240 | 2.17e-18 | 85.1 |
Msa1394600 | AT2G21230.4 | 45.361 | 97 | 53 | 0 | 195 | 291 | 368 | 464 | 2.24e-18 | 86.3 |
Msa1394600 | AT2G21230.1 | 45.361 | 97 | 53 | 0 | 195 | 291 | 368 | 464 | 2.24e-18 | 86.3 |
Msa1394600 | AT2G31370.5 | 42.991 | 107 | 61 | 0 | 188 | 294 | 192 | 298 | 4.66e-18 | 84.3 |
Msa1394600 | AT2G31370.2 | 28.287 | 251 | 152 | 6 | 63 | 294 | 57 | 298 | 6.32e-18 | 84.3 |
Msa1394600 | AT2G31370.4 | 28.287 | 251 | 152 | 6 | 63 | 294 | 57 | 298 | 6.32e-18 | 84.3 |
Msa1394600 | AT2G31370.1 | 28.287 | 251 | 152 | 6 | 63 | 294 | 57 | 298 | 6.32e-18 | 84.3 |
Msa1394600 | AT2G31370.7 | 28.287 | 251 | 152 | 6 | 63 | 294 | 57 | 298 | 6.32e-18 | 84.3 |
Msa1394600 | AT2G31370.3 | 28.287 | 251 | 152 | 6 | 63 | 294 | 57 | 298 | 6.32e-18 | 84.3 |
Msa1394600 | AT2G31370.6 | 28.287 | 251 | 152 | 6 | 63 | 294 | 57 | 298 | 6.32e-18 | 84.3 |
Msa1394600 | AT4G38900.1 | 44.554 | 101 | 50 | 1 | 195 | 289 | 392 | 492 | 1.45e-17 | 84.0 |
Msa1394600 | AT5G04840.1 | 50.000 | 84 | 42 | 0 | 206 | 289 | 177 | 260 | 3.56e-17 | 81.3 |
Msa1394600 | AT1G35490.2 | 41.509 | 106 | 56 | 2 | 185 | 289 | 158 | 258 | 8.50e-17 | 80.1 |
Msa1394600 | AT1G35490.1 | 41.509 | 106 | 56 | 2 | 185 | 289 | 158 | 258 | 8.50e-17 | 80.1 |
Msa1394600 | AT2G21230.3 | 41.748 | 103 | 54 | 1 | 195 | 291 | 368 | 470 | 5.04e-16 | 79.3 |
Msa1394600 | AT2G21230.2 | 45.122 | 82 | 45 | 0 | 195 | 276 | 368 | 449 | 2.01e-14 | 74.3 |
Msa1394600 | AT5G04840.2 | 51.389 | 72 | 35 | 0 | 206 | 277 | 177 | 248 | 9.51e-14 | 70.5 |
Msa1394600 | AT5G07160.1 | 41.489 | 94 | 55 | 0 | 196 | 289 | 47 | 140 | 4.41e-12 | 63.5 |
Msa1394600 | AT1G06850.2 | 70.455 | 44 | 13 | 0 | 197 | 240 | 148 | 191 | 4.86e-11 | 62.4 |
Msa1394600 | AT2G12900.1 | 34.021 | 97 | 64 | 0 | 195 | 291 | 114 | 210 | 7.74e-11 | 62.4 |
Find 105 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTTATTTGACGTATTAAT+TGG | 0.161175 | tig0021860:+109305 | Msa1394600:three_prime_UTR |
TATTTCTTACTACTAAAATT+TGG | 0.212403 | tig0021860:+108717 | Msa1394600:three_prime_UTR |
GTCACCACGGGTTGCATATT+TGG | 0.213119 | tig0021860:+107694 | Msa1394600:CDS |
TGATGTGTTTACTTTATATA+AGG | 0.232996 | tig0021860:+108904 | Msa1394600:three_prime_UTR |
TGGTGTCTGCTTTAACTATA+TGG | 0.255843 | tig0021860:+109027 | Msa1394600:three_prime_UTR |
ACGTCTGTGTGCCCCTCTTC+TGG | 0.291136 | tig0021860:-106657 | None:intergenic |
TCATTATCACATCGTGGTTT+AGG | 0.296604 | tig0021860:-108568 | None:intergenic |
GGTGTCTGCTTTAACTATAT+GGG | 0.324624 | tig0021860:+109028 | Msa1394600:three_prime_UTR |
CAGTGAAATCTTGCCTCCTA+TGG | 0.346635 | tig0021860:+109221 | Msa1394600:three_prime_UTR |
GGTGAATGCAAACAGGAAAA+TGG | 0.353861 | tig0021860:+106980 | Msa1394600:CDS |
GGCCAAGTTGGTGTCATGTT+TGG | 0.363718 | tig0021860:-106512 | None:intergenic |
ATCACACATTTCATTTGTTA+AGG | 0.364727 | tig0021860:+106396 | Msa1394600:five_prime_UTR |
GAATCTGATGAGGATGAAAT+TGG | 0.366529 | tig0021860:+106959 | Msa1394600:CDS |
ACCACTCAAAGTTGCATGAT+TGG | 0.375136 | tig0021860:+108929 | Msa1394600:three_prime_UTR |
ACGAAGTGTGACTTCATTAC+AGG | 0.377047 | tig0021860:+107504 | Msa1394600:CDS |
ACAATCAACAAAACCCTTCA+TGG | 0.391610 | tig0021860:+106606 | Msa1394600:CDS |
GATGTGTTTACTTTATATAA+GGG | 0.394891 | tig0021860:+108905 | Msa1394600:three_prime_UTR |
GTTGGTGTCATGTTTGGAAT+TGG | 0.398684 | tig0021860:-106506 | None:intergenic |
