AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649190 MtrunA17_Chr4g0040891 98.187 331 3 1 1 331 1 328 0.0 667
Msa0649190 MtrunA17_Chr2g0325131 62.791 344 92 13 1 330 1 322 8.16e-119 346
Msa0649190 MtrunA17_Chr2g0316551 51.420 352 118 16 1 316 1 335 4.35e-90 273
Msa0649190 MtrunA17_Chr8g0380611 52.941 102 43 1 191 292 228 324 1.33e-23 100
Msa0649190 MtrunA17_Chr5g0432701 48.387 93 48 0 197 289 159 251 4.16e-20 89.7
Msa0649190 MtrunA17_Chr4g0036071 37.589 141 65 2 174 291 314 454 5.21e-20 90.5
Msa0649190 MtrunA17_Chr2g0329551 46.000 100 54 0 195 294 219 318 1.96e-19 88.6
Msa0649190 MtrunA17_Chr6g0463571 34.286 175 102 2 136 310 96 257 3.70e-19 86.3
Msa0649190 MtrunA17_Chr3g0107491 45.161 93 51 0 197 289 177 269 2.61e-18 84.7
Msa0649190 MtrunA17_Chr3g0128781 44.681 94 52 0 196 289 107 200 2.78e-17 81.3
Msa0649190 MtrunA17_Chr1g0156051 48.980 98 46 2 196 291 386 481 4.42e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649190 AT3G58120.1 55.556 351 114 12 1 331 1 329 5.78e-104 308
Msa0649190 AT2G42380.2 53.333 345 122 10 1 331 1 320 1.13e-100 299
Msa0649190 AT2G42380.1 49.855 345 123 11 1 331 1 309 2.67e-89 270
Msa0649190 AT3G58120.2 56.081 296 95 11 1 276 1 281 4.00e-87 263
Msa0649190 AT2G42380.5 53.873 284 104 7 1 276 1 265 6.51e-83 252
Msa0649190 AT2G42380.3 46.939 245 103 7 1 237 1 226 5.89e-53 174
Msa0649190 AT2G42380.4 46.939 245 103 7 1 237 1 226 5.89e-53 174
Msa0649190 AT1G58110.1 31.529 314 183 10 2 292 20 324 1.53e-28 114
Msa0649190 AT1G58110.2 31.529 314 183 10 2 292 20 324 1.53e-28 114
Msa0649190 AT1G43700.1 49.485 97 49 0 195 291 192 288 1.30e-20 91.3
Msa0649190 AT4G38900.2 47.368 95 50 0 195 289 392 486 9.54e-20 90.5
Msa0649190 AT4G38900.3 47.368 95 50 0 195 289 392 486 9.54e-20 90.5
Msa0649190 AT2G40620.1 45.263 95 52 0 195 289 146 240 5.21e-19 87.0
Msa0649190 AT1G06070.1 44.000 100 56 0 195 294 208 307 1.25e-18 86.7
Msa0649190 AT2G31370.5 28.346 254 154 6 60 294 54 298 1.38e-18 85.9
Msa0649190 AT2G31370.2 28.685 251 151 6 63 294 57 298 1.39e-18 86.3
Msa0649190 AT2G31370.4 28.685 251 151 6 63 294 57 298 1.39e-18 86.3
Msa0649190 AT2G31370.1 28.685 251 151 6 63 294 57 298 1.39e-18 86.3
Msa0649190 AT2G31370.7 28.685 251 151 6 63 294 57 298 1.39e-18 86.3
Msa0649190 AT2G31370.3 28.685 251 151 6 63 294 57 298 1.39e-18 86.3
Msa0649190 AT2G31370.6 28.685 251 151 6 63 294 57 298 1.39e-18 86.3
Msa0649190 AT1G06850.1 47.312 93 49 0 197 289 148 240 2.21e-18 85.1
Msa0649190 AT2G21230.4 45.361 97 53 0 195 291 368 464 2.27e-18 86.3
Msa0649190 AT2G21230.1 45.361 97 53 0 195 291 368 464 2.27e-18 86.3
Msa0649190 AT4G38900.1 44.554 101 50 1 195 289 392 492 1.51e-17 84.0
Msa0649190 AT5G04840.1 50.000 84 42 0 206 289 177 260 3.39e-17 81.3
Msa0649190 AT1G35490.2 41.509 106 56 2 185 289 158 258 8.33e-17 80.1
Msa0649190 AT1G35490.1 41.509 106 56 2 185 289 158 258 8.33e-17 80.1
Msa0649190 AT2G21230.3 41.748 103 54 1 195 291 368 470 4.95e-16 79.3
Msa0649190 AT2G21230.2 45.122 82 45 0 195 276 368 449 2.03e-14 74.3
Msa0649190 AT5G04840.2 51.389 72 35 0 206 277 177 248 9.42e-14 70.5
Msa0649190 AT5G07160.1 41.489 94 55 0 196 289 47 140 4.37e-12 63.5
