Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649190 | XP_003607550.1 | 98.187 | 331 | 3 | 1 | 1 | 331 | 1 | 328 | 0.0 | 667 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649190 | sp|Q9M2K4|BZP61_ARATH | 55.556 | 351 | 114 | 12 | 1 | 331 | 1 | 329 | 5.69e-103 | 308 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0649190 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0608660 | Msa0649190 | 0.963735 | 1.888522e-122 | -8.615850e-47 |
Msa0649190 | Msa1394600 | 0.973198 | 5.044557e-136 | -8.615850e-47 |
Msa0434920 | Msa0649190 | 0.815917 | 7.228608e-52 | -8.615850e-47 |
Msa0478870 | Msa0649190 | 0.804555 | 2.042521e-49 | -8.615850e-47 |
Msa0328400 | Msa0649190 | 0.817149 | 3.830183e-52 | -8.615850e-47 |
Msa0328410 | Msa0649190 | 0.818011 | 2.448786e-52 | -8.615850e-47 |
Msa0555090 | Msa0649190 | 0.942470 | 6.789670e-102 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649190 | MtrunA17_Chr4g0040891 | 98.187 | 331 | 3 | 1 | 1 | 331 | 1 | 328 | 0.0 | 667 |
Msa0649190 | MtrunA17_Chr2g0325131 | 62.791 | 344 | 92 | 13 | 1 | 330 | 1 | 322 | 8.16e-119 | 346 |
Msa0649190 | MtrunA17_Chr2g0316551 | 51.420 | 352 | 118 | 16 | 1 | 316 | 1 | 335 | 4.35e-90 | 273 |
Msa0649190 | MtrunA17_Chr8g0380611 | 52.941 | 102 | 43 | 1 | 191 | 292 | 228 | 324 | 1.33e-23 | 100 |
Msa0649190 | MtrunA17_Chr5g0432701 | 48.387 | 93 | 48 | 0 | 197 | 289 | 159 | 251 | 4.16e-20 | 89.7 |
Msa0649190 | MtrunA17_Chr4g0036071 | 37.589 | 141 | 65 | 2 | 174 | 291 | 314 | 454 | 5.21e-20 | 90.5 |
Msa0649190 | MtrunA17_Chr2g0329551 | 46.000 | 100 | 54 | 0 | 195 | 294 | 219 | 318 | 1.96e-19 | 88.6 |
Msa0649190 | MtrunA17_Chr6g0463571 | 34.286 | 175 | 102 | 2 | 136 | 310 | 96 | 257 | 3.70e-19 | 86.3 |
Msa0649190 | MtrunA17_Chr3g0107491 | 45.161 | 93 | 51 | 0 | 197 | 289 | 177 | 269 | 2.61e-18 | 84.7 |
Msa0649190 | MtrunA17_Chr3g0128781 | 44.681 | 94 | 52 | 0 | 196 | 289 | 107 | 200 | 2.78e-17 | 81.3 |
Msa0649190 | MtrunA17_Chr1g0156051 | 48.980 | 98 | 46 | 2 | 196 | 291 | 386 | 481 | 4.42e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0649190 | AT3G58120.1 | 55.556 | 351 | 114 | 12 | 1 | 331 | 1 | 329 | 5.78e-104 | 308 |
Msa0649190 | AT2G42380.2 | 53.333 | 345 | 122 | 10 | 1 | 331 | 1 | 320 | 1.13e-100 | 299 |
Msa0649190 | AT2G42380.1 | 49.855 | 345 | 123 | 11 | 1 | 331 | 1 | 309 | 2.67e-89 | 270 |
Msa0649190 | AT3G58120.2 | 56.081 | 296 | 95 | 11 | 1 | 276 | 1 | 281 | 4.00e-87 | 263 |
Msa0649190 | AT2G42380.5 | 53.873 | 284 | 104 | 7 | 1 | 276 | 1 | 265 | 6.51e-83 | 252 |
Msa0649190 | AT2G42380.3 | 46.939 | 245 | 103 | 7 | 1 | 237 | 1 | 226 | 5.89e-53 | 174 |
Msa0649190 | AT2G42380.4 | 46.939 | 245 | 103 | 7 | 1 | 237 | 1 | 226 | 5.89e-53 | 174 |
Msa0649190 | AT1G58110.1 | 31.529 | 314 | 183 | 10 | 2 | 292 | 20 | 324 | 1.53e-28 | 114 |
Msa0649190 | AT1G58110.2 | 31.529 | 314 | 183 | 10 | 2 | 292 | 20 | 324 | 1.53e-28 | 114 |
Msa0649190 | AT1G43700.1 | 49.485 | 97 | 49 | 0 | 195 | 291 | 192 | 288 | 1.30e-20 | 91.3 |
Msa0649190 | AT4G38900.2 | 47.368 | 95 | 50 | 0 | 195 | 289 | 392 | 486 | 9.54e-20 | 90.5 |
Msa0649190 | AT4G38900.3 | 47.368 | 95 | 50 | 0 | 195 | 289 | 392 | 486 | 9.54e-20 | 90.5 |
Msa0649190 | AT2G40620.1 | 45.263 | 95 | 52 | 0 | 195 | 289 | 146 | 240 | 5.21e-19 | 87.0 |
Msa0649190 | AT1G06070.1 | 44.000 | 100 | 56 | 0 | 195 | 294 | 208 | 307 | 1.25e-18 | 86.7 |
Msa0649190 | AT2G31370.5 | 28.346 | 254 | 154 | 6 | 60 | 294 | 54 | 298 | 1.38e-18 | 85.9 |
Msa0649190 | AT2G31370.2 | 28.685 | 251 | 151 | 6 | 63 | 294 | 57 | 298 | 1.39e-18 | 86.3 |
Msa0649190 | AT2G31370.4 | 28.685 | 251 | 151 | 6 | 63 | 294 | 57 | 298 | 1.39e-18 | 86.3 |
Msa0649190 | AT2G31370.1 | 28.685 | 251 | 151 | 6 | 63 | 294 | 57 | 298 | 1.39e-18 | 86.3 |
