AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1394600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394600 MtrunA17_Chr4g0040891 98.489 331 2 1 1 331 1 328 0.0 669
Msa1394600 MtrunA17_Chr2g0325131 62.791 344 92 13 1 330 1 322 4.89e-119 347
Msa1394600 MtrunA17_Chr2g0316551 51.420 352 118 16 1 316 1 335 3.61e-90 273
Msa1394600 MtrunA17_Chr8g0380611 52.941 102 43 1 191 292 228 324 1.23e-23 100
Msa1394600 MtrunA17_Chr5g0432701 48.387 93 48 0 197 289 159 251 4.41e-20 89.7
Msa1394600 MtrunA17_Chr4g0036071 37.589 141 65 2 174 291 314 454 5.07e-20 90.5
Msa1394600 MtrunA17_Chr2g0329551 46.000 100 54 0 195 294 219 318 2.13e-19 88.6
Msa1394600 MtrunA17_Chr6g0463571 34.286 175 102 2 136 310 96 257 3.45e-19 86.7
Msa1394600 MtrunA17_Chr3g0107491 45.161 93 51 0 197 289 177 269 2.66e-18 84.7
Msa1394600 MtrunA17_Chr3g0128781 44.681 94 52 0 196 289 107 200 3.00e-17 80.9
Msa1394600 MtrunA17_Chr1g0156051 48.980 98 46 2 196 291 386 481 4.26e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394600 AT3G58120.1 55.556 351 114 12 1 331 1 329 5.30e-104 308
Msa1394600 AT2G42380.2 53.333 345 122 10 1 331 1 320 1.08e-100 299
Msa1394600 AT2G42380.1 49.855 345 123 11 1 331 1 309 2.76e-89 270
Msa1394600 AT3G58120.2 56.122 294 98 10 1 276 1 281 3.75e-87 263
Msa1394600 AT2G42380.5 53.873 284 104 7 1 276 1 265 6.10e-83 252
Msa1394600 AT2G42380.3 46.939 245 103 7 1 237 1 226 5.70e-53 174
Msa1394600 AT2G42380.4 46.939 245 103 7 1 237 1 226 5.70e-53 174
Msa1394600 AT1G58110.1 29.552 335 162 10 2 292 20 324 8.85e-29 114
Msa1394600 AT1G58110.2 29.552 335 162 10 2 292 20 324 8.85e-29 114
Msa1394600 AT1G43700.1 49.485 97 49 0 195 291 192 288 1.29e-20 91.3
Msa1394600 AT4G38900.2 47.368 95 50 0 195 289 392 486 9.81e-20 90.5
Msa1394600 AT4G38900.3 47.368 95 50 0 195 289 392 486 9.81e-20 90.5
Msa1394600 AT2G40620.1 45.263 95 52 0 195 289 146 240 5.36e-19 87.0
Msa1394600 AT1G06070.1 44.000 100 56 0 195 294 208 307 1.27e-18 86.7
Msa1394600 AT1G06850.1 47.312 93 49 0 197 289 148 240 2.17e-18 85.1
Msa1394600 AT2G21230.4 45.361 97 53 0 195 291 368 464 2.24e-18 86.3
Msa1394600 AT2G21230.1 45.361 97 53 0 195 291 368 464 2.24e-18 86.3
Msa1394600 AT2G31370.5 42.991 107 61 0 188 294 192 298 4.66e-18 84.3
Msa1394600 AT2G31370.2 28.287 251 152 6 63 294 57 298 6.32e-18 84.3
Msa1394600 AT2G31370.4 28.287 251 152 6 63 294 57 298 6.32e-18 84.3
Msa1394600 AT2G31370.1 28.287 251 152 6 63 294 57 298 6.32e-18 84.3
Msa1394600 AT2G31370.7 28.287 251 152 6 63 294 57 298 6.32e-18 84.3
Msa1394600 AT2G31370.3 28.287 251 152 6 63 294 57 298 6.32e-18 84.3
Msa1394600 AT2G31370.6 28.287 251 152 6 63 294 57 298 6.32e-18 84.3
Msa1394600 AT4G38900.1 44.554 101 50 1 195 289 392 492 1.45e-17 84.0
Msa1394600 AT5G04840.1 50.000 84 42 0 206 289 177 260 3.56e-17 81.3
Msa1394600 AT1G35490.2 41.509 106 56 2 185 289 158 258 8.50e-17 80.1
Msa1394600 AT1G35490.1 41.509 106 56 2 185 289 158 258 8.50e-17 80.1
Msa1394600 AT2G21230.3 41.748 103 54 1 195 291 368 470 5.04e-16 79.3
Msa1394600 AT2G21230.2 45.122 82 45 0 195 276 368 449 2.01e-14 74.3
Msa1394600 AT5G04840.2 51.389 72 35 0 206 277 177 248 9.51e-14 70.5
Msa1394600 AT5G07160.1 41.489 94 55 0 196 289 47 140 4.41e-12 63.5
Msa1394600 AT1G06850.2 70.455 44 13 0 197 240 148 191 4.86e-11 62.4
