AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598560 MtrunA17_Chr4g0022251 97.319 634 17 0 1 634 1 634 0.0 1300
Msa0598560 MtrunA17_Chr1g0173511 87.090 488 51 3 142 617 5 492 0.0 879
Msa0598560 MtrunA17_Chr3g0116051 35.823 589 313 18 68 634 58 603 9.02e-112 348
Msa0598560 MtrunA17_Chr4g0057551 36.014 572 308 16 83 634 74 607 2.17e-109 342
Msa0598560 MtrunA17_Chr8g0364481 36.266 557 299 15 97 634 73 592 5.75e-109 341
Msa0598560 MtrunA17_Chr5g0419621 33.997 653 357 21 1 634 2 599 4.44e-108 339
Msa0598560 MtrunA17_Chr4g0043001 34.791 526 247 21 173 632 85 580 1.78e-71 243
Msa0598560 MtrunA17_Chr4g0043021 31.177 603 295 22 87 632 41 580 5.24e-69 236
Msa0598560 MtrunA17_Chr3g0116091 30.396 454 240 13 199 634 4 399 2.16e-65 221
Msa0598560 MtrunA17_Chr1g0173501 76.667 150 26 3 1 142 1 149 2.04e-58 194
Msa0598560 MtrunA17_Chr3g0116071 31.975 319 141 9 195 506 4 253 2.81e-44 158
Msa0598560 MtrunA17_Chr7g0266131 28.851 409 223 13 206 606 45 393 5.61e-41 155
Msa0598560 MtrunA17_Chr1g0178831 29.096 354 193 9 283 622 102 411 1.43e-36 142
Msa0598560 MtrunA17_Chr5g0443881 28.609 381 208 13 231 604 62 385 2.91e-35 138
Msa0598560 MtrunA17_Chr3g0098721 28.614 332 190 9 231 555 56 347 1.20e-34 136
Msa0598560 MtrunA17_Chr4g0064541 29.771 393 209 17 209 581 45 390 8.93e-33 132
Msa0598560 MtrunA17_Chr7g0266151 27.586 377 198 13 216 581 47 359 2.84e-32 129
Msa0598560 MtrunA17_Chr1g0211041 28.272 382 214 14 216 581 56 393 4.34e-31 127
Msa0598560 MtrunA17_Chr4g0019091 27.208 419 219 15 216 604 55 417 2.81e-30 124
Msa0598560 MtrunA17_Chr7g0236041 27.273 363 200 10 223 546 76 413 1.53e-27 117
Msa0598560 MtrunA17_Chr3g0121411 25.823 395 222 11 223 575 77 442 6.00e-27 115
Msa0598560 MtrunA17_Chr3g0121431 25.316 395 224 11 223 575 132 497 1.84e-26 114
Msa0598560 MtrunA17_Chr6g0453731 27.211 294 159 6 283 546 146 414 4.07e-26 113
Msa0598560 MtrunA17_Chr4g0019071 28.462 260 149 9 362 604 55 294 4.04e-22 98.2
Msa0598560 MtrunA17_Chr3g0116081 31.356 118 73 3 518 634 5 115 3.06e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598560 AT5G50400.1 35.437 618 340 15 37 634 13 591 8.19e-119 367
Msa0598560 AT5G50400.2 36.976 549 296 12 105 634 2 519 1.84e-113 350
Msa0598560 AT4G24890.1 35.478 575 314 17 79 634 59 595 6.29e-113 352
Msa0598560 AT1G13750.1 37.522 565 283 17 96 634 73 593 1.14e-111 348
Msa0598560 AT2G03450.1 31.738 627 300 21 68 632 17 577 3.24e-73 248
Msa0598560 AT1G13900.1 31.023 606 318 22 73 632 26 577 1.05e-67 233
Msa0598560 AT3G20500.1 29.058 382 205 13 231 604 60 383 3.37e-35 138
Msa0598560 AT3G52820.1 27.273 385 217 9 241 606 46 386 6.94e-33 132
Msa0598560 AT4G36350.1 28.329 413 234 13 220 609 55 428 1.35e-32 131
Msa0598560 AT1G56360.1 28.851 409 222 16 220 604 54 417 3.64e-32 130
Msa0598560 AT5G34850.1 27.551 392 217 16 210 581 45 389 9.75e-30 123
Msa0598560 AT4G13700.1 27.168 346 217 9 226 546 73 408 2.74e-29 122
Msa0598560 AT3G52780.1 29.044 272 161 6 283 549 100 344 1.56e-28 119
Msa0598560 AT3G52810.1 28.000 275 166 6 279 550 103 348 2.61e-28 118
Msa0598560 AT2G27190.1 26.241 423 235 15 187 581 23 396 2.14e-27 116
Msa0598560 AT3G52780.2 28.409 264 157 6 283 541 100 336 1.91e-26 111
Msa0598560 AT4G13700.2 26.488 336 212 9 226 536 73 398 1.91e-25 109
Msa0598560 AT3G07130.1 27.385 325 175 9 283 575 140 435 9.22e-25 108
Msa0598560 AT2G18130.1 30.279 251 140 8 370 604 167 398 1.02e-24 107
Msa0598560 AT2G16430.2 27.619 315 176 12 283 581 117 395 5.01e-23 103