Msa0649190 AT1G06850.2 70.455 44 13 0 197 240 148 191 5.20e-11 62.4
Msa0649190 AT2G12900.1 34.021 97 64 0 195 291 114 210 7.52e-11 62.4

Find 105 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTATTTGACGTATTAAT+TGG 0.161175 4_3:+55763646 Msa0649190:three_prime_UTR
TATTTCTTACTACTAAAATT+TGG 0.212403 4_3:+55763058 Msa0649190:three_prime_UTR
GTCACCACGGGTTGCATATT+TGG 0.213119 4_3:+55762040 Msa0649190:CDS
TGATGTGTTTACTTTATATA+AGG 0.232996 4_3:+55763245 Msa0649190:three_prime_UTR
TGGTGTCTGCTTTAACTATA+TGG 0.255843 4_3:+55763368 Msa0649190:three_prime_UTR
ACGTCTGTGTGCCCCTCTTC+TGG 0.291136 4_3:-55761000 None:intergenic
TCATTATCACATCGTGGTTT+AGG 0.296604 4_3:-55762909 None:intergenic
GGTGTCTGCTTTAACTATAT+GGG 0.324624 4_3:+55763369 Msa0649190:three_prime_UTR
CAGTGAAATCTTGCCTCCTA+TGG 0.346635 4_3:+55763562 Msa0649190:three_prime_UTR
GGTGAATGCAAACAGGAAAA+TGG 0.353861 4_3:+55761323 Msa0649190:CDS
GGCCAAGTTGGTGTCATGTT+TGG 0.363718 4_3:-55760855 None:intergenic
ATCACACATTTCATTTGTTA+AGG 0.364727 4_3:+55760739 Msa0649190:five_prime_UTR
GAATCTGATGAGGATGAAAT+TGG 0.366529 4_3:+55761302 Msa0649190:CDS
ACCACTCAAAGTTGCATGAT+TGG 0.375136 4_3:+55763270 Msa0649190:three_prime_UTR
ACGAAGTGTGACTTCATTAC+AGG 0.377047 4_3:+55761848 Msa0649190:CDS
ACAATCAACAAAACCCTTCA+TGG 0.391610 4_3:+55760949 Msa0649190:CDS
GATGTGTTTACTTTATATAA+GGG 0.394891 4_3:+55763246 Msa0649190:three_prime_UTR
GTTGGTGTCATGTTTGGAAT+TGG 0.398684 4_3:-55760849 None:intergenic
ATGTTTGGAATTGGAACCTT+TGG 0.398984 4_3:-55760840 None:intergenic
AATGATGAAGATGACAATAA+TGG 0.401593 4_3:+55761356 Msa0649190:CDS
TGCCTTTCTAACATTCCCTC+TGG 0.445979 4_3:+55760561 None:intergenic
GAAAAGTTTGAAGCATTACT+TGG 0.449386 4_3:-55760924 None:intergenic
TTAGGAAATTGAATTGATGA+AGG 0.452878 4_3:+55763164 Msa0649190:three_prime_UTR
TAAGGCAATTCCACTGTAGC+TGG 0.460035 4_3:+55760757 Msa0649190:five_prime_UTR
TGAAATTGGTGAATGCAAAC+AGG 0.473536 4_3:+55761316 Msa0649190:CDS
AATAATTAAGATGATTAAGA+AGG 0.473819 4_3:+55763092 Msa0649190:three_prime_UTR
AGTGAAATCTTGCCTCCTAT+GGG 0.474873 4_3:+55763563 Msa0649190:three_prime_UTR
ATTATTGATGCTGCTTTCCA+TGG 0.478771 4_3:+55763612 Msa0649190:three_prime_UTR
AAGAGGGGCACACAGACGTT+CGG 0.489835 4_3:+55761004 Msa0649190:CDS
GTAGCTGATGGTGCTGGTGG+TGG 0.496771 4_3:-55761173 None:intergenic
ATGGAGACAATGAGTTTGAA+AGG 0.498812 4_3:+55761084 Msa0649190:CDS
TGAAGCATTACTTGGTGAGA+TGG 0.500952 4_3:-55760916 None:intergenic
ACTACTAAAATTTGGAAGGA+AGG 0.502414 4_3:+55763066 Msa0649190:three_prime_UTR
TCACATCGTGGTTTAGGTGA+TGG 0.507950 4_3:-55762903 None:intergenic
TTATGATCAGAAGGAGTTGA+AGG 0.508247 4_3:-55761215 None:intergenic
GTGTCTGCTTTAACTATATG+GGG 0.511797 4_3:+55763370 Msa0649190:three_prime_UTR
TAAAGATGATTACATATCCA+TGG 0.514742 4_3:-55763629 None:intergenic
TGTTGGGATGGATGAAAGGA+AGG 0.518715 4_3:+55763530 Msa0649190:three_prime_UTR
TTCCAAACATGACACCAACT+TGG 0.521076 4_3:+55760853 Msa0649190:CDS
CTGACCCCAAGAGGGTCAAA+AGG 0.522349 4_3:+55761411 Msa0649190:CDS
ATAATTAAGATGATTAAGAA+GGG 0.523437 4_3:+55763093 Msa0649190:three_prime_UTR
GAGAAGAAATAAACAGTACT+TGG 0.525538 4_3:+55763339 Msa0649190:three_prime_UTR
TGATGGAGCATTGTCGTCGT+AGG 0.526258 4_3:+55761060 Msa0649190:CDS