Msa1394600 AT2G12900.1 34.021 97 64 0 195 291 114 210 7.74e-11 62.4

Find 105 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTATTTGACGTATTAAT+TGG 0.161175 tig0021860:+109305 Msa1394600:three_prime_UTR
TATTTCTTACTACTAAAATT+TGG 0.212403 tig0021860:+108717 Msa1394600:three_prime_UTR
GTCACCACGGGTTGCATATT+TGG 0.213119 tig0021860:+107694 Msa1394600:CDS
TGATGTGTTTACTTTATATA+AGG 0.232996 tig0021860:+108904 Msa1394600:three_prime_UTR
TGGTGTCTGCTTTAACTATA+TGG 0.255843 tig0021860:+109027 Msa1394600:three_prime_UTR
ACGTCTGTGTGCCCCTCTTC+TGG 0.291136 tig0021860:-106657 None:intergenic
TCATTATCACATCGTGGTTT+AGG 0.296604 tig0021860:-108568 None:intergenic
GGTGTCTGCTTTAACTATAT+GGG 0.324624 tig0021860:+109028 Msa1394600:three_prime_UTR
CAGTGAAATCTTGCCTCCTA+TGG 0.346635 tig0021860:+109221 Msa1394600:three_prime_UTR
GGTGAATGCAAACAGGAAAA+TGG 0.353861 tig0021860:+106980 Msa1394600:CDS
GGCCAAGTTGGTGTCATGTT+TGG 0.363718 tig0021860:-106512 None:intergenic
ATCACACATTTCATTTGTTA+AGG 0.364727 tig0021860:+106396 Msa1394600:five_prime_UTR
GAATCTGATGAGGATGAAAT+TGG 0.366529 tig0021860:+106959 Msa1394600:CDS
ACCACTCAAAGTTGCATGAT+TGG 0.375136 tig0021860:+108929 Msa1394600:three_prime_UTR
ACGAAGTGTGACTTCATTAC+AGG 0.377047 tig0021860:+107504 Msa1394600:CDS
ACAATCAACAAAACCCTTCA+TGG 0.391610 tig0021860:+106606 Msa1394600:CDS
GATGTGTTTACTTTATATAA+GGG 0.394891 tig0021860:+108905 Msa1394600:three_prime_UTR
GTTGGTGTCATGTTTGGAAT+TGG 0.398684 tig0021860:-106506 None:intergenic
ATGTTTGGAATTGGAACCTT+TGG 0.398984 tig0021860:-106497 None:intergenic
AATGATGAAGATGACAATAA+TGG 0.401593 tig0021860:+107013 Msa1394600:CDS
TGCCTTTCTAACATTCCCTC+TGG 0.445979 tig0021860:+106218 None:intergenic
GAAAAGTTTGAAGCATTACT+TGG 0.449386 tig0021860:-106581 None:intergenic
TTAGGAAATTGAATTGATGA+AGG 0.452878 tig0021860:+108823 Msa1394600:three_prime_UTR
TAAGGCAATTCCACTGTAGC+TGG 0.460035 tig0021860:+106414 Msa1394600:five_prime_UTR
TGAAATTGGTGAATGCAAAC+AGG 0.473536 tig0021860:+106973 Msa1394600:CDS
AATAATTAAGATGATTAAGA+AGG 0.473819 tig0021860:+108751 Msa1394600:three_prime_UTR
AGTGAAATCTTGCCTCCTAT+GGG 0.474873 tig0021860:+109222 Msa1394600:three_prime_UTR
ATTATTGATGCTGCTTTCCA+TGG 0.478771 tig0021860:+109271 Msa1394600:three_prime_UTR
AAGAGGGGCACACAGACGTT+CGG 0.489835 tig0021860:+106661 Msa1394600:CDS
GTAGCTGATGGTGCTGGTGG+TGG 0.496771 tig0021860:-106830 None:intergenic
ATGGAGACAATGAGTTTGAA+AGG 0.498812 tig0021860:+106741 Msa1394600:CDS
TGAAGCATTACTTGGTGAGA+TGG 0.500952 tig0021860:-106573 None:intergenic
ACTACTAAAATTTGGAAGGA+AGG 0.502414 tig0021860:+108725 Msa1394600:three_prime_UTR
TCACATCGTGGTTTAGGTGA+TGG 0.507950 tig0021860:-108562 None:intergenic
TTATGATCAGAAGGAGTTGA+AGG 0.508247 tig0021860:-106872 None:intergenic
GTGTCTGCTTTAACTATATG+GGG 0.511797 tig0021860:+109029 Msa1394600:three_prime_UTR
TAAAGATGATTACATATCCA+TGG 0.514742 tig0021860:-109288 None:intergenic
TGTTGGGATGGATGAAAGGA+AGG 0.518715 tig0021860:+109189 Msa1394600:three_prime_UTR
TTCCAAACATGACACCAACT+TGG 0.521076 tig0021860:+106510 Msa1394600:CDS
CTGACCCCAAGAGGGTCAAA+AGG 0.522349 tig0021860:+107068 Msa1394600:CDS
ATAATTAAGATGATTAAGAA+GGG 0.523437 tig0021860:+108752 Msa1394600:three_prime_UTR
GAGAAGAAATAAACAGTACT+TGG 0.525538 tig0021860:+108998 Msa1394600:three_prime_UTR