Msa0649190 | AT2G31370.7 | 28.685 | 251 | 151 | 6 | 63 | 294 | 57 | 298 | 1.39e-18 | 86.3 |
Msa0649190 | AT2G31370.3 | 28.685 | 251 | 151 | 6 | 63 | 294 | 57 | 298 | 1.39e-18 | 86.3 |
Msa0649190 | AT2G31370.6 | 28.685 | 251 | 151 | 6 | 63 | 294 | 57 | 298 | 1.39e-18 | 86.3 |
Msa0649190 | AT1G06850.1 | 47.312 | 93 | 49 | 0 | 197 | 289 | 148 | 240 | 2.21e-18 | 85.1 |
Msa0649190 | AT2G21230.4 | 45.361 | 97 | 53 | 0 | 195 | 291 | 368 | 464 | 2.27e-18 | 86.3 |
Msa0649190 | AT2G21230.1 | 45.361 | 97 | 53 | 0 | 195 | 291 | 368 | 464 | 2.27e-18 | 86.3 |
Msa0649190 | AT4G38900.1 | 44.554 | 101 | 50 | 1 | 195 | 289 | 392 | 492 | 1.51e-17 | 84.0 |
Msa0649190 | AT5G04840.1 | 50.000 | 84 | 42 | 0 | 206 | 289 | 177 | 260 | 3.39e-17 | 81.3 |
Msa0649190 | AT1G35490.2 | 41.509 | 106 | 56 | 2 | 185 | 289 | 158 | 258 | 8.33e-17 | 80.1 |
Msa0649190 | AT1G35490.1 | 41.509 | 106 | 56 | 2 | 185 | 289 | 158 | 258 | 8.33e-17 | 80.1 |
Msa0649190 | AT2G21230.3 | 41.748 | 103 | 54 | 1 | 195 | 291 | 368 | 470 | 4.95e-16 | 79.3 |
Msa0649190 | AT2G21230.2 | 45.122 | 82 | 45 | 0 | 195 | 276 | 368 | 449 | 2.03e-14 | 74.3 |
Msa0649190 | AT5G04840.2 | 51.389 | 72 | 35 | 0 | 206 | 277 | 177 | 248 | 9.42e-14 | 70.5 |
Msa0649190 | AT5G07160.1 | 41.489 | 94 | 55 | 0 | 196 | 289 | 47 | 140 | 4.37e-12 | 63.5 |
Msa0649190 | AT1G06850.2 | 70.455 | 44 | 13 | 0 | 197 | 240 | 148 | 191 | 5.20e-11 | 62.4 |
Msa0649190 | AT2G12900.1 | 34.021 | 97 | 64 | 0 | 195 | 291 | 114 | 210 | 7.52e-11 | 62.4 |
Find 105 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTTATTTGACGTATTAAT+TGG | 0.161175 | 4_3:+55763646 | Msa0649190:three_prime_UTR |
TATTTCTTACTACTAAAATT+TGG | 0.212403 | 4_3:+55763058 | Msa0649190:three_prime_UTR |
GTCACCACGGGTTGCATATT+TGG | 0.213119 | 4_3:+55762040 | Msa0649190:CDS |
TGATGTGTTTACTTTATATA+AGG | 0.232996 | 4_3:+55763245 | Msa0649190:three_prime_UTR |
TGGTGTCTGCTTTAACTATA+TGG | 0.255843 | 4_3:+55763368 | Msa0649190:three_prime_UTR |
ACGTCTGTGTGCCCCTCTTC+TGG | 0.291136 | 4_3:-55761000 | None:intergenic |
TCATTATCACATCGTGGTTT+AGG | 0.296604 | 4_3:-55762909 | None:intergenic |
GGTGTCTGCTTTAACTATAT+GGG | 0.324624 | 4_3:+55763369 | Msa0649190:three_prime_UTR |
CAGTGAAATCTTGCCTCCTA+TGG | 0.346635 | 4_3:+55763562 | Msa0649190:three_prime_UTR |
GGTGAATGCAAACAGGAAAA+TGG | 0.353861 | 4_3:+55761323 | Msa0649190:CDS |
GGCCAAGTTGGTGTCATGTT+TGG | 0.363718 | 4_3:-55760855 | None:intergenic |
ATCACACATTTCATTTGTTA+AGG | 0.364727 | 4_3:+55760739 | Msa0649190:five_prime_UTR |
GAATCTGATGAGGATGAAAT+TGG | 0.366529 | 4_3:+55761302 | Msa0649190:CDS |
ACCACTCAAAGTTGCATGAT+TGG | 0.375136 | 4_3:+55763270 | Msa0649190:three_prime_UTR |
ACGAAGTGTGACTTCATTAC+AGG | 0.377047 | 4_3:+55761848 | Msa0649190:CDS |
ACAATCAACAAAACCCTTCA+TGG | 0.391610 | 4_3:+55760949 | Msa0649190:CDS |
GATGTGTTTACTTTATATAA+GGG | 0.394891 | 4_3:+55763246 | Msa0649190:three_prime_UTR |
GTTGGTGTCATGTTTGGAAT+TGG | 0.398684 | 4_3:-55760849 | None:intergenic |
ATGTTTGGAATTGGAACCTT+TGG | 0.398984 | 4_3:-55760840 | None:intergenic |
AATGATGAAGATGACAATAA+TGG | 0.401593 | 4_3:+55761356 | Msa0649190:CDS |
TGCCTTTCTAACATTCCCTC+TGG | 0.445979 | 4_3:+55760561 | None:intergenic |
GAAAAGTTTGAAGCATTACT+TGG | 0.449386 | 4_3:-55760924 | None:intergenic |
TTAGGAAATTGAATTGATGA+AGG | 0.452878 | 4_3:+55763164 | Msa0649190:three_prime_UTR |
TAAGGCAATTCCACTGTAGC+TGG | 0.460035 | 4_3:+55760757 | Msa0649190:five_prime_UTR |
TGAAATTGGTGAATGCAAAC+AGG | 0.473536 | 4_3:+55761316 | Msa0649190:CDS |
AATAATTAAGATGATTAAGA+AGG | 0.473819 | 4_3:+55763092 | Msa0649190:three_prime_UTR |
AGTGAAATCTTGCCTCCTAT+GGG | 0.474873 | 4_3:+55763563 | Msa0649190:three_prime_UTR |
ATTATTGATGCTGCTTTCCA+TGG | 0.478771 | 4_3:+55763612 | Msa0649190:three_prime_UTR |