TTTGGAATTGGAACCTTTGG+TGG 0.526554 4_3:-55760837 None:intergenic
GGGTTTATGTAATGTAATGT+TGG 0.526786 4_3:+55763390 Msa0649190:three_prime_UTR
TGGTGCTGGTGGTGGCATCA+TGG 0.526980 4_3:-55761165 None:intergenic
TATGAAGGTCACTGAGTCAC+TGG 0.527916 4_3:-55761027 None:intergenic
CAAGACAAAATCTTCAAAGA+TGG 0.531158 4_3:+55762128 Msa0649190:CDS
CATCATCGATGCTTCTATGA+AGG 0.532117 4_3:-55761042 None:intergenic
CTTCATAGAAGCATCGATGA+TGG 0.538192 4_3:+55761043 Msa0649190:CDS
TCCAATCATGCAACTTTGAG+TGG 0.539330 4_3:-55763271 None:intergenic
AGAAACTCGTCCACCCATGA+AGG 0.540302 4_3:-55760963 None:intergenic
TAAACAGTACTTGGTGGTGT+TGG 0.549994 4_3:+55763348 Msa0649190:three_prime_UTR
GACTTCTCGTCCACCAGAAG+AGG 0.550382 4_3:+55760987 Msa0649190:CDS
ATGTGTTTACTTTATATAAG+GGG 0.553319 4_3:+55763247 Msa0649190:three_prime_UTR
AGAGGGAGATAGAGAGGCTG+AGG 0.553494 4_3:+55762817 Msa0649190:CDS
GAGCATTGTCGTCGTAGGGA+TGG 0.556038 4_3:+55761065 Msa0649190:CDS
ACTTCTCGTCCACCAGAAGA+GGG 0.556593 4_3:+55760988 Msa0649190:CDS
TCTTACTACTAAAATTTGGA+AGG 0.559578 4_3:+55763062 Msa0649190:three_prime_UTR
AGTATCAGTGCTGTCACCAC+GGG 0.561461 4_3:+55762028 Msa0649190:CDS
CAATCAACAAAACCCTTCAT+GGG 0.563412 4_3:+55760950 Msa0649190:CDS
TGATGACAAAGAGGAAGATG+AGG 0.565693 4_3:+55761247 Msa0649190:CDS
AATGAAGAAGCATGTAGCAT+AGG 0.566269 4_3:-55760618 None:intergenic
TGACAAAGAGGAAGATGAGG+AGG 0.566303 4_3:+55761250 Msa0649190:CDS
AAGAAATAAACAGTACTTGG+TGG 0.568573 4_3:+55763342 Msa0649190:three_prime_UTR
GAAGAAAATTCAGGCCAAGT+TGG 0.570645 4_3:-55760867 None:intergenic
TTAGTGTAGACGAGGTTTCG+AGG 0.573188 4_3:+55761135 Msa0649190:CDS
AATATCAAGAATGACAACAT+AGG 0.574028 4_3:-55762992 None:intergenic
ATGTGATGGGAGAATATAAG+TGG 0.580132 4_3:+55763190 Msa0649190:three_prime_UTR
CATTGAAGAGGGAGATAGAG+AGG 0.587016 4_3:+55762811 Msa0649190:CDS
TTGATGCTGTTATGATCAGA+AGG 0.588109 4_3:-55761224 None:intergenic
AACAAACTAGCCAGCTACAG+TGG 0.588237 4_3:-55760767 None:intergenic
TTGCATATTTGGATCATCAG+AGG 0.590830 4_3:+55762051 Msa0649190:CDS
AGTTGGAAAACAAAGACTAG+TGG 0.592807 4_3:+55763502 Msa0649190:three_prime_UTR
TATGATCAGAAGGAGTTGAA+GGG 0.593074 4_3:-55761214 None:intergenic
CTCATCAAGAAGCATTGAAG+AGG 0.593087 4_3:+55762799 Msa0649190:CDS
TCTGTGTGCCCCTCTTCTGG+TGG 0.594474 4_3:-55760997 None:intergenic
ATTGATGAAGGATAATGTGA+TGG 0.595478 4_3:+55763176 Msa0649190:three_prime_UTR
AAAGACATGTATGTATGTGA+AGG 0.595881 4_3:-55760586 None:intergenic
GACAATGTAGCTGATGGTGC+TGG 0.596193 4_3:-55761179 None:intergenic
GTCCATGTTTAGTGTAGACG+AGG 0.601046 4_3:+55761127 Msa0649190:CDS
CAGCATCAATGATGACAAAG+AGG 0.602367 4_3:+55761238 Msa0649190:CDS
GATGGAGCATTGTCGTCGTA+GGG 0.605532 4_3:+55761061 Msa0649190:CDS
AACAAATCAAAACCCATAGG+AGG 0.608678 4_3:-55763575 None:intergenic
TCAACAAAACCCTTCATGGG+TGG 0.609845 4_3:+55760953 Msa0649190:CDS
TCTTATCAATGTTTGAGACA+TGG 0.612460 4_3:+55762953 Msa0649190:exon
AACCTCGTCTACACTAAACA+TGG 0.622608 4_3:-55761129 None:intergenic
AATGTAGCTGATGGTGCTGG+TGG 0.623330 4_3:-55761176 None:intergenic
AAGTATCAGTGCTGTCACCA+CGG 0.625333 4_3:+55762027 Msa0649190:CDS
TATGGCTCAATTGCCACCAA+AGG 0.629635 4_3:+55760824 Msa0649190:exon
TCATCAAGAAGCATTGAAGA+GGG 0.631177 4_3:+55762800 Msa0649190:CDS