Msa0598560 AT3G07130.2 26.027 292 162 7 283 545 140 406 1.82e-21 99.0
Msa0598560 AT2G16430.1 27.857 280 156 10 316 581 28 275 4.25e-21 95.5
Msa0598560 AT2G32770.2 24.768 323 171 9 283 560 68 363 4.20e-20 94.0
Msa0598560 AT2G32770.3 24.768 323 171 9 283 560 149 444 7.15e-20 94.0
Msa0598560 AT3G46120.1 25.830 271 143 7 347 604 116 341 1.47e-17 85.5
Msa0598560 AT2G32770.1 22.327 318 156 8 283 560 149 415 9.75e-14 74.7

Find 158 sgRNAs with CRISPR-Local

Find 476 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATTTCCTTTGGTGATA+TGG 0.160418 4_2:+35394389 Msa0598560:CDS
CTGATAATGCAGTAAAATTT+TGG 0.174680 4_2:-35389137 None:intergenic
CCTAGTCCTGCCAAGGATTT+TGG 0.184357 4_2:+35393984 Msa0598560:CDS
AATCCTAAGAAGCCACTTTA+TGG 0.194096 4_2:+35393178 Msa0598560:CDS
CATTCATGGAATCCTCAAAT+TGG 0.201189 4_2:+35389001 Msa0598560:exon
CCCGATTATGACAAGAAATA+AGG 0.214350 4_2:-35397002 None:intergenic
AGCTGGTGGAGTTGAAAATT+TGG 0.227346 4_2:-35394346 None:intergenic
CCCTTATTTCTTGTCATAAT+CGG 0.231580 4_2:+35397001 Msa0598560:three_prime_UTR
TGTCCATAAAGTGGCTTCTT+AGG 0.235315 4_2:-35393181 None:intergenic
TTCAGAGATTATGTCGATTC+TGG 0.253362 4_2:+35395009 Msa0598560:intron
TAGAAATGATTTAAACTTAG+AGG 0.262549 4_2:+35396576 Msa0598560:CDS
GCCATTGCTGTTACAGAATA+AGG 0.264422 4_2:+35395697 Msa0598560:CDS
AGAAAATGTGGCCTTGGTTT+TGG 0.278781 4_2:-35388902 None:intergenic
AGATTATAGAATTTGAATTA+AGG 0.305309 4_2:-35388961 None:intergenic
CTGAGAGCTGGAGCCTAAAA+AGG 0.307021 4_2:+35396518 Msa0598560:CDS
TTCATTTCCTTTGGTGATAT+GGG 0.313819 4_2:+35394390 Msa0598560:CDS
TTTCCATTCATATTCATTCA+TGG 0.318705 4_2:+35388987 Msa0598560:exon
CAGCTCAAATTCTAAATTGT+TGG 0.325166 4_2:+35389230 Msa0598560:CDS
TAGTAATGATGATAACTCTT+AGG 0.327889 4_2:-35388839 None:intergenic
GCAGTATAACTGGATGAAAA+AGG 0.337674 4_2:+35395290 Msa0598560:intron
TAGACATTGAAGGGCTAATA+AGG 0.346423 4_2:-35389059 None:intergenic
GAGCTCAAATTCATTTCCTT+TGG 0.349534 4_2:+35394381 Msa0598560:CDS
CGAAACCGAGAGATGGAGAT+TGG 0.349856 4_2:+35389289 Msa0598560:CDS
ACACATATAGATATATTAAA+AGG 0.355435 4_2:+35396853 Msa0598560:three_prime_UTR
GACCGAGATAGGCTTTAAAT+AGG 0.356408 4_2:-35397110 None:intergenic
AACTTTCCCTTCCTCAACTT+TGG 0.356583 4_2:+35389083 Msa0598560:CDS
TTTCTCAGCCCCTGCCTTGT+TGG 0.369987 4_2:+35393130 Msa0598560:CDS
TAAACGAGTTGGACCGAGAT+AGG 0.370957 4_2:-35397121 None:intergenic
GGCTTATCCTTTGCTGCAGT+TGG 0.372410 4_2:-35395099 None:intergenic
AAAGGAAGAAAATGTGGCCT+TGG 0.387156 4_2:-35388908 None:intergenic
TTGAAGCTACTGGACTAATA+AGG 0.387415 4_2:-35394845 None:intergenic
TATTCTTACTTGGAATTTGA+AGG 0.390234 4_2:-35389327 None:intergenic
AGAAACAAATGCAGAATTGT+AGG 0.391975 4_2:+35396798 Msa0598560:three_prime_UTR
GAGTTCTATTATTTACAAAC+TGG 0.393218 4_2:+35389464 Msa0598560:CDS
TCCTTTGCTGCAGTTGGCAT+TGG 0.393804 4_2:-35395093 None:intergenic
CCTTATTTCTTGTCATAATC+GGG 0.394063 4_2:+35397002 Msa0598560:three_prime_UTR
ATTGTTTGAGAATTTGTCTA+AGG 0.400148 4_2:-35395969 None:intergenic
CCGATTATGACAAGAAATAA+GGG 0.404971 4_2:-35397001 None:intergenic
ATCAGATACAAGAGAAGTTA+AGG 0.412947 4_2:+35396730 Msa0598560:CDS
CATGCTGTCATTGGCATGGC+TGG 0.413111 4_2:+35395941 Msa0598560:CDS
TTCCTCAACTTTGGACCTTA+CGG 0.414650 4_2:+35389092 Msa0598560:CDS
AGTGCTTACTCCTACAGATA+TGG 0.417269 4_2:+35394062 Msa0598560:CDS
ATTCATGGAATCCTCAAATT+GGG 0.419365 4_2:+35389002 Msa0598560:exon
CTGTAGGAGTAAGCACTTGA+TGG 0.420678 4_2:-35394056 None:intergenic