ATGTTTGGAATTGGAACCTT+TGG | 0.398984 | tig0021860:-106497 | None:intergenic |
AATGATGAAGATGACAATAA+TGG | 0.401593 | tig0021860:+107013 | Msa1394600:CDS |
TGCCTTTCTAACATTCCCTC+TGG | 0.445979 | tig0021860:+106218 | None:intergenic |
GAAAAGTTTGAAGCATTACT+TGG | 0.449386 | tig0021860:-106581 | None:intergenic |
TTAGGAAATTGAATTGATGA+AGG | 0.452878 | tig0021860:+108823 | Msa1394600:three_prime_UTR |
TAAGGCAATTCCACTGTAGC+TGG | 0.460035 | tig0021860:+106414 | Msa1394600:five_prime_UTR |
TGAAATTGGTGAATGCAAAC+AGG | 0.473536 | tig0021860:+106973 | Msa1394600:CDS |
AATAATTAAGATGATTAAGA+AGG | 0.473819 | tig0021860:+108751 | Msa1394600:three_prime_UTR |
AGTGAAATCTTGCCTCCTAT+GGG | 0.474873 | tig0021860:+109222 | Msa1394600:three_prime_UTR |
ATTATTGATGCTGCTTTCCA+TGG | 0.478771 | tig0021860:+109271 | Msa1394600:three_prime_UTR |
AAGAGGGGCACACAGACGTT+CGG | 0.489835 | tig0021860:+106661 | Msa1394600:CDS |
GTAGCTGATGGTGCTGGTGG+TGG | 0.496771 | tig0021860:-106830 | None:intergenic |
ATGGAGACAATGAGTTTGAA+AGG | 0.498812 | tig0021860:+106741 | Msa1394600:CDS |
TGAAGCATTACTTGGTGAGA+TGG | 0.500952 | tig0021860:-106573 | None:intergenic |
ACTACTAAAATTTGGAAGGA+AGG | 0.502414 | tig0021860:+108725 | Msa1394600:three_prime_UTR |
TCACATCGTGGTTTAGGTGA+TGG | 0.507950 | tig0021860:-108562 | None:intergenic |
TTATGATCAGAAGGAGTTGA+AGG | 0.508247 | tig0021860:-106872 | None:intergenic |
GTGTCTGCTTTAACTATATG+GGG | 0.511797 | tig0021860:+109029 | Msa1394600:three_prime_UTR |
TAAAGATGATTACATATCCA+TGG | 0.514742 | tig0021860:-109288 | None:intergenic |
TGTTGGGATGGATGAAAGGA+AGG | 0.518715 | tig0021860:+109189 | Msa1394600:three_prime_UTR |
TTCCAAACATGACACCAACT+TGG | 0.521076 | tig0021860:+106510 | Msa1394600:CDS |
CTGACCCCAAGAGGGTCAAA+AGG | 0.522349 | tig0021860:+107068 | Msa1394600:CDS |
ATAATTAAGATGATTAAGAA+GGG | 0.523437 | tig0021860:+108752 | Msa1394600:three_prime_UTR |
GAGAAGAAATAAACAGTACT+TGG | 0.525538 | tig0021860:+108998 | Msa1394600:three_prime_UTR |
TGATGGAGCATTGTCGTCGT+AGG | 0.526258 | tig0021860:+106717 | Msa1394600:CDS |
TTTGGAATTGGAACCTTTGG+TGG | 0.526554 | tig0021860:-106494 | None:intergenic |
GGGTTTATGTAATGTAATGT+TGG | 0.526786 | tig0021860:+109049 | Msa1394600:three_prime_UTR |
TATGAAGGTCACTGAGTCAC+TGG | 0.527916 | tig0021860:-106684 | None:intergenic |
CAAGACAAAATCTTCAAAGA+TGG | 0.531158 | tig0021860:+107782 | Msa1394600:CDS |
CATCATCGATGCTTCTATGA+AGG | 0.532117 | tig0021860:-106699 | None:intergenic |
TGGTGCTGGTGGTGGCATCA+TGG | 0.538097 | tig0021860:-106822 | None:intergenic |
CTTCATAGAAGCATCGATGA+TGG | 0.538192 | tig0021860:+106700 | Msa1394600:CDS |
TCCAATCATGCAACTTTGAG+TGG | 0.539330 | tig0021860:-108930 | None:intergenic |
AGAAACTCGTCCACCCATGA+AGG | 0.540302 | tig0021860:-106620 | None:intergenic |
TAAACAGTACTTGGTGGTGT+TGG | 0.549994 | tig0021860:+109007 | Msa1394600:three_prime_UTR |
GACTTCTCGTCCACCAGAAG+AGG | 0.550382 | tig0021860:+106644 | Msa1394600:CDS |
ATGTGTTTACTTTATATAAG+GGG | 0.553319 | tig0021860:+108906 | Msa1394600:three_prime_UTR |
AGAGGGAGATAGAGAGGCTG+AGG | 0.553494 | tig0021860:+108476 | Msa1394600:CDS |
GAGCATTGTCGTCGTAGGGA+TGG | 0.556038 | tig0021860:+106722 | Msa1394600:CDS |
ACTTCTCGTCCACCAGAAGA+GGG | 0.556593 | tig0021860:+106645 | Msa1394600:CDS |
TCTTACTACTAAAATTTGGA+AGG | 0.559578 | tig0021860:+108721 | Msa1394600:three_prime_UTR |
AGTATCAGTGCTGTCACCAC+GGG | 0.561461 | tig0021860:+107682 | Msa1394600:CDS |