AAGAGGGGCACACAGACGTT+CGG | 0.489835 | 4_3:+55761004 | Msa0649190:CDS |
GTAGCTGATGGTGCTGGTGG+TGG | 0.496771 | 4_3:-55761173 | None:intergenic |
ATGGAGACAATGAGTTTGAA+AGG | 0.498812 | 4_3:+55761084 | Msa0649190:CDS |
TGAAGCATTACTTGGTGAGA+TGG | 0.500952 | 4_3:-55760916 | None:intergenic |
ACTACTAAAATTTGGAAGGA+AGG | 0.502414 | 4_3:+55763066 | Msa0649190:three_prime_UTR |
TCACATCGTGGTTTAGGTGA+TGG | 0.507950 | 4_3:-55762903 | None:intergenic |
TTATGATCAGAAGGAGTTGA+AGG | 0.508247 | 4_3:-55761215 | None:intergenic |
GTGTCTGCTTTAACTATATG+GGG | 0.511797 | 4_3:+55763370 | Msa0649190:three_prime_UTR |
TAAAGATGATTACATATCCA+TGG | 0.514742 | 4_3:-55763629 | None:intergenic |
TGTTGGGATGGATGAAAGGA+AGG | 0.518715 | 4_3:+55763530 | Msa0649190:three_prime_UTR |
TTCCAAACATGACACCAACT+TGG | 0.521076 | 4_3:+55760853 | Msa0649190:CDS |
CTGACCCCAAGAGGGTCAAA+AGG | 0.522349 | 4_3:+55761411 | Msa0649190:CDS |
ATAATTAAGATGATTAAGAA+GGG | 0.523437 | 4_3:+55763093 | Msa0649190:three_prime_UTR |
GAGAAGAAATAAACAGTACT+TGG | 0.525538 | 4_3:+55763339 | Msa0649190:three_prime_UTR |
TGATGGAGCATTGTCGTCGT+AGG | 0.526258 | 4_3:+55761060 | Msa0649190:CDS |
TTTGGAATTGGAACCTTTGG+TGG | 0.526554 | 4_3:-55760837 | None:intergenic |
GGGTTTATGTAATGTAATGT+TGG | 0.526786 | 4_3:+55763390 | Msa0649190:three_prime_UTR |
TGGTGCTGGTGGTGGCATCA+TGG | 0.526980 | 4_3:-55761165 | None:intergenic |
TATGAAGGTCACTGAGTCAC+TGG | 0.527916 | 4_3:-55761027 | None:intergenic |
CAAGACAAAATCTTCAAAGA+TGG | 0.531158 | 4_3:+55762128 | Msa0649190:CDS |
CATCATCGATGCTTCTATGA+AGG | 0.532117 | 4_3:-55761042 | None:intergenic |
CTTCATAGAAGCATCGATGA+TGG | 0.538192 | 4_3:+55761043 | Msa0649190:CDS |
TCCAATCATGCAACTTTGAG+TGG | 0.539330 | 4_3:-55763271 | None:intergenic |
AGAAACTCGTCCACCCATGA+AGG | 0.540302 | 4_3:-55760963 | None:intergenic |
TAAACAGTACTTGGTGGTGT+TGG | 0.549994 | 4_3:+55763348 | Msa0649190:three_prime_UTR |
GACTTCTCGTCCACCAGAAG+AGG | 0.550382 | 4_3:+55760987 | Msa0649190:CDS |
ATGTGTTTACTTTATATAAG+GGG | 0.553319 | 4_3:+55763247 | Msa0649190:three_prime_UTR |
AGAGGGAGATAGAGAGGCTG+AGG | 0.553494 | 4_3:+55762817 | Msa0649190:CDS |
GAGCATTGTCGTCGTAGGGA+TGG | 0.556038 | 4_3:+55761065 | Msa0649190:CDS |
ACTTCTCGTCCACCAGAAGA+GGG | 0.556593 | 4_3:+55760988 | Msa0649190:CDS |
TCTTACTACTAAAATTTGGA+AGG | 0.559578 | 4_3:+55763062 | Msa0649190:three_prime_UTR |
AGTATCAGTGCTGTCACCAC+GGG | 0.561461 | 4_3:+55762028 | Msa0649190:CDS |
CAATCAACAAAACCCTTCAT+GGG | 0.563412 | 4_3:+55760950 | Msa0649190:CDS |
TGATGACAAAGAGGAAGATG+AGG | 0.565693 | 4_3:+55761247 | Msa0649190:CDS |
AATGAAGAAGCATGTAGCAT+AGG | 0.566269 | 4_3:-55760618 | None:intergenic |
TGACAAAGAGGAAGATGAGG+AGG | 0.566303 | 4_3:+55761250 | Msa0649190:CDS |
AAGAAATAAACAGTACTTGG+TGG | 0.568573 | 4_3:+55763342 | Msa0649190:three_prime_UTR |
GAAGAAAATTCAGGCCAAGT+TGG | 0.570645 | 4_3:-55760867 | None:intergenic |
TTAGTGTAGACGAGGTTTCG+AGG | 0.573188 | 4_3:+55761135 | Msa0649190:CDS |
AATATCAAGAATGACAACAT+AGG | 0.574028 | 4_3:-55762992 | None:intergenic |
ATGTGATGGGAGAATATAAG+TGG | 0.580132 | 4_3:+55763190 | Msa0649190:three_prime_UTR |
CATTGAAGAGGGAGATAGAG+AGG | 0.587016 | 4_3:+55762811 | Msa0649190:CDS |
TTGATGCTGTTATGATCAGA+AGG | 0.588109 | 4_3:-55761224 | None:intergenic |
AACAAACTAGCCAGCTACAG+TGG | 0.588237 | 4_3:-55760767 | None:intergenic |
TTGCATATTTGGATCATCAG+AGG | 0.590830 | 4_3:+55762051 | Msa0649190:CDS |
AGTTGGAAAACAAAGACTAG+TGG | 0.592807 | 4_3:+55763502 | Msa0649190:three_prime_UTR |
TATGATCAGAAGGAGTTGAA+GGG | 0.593074 | 4_3:-55761214 | None:intergenic |
CTCATCAAGAAGCATTGAAG+AGG | 0.593087 | 4_3:+55762799 | Msa0649190:CDS |
TCTGTGTGCCCCTCTTCTGG+TGG | 0.594474 | 4_3:-55760997 | None:intergenic |