GAAACTCGTCCACCCATGAA+GGG 0.631276 4_3:-55760962 None:intergenic
CTGCACAAAGATCAAGAGTG+AGG 0.635769 4_3:+55761799 Msa0649190:CDS
TTGATGAAGGATAATGTGAT+GGG 0.648021 4_3:+55763177 Msa0649190:three_prime_UTR
TACAACAAATCAAAACCCAT+AGG 0.659769 4_3:-55763578 None:intergenic
TTGATATTGATGTCACTGAG+TGG 0.663712 4_3:-55763315 None:intergenic
ATTGAAGCATGAATCTGATG+AGG 0.673573 4_3:+55761292 Msa0649190:CDS
ATGTATGTGAAGGAGCCAGA+GGG 0.675920 4_3:-55760576 None:intergenic
TATGTATGTGAAGGAGCCAG+AGG 0.683769 4_3:-55760577 None:intergenic
GAATGCAAACAGGAAAATGG+AGG 0.685882 4_3:+55761326 Msa0649190:CDS
CTTCTCGTCCACCAGAAGAG+GGG 0.695347 4_3:+55760989 Msa0649190:CDS
CGTGGTTTAGGTGATGGAGA+TGG 0.696148 4_3:-55762897 None:intergenic
TGAGTATCATTATCACATCG+TGG 0.696934 4_3:-55762915 None:intergenic
TTAGATGACAATGTAGCTGA+TGG 0.701045 4_3:-55761185 None:intergenic
TGATCCAAATATGCAACCCG+TGG 0.752305 4_3:-55762044 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATTAAACAATTTTG+AGG - chr4_3:55762402-55762421 None:intergenic 10.0%
!!! TGTTTAATTATTTTTACTAT+AGG + chr4_3:55762408-55762427 Msa0649190:intron 10.0%
!! GAATGAAAAAACTATATAAT+AGG + chr4_3:55762457-55762476 Msa0649190:intron 15.0%
!!! ATCTATAAGTATTATTTTGA+AGG - chr4_3:55762734-55762753 None:intergenic 15.0%
!!! CTTGATATTTTATTTTTAGA+AGG + chr4_3:55763006-55763025 Msa0649190:three_prime_UTR 15.0%
!!! AATTTTAGTAGTAAGAAATA+GGG - chr4_3:55763058-55763077 None:intergenic 15.0%
!!! AAATTTTAGTAGTAAGAAAT+AGG - chr4_3:55763059-55763078 None:intergenic 15.0%
!! TATTTCTTACTACTAAAATT+TGG + chr4_3:55763058-55763077 Msa0649190:three_prime_UTR 15.0%
!! AATAATTAAGATGATTAAGA+AGG + chr4_3:55763092-55763111 Msa0649190:three_prime_UTR 15.0%
!! ATAATTAAGATGATTAAGAA+GGG + chr4_3:55763093-55763112 Msa0649190:three_prime_UTR 15.0%
!!! TAATGGTAAGAAATTTTATT+AGG + chr4_3:55763146-55763165 Msa0649190:three_prime_UTR 15.0%
!!! TAATACACATATTTGGTTTT+AGG - chr4_3:55761479-55761498 None:intergenic 20.0%
!!! TATAATGTATTGATGAATGA+AGG + chr4_3:55762001-55762020 Msa0649190:intron 20.0%
!!! TATATATTGTTATTGATACG+TGG + chr4_3:55762252-55762271 Msa0649190:intron 20.0%
!! CTATATAATAGGCTTATAAA+TGG + chr4_3:55762468-55762487 Msa0649190:intron 20.0%
!!! GATATTTTATTTTTAGAAGG+TGG + chr4_3:55763009-55763028 Msa0649190:three_prime_UTR 20.0%
!!! GGTGGATATTTTTATTTTTT+TGG + chr4_3:55763027-55763046 Msa0649190:three_prime_UTR 20.0%
!! TGATGTGTTTACTTTATATA+AGG + chr4_3:55763245-55763264 Msa0649190:three_prime_UTR 20.0%
!! GATGTGTTTACTTTATATAA+GGG + chr4_3:55763246-55763265 Msa0649190:three_prime_UTR 20.0%
!! ATGTGTTTACTTTATATAAG+GGG + chr4_3:55763247-55763266 Msa0649190:three_prime_UTR 20.0%
!! CAACAAATACTAACAAAAAA+AGG - chr4_3:55763430-55763449 None:intergenic 20.0%
!!! TCTTTATTTGACGTATTAAT+TGG + chr4_3:55763646-55763665 Msa0649190:three_prime_UTR 20.0%
!! ATCACACATTTCATTTGTTA+AGG + chr4_3:55760739-55760758 Msa0649190:five_prime_UTR 25.0%
!! ATCTCTTTTTCTCTCAAATA+TGG + chr4_3:55760806-55760825 Msa0649190:exon 25.0%
!!! TTTTAAGGTTAGGCATTTTT+TGG - chr4_3:55760896-55760915 None:intergenic 25.0%
! AATGATGAAGATGACAATAA+TGG + chr4_3:55761356-55761375 Msa0649190:CDS 25.0%