CAATCAACAAAACCCTTCAT+GGG | 0.563412 | tig0021860:+106607 | Msa1394600:CDS |
TGATGACAAAGAGGAAGATG+AGG | 0.565693 | tig0021860:+106904 | Msa1394600:CDS |
AATGAAGAAGCATGTAGCAT+AGG | 0.566269 | tig0021860:-106275 | None:intergenic |
TGACAAAGAGGAAGATGAGG+AGG | 0.566303 | tig0021860:+106907 | Msa1394600:CDS |
AAGAAATAAACAGTACTTGG+TGG | 0.568573 | tig0021860:+109001 | Msa1394600:three_prime_UTR |
GAAGAAAATTCAGGCCAAGT+TGG | 0.570645 | tig0021860:-106524 | None:intergenic |
TTAGTGTAGACGAGGTTTCG+AGG | 0.573188 | tig0021860:+106792 | Msa1394600:CDS |
AATATCAAGAATGACAACAT+AGG | 0.574028 | tig0021860:-108651 | None:intergenic |
ACGTGATGGGAGAATATAAG+TGG | 0.580132 | tig0021860:+108849 | Msa1394600:three_prime_UTR |
CATTGAAGAGGGAGATAGAG+AGG | 0.587016 | tig0021860:+108470 | Msa1394600:CDS |
TTGATGCTGTTATGATCAGA+AGG | 0.588109 | tig0021860:-106881 | None:intergenic |
AACAAACTAGCCAGCTACAG+TGG | 0.588237 | tig0021860:-106424 | None:intergenic |
TTGCATATTTGGATCATCAG+AGG | 0.590830 | tig0021860:+107705 | Msa1394600:CDS |
AGTTGGAAAACAAAGACTAG+TGG | 0.592807 | tig0021860:+109161 | Msa1394600:three_prime_UTR |
TATGATCAGAAGGAGTTGAA+GGG | 0.593074 | tig0021860:-106871 | None:intergenic |
CTCATCAAGAAGCATTGAAG+AGG | 0.593087 | tig0021860:+108458 | Msa1394600:CDS |
TCTGTGTGCCCCTCTTCTGG+TGG | 0.594474 | tig0021860:-106654 | None:intergenic |
AAAGACATGTATGTATGTGA+AGG | 0.595881 | tig0021860:-106243 | None:intergenic |
GACAATGTAGCTGATGGTGC+TGG | 0.596193 | tig0021860:-106836 | None:intergenic |
GTCCATGTTTAGTGTAGACG+AGG | 0.601046 | tig0021860:+106784 | Msa1394600:CDS |
CAGCATCAATGATGACAAAG+AGG | 0.602367 | tig0021860:+106895 | Msa1394600:CDS |
GATGGAGCATTGTCGTCGTA+GGG | 0.605532 | tig0021860:+106718 | Msa1394600:CDS |
AACAAATCAAAACCCATAGG+AGG | 0.608678 | tig0021860:-109234 | None:intergenic |
TCAACAAAACCCTTCATGGG+TGG | 0.609845 | tig0021860:+106610 | Msa1394600:CDS |
TCTTATCAATGTTTGAGACA+TGG | 0.612460 | tig0021860:+108612 | Msa1394600:exon |
ATTGATGAAGGATAACGTGA+TGG | 0.621428 | tig0021860:+108835 | Msa1394600:three_prime_UTR |
AACCTCGTCTACACTAAACA+TGG | 0.622608 | tig0021860:-106786 | None:intergenic |
AATGTAGCTGATGGTGCTGG+TGG | 0.623330 | tig0021860:-106833 | None:intergenic |
AAGTATCAGTGCTGTCACCA+CGG | 0.625333 | tig0021860:+107681 | Msa1394600:CDS |
TATGGCTCAATTGCCACCAA+AGG | 0.629635 | tig0021860:+106481 | Msa1394600:exon |
TCATCAAGAAGCATTGAAGA+GGG | 0.631177 | tig0021860:+108459 | Msa1394600:CDS |
GAAACTCGTCCACCCATGAA+GGG | 0.631276 | tig0021860:-106619 | None:intergenic |
CTGCACAAAGATCAAGAGTG+AGG | 0.635769 | tig0021860:+107455 | Msa1394600:CDS |
TTGATGAAGGATAACGTGAT+GGG | 0.648021 | tig0021860:+108836 | Msa1394600:three_prime_UTR |
TACAACAAATCAAAACCCAT+AGG | 0.659769 | tig0021860:-109237 | None:intergenic |
TTGATATTGATGTCACTGAG+TGG | 0.663712 | tig0021860:-108974 | None:intergenic |
ATTGAAGCATGAATCTGATG+AGG | 0.673573 | tig0021860:+106949 | Msa1394600:CDS |
ATGTATGTGAAGGAGCCAGA+GGG | 0.675920 | tig0021860:-106233 | None:intergenic |
TATGTATGTGAAGGAGCCAG+AGG | 0.683769 | tig0021860:-106234 | None:intergenic |
GAATGCAAACAGGAAAATGG+AGG | 0.685882 | tig0021860:+106983 | Msa1394600:CDS |
CTTCTCGTCCACCAGAAGAG+GGG | 0.695347 | tig0021860:+106646 | Msa1394600:CDS |
CGTGGTTTAGGTGATGGAGA+TGG | 0.696148 | tig0021860:-108556 | None:intergenic |
TGAGTATCATTATCACATCG+TGG | 0.696934 | tig0021860:-108574 | None:intergenic |