TCAGCCCCTGCCTTGTTGGA+AGG 0.422865 4_2:+35393134 Msa0598560:CDS
CATTCCTATAAAAGATCAAA+AGG 0.427448 4_2:+35395877 Msa0598560:CDS
TTTAGATGATAATCCGTTGT+TGG 0.430584 4_2:-35395648 None:intergenic
TGCATTGGCAGGCTGAGAGC+TGG 0.432137 4_2:+35396506 Msa0598560:intron
AAACACTGAGTTTACATTGT+TGG 0.436214 4_2:-35394763 None:intergenic
CTGATATTCAGTTTAAGATA+AGG 0.443765 4_2:-35389210 None:intergenic
GGAGACATAAGTTATGCAAC+TGG 0.453721 4_2:+35394792 Msa0598560:CDS
TATGAAACTCTTGAAGCTAC+TGG 0.454406 4_2:-35394855 None:intergenic
GTTTCATACATGACAGCAAT+CGG 0.454768 4_2:+35394870 Msa0598560:CDS
ATCATCATTACTATAAGAAA+AGG 0.457395 4_2:+35388849 Msa0598560:five_prime_UTR
GGTCTAGTAACTCGGCTGAT+TGG 0.457957 4_2:+35394313 Msa0598560:intron
CAGCAAATCCAATATGCAAA+TGG 0.463555 4_2:+35393789 Msa0598560:CDS
GACTATTCCCACTGTAGGTA+GGG 0.464037 4_2:-35397057 None:intergenic
TTTGTCACGGTTACCGTCAC+CGG 0.464369 4_2:+35389261 Msa0598560:CDS
ATAGAGTTTGTGTTCTTCAC+TGG 0.469598 4_2:+35393103 Msa0598560:CDS
ATGTTTGAGAACCCAATTTG+AGG 0.472251 4_2:-35389013 None:intergenic
ATTCCATGAATGAATATGAA+TGG 0.472503 4_2:-35388990 None:intergenic
GCTAGACCATAGGTCCTTGT+TGG 0.477756 4_2:-35397088 None:intergenic
TTGATAACCGATAGTGCTCC+AGG 0.477995 4_2:-35394717 None:intergenic
AGCTCATCTGATCCTCCAGC+TGG 0.484295 4_2:-35394363 None:intergenic
CCAAAATCCTTGGCAGGACT+AGG 0.485338 4_2:-35393984 None:intergenic
TAGGTCCTTGTTGGACGGCC+AGG 0.485906 4_2:-35397079 None:intergenic
GGCCGTCCAACAAGGACCTA+TGG 0.489785 4_2:+35397082 Msa0598560:three_prime_UTR
TTCAGAAGAACACTACATTC+AGG 0.496934 4_2:+35394431 Msa0598560:CDS
CCACATTCACCACCAGAGTC+AGG 0.499819 4_2:-35395048 None:intergenic
AACCGTAAGGTCCAAAGTTG+AGG 0.499979 4_2:-35389094 None:intergenic
GCTCCTGTACATGCTGTCAT+TGG 0.501222 4_2:+35395932 Msa0598560:CDS
GTTTATGTTACTCCTGACTC+TGG 0.501264 4_2:+35395036 Msa0598560:CDS
AATGCAAGAAAGAACAGAAT+GGG 0.502167 4_2:+35393017 Msa0598560:CDS
ATGAGATTGACATGGGTTAG+TGG 0.502611 4_2:+35393753 Msa0598560:CDS
AGTGGACCTTCCAACAAGGC+AGG 0.508899 4_2:-35393140 None:intergenic
ATTTAGTGTGTTTAACCGTA+AGG 0.512631 4_2:-35389107 None:intergenic
TGAGATTGACATGGGTTAGT+GGG 0.513254 4_2:+35393754 Msa0598560:CDS
GAGTTTGTGTTCTTCACTGG+TGG 0.514565 4_2:+35393106 Msa0598560:CDS
TGCCATCCAAAATCCTTGGC+AGG 0.514716 4_2:-35393990 None:intergenic
GGGAAAGTTGTAGACATTGA+AGG 0.519414 4_2:-35389069 None:intergenic
CCTGACTCTGGTGGTGAATG+TGG 0.520849 4_2:+35395048 Msa0598560:CDS
TGAACAGCCTGGAGCACTAT+CGG 0.522454 4_2:+35394710 Msa0598560:intron
AGTGCTGAATGGATGAATCC+TGG 0.523299 4_2:-35394017 None:intergenic
TCCAATGCCAACTGCAGCAA+AGG 0.523966 4_2:+35395092 Msa0598560:CDS
TTAATAGACAACATACTCCT+TGG 0.526063 4_2:+35395325 Msa0598560:CDS
ACCGAGAGATGGAGATTGGT+TGG 0.528220 4_2:+35389293 Msa0598560:CDS
CTTGAGATATGTCCATAAAG+TGG 0.530030 4_2:-35393190 None:intergenic
GACATACCTTGACAGGGTAA+TGG 0.531072 4_2:-35389514 None:intergenic
GCCTTATTCTGTAACAGCAA+TGG 0.531563 4_2:-35395698 None:intergenic
ATCCATTCAGCACTTATGAC+AGG 0.531954 4_2:+35394026 Msa0598560:CDS
TAATATCAACCGAACATGAC+TGG 0.532916 4_2:+35395160 Msa0598560:CDS
ATGCCAATGACAGCATGTAC+AGG 0.534351 4_2:-35395935 None:intergenic
ATCATGCCATCCAAAATCCT+TGG 0.535399 4_2:-35393994 None:intergenic
TTCATACCTTCCATATCTGT+AGG 0.537773 4_2:-35394072 None:intergenic
TCATCTGATCCTCCAGCTGG+TGG 0.542127 4_2:-35394360 None:intergenic
AGTTGTGCCTAGTCCTGCCA+AGG 0.542146 4_2:+35393977 Msa0598560:CDS
CTGGTCCGAAAATTCTGAGC+AGG 0.542863 4_2:+35395179 Msa0598560:CDS