ATTGATGAAGGATAATGTGA+TGG | 0.595478 | 4_3:+55763176 | Msa0649190:three_prime_UTR |
AAAGACATGTATGTATGTGA+AGG | 0.595881 | 4_3:-55760586 | None:intergenic |
GACAATGTAGCTGATGGTGC+TGG | 0.596193 | 4_3:-55761179 | None:intergenic |
GTCCATGTTTAGTGTAGACG+AGG | 0.601046 | 4_3:+55761127 | Msa0649190:CDS |
CAGCATCAATGATGACAAAG+AGG | 0.602367 | 4_3:+55761238 | Msa0649190:CDS |
GATGGAGCATTGTCGTCGTA+GGG | 0.605532 | 4_3:+55761061 | Msa0649190:CDS |
AACAAATCAAAACCCATAGG+AGG | 0.608678 | 4_3:-55763575 | None:intergenic |
TCAACAAAACCCTTCATGGG+TGG | 0.609845 | 4_3:+55760953 | Msa0649190:CDS |
TCTTATCAATGTTTGAGACA+TGG | 0.612460 | 4_3:+55762953 | Msa0649190:exon |
AACCTCGTCTACACTAAACA+TGG | 0.622608 | 4_3:-55761129 | None:intergenic |
AATGTAGCTGATGGTGCTGG+TGG | 0.623330 | 4_3:-55761176 | None:intergenic |
AAGTATCAGTGCTGTCACCA+CGG | 0.625333 | 4_3:+55762027 | Msa0649190:CDS |
TATGGCTCAATTGCCACCAA+AGG | 0.629635 | 4_3:+55760824 | Msa0649190:exon |
TCATCAAGAAGCATTGAAGA+GGG | 0.631177 | 4_3:+55762800 | Msa0649190:CDS |
GAAACTCGTCCACCCATGAA+GGG | 0.631276 | 4_3:-55760962 | None:intergenic |
CTGCACAAAGATCAAGAGTG+AGG | 0.635769 | 4_3:+55761799 | Msa0649190:CDS |
TTGATGAAGGATAATGTGAT+GGG | 0.648021 | 4_3:+55763177 | Msa0649190:three_prime_UTR |
TACAACAAATCAAAACCCAT+AGG | 0.659769 | 4_3:-55763578 | None:intergenic |
TTGATATTGATGTCACTGAG+TGG | 0.663712 | 4_3:-55763315 | None:intergenic |
ATTGAAGCATGAATCTGATG+AGG | 0.673573 | 4_3:+55761292 | Msa0649190:CDS |
ATGTATGTGAAGGAGCCAGA+GGG | 0.675920 | 4_3:-55760576 | None:intergenic |
TATGTATGTGAAGGAGCCAG+AGG | 0.683769 | 4_3:-55760577 | None:intergenic |
GAATGCAAACAGGAAAATGG+AGG | 0.685882 | 4_3:+55761326 | Msa0649190:CDS |
CTTCTCGTCCACCAGAAGAG+GGG | 0.695347 | 4_3:+55760989 | Msa0649190:CDS |
CGTGGTTTAGGTGATGGAGA+TGG | 0.696148 | 4_3:-55762897 | None:intergenic |
TGAGTATCATTATCACATCG+TGG | 0.696934 | 4_3:-55762915 | None:intergenic |
TTAGATGACAATGTAGCTGA+TGG | 0.701045 | 4_3:-55761185 | None:intergenic |
TGATCCAAATATGCAACCCG+TGG | 0.752305 | 4_3:-55762044 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATAATTAAACAATTTTG+AGG | - | chr4_3:55762402-55762421 | None:intergenic | 10.0% |
!!! | TGTTTAATTATTTTTACTAT+AGG | + | chr4_3:55762408-55762427 | Msa0649190:intron | 10.0% |
!! | GAATGAAAAAACTATATAAT+AGG | + | chr4_3:55762457-55762476 | Msa0649190:intron | 15.0% |
!!! | ATCTATAAGTATTATTTTGA+AGG | - | chr4_3:55762734-55762753 | None:intergenic | 15.0% |
!!! | CTTGATATTTTATTTTTAGA+AGG | + | chr4_3:55763006-55763025 | Msa0649190:three_prime_UTR | 15.0% |
!!! | AATTTTAGTAGTAAGAAATA+GGG | - | chr4_3:55763058-55763077 | None:intergenic | 15.0% |
!!! | AAATTTTAGTAGTAAGAAAT+AGG | - | chr4_3:55763059-55763078 | None:intergenic | 15.0% |
!! | TATTTCTTACTACTAAAATT+TGG | + | chr4_3:55763058-55763077 | Msa0649190:three_prime_UTR | 15.0% |
!! | AATAATTAAGATGATTAAGA+AGG | + | chr4_3:55763092-55763111 | Msa0649190:three_prime_UTR | 15.0% |
!! | ATAATTAAGATGATTAAGAA+GGG | + | chr4_3:55763093-55763112 | Msa0649190:three_prime_UTR | 15.0% |
!!! | TAATGGTAAGAAATTTTATT+AGG | + | chr4_3:55763146-55763165 | Msa0649190:three_prime_UTR | 15.0% |
!!! | TAATACACATATTTGGTTTT+AGG | - | chr4_3:55761479-55761498 | None:intergenic | 20.0% |
!!! | TATAATGTATTGATGAATGA+AGG | + | chr4_3:55762001-55762020 | Msa0649190:intron | 20.0% |
!!! | TATATATTGTTATTGATACG+TGG | + | chr4_3:55762252-55762271 | Msa0649190:intron | 20.0% |
!! | CTATATAATAGGCTTATAAA+TGG | + | chr4_3:55762468-55762487 | Msa0649190:intron | 20.0% |
!!! | GATATTTTATTTTTAGAAGG+TGG | + | chr4_3:55763009-55763028 | Msa0649190:three_prime_UTR | 20.0% |
!!! | GGTGGATATTTTTATTTTTT+TGG | + | chr4_3:55763027-55763046 | Msa0649190:three_prime_UTR | 20.0% |