TTAGATGACAATGTAGCTGA+TGG | 0.701045 | tig0021860:-106842 | None:intergenic |
TGATCCAAATATGCAACCCG+TGG | 0.752305 | tig0021860:-107698 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATAATTAAACAATTTTG+AGG | - | tig0021860:108056-108075 | None:intergenic | 10.0% |
!!! | TGTTTAATTATTTTTACTAT+AGG | + | tig0021860:108062-108081 | Msa1394600:intron | 10.0% |
!!! | ATTGATAATACTACAAATTA+AGG | - | tig0021860:107167-107186 | None:intergenic | 15.0% |
!! | GAATGAAAAAACTATATAAT+AGG | + | tig0021860:108111-108130 | Msa1394600:intron | 15.0% |
!!! | ATCTATAAGTATTATTTTGA+AGG | - | tig0021860:108393-108412 | None:intergenic | 15.0% |
!!! | CTTGATATTTTATTTTTAGA+AGG | + | tig0021860:108665-108684 | Msa1394600:three_prime_UTR | 15.0% |
!!! | AATTTTAGTAGTAAGAAATA+GGG | - | tig0021860:108717-108736 | None:intergenic | 15.0% |
!!! | AAATTTTAGTAGTAAGAAAT+AGG | - | tig0021860:108718-108737 | None:intergenic | 15.0% |
!! | TATTTCTTACTACTAAAATT+TGG | + | tig0021860:108717-108736 | Msa1394600:three_prime_UTR | 15.0% |
!! | AATAATTAAGATGATTAAGA+AGG | + | tig0021860:108751-108770 | Msa1394600:three_prime_UTR | 15.0% |
!! | ATAATTAAGATGATTAAGAA+GGG | + | tig0021860:108752-108771 | Msa1394600:three_prime_UTR | 15.0% |
!!! | TAATGGTAAGAAATTTTATT+AGG | + | tig0021860:108805-108824 | Msa1394600:three_prime_UTR | 15.0% |
!!! | TAATACACATATTTGGTTTT+AGG | - | tig0021860:107136-107155 | None:intergenic | 20.0% |
!!! | TATAATGTATTGATGAATGA+AGG | + | tig0021860:107655-107674 | Msa1394600:intron | 20.0% |
!!! | TATATATTGTTATTGATACG+TGG | + | tig0021860:107906-107925 | Msa1394600:intron | 20.0% |
!! | CTATATAATAGGCTTATAAA+TGG | + | tig0021860:108122-108141 | Msa1394600:intron | 20.0% |
!!! | GATATTTTATTTTTAGAAGG+TGG | + | tig0021860:108668-108687 | Msa1394600:three_prime_UTR | 20.0% |
!!! | GGTGGATATTTTTATTTTTT+TGG | + | tig0021860:108686-108705 | Msa1394600:three_prime_UTR | 20.0% |
!! | TGATGTGTTTACTTTATATA+AGG | + | tig0021860:108904-108923 | Msa1394600:three_prime_UTR | 20.0% |
!! | GATGTGTTTACTTTATATAA+GGG | + | tig0021860:108905-108924 | Msa1394600:three_prime_UTR | 20.0% |
!! | ATGTGTTTACTTTATATAAG+GGG | + | tig0021860:108906-108925 | Msa1394600:three_prime_UTR | 20.0% |
!! | CAACAAATACTAACAAAAAA+AGG | - | tig0021860:109089-109108 | None:intergenic | 20.0% |
!!! | TCTTTATTTGACGTATTAAT+TGG | + | tig0021860:109305-109324 | Msa1394600:three_prime_UTR | 20.0% |
!! | ATCACACATTTCATTTGTTA+AGG | + | tig0021860:106396-106415 | Msa1394600:five_prime_UTR | 25.0% |
!! | ATCTCTTTTTCTCTCAAATA+TGG | + | tig0021860:106463-106482 | Msa1394600:exon | 25.0% |
!!! | TTTTAAGGTTAGGCATTTTT+TGG | - | tig0021860:106553-106572 | None:intergenic | 25.0% |
! | AATGATGAAGATGACAATAA+TGG | + | tig0021860:107013-107032 | Msa1394600:CDS | 25.0% |
! | AACCAAATATGTGTATTACA+TGG | + | tig0021860:107138-107157 | Msa1394600:intron | 25.0% |
!! | TTATTAATTCTAGCTAGCTA+TGG | + | tig0021860:107221-107240 | Msa1394600:intron | 25.0% |
!!! | ATCTTTGAAGATTTTGTCTT+GGG | - | tig0021860:107783-107802 | None:intergenic | 25.0% |
! | GAAAGTTTAGACAGAATTAT+AGG | + | tig0021860:107959-107978 | Msa1394600:intron | 25.0% |
! | AATATCAAGAATGACAACAT+AGG | - | tig0021860:108654-108673 | None:intergenic | 25.0% |
! | TCTTACTACTAAAATTTGGA+AGG | + | tig0021860:108721-108740 | Msa1394600:three_prime_UTR | 25.0% |
! | GACAAAAAGTTGTAATGTAA+TGG | + | tig0021860:108788-108807 | Msa1394600:three_prime_UTR | 25.0% |