AAATTCTAAATTGTTGGATG+AGG 0.543261 4_2:+35389236 Msa0598560:CDS
ATTGGAAAGTATGTTTCATA+CGG 0.543798 4_2:-35395075 None:intergenic
GCCAACCAATCTCCATCTCT+CGG 0.544480 4_2:-35389294 None:intergenic
GAATGCAAGAAAGAACAGAA+TGG 0.545134 4_2:+35393016 Msa0598560:CDS
GCTTTGCCATTACCCTGTCA+AGG 0.547055 4_2:+35389508 Msa0598560:CDS
TGTGCATGACATACCTTGAC+AGG 0.552123 4_2:-35389521 None:intergenic
TTTGCATATTGGATTTGCTG+AGG 0.552556 4_2:-35393786 None:intergenic
ACCTACAGTGGGAATAGTCC+TGG 0.553103 4_2:+35397061 Msa0598560:three_prime_UTR
GGCGTTTCGAAACCGAGAGA+TGG 0.556098 4_2:+35389282 Msa0598560:CDS
TTTCATACATGACAGCAATC+GGG 0.557285 4_2:+35394871 Msa0598560:CDS
CCAATGATGGTCTAGTAACT+CGG 0.560138 4_2:+35394305 Msa0598560:intron
CGGTTTCGAAACGCCGGTGA+CGG 0.566494 4_2:-35389274 None:intergenic
GACCATAGGTCCTTGTTGGA+CGG 0.566936 4_2:-35397084 None:intergenic
TGGACCTTCCAACAAGGCAG+GGG 0.567412 4_2:-35393138 None:intergenic
TTAGGATTAGCAAAACTCAA+AGG 0.568493 4_2:-35393163 None:intergenic
GGACTATTCCCACTGTAGGT+AGG 0.570994 4_2:-35397058 None:intergenic
CCTTGGTACTCTATTGAACA+AGG 0.571416 4_2:+35395120 Msa0598560:CDS
GGAAAGTTGTAGACATTGAA+GGG 0.572421 4_2:-35389068 None:intergenic
AGCCTATTTAAAGCCTATCT+CGG 0.573373 4_2:+35397108 Msa0598560:three_prime_UTR
CCGTTGTTGGAAGTGTACAT+TGG 0.575888 4_2:-35395635 None:intergenic
TGTACATGCTGTCATTGGCA+TGG 0.577657 4_2:+35395937 Msa0598560:CDS
GTCCTGTCATAAGTGCTGAA+TGG 0.579771 4_2:-35394028 None:intergenic
ATTCCTATAAAAGATCAAAA+GGG 0.581083 4_2:+35395878 Msa0598560:CDS
GTTCTTCTGAAGCATCAAGA+GGG 0.581323 4_2:-35394419 None:intergenic
GTGGACCTTCCAACAAGGCA+GGG 0.584213 4_2:-35393139 None:intergenic
ATCTCTCGGTTTCGAAACGC+CGG 0.585583 4_2:-35389280 None:intergenic
CTGCAGCAAAGGATAAGCCT+TGG 0.586086 4_2:+35395103 Msa0598560:CDS
GTAAGGTCCAAAGTTGAGGA+AGG 0.587368 4_2:-35389090 None:intergenic
TCAGAAATTTATTAACGCTG+TGG 0.590172 4_2:+35395673 Msa0598560:CDS
GAACATGAAACAGGTTGACT+TGG 0.593153 4_2:+35395790 Msa0598560:intron
ATAGATATATTAAAAGGCAA+AGG 0.597912 4_2:+35396859 Msa0598560:three_prime_UTR
ATTAGCAAAACTCAAAGGAG+TGG 0.611195 4_2:-35393158 None:intergenic
TATTATACCCCTACCTACAG+TGG 0.614173 4_2:+35397049 Msa0598560:three_prime_UTR
ATTATACCCCTACCTACAGT+GGG 0.614795 4_2:+35397050 Msa0598560:three_prime_UTR
GTTGGATGAGGAGTTTGTCA+CGG 0.615270 4_2:+35389248 Msa0598560:CDS
TTCTTCTGAAGCATCAAGAG+GGG 0.617475 4_2:-35394418 None:intergenic
GACATGGGTTAGTGGGGACA+AGG 0.620413 4_2:+35393761 Msa0598560:CDS
GGTTTGAAAGGAAGAAAATG+TGG 0.620903 4_2:-35388914 None:intergenic
GAGATTGACATGGGTTAGTG+GGG 0.620979 4_2:+35393755 Msa0598560:CDS
GTAAACTCAGTGTTTCACAT+TGG 0.623186 4_2:+35394771 Msa0598560:CDS
TATGTTACTCCTGACTCTGG+TGG 0.623778 4_2:+35395039 Msa0598560:CDS
CCTTGTTCAATAGAGTACCA+AGG 0.623949 4_2:-35395120 None:intergenic
TTTGAATTAAGGCCAAACAA+AGG 0.624435 4_2:-35388950 None:intergenic
ACTATTCCCACTGTAGGTAG+GGG 0.629903 4_2:-35397056 None:intergenic
TGTTGCAGATGAGATTGACA+TGG 0.630845 4_2:+35393745 Msa0598560:intron
TAAGGTCCAAAGTTGAGGAA+GGG 0.632550 4_2:-35389089 None:intergenic
CTTTAAATAGGCTAGACCAT+AGG 0.637156 4_2:-35397098 None:intergenic
TTCTCTCATAGTTATGCACA+TGG 0.637196 4_2:-35395823 None:intergenic
CCAATGTACACTTCCAACAA+CGG 0.640358 4_2:+35395635 Msa0598560:CDS
TGTTCTTCTGAAGCATCAAG+AGG 0.645423 4_2:-35394420 None:intergenic
ATAGTCCTGGCCGTCCAACA+AGG 0.645533 4_2:+35397074 Msa0598560:three_prime_UTR
CAGCAATCGGGAATCATGAG+AGG 0.646921 4_2:+35394883 Msa0598560:CDS
AAGGAGTGGACCTTCCAACA+AGG 0.647985 4_2:-35393144 None:intergenic