!! | TGATGTGTTTACTTTATATA+AGG | + | chr4_3:55763245-55763264 | Msa0649190:three_prime_UTR | 20.0% |
!! | GATGTGTTTACTTTATATAA+GGG | + | chr4_3:55763246-55763265 | Msa0649190:three_prime_UTR | 20.0% |
!! | ATGTGTTTACTTTATATAAG+GGG | + | chr4_3:55763247-55763266 | Msa0649190:three_prime_UTR | 20.0% |
!! | CAACAAATACTAACAAAAAA+AGG | - | chr4_3:55763430-55763449 | None:intergenic | 20.0% |
!!! | TCTTTATTTGACGTATTAAT+TGG | + | chr4_3:55763646-55763665 | Msa0649190:three_prime_UTR | 20.0% |
!! | ATCACACATTTCATTTGTTA+AGG | + | chr4_3:55760739-55760758 | Msa0649190:five_prime_UTR | 25.0% |
!! | ATCTCTTTTTCTCTCAAATA+TGG | + | chr4_3:55760806-55760825 | Msa0649190:exon | 25.0% |
!!! | TTTTAAGGTTAGGCATTTTT+TGG | - | chr4_3:55760896-55760915 | None:intergenic | 25.0% |
! | AATGATGAAGATGACAATAA+TGG | + | chr4_3:55761356-55761375 | Msa0649190:CDS | 25.0% |
! | AACCAAATATGTGTATTACA+TGG | + | chr4_3:55761481-55761500 | Msa0649190:intron | 25.0% |
!! | TTATTAATTCTAGCTAGCTA+TGG | + | chr4_3:55761564-55761583 | Msa0649190:intron | 25.0% |
!!! | ATCTTTGAAGATTTTGTCTT+GGG | - | chr4_3:55762129-55762148 | None:intergenic | 25.0% |
! | GAAAGTTTAGACAGAATTAT+AGG | + | chr4_3:55762305-55762324 | Msa0649190:intron | 25.0% |
! | AATATCAAGAATGACAACAT+AGG | - | chr4_3:55762995-55763014 | None:intergenic | 25.0% |
! | TCTTACTACTAAAATTTGGA+AGG | + | chr4_3:55763062-55763081 | Msa0649190:three_prime_UTR | 25.0% |
! | GACAAAAAGTTGTAATGTAA+TGG | + | chr4_3:55763129-55763148 | Msa0649190:three_prime_UTR | 25.0% |
! | TTAGGAAATTGAATTGATGA+AGG | + | chr4_3:55763164-55763183 | Msa0649190:three_prime_UTR | 25.0% |
! | TAAAGATGATTACATATCCA+TGG | - | chr4_3:55763632-55763651 | None:intergenic | 25.0% |
AAAGACATGTATGTATGTGA+AGG | - | chr4_3:55760589-55760608 | None:intergenic | 30.0% | |
! | TTTTGGTGAGAAGAAAATTC+AGG | - | chr4_3:55760879-55760898 | None:intergenic | 30.0% |
! | GAAAAGTTTGAAGCATTACT+TGG | - | chr4_3:55760927-55760946 | None:intergenic | 30.0% |
AGCCATGTAATACACATATT+TGG | - | chr4_3:55761486-55761505 | None:intergenic | 30.0% | |
TTACATTGAACATGACATGA+TGG | + | chr4_3:55761885-55761904 | Msa0649190:intron | 30.0% | |
!! | CATCTTTGAAGATTTTGTCT+TGG | - | chr4_3:55762130-55762149 | None:intergenic | 30.0% |
CAAGACAAAATCTTCAAAGA+TGG | + | chr4_3:55762128-55762147 | Msa0649190:CDS | 30.0% | |
GGTGAAATGAGAATATGTTA+AGG | - | chr4_3:55762164-55762183 | None:intergenic | 30.0% | |
ATACTACATGACAGTGTAAA+AGG | - | chr4_3:55762185-55762204 | None:intergenic | 30.0% | |
GTCATTAAGATTACTACTAG+TGG | + | chr4_3:55762695-55762714 | Msa0649190:intron | 30.0% | |
!! | TGTTCTTGATGTTTTGTTGT+TGG | - | chr4_3:55762854-55762873 | None:intergenic | 30.0% |
! | TCTTATCAATGTTTGAGACA+TGG | + | chr4_3:55762953-55762972 | Msa0649190:exon | 30.0% |
ACTACTAAAATTTGGAAGGA+AGG | + | chr4_3:55763066-55763085 | Msa0649190:three_prime_UTR | 30.0% | |
ATTGATGAAGGATAATGTGA+TGG | + | chr4_3:55763176-55763195 | Msa0649190:three_prime_UTR | 30.0% | |
TTGATGAAGGATAATGTGAT+GGG | + | chr4_3:55763177-55763196 | Msa0649190:three_prime_UTR | 30.0% | |
GAGAAGAAATAAACAGTACT+TGG | + | chr4_3:55763339-55763358 | Msa0649190:three_prime_UTR | 30.0% | |
AAGAAATAAACAGTACTTGG+TGG | + | chr4_3:55763342-55763361 | Msa0649190:three_prime_UTR | 30.0% | |
GGGTTTATGTAATGTAATGT+TGG | + | chr4_3:55763390-55763409 | Msa0649190:three_prime_UTR | 30.0% | |
!!! | TGCTGTTTTTCAATTCAAGT+TGG | + | chr4_3:55763485-55763504 | Msa0649190:three_prime_UTR | 30.0% |
TACAACAAATCAAAACCCAT+AGG | - | chr4_3:55763581-55763600 | None:intergenic | 30.0% | |
! | AATGAAGAAGCATGTAGCAT+AGG | - | chr4_3:55760621-55760640 | None:intergenic | 35.0% |
! | ATGTTTGGAATTGGAACCTT+TGG | - | chr4_3:55760843-55760862 | None:intergenic | 35.0% |