TGATGGAGCATTGTCGTCGT+AGG 0.526258 tig0021860:+106717 Msa1394600:CDS
TTTGGAATTGGAACCTTTGG+TGG 0.526554 tig0021860:-106494 None:intergenic
GGGTTTATGTAATGTAATGT+TGG 0.526786 tig0021860:+109049 Msa1394600:three_prime_UTR
TATGAAGGTCACTGAGTCAC+TGG 0.527916 tig0021860:-106684 None:intergenic
CAAGACAAAATCTTCAAAGA+TGG 0.531158 tig0021860:+107782 Msa1394600:CDS
CATCATCGATGCTTCTATGA+AGG 0.532117 tig0021860:-106699 None:intergenic
TGGTGCTGGTGGTGGCATCA+TGG 0.538097 tig0021860:-106822 None:intergenic
CTTCATAGAAGCATCGATGA+TGG 0.538192 tig0021860:+106700 Msa1394600:CDS
TCCAATCATGCAACTTTGAG+TGG 0.539330 tig0021860:-108930 None:intergenic
AGAAACTCGTCCACCCATGA+AGG 0.540302 tig0021860:-106620 None:intergenic
TAAACAGTACTTGGTGGTGT+TGG 0.549994 tig0021860:+109007 Msa1394600:three_prime_UTR
GACTTCTCGTCCACCAGAAG+AGG 0.550382 tig0021860:+106644 Msa1394600:CDS
ATGTGTTTACTTTATATAAG+GGG 0.553319 tig0021860:+108906 Msa1394600:three_prime_UTR
AGAGGGAGATAGAGAGGCTG+AGG 0.553494 tig0021860:+108476 Msa1394600:CDS
GAGCATTGTCGTCGTAGGGA+TGG 0.556038 tig0021860:+106722 Msa1394600:CDS
ACTTCTCGTCCACCAGAAGA+GGG 0.556593 tig0021860:+106645 Msa1394600:CDS
TCTTACTACTAAAATTTGGA+AGG 0.559578 tig0021860:+108721 Msa1394600:three_prime_UTR
AGTATCAGTGCTGTCACCAC+GGG 0.561461 tig0021860:+107682 Msa1394600:CDS
CAATCAACAAAACCCTTCAT+GGG 0.563412 tig0021860:+106607 Msa1394600:CDS
TGATGACAAAGAGGAAGATG+AGG 0.565693 tig0021860:+106904 Msa1394600:CDS
AATGAAGAAGCATGTAGCAT+AGG 0.566269 tig0021860:-106275 None:intergenic
TGACAAAGAGGAAGATGAGG+AGG 0.566303 tig0021860:+106907 Msa1394600:CDS
AAGAAATAAACAGTACTTGG+TGG 0.568573 tig0021860:+109001 Msa1394600:three_prime_UTR
GAAGAAAATTCAGGCCAAGT+TGG 0.570645 tig0021860:-106524 None:intergenic
TTAGTGTAGACGAGGTTTCG+AGG 0.573188 tig0021860:+106792 Msa1394600:CDS
AATATCAAGAATGACAACAT+AGG 0.574028 tig0021860:-108651 None:intergenic
ACGTGATGGGAGAATATAAG+TGG 0.580132 tig0021860:+108849 Msa1394600:three_prime_UTR
CATTGAAGAGGGAGATAGAG+AGG 0.587016 tig0021860:+108470 Msa1394600:CDS
TTGATGCTGTTATGATCAGA+AGG 0.588109 tig0021860:-106881 None:intergenic
AACAAACTAGCCAGCTACAG+TGG 0.588237 tig0021860:-106424 None:intergenic
TTGCATATTTGGATCATCAG+AGG 0.590830 tig0021860:+107705 Msa1394600:CDS
AGTTGGAAAACAAAGACTAG+TGG 0.592807 tig0021860:+109161 Msa1394600:three_prime_UTR
TATGATCAGAAGGAGTTGAA+GGG 0.593074 tig0021860:-106871 None:intergenic
CTCATCAAGAAGCATTGAAG+AGG 0.593087 tig0021860:+108458 Msa1394600:CDS
TCTGTGTGCCCCTCTTCTGG+TGG 0.594474 tig0021860:-106654 None:intergenic
AAAGACATGTATGTATGTGA+AGG 0.595881 tig0021860:-106243 None:intergenic
GACAATGTAGCTGATGGTGC+TGG 0.596193 tig0021860:-106836 None:intergenic
GTCCATGTTTAGTGTAGACG+AGG 0.601046 tig0021860:+106784 Msa1394600:CDS
CAGCATCAATGATGACAAAG+AGG 0.602367 tig0021860:+106895 Msa1394600:CDS
GATGGAGCATTGTCGTCGTA+GGG 0.605532 tig0021860:+106718 Msa1394600:CDS
AACAAATCAAAACCCATAGG+AGG 0.608678 tig0021860:-109234 None:intergenic
TCAACAAAACCCTTCATGGG+TGG 0.609845 tig0021860:+106610 Msa1394600:CDS
TCTTATCAATGTTTGAGACA+TGG 0.612460 tig0021860:+108612 Msa1394600:exon
ATTGATGAAGGATAACGTGA+TGG 0.621428 tig0021860:+108835 Msa1394600:three_prime_UTR
AACCTCGTCTACACTAAACA+TGG 0.622608 tig0021860:-106786 None:intergenic
AATGTAGCTGATGGTGCTGG+TGG 0.623330 tig0021860:-106833 None:intergenic