TACCCCATGAAAATCAGCCA+AGG 0.655808 4_2:-35395342 None:intergenic
ACAGGGTAATGGCAAAGCAG+AGG 0.665481 4_2:-35389503 None:intergenic
GCCAGGACTATTCCCACTGT+AGG 0.667457 4_2:-35397062 None:intergenic
CTTACTCCTACAGATATGGA+AGG 0.668628 4_2:+35394066 Msa0598560:CDS
TGCAGTGTGACAACTTGTAG+TGG 0.671946 4_2:+35393043 Msa0598560:CDS
ACAGACCAAAACCAAAACCA+AGG 0.673161 4_2:+35388891 Msa0598560:five_prime_UTR
GTTGCAGATGAGATTGACAT+GGG 0.725180 4_2:+35393746 Msa0598560:intron
GTGCATGACATACCTTGACA+GGG 0.763616 4_2:-35389520 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTAATTAATATTTTGG+GGG - chr4_2:35390117-35390136 None:intergenic 10.0%
!!! CAAATTTAATTAATATTTTG+GGG - chr4_2:35390118-35390137 None:intergenic 10.0%
!!! GCAAATTTAATTAATATTTT+GGG - chr4_2:35390119-35390138 None:intergenic 10.0%
!!! AGCAAATTTAATTAATATTT+TGG - chr4_2:35390120-35390139 None:intergenic 10.0%
!!! TTTTTTTTCTTTTATTTTGT+TGG + chr4_2:35390182-35390201 Msa0598560:intron 10.0%
!! ATAATATTTATGTATATTGA+AGG - chr4_2:35390252-35390271 None:intergenic 10.0%
!! TTAGTAAAAAAAATTAAACT+CGG + chr4_2:35390321-35390340 Msa0598560:intron 10.0%
!! TATCATTTCATTAATAATAA+TGG + chr4_2:35392367-35392386 Msa0598560:intron 10.0%
!! TCTAATAATTATAAAATGAT+TGG + chr4_2:35393722-35393741 Msa0598560:intron 10.0%
!! AGATTATAGAATTTGAATTA+AGG - chr4_2:35388964-35388983 None:intergenic 15.0%
!! ATTAATTAACATTATAGCAA+TGG - chr4_2:35389387-35389406 None:intergenic 15.0%
!!! GTTCTTTATTTCTAAATAAA+CGG + chr4_2:35389615-35389634 Msa0598560:intron 15.0%
!!! TTCTTTATTTCTAAATAAAC+GGG + chr4_2:35389616-35389635 Msa0598560:intron 15.0%
!! TATAATTCCAAGAAAATAAA+TGG + chr4_2:35389829-35389848 Msa0598560:intron 15.0%
!!! AATTTAATTAATATTTTGGG+GGG - chr4_2:35390116-35390135 None:intergenic 15.0%
!! TACTAAATATAAGAATGTTA+AGG - chr4_2:35390307-35390326 None:intergenic 15.0%
!! TAGTAAAAAAAATTAAACTC+GGG + chr4_2:35390322-35390341 Msa0598560:intron 15.0%
!! ATTTCAGCATTTAATTAAAT+AGG - chr4_2:35390416-35390435 None:intergenic 15.0%
!! ATAAAAAATTAAGGCTTAAA+TGG - chr4_2:35391213-35391232 None:intergenic 15.0%
!! TTTATAAATTTAAATTCCAC+AGG - chr4_2:35391586-35391605 None:intergenic 15.0%
!!! AAACTTTTTAAATTATCTCA+TGG - chr4_2:35391684-35391703 None:intergenic 15.0%
!!! ACTTATTTTTGAATAGAAAA+TGG + chr4_2:35391809-35391828 Msa0598560:intron 15.0%
!!! CTTATTTTTGAATAGAAAAT+GGG + chr4_2:35391810-35391829 Msa0598560:intron 15.0%
!! TGTTATTAAATTCATAATCA+GGG - chr4_2:35392092-35392111 None:intergenic 15.0%
!! ATGTTATTAAATTCATAATC+AGG - chr4_2:35392093-35392112 None:intergenic 15.0%
!! ACTAATCACATTATTTATTA+TGG - chr4_2:35392413-35392432 None:intergenic 15.0%
!!! AATAAATAATGTGATTAGTT+AGG + chr4_2:35392414-35392433 Msa0598560:intron 15.0%
!!! ATAAATAATGTGATTAGTTA+GGG + chr4_2:35392415-35392434 Msa0598560:intron 15.0%
!! GAAAAATAAAATTATATCAG+TGG + chr4_2:35392555-35392574 Msa0598560:intron 15.0%
!!! GACTAACTAATATTTTTATA+GGG - chr4_2:35393446-35393465 None:intergenic 15.0%
!!! AGACTAACTAATATTTTTAT+AGG - chr4_2:35393447-35393466 None:intergenic 15.0%
!! ATTTCAAATTAAATAAGCTT+TGG + chr4_2:35394463-35394482 Msa0598560:intron 15.0%
!! ATTTAAGCAAATGAAAATAA+TGG + chr4_2:35394569-35394588 Msa0598560:intron 15.0%
!!! TAACAATATTTTAAAGACAA+AGG - chr4_2:35395566-35395585 None:intergenic 15.0%
!!! TGATTTTTTCAAATTATTAG+CGG - chr4_2:35396149-35396168 None:intergenic 15.0%
!! AAAAAAATCATAAGCATAAA+TGG - chr4_2:35396455-35396474 None:intergenic 15.0%