! | TTAGGAAATTGAATTGATGA+AGG | + | tig0021860:108823-108842 | Msa1394600:three_prime_UTR | 25.0% |
! | TAAAGATGATTACATATCCA+TGG | - | tig0021860:109291-109310 | None:intergenic | 25.0% |
AAAGACATGTATGTATGTGA+AGG | - | tig0021860:106246-106265 | None:intergenic | 30.0% | |
! | TTTTGGTGAGAAGAAAATTC+AGG | - | tig0021860:106536-106555 | None:intergenic | 30.0% |
! | GAAAAGTTTGAAGCATTACT+TGG | - | tig0021860:106584-106603 | None:intergenic | 30.0% |
AGCCATGTAATACACATATT+TGG | - | tig0021860:107143-107162 | None:intergenic | 30.0% | |
TTACATTGAACATGACATGA+TGG | + | tig0021860:107541-107560 | Msa1394600:intron | 30.0% | |
!! | CATCTTTGAAGATTTTGTCT+TGG | - | tig0021860:107784-107803 | None:intergenic | 30.0% |
CAAGACAAAATCTTCAAAGA+TGG | + | tig0021860:107782-107801 | Msa1394600:CDS | 30.0% | |
GGTGAAATGAGAATATGTTA+AGG | - | tig0021860:107818-107837 | None:intergenic | 30.0% | |
ATACTACATGACAGTGTAAA+AGG | - | tig0021860:107839-107858 | None:intergenic | 30.0% | |
GTCATTAAGATTACTACTAG+TGG | + | tig0021860:108354-108373 | Msa1394600:intron | 30.0% | |
!! | TGTTCTTGATGTTTTGTTGT+TGG | - | tig0021860:108513-108532 | None:intergenic | 30.0% |
! | TCTTATCAATGTTTGAGACA+TGG | + | tig0021860:108612-108631 | Msa1394600:exon | 30.0% |
ACTACTAAAATTTGGAAGGA+AGG | + | tig0021860:108725-108744 | Msa1394600:three_prime_UTR | 30.0% | |
GAGAAGAAATAAACAGTACT+TGG | + | tig0021860:108998-109017 | Msa1394600:three_prime_UTR | 30.0% | |
AAGAAATAAACAGTACTTGG+TGG | + | tig0021860:109001-109020 | Msa1394600:three_prime_UTR | 30.0% | |
GGGTTTATGTAATGTAATGT+TGG | + | tig0021860:109049-109068 | Msa1394600:three_prime_UTR | 30.0% | |
!!! | TGCTGTTTTTCAATTCAAGT+TGG | + | tig0021860:109144-109163 | Msa1394600:three_prime_UTR | 30.0% |
TACAACAAATCAAAACCCAT+AGG | - | tig0021860:109240-109259 | None:intergenic | 30.0% | |
! | AATGAAGAAGCATGTAGCAT+AGG | - | tig0021860:106278-106297 | None:intergenic | 35.0% |
! | ATGTTTGGAATTGGAACCTT+TGG | - | tig0021860:106500-106519 | None:intergenic | 35.0% |
!! | TACTTGGTGAGATGGTTTTA+AGG | - | tig0021860:106568-106587 | None:intergenic | 35.0% |
!!! | TGAAGGGTTTTGTTGATTGT+TGG | - | tig0021860:106606-106625 | None:intergenic | 35.0% |
ACAATCAACAAAACCCTTCA+TGG | + | tig0021860:106606-106625 | Msa1394600:CDS | 35.0% | |
CAATCAACAAAACCCTTCAT+GGG | + | tig0021860:106607-106626 | Msa1394600:CDS | 35.0% | |
ATGGAGACAATGAGTTTGAA+AGG | + | tig0021860:106741-106760 | Msa1394600:CDS | 35.0% | |
TTAGATGACAATGTAGCTGA+TGG | - | tig0021860:106845-106864 | None:intergenic | 35.0% | |
TATGATCAGAAGGAGTTGAA+GGG | - | tig0021860:106874-106893 | None:intergenic | 35.0% | |
TTATGATCAGAAGGAGTTGA+AGG | - | tig0021860:106875-106894 | None:intergenic | 35.0% | |
TTGATGCTGTTATGATCAGA+AGG | - | tig0021860:106884-106903 | None:intergenic | 35.0% | |
ATTGAAGCATGAATCTGATG+AGG | + | tig0021860:106949-106968 | Msa1394600:CDS | 35.0% | |
GAATCTGATGAGGATGAAAT+TGG | + | tig0021860:106959-106978 | Msa1394600:CDS | 35.0% | |
TGAAATTGGTGAATGCAAAC+AGG | + | tig0021860:106973-106992 | Msa1394600:CDS | 35.0% | |
AAAAATTACTGACCCCAAGA+GGG | + | tig0021860:107060-107079 | Msa1394600:CDS | 35.0% | |
! | GTTCCTTTTCATTCATGTGA+TGG | + | tig0021860:107379-107398 | Msa1394600:intron | 35.0% |
TCACCATCACATGAATGAAA+AGG | - | tig0021860:107385-107404 | None:intergenic | 35.0% | |
TTGCATATTTGGATCATCAG+AGG | + | tig0021860:107705-107724 | Msa1394600:CDS | 35.0% | |