AAGTATCAGTGCTGTCACCA+CGG 0.625333 tig0021860:+107681 Msa1394600:CDS
TATGGCTCAATTGCCACCAA+AGG 0.629635 tig0021860:+106481 Msa1394600:exon
TCATCAAGAAGCATTGAAGA+GGG 0.631177 tig0021860:+108459 Msa1394600:CDS
GAAACTCGTCCACCCATGAA+GGG 0.631276 tig0021860:-106619 None:intergenic
CTGCACAAAGATCAAGAGTG+AGG 0.635769 tig0021860:+107455 Msa1394600:CDS
TTGATGAAGGATAACGTGAT+GGG 0.648021 tig0021860:+108836 Msa1394600:three_prime_UTR
TACAACAAATCAAAACCCAT+AGG 0.659769 tig0021860:-109237 None:intergenic
TTGATATTGATGTCACTGAG+TGG 0.663712 tig0021860:-108974 None:intergenic
ATTGAAGCATGAATCTGATG+AGG 0.673573 tig0021860:+106949 Msa1394600:CDS
ATGTATGTGAAGGAGCCAGA+GGG 0.675920 tig0021860:-106233 None:intergenic
TATGTATGTGAAGGAGCCAG+AGG 0.683769 tig0021860:-106234 None:intergenic
GAATGCAAACAGGAAAATGG+AGG 0.685882 tig0021860:+106983 Msa1394600:CDS
CTTCTCGTCCACCAGAAGAG+GGG 0.695347 tig0021860:+106646 Msa1394600:CDS
CGTGGTTTAGGTGATGGAGA+TGG 0.696148 tig0021860:-108556 None:intergenic
TGAGTATCATTATCACATCG+TGG 0.696934 tig0021860:-108574 None:intergenic
TTAGATGACAATGTAGCTGA+TGG 0.701045 tig0021860:-106842 None:intergenic
TGATCCAAATATGCAACCCG+TGG 0.752305 tig0021860:-107698 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATTAAACAATTTTG+AGG - tig0021860:108056-108075 None:intergenic 10.0%
!!! TGTTTAATTATTTTTACTAT+AGG + tig0021860:108062-108081 Msa1394600:intron 10.0%
!!! ATTGATAATACTACAAATTA+AGG - tig0021860:107167-107186 None:intergenic 15.0%
!! GAATGAAAAAACTATATAAT+AGG + tig0021860:108111-108130 Msa1394600:intron 15.0%
!!! ATCTATAAGTATTATTTTGA+AGG - tig0021860:108393-108412 None:intergenic 15.0%
!!! CTTGATATTTTATTTTTAGA+AGG + tig0021860:108665-108684 Msa1394600:three_prime_UTR 15.0%
!!! AATTTTAGTAGTAAGAAATA+GGG - tig0021860:108717-108736 None:intergenic 15.0%
!!! AAATTTTAGTAGTAAGAAAT+AGG - tig0021860:108718-108737 None:intergenic 15.0%
!! TATTTCTTACTACTAAAATT+TGG + tig0021860:108717-108736 Msa1394600:three_prime_UTR 15.0%
!! AATAATTAAGATGATTAAGA+AGG + tig0021860:108751-108770 Msa1394600:three_prime_UTR 15.0%
!! ATAATTAAGATGATTAAGAA+GGG + tig0021860:108752-108771 Msa1394600:three_prime_UTR 15.0%
!!! TAATGGTAAGAAATTTTATT+AGG + tig0021860:108805-108824 Msa1394600:three_prime_UTR 15.0%
!!! TAATACACATATTTGGTTTT+AGG - tig0021860:107136-107155 None:intergenic 20.0%
!!! TATAATGTATTGATGAATGA+AGG + tig0021860:107655-107674 Msa1394600:intron 20.0%
!!! TATATATTGTTATTGATACG+TGG + tig0021860:107906-107925 Msa1394600:intron 20.0%
!! CTATATAATAGGCTTATAAA+TGG + tig0021860:108122-108141 Msa1394600:intron 20.0%
!!! GATATTTTATTTTTAGAAGG+TGG + tig0021860:108668-108687 Msa1394600:three_prime_UTR 20.0%
!!! GGTGGATATTTTTATTTTTT+TGG + tig0021860:108686-108705 Msa1394600:three_prime_UTR 20.0%
!! TGATGTGTTTACTTTATATA+AGG + tig0021860:108904-108923 Msa1394600:three_prime_UTR 20.0%
!! GATGTGTTTACTTTATATAA+GGG + tig0021860:108905-108924 Msa1394600:three_prime_UTR 20.0%
!! ATGTGTTTACTTTATATAAG+GGG + tig0021860:108906-108925 Msa1394600:three_prime_UTR 20.0%
!! CAACAAATACTAACAAAAAA+AGG - tig0021860:109089-109108 None:intergenic 20.0%
!!! TCTTTATTTGACGTATTAAT+TGG + tig0021860:109305-109324 Msa1394600:three_prime_UTR 20.0%
!! ATCACACATTTCATTTGTTA+AGG + tig0021860:106396-106415 Msa1394600:five_prime_UTR 25.0%