!! ATATGATAAATTACAAAACA+AGG - chr4_2:35396646-35396665 None:intergenic 15.0%
!! ACACATATAGATATATTAAA+AGG + chr4_2:35396853-35396872 Msa0598560:three_prime_UTR 15.0%
!!! AACAAGATTTTATTGATTAT+AGG - chr4_2:35396969-35396988 None:intergenic 15.0%
!! ATCATCATTACTATAAGAAA+AGG + chr4_2:35388849-35388868 Msa0598560:five_prime_UTR 20.0%
!!! TCTTTATTTCTAAATAAACG+GGG + chr4_2:35389617-35389636 Msa0598560:intron 20.0%
!! TTGTTTGGCAAATTATTAAT+TGG + chr4_2:35389726-35389745 Msa0598560:intron 20.0%
!! AAATATCAATAAACATCCAA+AGG - chr4_2:35389803-35389822 None:intergenic 20.0%
!!! TAACTTTCCATTTATTTTCT+TGG - chr4_2:35389839-35389858 None:intergenic 20.0%
!! GCATAATATATATAAAGTCT+GGG - chr4_2:35390015-35390034 None:intergenic 20.0%
!! TGCATAATATATATAAAGTC+TGG - chr4_2:35390016-35390035 None:intergenic 20.0%
!! AGTAAAAAAAATTAAACTCG+GGG + chr4_2:35390323-35390342 Msa0598560:intron 20.0%
!! CTACTAAATTAGCATTTAAT+TGG + chr4_2:35390474-35390493 Msa0598560:intron 20.0%
!! ATGTTAAATATAACTGACAA+TGG - chr4_2:35390709-35390728 None:intergenic 20.0%
!! TATATTATCAGTTATTCAGT+TGG + chr4_2:35390921-35390940 Msa0598560:intron 20.0%
!! AAACAAAAGATAGTTACATA+TGG + chr4_2:35391077-35391096 Msa0598560:intron 20.0%
!!! TGTGATTTTAGAAATAGTTA+TGG - chr4_2:35391714-35391733 None:intergenic 20.0%
!!! TCTAAAATCACATTTACAAT+TGG + chr4_2:35391722-35391741 Msa0598560:intron 20.0%
!!! GTTTATTTTTTATGTAGTGT+CGG - chr4_2:35391791-35391810 None:intergenic 20.0%
!! AGATATAGTAGATTTACATA+TGG - chr4_2:35392759-35392778 None:intergenic 20.0%
!! CTGATTAATAACTAAAATGT+AGG + chr4_2:35392946-35392965 Msa0598560:intron 20.0%
!! TCAAAATCCATTATATATTG+CGG - chr4_2:35393303-35393322 None:intergenic 20.0%
!! AAATTAAACTCTTTCATGTT+CGG - chr4_2:35393491-35393510 None:intergenic 20.0%
!! AACAAATACTTATATGAACA+TGG - chr4_2:35393881-35393900 None:intergenic 20.0%
!!! TTTTTCCATCTTAAATTGAT+AGG + chr4_2:35393951-35393970 Msa0598560:intron 20.0%
!!! TTTGCTTAAATTTTTGTGTT+CGG - chr4_2:35394560-35394579 None:intergenic 20.0%
!!! TAGTTCAGTTTTTAAAACAT+TGG - chr4_2:35395394-35395413 None:intergenic 20.0%
!! ATTCCTATAAAAGATCAAAA+GGG + chr4_2:35395878-35395897 Msa0598560:CDS 20.0%
!!! ATAATGATTGTTCTAAATTG+TGG + chr4_2:35396025-35396044 Msa0598560:intron 20.0%
!! TCAAACCTTTATATATATTG+CGG + chr4_2:35396331-35396350 Msa0598560:intron 20.0%
!! TAGAAATGATTTAAACTTAG+AGG + chr4_2:35396576-35396595 Msa0598560:CDS 20.0%
!! ATAGATATATTAAAAGGCAA+AGG + chr4_2:35396859-35396878 Msa0598560:three_prime_UTR 20.0%
! TAGTAATGATGATAACTCTT+AGG - chr4_2:35388842-35388861 None:intergenic 25.0%
! TTTCCATTCATATTCATTCA+TGG + chr4_2:35388987-35389006 Msa0598560:exon 25.0%
! ATTCCATGAATGAATATGAA+TGG - chr4_2:35388993-35389012 None:intergenic 25.0%
!!! CTGATAATGCAGTAAAATTT+TGG - chr4_2:35389140-35389159 None:intergenic 25.0%
!! TTACTGCATTATCAGATTTT+AGG + chr4_2:35389145-35389164 Msa0598560:CDS 25.0%
!! CTGATATTCAGTTTAAGATA+AGG - chr4_2:35389213-35389232 None:intergenic 25.0%
! AAATTCTAAATTGTTGGATG+AGG + chr4_2:35389236-35389255 Msa0598560:CDS 25.0%
! TATTCTTACTTGGAATTTGA+AGG - chr4_2:35389330-35389349 None:intergenic 25.0%
! TCCAAGTAAGAATATTACAT+TGG + chr4_2:35389336-35389355 Msa0598560:intron 25.0%
! ACCAATGTAATATTCTTACT+TGG - chr4_2:35389340-35389359 None:intergenic 25.0%
! GAGTTCTATTATTTACAAAC+TGG + chr4_2:35389464-35389483 Msa0598560:CDS 25.0%
!!! CTTTATTTCTAAATAAACGG+GGG + chr4_2:35389618-35389637 Msa0598560:intron 25.0%