TAGGCTTATAAATGGAACAG+AGG | + | tig0021860:108130-108149 | Msa1394600:intron | 35.0% | |
AATGGAACAGAGGATAACAA+CGG | + | tig0021860:108140-108159 | Msa1394600:intron | 35.0% | |
!!! | CGGAATTAGCTTCTTTTTTG+TGG | + | tig0021860:108160-108179 | Msa1394600:intron | 35.0% |
CAGAGCAATTATTAGAGAAG+AGG | + | tig0021860:108214-108233 | Msa1394600:intron | 35.0% | |
!! | TCATCAAGAAGCATTGAAGA+GGG | + | tig0021860:108459-108478 | Msa1394600:CDS | 35.0% |
TCATTATCACATCGTGGTTT+AGG | - | tig0021860:108571-108590 | None:intergenic | 35.0% | |
TGAGTATCATTATCACATCG+TGG | - | tig0021860:108577-108596 | None:intergenic | 35.0% | |
ATTGATGAAGGATAACGTGA+TGG | + | tig0021860:108835-108854 | Msa1394600:three_prime_UTR | 35.0% | |
TTGATGAAGGATAACGTGAT+GGG | + | tig0021860:108836-108855 | Msa1394600:three_prime_UTR | 35.0% | |
!! | AAGCTTTTGCTATCAAACTG+TGG | + | tig0021860:108873-108892 | Msa1394600:three_prime_UTR | 35.0% |
TTGATATTGATGTCACTGAG+TGG | - | tig0021860:108977-108996 | None:intergenic | 35.0% | |
TGGTGTCTGCTTTAACTATA+TGG | + | tig0021860:109027-109046 | Msa1394600:three_prime_UTR | 35.0% | |
GGTGTCTGCTTTAACTATAT+GGG | + | tig0021860:109028-109047 | Msa1394600:three_prime_UTR | 35.0% | |
GTGTCTGCTTTAACTATATG+GGG | + | tig0021860:109029-109048 | Msa1394600:three_prime_UTR | 35.0% | |
AGTTGGAAAACAAAGACTAG+TGG | + | tig0021860:109161-109180 | Msa1394600:three_prime_UTR | 35.0% | |
!! | AAAGACTAGTGGAGTTTTGT+TGG | + | tig0021860:109172-109191 | Msa1394600:three_prime_UTR | 35.0% |
!!! | AAGACTAGTGGAGTTTTGTT+GGG | + | tig0021860:109173-109192 | Msa1394600:three_prime_UTR | 35.0% |
AACAAATCAAAACCCATAGG+AGG | - | tig0021860:109237-109256 | None:intergenic | 35.0% | |
!! | ATTATTGATGCTGCTTTCCA+TGG | + | tig0021860:109271-109290 | Msa1394600:three_prime_UTR | 35.0% |
!!! | GTAGCTGGCTAGTTTGTTTT+TGG | + | tig0021860:106429-106448 | Msa1394600:five_prime_UTR | 40.0% |
! | TTTGGAATTGGAACCTTTGG+TGG | - | tig0021860:106497-106516 | None:intergenic | 40.0% |
!! | GTTGGTGTCATGTTTGGAAT+TGG | - | tig0021860:106509-106528 | None:intergenic | 40.0% |
TTCCAAACATGACACCAACT+TGG | + | tig0021860:106510-106529 | Msa1394600:CDS | 40.0% | |
GAAGAAAATTCAGGCCAAGT+TGG | - | tig0021860:106527-106546 | None:intergenic | 40.0% | |
!!! | GGTGAGATGGTTTTAAGGTT+AGG | - | tig0021860:106563-106582 | None:intergenic | 40.0% |
! | TGAAGCATTACTTGGTGAGA+TGG | - | tig0021860:106576-106595 | None:intergenic | 40.0% |
CATCATCGATGCTTCTATGA+AGG | - | tig0021860:106702-106721 | None:intergenic | 40.0% | |
!! | CTTCATAGAAGCATCGATGA+TGG | + | tig0021860:106700-106719 | Msa1394600:CDS | 40.0% |
AACCTCGTCTACACTAAACA+TGG | - | tig0021860:106789-106808 | None:intergenic | 40.0% | |
CAGCATCAATGATGACAAAG+AGG | + | tig0021860:106895-106914 | Msa1394600:CDS | 40.0% | |
TGATGACAAAGAGGAAGATG+AGG | + | tig0021860:106904-106923 | Msa1394600:CDS | 40.0% | |
GGTGAATGCAAACAGGAAAA+TGG | + | tig0021860:106980-106999 | Msa1394600:CDS | 40.0% | |
GAATGCAAACAGGAAAATGG+AGG | + | tig0021860:106983-107002 | Msa1394600:CDS | 40.0% | |
! | CTCTTGGGGTCAGTAATTTT+TGG | - | tig0021860:107061-107080 | None:intergenic | 40.0% |
CAAAAATTACTGACCCCAAG+AGG | + | tig0021860:107059-107078 | Msa1394600:CDS | 40.0% | |
! | TAGTACCTTTTGACCCTCTT+GGG | - | tig0021860:107076-107095 | None:intergenic | 40.0% |
ATTGAAACATGAGCTAGCAG+TGG | + | tig0021860:107327-107346 | Msa1394600:intron | 40.0% | |