! AACCAAATATGTGTATTACA+TGG + chr4_3:55761481-55761500 Msa0649190:intron 25.0%
!! TTATTAATTCTAGCTAGCTA+TGG + chr4_3:55761564-55761583 Msa0649190:intron 25.0%
!!! ATCTTTGAAGATTTTGTCTT+GGG - chr4_3:55762129-55762148 None:intergenic 25.0%
! GAAAGTTTAGACAGAATTAT+AGG + chr4_3:55762305-55762324 Msa0649190:intron 25.0%
! AATATCAAGAATGACAACAT+AGG - chr4_3:55762995-55763014 None:intergenic 25.0%
! TCTTACTACTAAAATTTGGA+AGG + chr4_3:55763062-55763081 Msa0649190:three_prime_UTR 25.0%
! GACAAAAAGTTGTAATGTAA+TGG + chr4_3:55763129-55763148 Msa0649190:three_prime_UTR 25.0%
! TTAGGAAATTGAATTGATGA+AGG + chr4_3:55763164-55763183 Msa0649190:three_prime_UTR 25.0%
! TAAAGATGATTACATATCCA+TGG - chr4_3:55763632-55763651 None:intergenic 25.0%
AAAGACATGTATGTATGTGA+AGG - chr4_3:55760589-55760608 None:intergenic 30.0%
! TTTTGGTGAGAAGAAAATTC+AGG - chr4_3:55760879-55760898 None:intergenic 30.0%
! GAAAAGTTTGAAGCATTACT+TGG - chr4_3:55760927-55760946 None:intergenic 30.0%
AGCCATGTAATACACATATT+TGG - chr4_3:55761486-55761505 None:intergenic 30.0%
TTACATTGAACATGACATGA+TGG + chr4_3:55761885-55761904 Msa0649190:intron 30.0%
!! CATCTTTGAAGATTTTGTCT+TGG - chr4_3:55762130-55762149 None:intergenic 30.0%
CAAGACAAAATCTTCAAAGA+TGG + chr4_3:55762128-55762147 Msa0649190:CDS 30.0%
GGTGAAATGAGAATATGTTA+AGG - chr4_3:55762164-55762183 None:intergenic 30.0%
ATACTACATGACAGTGTAAA+AGG - chr4_3:55762185-55762204 None:intergenic 30.0%
GTCATTAAGATTACTACTAG+TGG + chr4_3:55762695-55762714 Msa0649190:intron 30.0%
!! TGTTCTTGATGTTTTGTTGT+TGG - chr4_3:55762854-55762873 None:intergenic 30.0%
! TCTTATCAATGTTTGAGACA+TGG + chr4_3:55762953-55762972 Msa0649190:exon 30.0%
ACTACTAAAATTTGGAAGGA+AGG + chr4_3:55763066-55763085 Msa0649190:three_prime_UTR 30.0%
ATTGATGAAGGATAATGTGA+TGG + chr4_3:55763176-55763195 Msa0649190:three_prime_UTR 30.0%
TTGATGAAGGATAATGTGAT+GGG + chr4_3:55763177-55763196 Msa0649190:three_prime_UTR 30.0%
GAGAAGAAATAAACAGTACT+TGG + chr4_3:55763339-55763358 Msa0649190:three_prime_UTR 30.0%
AAGAAATAAACAGTACTTGG+TGG + chr4_3:55763342-55763361 Msa0649190:three_prime_UTR 30.0%
GGGTTTATGTAATGTAATGT+TGG + chr4_3:55763390-55763409 Msa0649190:three_prime_UTR 30.0%
!!! TGCTGTTTTTCAATTCAAGT+TGG + chr4_3:55763485-55763504 Msa0649190:three_prime_UTR 30.0%
TACAACAAATCAAAACCCAT+AGG - chr4_3:55763581-55763600 None:intergenic 30.0%
! AATGAAGAAGCATGTAGCAT+AGG - chr4_3:55760621-55760640 None:intergenic 35.0%
! ATGTTTGGAATTGGAACCTT+TGG - chr4_3:55760843-55760862 None:intergenic 35.0%
!! TACTTGGTGAGATGGTTTTA+AGG - chr4_3:55760911-55760930 None:intergenic 35.0%
!!! TGAAGGGTTTTGTTGATTGT+TGG - chr4_3:55760949-55760968 None:intergenic 35.0%
ACAATCAACAAAACCCTTCA+TGG + chr4_3:55760949-55760968 Msa0649190:CDS 35.0%
CAATCAACAAAACCCTTCAT+GGG + chr4_3:55760950-55760969 Msa0649190:CDS 35.0%
ATGGAGACAATGAGTTTGAA+AGG + chr4_3:55761084-55761103 Msa0649190:CDS 35.0%
TTAGATGACAATGTAGCTGA+TGG - chr4_3:55761188-55761207 None:intergenic 35.0%
TATGATCAGAAGGAGTTGAA+GGG - chr4_3:55761217-55761236 None:intergenic 35.0%
TTATGATCAGAAGGAGTTGA+AGG - chr4_3:55761218-55761237 None:intergenic 35.0%
TTGATGCTGTTATGATCAGA+AGG - chr4_3:55761227-55761246 None:intergenic 35.0%