!!! TATATTACTACTAGCTTGTT+TGG + chr4_2:35389711-35389730 Msa0598560:intron 25.0%
!! TCCATCATTTTATATTGTCA+AGG + chr4_2:35389861-35389880 Msa0598560:intron 25.0%
!! CCATCATTTTATATTGTCAA+GGG + chr4_2:35389862-35389881 Msa0598560:intron 25.0%
! TATGAAAACAATAGTTGTGT+TGG + chr4_2:35390269-35390288 Msa0598560:intron 25.0%
! TAGTAGCATGAATGAATTAT+GGG - chr4_2:35390460-35390479 None:intergenic 25.0%
! TTAGTAGCATGAATGAATTA+TGG - chr4_2:35390461-35390480 None:intergenic 25.0%
! AAATATAACTGACAATGGAT+TGG - chr4_2:35390704-35390723 None:intergenic 25.0%
! AAGTTATGTAGCTAATGATA+CGG - chr4_2:35390764-35390783 None:intergenic 25.0%
! GATAGAGTTTAAACTTCAAA+AGG - chr4_2:35390796-35390815 None:intergenic 25.0%
!!! TCTTTTGTTTATGCAATAAG+AGG - chr4_2:35391067-35391086 None:intergenic 25.0%
!!! TCAAGAGAGCATATTTTTTT+TGG - chr4_2:35391444-35391463 None:intergenic 25.0%
!!! ACATTGTTTTGATCTCAATT+TGG - chr4_2:35391504-35391523 None:intergenic 25.0%
! GAATATCATGATAGAGAATT+GGG - chr4_2:35391873-35391892 None:intergenic 25.0%
! AGAATATCATGATAGAGAAT+TGG - chr4_2:35391874-35391893 None:intergenic 25.0%
! TTTGTCTTGATTATACTACT+TGG - chr4_2:35392034-35392053 None:intergenic 25.0%
! TATAATCAAGACAAACCAAA+GGG + chr4_2:35392039-35392058 Msa0598560:intron 25.0%
! TAAGCTTCGTATTCAATTTA+AGG - chr4_2:35392137-35392156 None:intergenic 25.0%
! AAATTGAATACGAAGCTTAA+AGG + chr4_2:35392138-35392157 Msa0598560:intron 25.0%
!!! ATAATGGATTCAATACAACT+TGG + chr4_2:35392383-35392402 Msa0598560:intron 25.0%
!!! TAATGGATTCAATACAACTT+GGG + chr4_2:35392384-35392403 Msa0598560:intron 25.0%
! ATGCAATTGCTCTATTTATA+AGG - chr4_2:35392638-35392657 None:intergenic 25.0%
! TATTGAAGTTTGAAGGATTT+GGG - chr4_2:35392713-35392732 None:intergenic 25.0%
! ATAGTAGATTTACATATGGT+TGG - chr4_2:35392755-35392774 None:intergenic 25.0%
! ATCATTTATTACGATATGCA+GGG + chr4_2:35393244-35393263 Msa0598560:intron 25.0%
!!! ATATGCAGGGTTTTAAATAA+AGG + chr4_2:35393257-35393276 Msa0598560:intron 25.0%
! TACTGAAAACTTTGATATTG+CGG + chr4_2:35394121-35394140 Msa0598560:intron 25.0%
!!! ATTTGATTTTGTTCCAATGA+TGG + chr4_2:35394292-35394311 Msa0598560:intron 25.0%
!! ATTGGAAAGTATGTTTCATA+CGG - chr4_2:35395078-35395097 None:intergenic 25.0%
!! TTTTTGTATTGCAGTATAAC+TGG + chr4_2:35395280-35395299 Msa0598560:intron 25.0%
!! TTACTACAATTCCGTTATTT+TGG - chr4_2:35395498-35395517 None:intergenic 25.0%
!! AAATAACGGAATTGTAGTAA+AGG + chr4_2:35395498-35395517 Msa0598560:intron 25.0%
! GTTTCAAATTAATCTTGAAC+TGG - chr4_2:35395524-35395543 None:intergenic 25.0%
!! ATAAGTTAGCTTCTTATACA+AGG - chr4_2:35395761-35395780 None:intergenic 25.0%
!! CTTTTGATCTTTTATAGGAA+TGG - chr4_2:35395879-35395898 None:intergenic 25.0%
! CATTCCTATAAAAGATCAAA+AGG + chr4_2:35395877-35395896 Msa0598560:CDS 25.0%
! ATTGTTTGAGAATTTGTCTA+AGG - chr4_2:35395972-35395991 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr4_2:35396174-35396193 Msa0598560:intron 25.0%
! AATCATAATTACGTCTTTGT+CGG - chr4_2:35396289-35396308 None:intergenic 25.0%
! AAGACGTAATTATGATTACT+AGG + chr4_2:35396292-35396311 Msa0598560:intron 25.0%
! ATAGACATATGTCTAAATTG+CGG - chr4_2:35396376-35396395 None:intergenic 25.0%
!! GAATAGAAAGTATAAGAAGA+GGG - chr4_2:35396410-35396429 None:intergenic 25.0%
!! AGAATAGAAAGTATAAGAAG+AGG - chr4_2:35396411-35396430 None:intergenic 25.0%
! GAATAGTAATTATATGAGGT+TGG - chr4_2:35396624-35396643 None:intergenic 25.0%
! CAAGGAATAGTAATTATATG+AGG - chr4_2:35396628-35396647 None:intergenic 25.0%