!! ATCTCTTTTTCTCTCAAATA+TGG + tig0021860:106463-106482 Msa1394600:exon 25.0%
!!! TTTTAAGGTTAGGCATTTTT+TGG - tig0021860:106553-106572 None:intergenic 25.0%
! AATGATGAAGATGACAATAA+TGG + tig0021860:107013-107032 Msa1394600:CDS 25.0%
! AACCAAATATGTGTATTACA+TGG + tig0021860:107138-107157 Msa1394600:intron 25.0%
!! TTATTAATTCTAGCTAGCTA+TGG + tig0021860:107221-107240 Msa1394600:intron 25.0%
!!! ATCTTTGAAGATTTTGTCTT+GGG - tig0021860:107783-107802 None:intergenic 25.0%
! GAAAGTTTAGACAGAATTAT+AGG + tig0021860:107959-107978 Msa1394600:intron 25.0%
! AATATCAAGAATGACAACAT+AGG - tig0021860:108654-108673 None:intergenic 25.0%
! TCTTACTACTAAAATTTGGA+AGG + tig0021860:108721-108740 Msa1394600:three_prime_UTR 25.0%
! GACAAAAAGTTGTAATGTAA+TGG + tig0021860:108788-108807 Msa1394600:three_prime_UTR 25.0%
! TTAGGAAATTGAATTGATGA+AGG + tig0021860:108823-108842 Msa1394600:three_prime_UTR 25.0%
! TAAAGATGATTACATATCCA+TGG - tig0021860:109291-109310 None:intergenic 25.0%
AAAGACATGTATGTATGTGA+AGG - tig0021860:106246-106265 None:intergenic 30.0%
! TTTTGGTGAGAAGAAAATTC+AGG - tig0021860:106536-106555 None:intergenic 30.0%
! GAAAAGTTTGAAGCATTACT+TGG - tig0021860:106584-106603 None:intergenic 30.0%
AGCCATGTAATACACATATT+TGG - tig0021860:107143-107162 None:intergenic 30.0%
TTACATTGAACATGACATGA+TGG + tig0021860:107541-107560 Msa1394600:intron 30.0%
!! CATCTTTGAAGATTTTGTCT+TGG - tig0021860:107784-107803 None:intergenic 30.0%
CAAGACAAAATCTTCAAAGA+TGG + tig0021860:107782-107801 Msa1394600:CDS 30.0%
GGTGAAATGAGAATATGTTA+AGG - tig0021860:107818-107837 None:intergenic 30.0%
ATACTACATGACAGTGTAAA+AGG - tig0021860:107839-107858 None:intergenic 30.0%
GTCATTAAGATTACTACTAG+TGG + tig0021860:108354-108373 Msa1394600:intron 30.0%
!! TGTTCTTGATGTTTTGTTGT+TGG - tig0021860:108513-108532 None:intergenic 30.0%
! TCTTATCAATGTTTGAGACA+TGG + tig0021860:108612-108631 Msa1394600:exon 30.0%
ACTACTAAAATTTGGAAGGA+AGG + tig0021860:108725-108744 Msa1394600:three_prime_UTR 30.0%
GAGAAGAAATAAACAGTACT+TGG + tig0021860:108998-109017 Msa1394600:three_prime_UTR 30.0%
AAGAAATAAACAGTACTTGG+TGG + tig0021860:109001-109020 Msa1394600:three_prime_UTR 30.0%
GGGTTTATGTAATGTAATGT+TGG + tig0021860:109049-109068 Msa1394600:three_prime_UTR 30.0%
!!! TGCTGTTTTTCAATTCAAGT+TGG + tig0021860:109144-109163 Msa1394600:three_prime_UTR 30.0%
TACAACAAATCAAAACCCAT+AGG - tig0021860:109240-109259 None:intergenic 30.0%
! AATGAAGAAGCATGTAGCAT+AGG - tig0021860:106278-106297 None:intergenic 35.0%
! ATGTTTGGAATTGGAACCTT+TGG - tig0021860:106500-106519 None:intergenic 35.0%
!! TACTTGGTGAGATGGTTTTA+AGG - tig0021860:106568-106587 None:intergenic 35.0%
!!! TGAAGGGTTTTGTTGATTGT+TGG - tig0021860:106606-106625 None:intergenic 35.0%
ACAATCAACAAAACCCTTCA+TGG + tig0021860:106606-106625 Msa1394600:CDS 35.0%
CAATCAACAAAACCCTTCAT+GGG + tig0021860:106607-106626 Msa1394600:CDS 35.0%
ATGGAGACAATGAGTTTGAA+AGG + tig0021860:106741-106760 Msa1394600:CDS 35.0%
TTAGATGACAATGTAGCTGA+TGG - tig0021860:106845-106864 None:intergenic 35.0%
TATGATCAGAAGGAGTTGAA+GGG - tig0021860:106874-106893 None:intergenic 35.0%
TTATGATCAGAAGGAGTTGA+AGG - tig0021860:106875-106894 None:intergenic 35.0%
TTGATGCTGTTATGATCAGA+AGG - tig0021860:106884-106903 None:intergenic 35.0%