ACGAAGTGTGACTTCATTAC+AGG | + | tig0021860:107504-107523 | Msa1394600:CDS | 40.0% | |
! | GAAGATTTTGTCTTGGGCTA+GGG | - | tig0021860:107777-107796 | None:intergenic | 40.0% |
! | TGAAGATTTTGTCTTGGGCT+AGG | - | tig0021860:107778-107797 | None:intergenic | 40.0% |
GCAATTGCAAGCTTAGTTAG+TGG | - | tig0021860:108029-108048 | None:intergenic | 40.0% | |
!! | CTCATCAAGAAGCATTGAAG+AGG | + | tig0021860:108458-108477 | Msa1394600:CDS | 40.0% |
! | ACGTGATGGGAGAATATAAG+TGG | + | tig0021860:108849-108868 | Msa1394600:three_prime_UTR | 40.0% |
ACCACTCAAAGTTGCATGAT+TGG | + | tig0021860:108929-108948 | Msa1394600:three_prime_UTR | 40.0% | |
TCCAATCATGCAACTTTGAG+TGG | - | tig0021860:108933-108952 | None:intergenic | 40.0% | |
!! | TAAACAGTACTTGGTGGTGT+TGG | + | tig0021860:109007-109026 | Msa1394600:three_prime_UTR | 40.0% |
!! | GTTTTGTTGGGATGGATGAA+AGG | + | tig0021860:109185-109204 | Msa1394600:three_prime_UTR | 40.0% |
AGTGAAATCTTGCCTCCTAT+GGG | + | tig0021860:109222-109241 | Msa1394600:three_prime_UTR | 40.0% | |
ATGTATGTGAAGGAGCCAGA+GGG | - | tig0021860:106236-106255 | None:intergenic | 45.0% | |
TATGTATGTGAAGGAGCCAG+AGG | - | tig0021860:106237-106256 | None:intergenic | 45.0% | |
TAAGGCAATTCCACTGTAGC+TGG | + | tig0021860:106414-106433 | Msa1394600:five_prime_UTR | 45.0% | |
AACAAACTAGCCAGCTACAG+TGG | - | tig0021860:106427-106446 | None:intergenic | 45.0% | |
TATGGCTCAATTGCCACCAA+AGG | + | tig0021860:106481-106500 | Msa1394600:exon | 45.0% | |
TCAACAAAACCCTTCATGGG+TGG | + | tig0021860:106610-106629 | Msa1394600:CDS | 45.0% | |
TATGAAGGTCACTGAGTCAC+TGG | - | tig0021860:106687-106706 | None:intergenic | 45.0% | |
GTCCATGTTTAGTGTAGACG+AGG | + | tig0021860:106784-106803 | Msa1394600:CDS | 45.0% | |
TTAGTGTAGACGAGGTTTCG+AGG | + | tig0021860:106792-106811 | Msa1394600:CDS | 45.0% | |
TGACAAAGAGGAAGATGAGG+AGG | + | tig0021860:106907-106926 | Msa1394600:CDS | 45.0% | |
!! | GGGGTCAGTAATTTTTGGAC+TGG | - | tig0021860:107056-107075 | None:intergenic | 45.0% |
! | AGTACCTTTTGACCCTCTTG+GGG | - | tig0021860:107075-107094 | None:intergenic | 45.0% |
! | GTAGTACCTTTTGACCCTCT+TGG | - | tig0021860:107077-107096 | None:intergenic | 45.0% |
CTGCACAAAGATCAAGAGTG+AGG | + | tig0021860:107455-107474 | Msa1394600:CDS | 45.0% | |
AAGTATCAGTGCTGTCACCA+CGG | + | tig0021860:107681-107700 | Msa1394600:CDS | 45.0% | |
TGATCCAAATATGCAACCCG+TGG | - | tig0021860:107701-107720 | None:intergenic | 45.0% | |
TTGTGGAACTTTGCACCGTA+CGG | + | tig0021860:108177-108196 | Msa1394600:intron | 45.0% | |
GATTCAACTCATGTGCCGTA+CGG | - | tig0021860:108195-108214 | None:intergenic | 45.0% | |
CATTGAAGAGGGAGATAGAG+AGG | + | tig0021860:108470-108489 | Msa1394600:CDS | 45.0% | |
TCACATCGTGGTTTAGGTGA+TGG | - | tig0021860:108565-108584 | None:intergenic | 45.0% | |
!!! | CTAGTGGAGTTTTGTTGGGA+TGG | + | tig0021860:109177-109196 | Msa1394600:three_prime_UTR | 45.0% |
TGTTGGGATGGATGAAAGGA+AGG | + | tig0021860:109189-109208 | Msa1394600:three_prime_UTR | 45.0% | |
CAGTGAAATCTTGCCTCCTA+TGG | + | tig0021860:109221-109240 | Msa1394600:three_prime_UTR | 45.0% | |
!!! | AATTTAAAATAAATAAGTAA+AGG | - | tig0021860:107286-107305 | None:intergenic | 5.0% |
!!! | ATTTATTTTAAATTTTTTTC+TGG | + | tig0021860:107292-107311 | Msa1394600:intron | 5.0% |
!!! | ATAATATTATGATTATATTT+TGG | + | tig0021860:107620-107639 | Msa1394600:intron | 5.0% |