ATTGAAGCATGAATCTGATG+AGG + chr4_3:55761292-55761311 Msa0649190:CDS 35.0%
GAATCTGATGAGGATGAAAT+TGG + chr4_3:55761302-55761321 Msa0649190:CDS 35.0%
TGAAATTGGTGAATGCAAAC+AGG + chr4_3:55761316-55761335 Msa0649190:CDS 35.0%
AAAAATTACTGACCCCAAGA+GGG + chr4_3:55761403-55761422 Msa0649190:CDS 35.0%
ATTGAAACATGAGCTAGTAG+TGG + chr4_3:55761671-55761690 Msa0649190:intron 35.0%
! GTTCCTTTTCATTCATGTGA+TGG + chr4_3:55761723-55761742 Msa0649190:intron 35.0%
TCACCATCACATGAATGAAA+AGG - chr4_3:55761729-55761748 None:intergenic 35.0%
TTGCATATTTGGATCATCAG+AGG + chr4_3:55762051-55762070 Msa0649190:CDS 35.0%
TAGGCTTATAAATGGAACAG+AGG + chr4_3:55762476-55762495 Msa0649190:intron 35.0%
AATGGAACAGAGGATAACAA+CGG + chr4_3:55762486-55762505 Msa0649190:intron 35.0%
!! CGGAATTAGCTTCTATTTTG+TGG + chr4_3:55762506-55762525 Msa0649190:intron 35.0%
CAGAGCAATTATTAGAGAAG+AGG + chr4_3:55762560-55762579 Msa0649190:intron 35.0%
!! TCATCAAGAAGCATTGAAGA+GGG + chr4_3:55762800-55762819 Msa0649190:CDS 35.0%
TCATTATCACATCGTGGTTT+AGG - chr4_3:55762912-55762931 None:intergenic 35.0%
TGAGTATCATTATCACATCG+TGG - chr4_3:55762918-55762937 None:intergenic 35.0%
! ATGTGATGGGAGAATATAAG+TGG + chr4_3:55763190-55763209 Msa0649190:three_prime_UTR 35.0%
!! AAGCTTTTGCTATCAAACTG+TGG + chr4_3:55763214-55763233 Msa0649190:three_prime_UTR 35.0%
TTGATATTGATGTCACTGAG+TGG - chr4_3:55763318-55763337 None:intergenic 35.0%
TGGTGTCTGCTTTAACTATA+TGG + chr4_3:55763368-55763387 Msa0649190:three_prime_UTR 35.0%
GGTGTCTGCTTTAACTATAT+GGG + chr4_3:55763369-55763388 Msa0649190:three_prime_UTR 35.0%
GTGTCTGCTTTAACTATATG+GGG + chr4_3:55763370-55763389 Msa0649190:three_prime_UTR 35.0%
AGTTGGAAAACAAAGACTAG+TGG + chr4_3:55763502-55763521 Msa0649190:three_prime_UTR 35.0%
!! AAAGACTAGTGGAGTTTTGT+TGG + chr4_3:55763513-55763532 Msa0649190:three_prime_UTR 35.0%
!!! AAGACTAGTGGAGTTTTGTT+GGG + chr4_3:55763514-55763533 Msa0649190:three_prime_UTR 35.0%
AACAAATCAAAACCCATAGG+AGG - chr4_3:55763578-55763597 None:intergenic 35.0%
!! ATTATTGATGCTGCTTTCCA+TGG + chr4_3:55763612-55763631 Msa0649190:three_prime_UTR 35.0%
!!! GTAGCTGGCTAGTTTGTTTT+TGG + chr4_3:55760772-55760791 Msa0649190:five_prime_UTR 40.0%
! TTTGGAATTGGAACCTTTGG+TGG - chr4_3:55760840-55760859 None:intergenic 40.0%
!! GTTGGTGTCATGTTTGGAAT+TGG - chr4_3:55760852-55760871 None:intergenic 40.0%
TTCCAAACATGACACCAACT+TGG + chr4_3:55760853-55760872 Msa0649190:CDS 40.0%
GAAGAAAATTCAGGCCAAGT+TGG - chr4_3:55760870-55760889 None:intergenic 40.0%
!!! GGTGAGATGGTTTTAAGGTT+AGG - chr4_3:55760906-55760925 None:intergenic 40.0%
! TGAAGCATTACTTGGTGAGA+TGG - chr4_3:55760919-55760938 None:intergenic 40.0%
CATCATCGATGCTTCTATGA+AGG - chr4_3:55761045-55761064 None:intergenic 40.0%
!! CTTCATAGAAGCATCGATGA+TGG + chr4_3:55761043-55761062 Msa0649190:CDS 40.0%
AACCTCGTCTACACTAAACA+TGG - chr4_3:55761132-55761151 None:intergenic 40.0%
CAGCATCAATGATGACAAAG+AGG + chr4_3:55761238-55761257 Msa0649190:CDS 40.0%
TGATGACAAAGAGGAAGATG+AGG + chr4_3:55761247-55761266 Msa0649190:CDS 40.0%
GGTGAATGCAAACAGGAAAA+TGG + chr4_3:55761323-55761342 Msa0649190:CDS 40.0%
GAATGCAAACAGGAAAATGG+AGG + chr4_3:55761326-55761345 Msa0649190:CDS 40.0%