ATTGAAGCATGAATCTGATG+AGG + tig0021860:106949-106968 Msa1394600:CDS 35.0%
GAATCTGATGAGGATGAAAT+TGG + tig0021860:106959-106978 Msa1394600:CDS 35.0%
TGAAATTGGTGAATGCAAAC+AGG + tig0021860:106973-106992 Msa1394600:CDS 35.0%
AAAAATTACTGACCCCAAGA+GGG + tig0021860:107060-107079 Msa1394600:CDS 35.0%
! GTTCCTTTTCATTCATGTGA+TGG + tig0021860:107379-107398 Msa1394600:intron 35.0%
TCACCATCACATGAATGAAA+AGG - tig0021860:107385-107404 None:intergenic 35.0%
TTGCATATTTGGATCATCAG+AGG + tig0021860:107705-107724 Msa1394600:CDS 35.0%
TAGGCTTATAAATGGAACAG+AGG + tig0021860:108130-108149 Msa1394600:intron 35.0%
AATGGAACAGAGGATAACAA+CGG + tig0021860:108140-108159 Msa1394600:intron 35.0%
!!! CGGAATTAGCTTCTTTTTTG+TGG + tig0021860:108160-108179 Msa1394600:intron 35.0%
CAGAGCAATTATTAGAGAAG+AGG + tig0021860:108214-108233 Msa1394600:intron 35.0%
!! TCATCAAGAAGCATTGAAGA+GGG + tig0021860:108459-108478 Msa1394600:CDS 35.0%
TCATTATCACATCGTGGTTT+AGG - tig0021860:108571-108590 None:intergenic 35.0%
TGAGTATCATTATCACATCG+TGG - tig0021860:108577-108596 None:intergenic 35.0%
ATTGATGAAGGATAACGTGA+TGG + tig0021860:108835-108854 Msa1394600:three_prime_UTR 35.0%
TTGATGAAGGATAACGTGAT+GGG + tig0021860:108836-108855 Msa1394600:three_prime_UTR 35.0%
!! AAGCTTTTGCTATCAAACTG+TGG + tig0021860:108873-108892 Msa1394600:three_prime_UTR 35.0%
TTGATATTGATGTCACTGAG+TGG - tig0021860:108977-108996 None:intergenic 35.0%
TGGTGTCTGCTTTAACTATA+TGG + tig0021860:109027-109046 Msa1394600:three_prime_UTR 35.0%
GGTGTCTGCTTTAACTATAT+GGG + tig0021860:109028-109047 Msa1394600:three_prime_UTR 35.0%
GTGTCTGCTTTAACTATATG+GGG + tig0021860:109029-109048 Msa1394600:three_prime_UTR 35.0%
AGTTGGAAAACAAAGACTAG+TGG + tig0021860:109161-109180 Msa1394600:three_prime_UTR 35.0%
!! AAAGACTAGTGGAGTTTTGT+TGG + tig0021860:109172-109191 Msa1394600:three_prime_UTR 35.0%
!!! AAGACTAGTGGAGTTTTGTT+GGG + tig0021860:109173-109192 Msa1394600:three_prime_UTR 35.0%
AACAAATCAAAACCCATAGG+AGG - tig0021860:109237-109256 None:intergenic 35.0%
!! ATTATTGATGCTGCTTTCCA+TGG + tig0021860:109271-109290 Msa1394600:three_prime_UTR 35.0%
!!! GTAGCTGGCTAGTTTGTTTT+TGG + tig0021860:106429-106448 Msa1394600:five_prime_UTR 40.0%
! TTTGGAATTGGAACCTTTGG+TGG - tig0021860:106497-106516 None:intergenic 40.0%
!! GTTGGTGTCATGTTTGGAAT+TGG - tig0021860:106509-106528 None:intergenic 40.0%
TTCCAAACATGACACCAACT+TGG + tig0021860:106510-106529 Msa1394600:CDS 40.0%
GAAGAAAATTCAGGCCAAGT+TGG - tig0021860:106527-106546 None:intergenic 40.0%
!!! GGTGAGATGGTTTTAAGGTT+AGG - tig0021860:106563-106582 None:intergenic 40.0%
! TGAAGCATTACTTGGTGAGA+TGG - tig0021860:106576-106595 None:intergenic 40.0%
CATCATCGATGCTTCTATGA+AGG - tig0021860:106702-106721 None:intergenic 40.0%
!! CTTCATAGAAGCATCGATGA+TGG + tig0021860:106700-106719 Msa1394600:CDS 40.0%
AACCTCGTCTACACTAAACA+TGG - tig0021860:106789-106808 None:intergenic 40.0%
CAGCATCAATGATGACAAAG+AGG + tig0021860:106895-106914 Msa1394600:CDS 40.0%
TGATGACAAAGAGGAAGATG+AGG + tig0021860:106904-106923 Msa1394600:CDS 40.0%
GGTGAATGCAAACAGGAAAA+TGG + tig0021860:106980-106999 Msa1394600:CDS 40.0%
GAATGCAAACAGGAAAATGG+AGG + tig0021860:106983-107002 Msa1394600:CDS 40.0%
! CTCTTGGGGTCAGTAATTTT+TGG - tig0021860:107061-107080 None:intergenic 40.0%
CAAAAATTACTGACCCCAAG+AGG + tig0021860:107059-107078 Msa1394600:CDS 40.0%