!! | GGCCAAGTTGGTGTCATGTT+TGG | - | tig0021860:106515-106534 | None:intergenic | 50.0% |
GAAACTCGTCCACCCATGAA+GGG | - | tig0021860:106622-106641 | None:intergenic | 50.0% | |
AGAAACTCGTCCACCCATGA+AGG | - | tig0021860:106623-106642 | None:intergenic | 50.0% | |
ACTTCTCGTCCACCAGAAGA+GGG | + | tig0021860:106645-106664 | Msa1394600:CDS | 50.0% | |
!! | TGATGGAGCATTGTCGTCGT+AGG | + | tig0021860:106717-106736 | Msa1394600:CDS | 50.0% |
!! | GATGGAGCATTGTCGTCGTA+GGG | + | tig0021860:106718-106737 | Msa1394600:CDS | 50.0% |
! | AATGTAGCTGATGGTGCTGG+TGG | - | tig0021860:106836-106855 | None:intergenic | 50.0% |
! | GACAATGTAGCTGATGGTGC+TGG | - | tig0021860:106839-106858 | None:intergenic | 50.0% |
ACATGAGCTAGCAGTGGTGA+TGG | + | tig0021860:107333-107352 | Msa1394600:intron | 50.0% | |
AGTATCAGTGCTGTCACCAC+GGG | + | tig0021860:107682-107701 | Msa1394600:CDS | 50.0% | |
! | GTCACCACGGGTTGCATATT+TGG | + | tig0021860:107694-107713 | Msa1394600:CDS | 50.0% |
CTAGTTGCAGACACAGCACA+TGG | - | tig0021860:108326-108345 | None:intergenic | 50.0% | |
!! | CGTGGTTTAGGTGATGGAGA+TGG | - | tig0021860:108559-108578 | None:intergenic | 50.0% |
GACTTCTCGTCCACCAGAAG+AGG | + | tig0021860:106644-106663 | Msa1394600:CDS | 55.0% | |
CTTCTCGTCCACCAGAAGAG+GGG | + | tig0021860:106646-106665 | Msa1394600:CDS | 55.0% | |
! | AAGAGGGGCACACAGACGTT+CGG | + | tig0021860:106661-106680 | Msa1394600:CDS | 55.0% |
! | GAGCATTGTCGTCGTAGGGA+TGG | + | tig0021860:106722-106741 | Msa1394600:CDS | 55.0% |
CTGACCCCAAGAGGGTCAAA+AGG | + | tig0021860:107068-107087 | Msa1394600:CDS | 55.0% | |
AGAGGGAGATAGAGAGGCTG+AGG | + | tig0021860:108476-108495 | Msa1394600:CDS | 55.0% | |
TCTGTGTGCCCCTCTTCTGG+TGG | - | tig0021860:106657-106676 | None:intergenic | 60.0% | |
ACGTCTGTGTGCCCCTCTTC+TGG | - | tig0021860:106660-106679 | None:intergenic | 60.0% | |
!! | TGGTGCTGGTGGTGGCATCA+TGG | - | tig0021860:106825-106844 | None:intergenic | 60.0% |
!! | GTAGCTGATGGTGCTGGTGG+TGG | - | tig0021860:106833-106852 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0021860 | gene | 106225 | 109340 | 106225 | ID=Msa1394600;Name=Msa1394600 |
tig0021860 | mRNA | 106225 | 109340 | 106225 | ID=Msa1394600-mRNA-1;Parent=Msa1394600;Name=Msa1394600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=257|1|1|1|1|1|4|713|331 |
tig0021860 | exon | 106225 | 107089 | 106225 | ID=Msa1394600-mRNA-1:exon:14387;Parent=Msa1394600-mRNA-1 |
tig0021860 | exon | 107435 | 107525 | 107435 | ID=Msa1394600-mRNA-1:exon:14388;Parent=Msa1394600-mRNA-1 |
tig0021860 | exon | 107677 | 107803 | 107677 | ID=Msa1394600-mRNA-1:exon:14389;Parent=Msa1394600-mRNA-1 |
tig0021860 | exon | 108458 | 109340 | 108458 | ID=Msa1394600-mRNA-1:exon:14390;Parent=Msa1394600-mRNA-1 |
tig0021860 | five_prime_UTR | 106225 | 106481 | 106225 | ID=Msa1394600-mRNA-1:five_prime_utr;Parent=Msa1394600-mRNA-1 |
tig0021860 | CDS | 106482 | 107089 | 106482 | ID=Msa1394600-mRNA-1:cds;Parent=Msa1394600-mRNA-1 |
tig0021860 | CDS | 107435 | 107525 | 107435 | ID=Msa1394600-mRNA-1:cds;Parent=Msa1394600-mRNA-1 |
tig0021860 | CDS | 107677 | 107803 | 107677 | ID=Msa1394600-mRNA-1:cds;Parent=Msa1394600-mRNA-1 |
tig0021860 | CDS | 108458 | 108627 | 108458 | ID=Msa1394600-mRNA-1:cds;Parent=Msa1394600-mRNA-1 |
tig0021860 | three_prime_UTR | 108628 | 109340 | 108628 | ID=Msa1394600-mRNA-1:three_prime_utr;Parent=Msa1394600-mRNA-1 |
Gene Sequence |
Protein sequence |