! CTCTTGGGGTCAGTAATTTT+TGG - chr4_3:55761404-55761423 None:intergenic 40.0%
CAAAAATTACTGACCCCAAG+AGG + chr4_3:55761402-55761421 Msa0649190:CDS 40.0%
! TAGTACCTTTTGACCCTCTT+GGG - chr4_3:55761419-55761438 None:intergenic 40.0%
ACGAAGTGTGACTTCATTAC+AGG + chr4_3:55761848-55761867 Msa0649190:CDS 40.0%
! GAAGATTTTGTCTTGGGCTA+GGG - chr4_3:55762123-55762142 None:intergenic 40.0%
! TGAAGATTTTGTCTTGGGCT+AGG - chr4_3:55762124-55762143 None:intergenic 40.0%
GCAATTGCAAGCTTAGTTAG+TGG - chr4_3:55762375-55762394 None:intergenic 40.0%
TTGTGGAACTTTGCATCGTA+CGG + chr4_3:55762523-55762542 Msa0649190:intron 40.0%
!! CTCATCAAGAAGCATTGAAG+AGG + chr4_3:55762799-55762818 Msa0649190:CDS 40.0%
ACCACTCAAAGTTGCATGAT+TGG + chr4_3:55763270-55763289 Msa0649190:three_prime_UTR 40.0%
TCCAATCATGCAACTTTGAG+TGG - chr4_3:55763274-55763293 None:intergenic 40.0%
!! TAAACAGTACTTGGTGGTGT+TGG + chr4_3:55763348-55763367 Msa0649190:three_prime_UTR 40.0%
!! GTTTTGTTGGGATGGATGAA+AGG + chr4_3:55763526-55763545 Msa0649190:three_prime_UTR 40.0%
AGTGAAATCTTGCCTCCTAT+GGG + chr4_3:55763563-55763582 Msa0649190:three_prime_UTR 40.0%
ATGTATGTGAAGGAGCCAGA+GGG - chr4_3:55760579-55760598 None:intergenic 45.0%
TATGTATGTGAAGGAGCCAG+AGG - chr4_3:55760580-55760599 None:intergenic 45.0%
TAAGGCAATTCCACTGTAGC+TGG + chr4_3:55760757-55760776 Msa0649190:five_prime_UTR 45.0%
AACAAACTAGCCAGCTACAG+TGG - chr4_3:55760770-55760789 None:intergenic 45.0%
TATGGCTCAATTGCCACCAA+AGG + chr4_3:55760824-55760843 Msa0649190:exon 45.0%
TCAACAAAACCCTTCATGGG+TGG + chr4_3:55760953-55760972 Msa0649190:CDS 45.0%
TATGAAGGTCACTGAGTCAC+TGG - chr4_3:55761030-55761049 None:intergenic 45.0%
GTCCATGTTTAGTGTAGACG+AGG + chr4_3:55761127-55761146 Msa0649190:CDS 45.0%
TTAGTGTAGACGAGGTTTCG+AGG + chr4_3:55761135-55761154 Msa0649190:CDS 45.0%
TGACAAAGAGGAAGATGAGG+AGG + chr4_3:55761250-55761269 Msa0649190:CDS 45.0%
!! GGGGTCAGTAATTTTTGGAC+TGG - chr4_3:55761399-55761418 None:intergenic 45.0%
! AGTACCTTTTGACCCTCTTG+GGG - chr4_3:55761418-55761437 None:intergenic 45.0%
! GTAGTACCTTTTGACCCTCT+TGG - chr4_3:55761420-55761439 None:intergenic 45.0%
ACATGAGCTAGTAGTGGTGA+TGG + chr4_3:55761677-55761696 Msa0649190:intron 45.0%
CTGCACAAAGATCAAGAGTG+AGG + chr4_3:55761799-55761818 Msa0649190:CDS 45.0%
AAGTATCAGTGCTGTCACCA+CGG + chr4_3:55762027-55762046 Msa0649190:CDS 45.0%
TGATCCAAATATGCAACCCG+TGG - chr4_3:55762047-55762066 None:intergenic 45.0%
CATTGAAGAGGGAGATAGAG+AGG + chr4_3:55762811-55762830 Msa0649190:CDS 45.0%
TCACATCGTGGTTTAGGTGA+TGG - chr4_3:55762906-55762925 None:intergenic 45.0%
!!! CTAGTGGAGTTTTGTTGGGA+TGG + chr4_3:55763518-55763537 Msa0649190:three_prime_UTR 45.0%
TGTTGGGATGGATGAAAGGA+AGG + chr4_3:55763530-55763549 Msa0649190:three_prime_UTR 45.0%
CAGTGAAATCTTGCCTCCTA+TGG + chr4_3:55763562-55763581 Msa0649190:three_prime_UTR 45.0%
!!! AATTTAAAATAAATAAGTAA+AGG - chr4_3:55761630-55761649 None:intergenic 5.0%
!!! ATTTATTTTAAATTTTTTTC+TGG + chr4_3:55761636-55761655 Msa0649190:intron 5.0%
!! GGCCAAGTTGGTGTCATGTT+TGG - chr4_3:55760858-55760877 None:intergenic 50.0%
GAAACTCGTCCACCCATGAA+GGG - chr4_3:55760965-55760984 None:intergenic 50.0%
AGAAACTCGTCCACCCATGA+AGG - chr4_3:55760966-55760985 None:intergenic 50.0%