!! | TACTTGGTGAGATGGTTTTA+AGG | - | chr4_3:55760911-55760930 | None:intergenic | 35.0% |
!!! | TGAAGGGTTTTGTTGATTGT+TGG | - | chr4_3:55760949-55760968 | None:intergenic | 35.0% |
ACAATCAACAAAACCCTTCA+TGG | + | chr4_3:55760949-55760968 | Msa0649190:CDS | 35.0% | |
CAATCAACAAAACCCTTCAT+GGG | + | chr4_3:55760950-55760969 | Msa0649190:CDS | 35.0% | |
ATGGAGACAATGAGTTTGAA+AGG | + | chr4_3:55761084-55761103 | Msa0649190:CDS | 35.0% | |
TTAGATGACAATGTAGCTGA+TGG | - | chr4_3:55761188-55761207 | None:intergenic | 35.0% | |
TATGATCAGAAGGAGTTGAA+GGG | - | chr4_3:55761217-55761236 | None:intergenic | 35.0% | |
TTATGATCAGAAGGAGTTGA+AGG | - | chr4_3:55761218-55761237 | None:intergenic | 35.0% | |
TTGATGCTGTTATGATCAGA+AGG | - | chr4_3:55761227-55761246 | None:intergenic | 35.0% | |
ATTGAAGCATGAATCTGATG+AGG | + | chr4_3:55761292-55761311 | Msa0649190:CDS | 35.0% | |
GAATCTGATGAGGATGAAAT+TGG | + | chr4_3:55761302-55761321 | Msa0649190:CDS | 35.0% | |
TGAAATTGGTGAATGCAAAC+AGG | + | chr4_3:55761316-55761335 | Msa0649190:CDS | 35.0% | |
AAAAATTACTGACCCCAAGA+GGG | + | chr4_3:55761403-55761422 | Msa0649190:CDS | 35.0% | |
ATTGAAACATGAGCTAGTAG+TGG | + | chr4_3:55761671-55761690 | Msa0649190:intron | 35.0% | |
! | GTTCCTTTTCATTCATGTGA+TGG | + | chr4_3:55761723-55761742 | Msa0649190:intron | 35.0% |
TCACCATCACATGAATGAAA+AGG | - | chr4_3:55761729-55761748 | None:intergenic | 35.0% | |
TTGCATATTTGGATCATCAG+AGG | + | chr4_3:55762051-55762070 | Msa0649190:CDS | 35.0% | |
TAGGCTTATAAATGGAACAG+AGG | + | chr4_3:55762476-55762495 | Msa0649190:intron | 35.0% | |
AATGGAACAGAGGATAACAA+CGG | + | chr4_3:55762486-55762505 | Msa0649190:intron | 35.0% | |
!! | CGGAATTAGCTTCTATTTTG+TGG | + | chr4_3:55762506-55762525 | Msa0649190:intron | 35.0% |
CAGAGCAATTATTAGAGAAG+AGG | + | chr4_3:55762560-55762579 | Msa0649190:intron | 35.0% | |
!! | TCATCAAGAAGCATTGAAGA+GGG | + | chr4_3:55762800-55762819 | Msa0649190:CDS | 35.0% |
TCATTATCACATCGTGGTTT+AGG | - | chr4_3:55762912-55762931 | None:intergenic | 35.0% | |
TGAGTATCATTATCACATCG+TGG | - | chr4_3:55762918-55762937 | None:intergenic | 35.0% | |
! | ATGTGATGGGAGAATATAAG+TGG | + | chr4_3:55763190-55763209 | Msa0649190:three_prime_UTR | 35.0% |
!! | AAGCTTTTGCTATCAAACTG+TGG | + | chr4_3:55763214-55763233 | Msa0649190:three_prime_UTR | 35.0% |
TTGATATTGATGTCACTGAG+TGG | - | chr4_3:55763318-55763337 | None:intergenic | 35.0% | |
TGGTGTCTGCTTTAACTATA+TGG | + | chr4_3:55763368-55763387 | Msa0649190:three_prime_UTR | 35.0% | |
GGTGTCTGCTTTAACTATAT+GGG | + | chr4_3:55763369-55763388 | Msa0649190:three_prime_UTR | 35.0% | |
GTGTCTGCTTTAACTATATG+GGG | + | chr4_3:55763370-55763389 | Msa0649190:three_prime_UTR | 35.0% | |
AGTTGGAAAACAAAGACTAG+TGG | + | chr4_3:55763502-55763521 | Msa0649190:three_prime_UTR | 35.0% | |
!! | AAAGACTAGTGGAGTTTTGT+TGG | + | chr4_3:55763513-55763532 | Msa0649190:three_prime_UTR | 35.0% |
!!! | AAGACTAGTGGAGTTTTGTT+GGG | + | chr4_3:55763514-55763533 | Msa0649190:three_prime_UTR | 35.0% |
AACAAATCAAAACCCATAGG+AGG | - | chr4_3:55763578-55763597 | None:intergenic | 35.0% | |
!! | ATTATTGATGCTGCTTTCCA+TGG | + | chr4_3:55763612-55763631 | Msa0649190:three_prime_UTR | 35.0% |
!!! | GTAGCTGGCTAGTTTGTTTT+TGG | + | chr4_3:55760772-55760791 | Msa0649190:five_prime_UTR | 40.0% |
! | TTTGGAATTGGAACCTTTGG+TGG | - | chr4_3:55760840-55760859 | None:intergenic | 40.0% |
!! | GTTGGTGTCATGTTTGGAAT+TGG | - | chr4_3:55760852-55760871 | None:intergenic | 40.0% |
TTCCAAACATGACACCAACT+TGG | + | chr4_3:55760853-55760872 | Msa0649190:CDS | 40.0% | |
GAAGAAAATTCAGGCCAAGT+TGG | - | chr4_3:55760870-55760889 | None:intergenic | 40.0% | |
!!! | GGTGAGATGGTTTTAAGGTT+AGG | - | chr4_3:55760906-55760925 | None:intergenic | 40.0% |