! TAGTACCTTTTGACCCTCTT+GGG - tig0021860:107076-107095 None:intergenic 40.0%
ATTGAAACATGAGCTAGCAG+TGG + tig0021860:107327-107346 Msa1394600:intron 40.0%
ACGAAGTGTGACTTCATTAC+AGG + tig0021860:107504-107523 Msa1394600:CDS 40.0%
! GAAGATTTTGTCTTGGGCTA+GGG - tig0021860:107777-107796 None:intergenic 40.0%
! TGAAGATTTTGTCTTGGGCT+AGG - tig0021860:107778-107797 None:intergenic 40.0%
GCAATTGCAAGCTTAGTTAG+TGG - tig0021860:108029-108048 None:intergenic 40.0%
!! CTCATCAAGAAGCATTGAAG+AGG + tig0021860:108458-108477 Msa1394600:CDS 40.0%
! ACGTGATGGGAGAATATAAG+TGG + tig0021860:108849-108868 Msa1394600:three_prime_UTR 40.0%
ACCACTCAAAGTTGCATGAT+TGG + tig0021860:108929-108948 Msa1394600:three_prime_UTR 40.0%
TCCAATCATGCAACTTTGAG+TGG - tig0021860:108933-108952 None:intergenic 40.0%
!! TAAACAGTACTTGGTGGTGT+TGG + tig0021860:109007-109026 Msa1394600:three_prime_UTR 40.0%
!! GTTTTGTTGGGATGGATGAA+AGG + tig0021860:109185-109204 Msa1394600:three_prime_UTR 40.0%
AGTGAAATCTTGCCTCCTAT+GGG + tig0021860:109222-109241 Msa1394600:three_prime_UTR 40.0%
ATGTATGTGAAGGAGCCAGA+GGG - tig0021860:106236-106255 None:intergenic 45.0%
TATGTATGTGAAGGAGCCAG+AGG - tig0021860:106237-106256 None:intergenic 45.0%
TAAGGCAATTCCACTGTAGC+TGG + tig0021860:106414-106433 Msa1394600:five_prime_UTR 45.0%
AACAAACTAGCCAGCTACAG+TGG - tig0021860:106427-106446 None:intergenic 45.0%
TATGGCTCAATTGCCACCAA+AGG + tig0021860:106481-106500 Msa1394600:exon 45.0%
TCAACAAAACCCTTCATGGG+TGG + tig0021860:106610-106629 Msa1394600:CDS 45.0%
TATGAAGGTCACTGAGTCAC+TGG - tig0021860:106687-106706 None:intergenic 45.0%
GTCCATGTTTAGTGTAGACG+AGG + tig0021860:106784-106803 Msa1394600:CDS 45.0%
TTAGTGTAGACGAGGTTTCG+AGG + tig0021860:106792-106811 Msa1394600:CDS 45.0%
TGACAAAGAGGAAGATGAGG+AGG + tig0021860:106907-106926 Msa1394600:CDS 45.0%
!! GGGGTCAGTAATTTTTGGAC+TGG - tig0021860:107056-107075 None:intergenic 45.0%
! AGTACCTTTTGACCCTCTTG+GGG - tig0021860:107075-107094 None:intergenic 45.0%
! GTAGTACCTTTTGACCCTCT+TGG - tig0021860:107077-107096 None:intergenic 45.0%
CTGCACAAAGATCAAGAGTG+AGG + tig0021860:107455-107474 Msa1394600:CDS 45.0%
AAGTATCAGTGCTGTCACCA+CGG + tig0021860:107681-107700 Msa1394600:CDS 45.0%
TGATCCAAATATGCAACCCG+TGG - tig0021860:107701-107720 None:intergenic 45.0%
TTGTGGAACTTTGCACCGTA+CGG + tig0021860:108177-108196 Msa1394600:intron 45.0%
GATTCAACTCATGTGCCGTA+CGG - tig0021860:108195-108214 None:intergenic 45.0%
CATTGAAGAGGGAGATAGAG+AGG + tig0021860:108470-108489 Msa1394600:CDS 45.0%
TCACATCGTGGTTTAGGTGA+TGG - tig0021860:108565-108584 None:intergenic 45.0%
!!! CTAGTGGAGTTTTGTTGGGA+TGG + tig0021860:109177-109196 Msa1394600:three_prime_UTR 45.0%
TGTTGGGATGGATGAAAGGA+AGG + tig0021860:109189-109208 Msa1394600:three_prime_UTR 45.0%
CAGTGAAATCTTGCCTCCTA+TGG + tig0021860:109221-109240 Msa1394600:three_prime_UTR 45.0%
!!! AATTTAAAATAAATAAGTAA+AGG - tig0021860:107286-107305 None:intergenic 5.0%
!!! ATTTATTTTAAATTTTTTTC+TGG + tig0021860:107292-107311 Msa1394600:intron 5.0%
!!! ATAATATTATGATTATATTT+TGG + tig0021860:107620-107639 Msa1394600:intron 5.0%
!! GGCCAAGTTGGTGTCATGTT+TGG - tig0021860:106515-106534 None:intergenic 50.0%
GAAACTCGTCCACCCATGAA+GGG - tig0021860:106622-106641 None:intergenic 50.0%