ACTTCTCGTCCACCAGAAGA+GGG + chr4_3:55760988-55761007 Msa0649190:CDS 50.0%
!! TGATGGAGCATTGTCGTCGT+AGG + chr4_3:55761060-55761079 Msa0649190:CDS 50.0%
!! GATGGAGCATTGTCGTCGTA+GGG + chr4_3:55761061-55761080 Msa0649190:CDS 50.0%
! AATGTAGCTGATGGTGCTGG+TGG - chr4_3:55761179-55761198 None:intergenic 50.0%
! GACAATGTAGCTGATGGTGC+TGG - chr4_3:55761182-55761201 None:intergenic 50.0%
AGTATCAGTGCTGTCACCAC+GGG + chr4_3:55762028-55762047 Msa0649190:CDS 50.0%
! GTCACCACGGGTTGCATATT+TGG + chr4_3:55762040-55762059 Msa0649190:CDS 50.0%
CTAGTTGCAGACACAGCACA+TGG - chr4_3:55762667-55762686 None:intergenic 50.0%
!! CGTGGTTTAGGTGATGGAGA+TGG - chr4_3:55762900-55762919 None:intergenic 50.0%
GACTTCTCGTCCACCAGAAG+AGG + chr4_3:55760987-55761006 Msa0649190:CDS 55.0%
CTTCTCGTCCACCAGAAGAG+GGG + chr4_3:55760989-55761008 Msa0649190:CDS 55.0%
! AAGAGGGGCACACAGACGTT+CGG + chr4_3:55761004-55761023 Msa0649190:CDS 55.0%
! GAGCATTGTCGTCGTAGGGA+TGG + chr4_3:55761065-55761084 Msa0649190:CDS 55.0%
CTGACCCCAAGAGGGTCAAA+AGG + chr4_3:55761411-55761430 Msa0649190:CDS 55.0%
AGAGGGAGATAGAGAGGCTG+AGG + chr4_3:55762817-55762836 Msa0649190:CDS 55.0%
TCTGTGTGCCCCTCTTCTGG+TGG - chr4_3:55761000-55761019 None:intergenic 60.0%
ACGTCTGTGTGCCCCTCTTC+TGG - chr4_3:55761003-55761022 None:intergenic 60.0%
!! TGGTGCTGGTGGTGGCATCA+TGG - chr4_3:55761168-55761187 None:intergenic 60.0%
!! GTAGCTGATGGTGCTGGTGG+TGG - chr4_3:55761176-55761195 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55760568 55763681 55760568 ID=Msa0649190;Name=Msa0649190
chr4_3 mRNA 55760568 55763681 55760568 ID=Msa0649190-mRNA-1;Parent=Msa0649190;Name=Msa0649190-mRNA-1;_AED=0.07;_eAED=0.07;_QI=257|1|1|1|1|1|4|713|331
chr4_3 exon 55760568 55761432 55760568 ID=Msa0649190-mRNA-1:exon:14342;Parent=Msa0649190-mRNA-1
chr4_3 exon 55761779 55761869 55761779 ID=Msa0649190-mRNA-1:exon:14343;Parent=Msa0649190-mRNA-1
chr4_3 exon 55762023 55762149 55762023 ID=Msa0649190-mRNA-1:exon:14344;Parent=Msa0649190-mRNA-1
chr4_3 exon 55762799 55763681 55762799 ID=Msa0649190-mRNA-1:exon:14345;Parent=Msa0649190-mRNA-1
chr4_3 five_prime_UTR 55760568 55760824 55760568 ID=Msa0649190-mRNA-1:five_prime_utr;Parent=Msa0649190-mRNA-1
chr4_3 CDS 55760825 55761432 55760825 ID=Msa0649190-mRNA-1:cds;Parent=Msa0649190-mRNA-1
chr4_3 CDS 55761779 55761869 55761779 ID=Msa0649190-mRNA-1:cds;Parent=Msa0649190-mRNA-1
chr4_3 CDS 55762023 55762149 55762023 ID=Msa0649190-mRNA-1:cds;Parent=Msa0649190-mRNA-1
chr4_3 CDS 55762799 55762968 55762799 ID=Msa0649190-mRNA-1:cds;Parent=Msa0649190-mRNA-1
chr4_3 three_prime_UTR 55762969 55763681 55762969 ID=Msa0649190-mRNA-1:three_prime_utr;Parent=Msa0649190-mRNA-1
Gene Sequence

>Msa0649190

ATGGCTCAATTGCCACCAAAGGTTCCAATTCCAAACATGACACCAACTTGGCCTGAATTTTCTTCTCACCAAAAAATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATGCCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAAACCACGATGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA

Protein sequence

>Msa0649190

MAQLPPKVPIPNMTPTWPEFSSHQKMPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNAMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQQNIKNNATAAVVSPSPSPKPRCDNDTHIENEHLINV*