! | TGAAGCATTACTTGGTGAGA+TGG | - | chr4_3:55760919-55760938 | None:intergenic | 40.0% |
CATCATCGATGCTTCTATGA+AGG | - | chr4_3:55761045-55761064 | None:intergenic | 40.0% | |
!! | CTTCATAGAAGCATCGATGA+TGG | + | chr4_3:55761043-55761062 | Msa0649190:CDS | 40.0% |
AACCTCGTCTACACTAAACA+TGG | - | chr4_3:55761132-55761151 | None:intergenic | 40.0% | |
CAGCATCAATGATGACAAAG+AGG | + | chr4_3:55761238-55761257 | Msa0649190:CDS | 40.0% | |
TGATGACAAAGAGGAAGATG+AGG | + | chr4_3:55761247-55761266 | Msa0649190:CDS | 40.0% | |
GGTGAATGCAAACAGGAAAA+TGG | + | chr4_3:55761323-55761342 | Msa0649190:CDS | 40.0% | |
GAATGCAAACAGGAAAATGG+AGG | + | chr4_3:55761326-55761345 | Msa0649190:CDS | 40.0% | |
! | CTCTTGGGGTCAGTAATTTT+TGG | - | chr4_3:55761404-55761423 | None:intergenic | 40.0% |
CAAAAATTACTGACCCCAAG+AGG | + | chr4_3:55761402-55761421 | Msa0649190:CDS | 40.0% | |
! | TAGTACCTTTTGACCCTCTT+GGG | - | chr4_3:55761419-55761438 | None:intergenic | 40.0% |
ACGAAGTGTGACTTCATTAC+AGG | + | chr4_3:55761848-55761867 | Msa0649190:CDS | 40.0% | |
! | GAAGATTTTGTCTTGGGCTA+GGG | - | chr4_3:55762123-55762142 | None:intergenic | 40.0% |
! | TGAAGATTTTGTCTTGGGCT+AGG | - | chr4_3:55762124-55762143 | None:intergenic | 40.0% |
GCAATTGCAAGCTTAGTTAG+TGG | - | chr4_3:55762375-55762394 | None:intergenic | 40.0% | |
TTGTGGAACTTTGCATCGTA+CGG | + | chr4_3:55762523-55762542 | Msa0649190:intron | 40.0% | |
!! | CTCATCAAGAAGCATTGAAG+AGG | + | chr4_3:55762799-55762818 | Msa0649190:CDS | 40.0% |
ACCACTCAAAGTTGCATGAT+TGG | + | chr4_3:55763270-55763289 | Msa0649190:three_prime_UTR | 40.0% | |
TCCAATCATGCAACTTTGAG+TGG | - | chr4_3:55763274-55763293 | None:intergenic | 40.0% | |
!! | TAAACAGTACTTGGTGGTGT+TGG | + | chr4_3:55763348-55763367 | Msa0649190:three_prime_UTR | 40.0% |
!! | GTTTTGTTGGGATGGATGAA+AGG | + | chr4_3:55763526-55763545 | Msa0649190:three_prime_UTR | 40.0% |
AGTGAAATCTTGCCTCCTAT+GGG | + | chr4_3:55763563-55763582 | Msa0649190:three_prime_UTR | 40.0% | |
ATGTATGTGAAGGAGCCAGA+GGG | - | chr4_3:55760579-55760598 | None:intergenic | 45.0% | |
TATGTATGTGAAGGAGCCAG+AGG | - | chr4_3:55760580-55760599 | None:intergenic | 45.0% | |
TAAGGCAATTCCACTGTAGC+TGG | + | chr4_3:55760757-55760776 | Msa0649190:five_prime_UTR | 45.0% | |
AACAAACTAGCCAGCTACAG+TGG | - | chr4_3:55760770-55760789 | None:intergenic | 45.0% | |
TATGGCTCAATTGCCACCAA+AGG | + | chr4_3:55760824-55760843 | Msa0649190:exon | 45.0% | |
TCAACAAAACCCTTCATGGG+TGG | + | chr4_3:55760953-55760972 | Msa0649190:CDS | 45.0% | |
TATGAAGGTCACTGAGTCAC+TGG | - | chr4_3:55761030-55761049 | None:intergenic | 45.0% | |
GTCCATGTTTAGTGTAGACG+AGG | + | chr4_3:55761127-55761146 | Msa0649190:CDS | 45.0% | |
TTAGTGTAGACGAGGTTTCG+AGG | + | chr4_3:55761135-55761154 | Msa0649190:CDS | 45.0% | |
TGACAAAGAGGAAGATGAGG+AGG | + | chr4_3:55761250-55761269 | Msa0649190:CDS | 45.0% | |
!! | GGGGTCAGTAATTTTTGGAC+TGG | - | chr4_3:55761399-55761418 | None:intergenic | 45.0% |
! | AGTACCTTTTGACCCTCTTG+GGG | - | chr4_3:55761418-55761437 | None:intergenic | 45.0% |
! | GTAGTACCTTTTGACCCTCT+TGG | - | chr4_3:55761420-55761439 | None:intergenic | 45.0% |
ACATGAGCTAGTAGTGGTGA+TGG | + | chr4_3:55761677-55761696 | Msa0649190:intron | 45.0% | |
CTGCACAAAGATCAAGAGTG+AGG | + | chr4_3:55761799-55761818 | Msa0649190:CDS | 45.0% | |
AAGTATCAGTGCTGTCACCA+CGG | + | chr4_3:55762027-55762046 | Msa0649190:CDS | 45.0% | |
TGATCCAAATATGCAACCCG+TGG | - | chr4_3:55762047-55762066 | None:intergenic | 45.0% | |
CATTGAAGAGGGAGATAGAG+AGG | + | chr4_3:55762811-55762830 | Msa0649190:CDS | 45.0% | |
TCACATCGTGGTTTAGGTGA+TGG | - | chr4_3:55762906-55762925 | None:intergenic | 45.0% | |
!!! | CTAGTGGAGTTTTGTTGGGA+TGG | + | chr4_3:55763518-55763537 | Msa0649190:three_prime_UTR | 45.0% |