AGAAACTCGTCCACCCATGA+AGG - tig0021860:106623-106642 None:intergenic 50.0%
ACTTCTCGTCCACCAGAAGA+GGG + tig0021860:106645-106664 Msa1394600:CDS 50.0%
!! TGATGGAGCATTGTCGTCGT+AGG + tig0021860:106717-106736 Msa1394600:CDS 50.0%
!! GATGGAGCATTGTCGTCGTA+GGG + tig0021860:106718-106737 Msa1394600:CDS 50.0%
! AATGTAGCTGATGGTGCTGG+TGG - tig0021860:106836-106855 None:intergenic 50.0%
! GACAATGTAGCTGATGGTGC+TGG - tig0021860:106839-106858 None:intergenic 50.0%
ACATGAGCTAGCAGTGGTGA+TGG + tig0021860:107333-107352 Msa1394600:intron 50.0%
AGTATCAGTGCTGTCACCAC+GGG + tig0021860:107682-107701 Msa1394600:CDS 50.0%
! GTCACCACGGGTTGCATATT+TGG + tig0021860:107694-107713 Msa1394600:CDS 50.0%
CTAGTTGCAGACACAGCACA+TGG - tig0021860:108326-108345 None:intergenic 50.0%
!! CGTGGTTTAGGTGATGGAGA+TGG - tig0021860:108559-108578 None:intergenic 50.0%
GACTTCTCGTCCACCAGAAG+AGG + tig0021860:106644-106663 Msa1394600:CDS 55.0%
CTTCTCGTCCACCAGAAGAG+GGG + tig0021860:106646-106665 Msa1394600:CDS 55.0%
! AAGAGGGGCACACAGACGTT+CGG + tig0021860:106661-106680 Msa1394600:CDS 55.0%
! GAGCATTGTCGTCGTAGGGA+TGG + tig0021860:106722-106741 Msa1394600:CDS 55.0%
CTGACCCCAAGAGGGTCAAA+AGG + tig0021860:107068-107087 Msa1394600:CDS 55.0%
AGAGGGAGATAGAGAGGCTG+AGG + tig0021860:108476-108495 Msa1394600:CDS 55.0%
TCTGTGTGCCCCTCTTCTGG+TGG - tig0021860:106657-106676 None:intergenic 60.0%
ACGTCTGTGTGCCCCTCTTC+TGG - tig0021860:106660-106679 None:intergenic 60.0%
!! TGGTGCTGGTGGTGGCATCA+TGG - tig0021860:106825-106844 None:intergenic 60.0%
!! GTAGCTGATGGTGCTGGTGG+TGG - tig0021860:106833-106852 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021860 gene 106225 109340 106225 ID=Msa1394600;Name=Msa1394600
tig0021860 mRNA 106225 109340 106225 ID=Msa1394600-mRNA-1;Parent=Msa1394600;Name=Msa1394600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=257|1|1|1|1|1|4|713|331
tig0021860 exon 106225 107089 106225 ID=Msa1394600-mRNA-1:exon:14387;Parent=Msa1394600-mRNA-1
tig0021860 exon 107435 107525 107435 ID=Msa1394600-mRNA-1:exon:14388;Parent=Msa1394600-mRNA-1
tig0021860 exon 107677 107803 107677 ID=Msa1394600-mRNA-1:exon:14389;Parent=Msa1394600-mRNA-1
tig0021860 exon 108458 109340 108458 ID=Msa1394600-mRNA-1:exon:14390;Parent=Msa1394600-mRNA-1
tig0021860 five_prime_UTR 106225 106481 106225 ID=Msa1394600-mRNA-1:five_prime_utr;Parent=Msa1394600-mRNA-1
tig0021860 CDS 106482 107089 106482 ID=Msa1394600-mRNA-1:cds;Parent=Msa1394600-mRNA-1
tig0021860 CDS 107435 107525 107435 ID=Msa1394600-mRNA-1:cds;Parent=Msa1394600-mRNA-1
tig0021860 CDS 107677 107803 107677 ID=Msa1394600-mRNA-1:cds;Parent=Msa1394600-mRNA-1
tig0021860 CDS 108458 108627 108458 ID=Msa1394600-mRNA-1:cds;Parent=Msa1394600-mRNA-1
tig0021860 three_prime_UTR 108628 109340 108628 ID=Msa1394600-mRNA-1:three_prime_utr;Parent=Msa1394600-mRNA-1
Gene Sequence

>Msa1394600

ATGGCTCAATTGCCACCAAAGGTTCCAATTCCAAACATGACACCAACTTGGCCTGAATTTTCTTCTCACCAAAAAATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATACCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAAACCACGATGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA

Protein sequence

>Msa1394600

MAQLPPKVPIPNMTPTWPEFSSHQKMPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNTMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQQNIKNNATAAVVSPSPSPKPRCDNDTHIENEHLINV*