TGTTGGGATGGATGAAAGGA+AGG | + | chr4_3:55763530-55763549 | Msa0649190:three_prime_UTR | 45.0% | |
CAGTGAAATCTTGCCTCCTA+TGG | + | chr4_3:55763562-55763581 | Msa0649190:three_prime_UTR | 45.0% | |
!!! | AATTTAAAATAAATAAGTAA+AGG | - | chr4_3:55761630-55761649 | None:intergenic | 5.0% |
!!! | ATTTATTTTAAATTTTTTTC+TGG | + | chr4_3:55761636-55761655 | Msa0649190:intron | 5.0% |
!! | GGCCAAGTTGGTGTCATGTT+TGG | - | chr4_3:55760858-55760877 | None:intergenic | 50.0% |
GAAACTCGTCCACCCATGAA+GGG | - | chr4_3:55760965-55760984 | None:intergenic | 50.0% | |
AGAAACTCGTCCACCCATGA+AGG | - | chr4_3:55760966-55760985 | None:intergenic | 50.0% | |
ACTTCTCGTCCACCAGAAGA+GGG | + | chr4_3:55760988-55761007 | Msa0649190:CDS | 50.0% | |
!! | TGATGGAGCATTGTCGTCGT+AGG | + | chr4_3:55761060-55761079 | Msa0649190:CDS | 50.0% |
!! | GATGGAGCATTGTCGTCGTA+GGG | + | chr4_3:55761061-55761080 | Msa0649190:CDS | 50.0% |
! | AATGTAGCTGATGGTGCTGG+TGG | - | chr4_3:55761179-55761198 | None:intergenic | 50.0% |
! | GACAATGTAGCTGATGGTGC+TGG | - | chr4_3:55761182-55761201 | None:intergenic | 50.0% |
AGTATCAGTGCTGTCACCAC+GGG | + | chr4_3:55762028-55762047 | Msa0649190:CDS | 50.0% | |
! | GTCACCACGGGTTGCATATT+TGG | + | chr4_3:55762040-55762059 | Msa0649190:CDS | 50.0% |
CTAGTTGCAGACACAGCACA+TGG | - | chr4_3:55762667-55762686 | None:intergenic | 50.0% | |
!! | CGTGGTTTAGGTGATGGAGA+TGG | - | chr4_3:55762900-55762919 | None:intergenic | 50.0% |
GACTTCTCGTCCACCAGAAG+AGG | + | chr4_3:55760987-55761006 | Msa0649190:CDS | 55.0% | |
CTTCTCGTCCACCAGAAGAG+GGG | + | chr4_3:55760989-55761008 | Msa0649190:CDS | 55.0% | |
! | AAGAGGGGCACACAGACGTT+CGG | + | chr4_3:55761004-55761023 | Msa0649190:CDS | 55.0% |
! | GAGCATTGTCGTCGTAGGGA+TGG | + | chr4_3:55761065-55761084 | Msa0649190:CDS | 55.0% |
CTGACCCCAAGAGGGTCAAA+AGG | + | chr4_3:55761411-55761430 | Msa0649190:CDS | 55.0% | |
AGAGGGAGATAGAGAGGCTG+AGG | + | chr4_3:55762817-55762836 | Msa0649190:CDS | 55.0% | |
TCTGTGTGCCCCTCTTCTGG+TGG | - | chr4_3:55761000-55761019 | None:intergenic | 60.0% | |
ACGTCTGTGTGCCCCTCTTC+TGG | - | chr4_3:55761003-55761022 | None:intergenic | 60.0% | |
!! | TGGTGCTGGTGGTGGCATCA+TGG | - | chr4_3:55761168-55761187 | None:intergenic | 60.0% |
!! | GTAGCTGATGGTGCTGGTGG+TGG | - | chr4_3:55761176-55761195 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 55760568 | 55763681 | 55760568 | ID=Msa0649190;Name=Msa0649190 |
chr4_3 | mRNA | 55760568 | 55763681 | 55760568 | ID=Msa0649190-mRNA-1;Parent=Msa0649190;Name=Msa0649190-mRNA-1;_AED=0.07;_eAED=0.07;_QI=257|1|1|1|1|1|4|713|331 |
chr4_3 | exon | 55760568 | 55761432 | 55760568 | ID=Msa0649190-mRNA-1:exon:14342;Parent=Msa0649190-mRNA-1 |
chr4_3 | exon | 55761779 | 55761869 | 55761779 | ID=Msa0649190-mRNA-1:exon:14343;Parent=Msa0649190-mRNA-1 |
chr4_3 | exon | 55762023 | 55762149 | 55762023 | ID=Msa0649190-mRNA-1:exon:14344;Parent=Msa0649190-mRNA-1 |
chr4_3 | exon | 55762799 | 55763681 | 55762799 | ID=Msa0649190-mRNA-1:exon:14345;Parent=Msa0649190-mRNA-1 |
chr4_3 | five_prime_UTR | 55760568 | 55760824 | 55760568 | ID=Msa0649190-mRNA-1:five_prime_utr;Parent=Msa0649190-mRNA-1 |
chr4_3 | CDS | 55760825 | 55761432 | 55760825 | ID=Msa0649190-mRNA-1:cds;Parent=Msa0649190-mRNA-1 |
chr4_3 | CDS | 55761779 | 55761869 | 55761779 | ID=Msa0649190-mRNA-1:cds;Parent=Msa0649190-mRNA-1 |
chr4_3 | CDS | 55762023 | 55762149 | 55762023 | ID=Msa0649190-mRNA-1:cds;Parent=Msa0649190-mRNA-1 |
chr4_3 | CDS | 55762799 | 55762968 | 55762799 | ID=Msa0649190-mRNA-1:cds;Parent=Msa0649190-mRNA-1 |
chr4_3 | three_prime_UTR | 55762969 | 55763681 | 55762969 | ID=Msa0649190-mRNA-1:three_prime_utr;Parent=Msa0649190-mRNA-1 |
Gene Sequence |
Protein sequence |