!!! TTTTGTGTGATTGGTTTGAA+AGG - chr4_2:35388929-35388948 None:intergenic 30.0%
! AACAAAGGTTTTTGTGTGAT+TGG - chr4_2:35388938-35388957 None:intergenic 30.0%
ATCACACAAAAACCTTTGTT+TGG + chr4_2:35388938-35388957 Msa0598560:five_prime_UTR 30.0%
TTTGAATTAAGGCCAAACAA+AGG - chr4_2:35388953-35388972 None:intergenic 30.0%
ATTCATGGAATCCTCAAATT+GGG + chr4_2:35389002-35389021 Msa0598560:exon 30.0%
ATTTAGTGTGTTTAACCGTA+AGG - chr4_2:35389110-35389129 None:intergenic 30.0%
!! TGCAGTAAAATTTTGGTGTA+AGG - chr4_2:35389133-35389152 None:intergenic 30.0%
CAGCTCAAATTCTAAATTGT+TGG + chr4_2:35389230-35389249 Msa0598560:CDS 30.0%
!! TCCCTTTGAGATTAATGATA+TGG + chr4_2:35389592-35389611 Msa0598560:intron 30.0%
CCCATATCATTAATCTCAAA+GGG - chr4_2:35389596-35389615 None:intergenic 30.0%
!! CCCTTTGAGATTAATGATAT+GGG + chr4_2:35389593-35389612 Msa0598560:intron 30.0%
ACCCATATCATTAATCTCAA+AGG - chr4_2:35389597-35389616 None:intergenic 30.0%
ACGGGGGAAAATTAATAAAA+AGG + chr4_2:35389634-35389653 Msa0598560:intron 30.0%
CGGGGGAAAATTAATAAAAA+GGG + chr4_2:35389635-35389654 Msa0598560:intron 30.0%
TTAATAAAAAGGGAACAACG+AGG + chr4_2:35389645-35389664 Msa0598560:intron 30.0%
CCCTTGACAATATAAAATGA+TGG - chr4_2:35389865-35389884 None:intergenic 30.0%
!!! GAATGGTCTGTTTTTTTTGT+CGG + chr4_2:35389980-35389999 Msa0598560:intron 30.0%
AAAAAAAATTAAACTCGGGG+AGG + chr4_2:35390326-35390345 Msa0598560:intron 30.0%
ATTAGCATTTAATTGGTCGT+TGG + chr4_2:35390481-35390500 Msa0598560:intron 30.0%
TGTATGAAGATATAGCTATG+TGG - chr4_2:35390509-35390528 None:intergenic 30.0%
!! AGAGTATTGCTTATCATCAA+AGG + chr4_2:35390563-35390582 Msa0598560:intron 30.0%
ATCATCAAAGGATTTAAACG+TGG + chr4_2:35390575-35390594 Msa0598560:intron 30.0%
TATACCGTGTGAATCTTAAT+CGG - chr4_2:35390821-35390840 None:intergenic 30.0%
AATTATTTGAACCAGATGTG+TGG - chr4_2:35391043-35391062 None:intergenic 30.0%
CCTTAACCAAAACATCTTAT+AGG - chr4_2:35391538-35391557 None:intergenic 30.0%
!!! CCTATAAGATGTTTTGGTTA+AGG + chr4_2:35391535-35391554 Msa0598560:intron 30.0%
!!! ATAAGATGTTTTGGTTAAGG+TGG + chr4_2:35391538-35391557 Msa0598560:intron 30.0%
!! TTTTGGTTAAGGTGGAATAA+AGG + chr4_2:35391546-35391565 Msa0598560:intron 30.0%
TTTAAATTCCACAGGCAAAT+AGG - chr4_2:35391578-35391597 None:intergenic 30.0%
GTATAATCAAGACAAACCAA+AGG + chr4_2:35392038-35392057 Msa0598560:intron 30.0%
AAGCTTAAAGGTAAGTAAAC+TGG + chr4_2:35392150-35392169 Msa0598560:intron 30.0%
! AATGTGATTAGTTAGGGAAA+TGG + chr4_2:35392421-35392440 Msa0598560:intron 30.0%
TATTAGGCGACAAATGAATT+CGG - chr4_2:35392471-35392490 None:intergenic 30.0%
GGTCTAGAAGATTAATTACT+TGG + chr4_2:35392576-35392595 Msa0598560:intron 30.0%
AGATTAATTACTTGGCTAGT+CGG + chr4_2:35392584-35392603 Msa0598560:intron 30.0%
ATTGAAGTTTGAAGGATTTG+GGG - chr4_2:35392712-35392731 None:intergenic 30.0%
CTATTGAAGTTTGAAGGATT+TGG - chr4_2:35392714-35392733 None:intergenic 30.0%
CACATACTATTGAAGTTTGA+AGG - chr4_2:35392720-35392739 None:intergenic 30.0%
TTCAATAGTATGTGCTAATG+TGG + chr4_2:35392726-35392745 Msa0598560:intron 30.0%
!!! TTTTTCAAGGTGAATAAGTG+AGG - chr4_2:35392865-35392884 None:intergenic 30.0%
!!! GCTAGAATTCACTTTTTTCA+AGG - chr4_2:35392878-35392897 None:intergenic 30.0%
!!! TTTTTTGTCAGATTGCATAG+TGG - chr4_2:35392900-35392919 None:intergenic 30.0%
AATGCAAGAAAGAACAGAAT+GGG + chr4_2:35393017-35393036 Msa0598560:CDS 30.0%
! TTAGGATTAGCAAAACTCAA+AGG - chr4_2:35393166-35393185 None:intergenic 30.0%
CTGCATATCGTAATAAATGA+TGG - chr4_2:35393245-35393264 None:intergenic 30.0%
CATCATTTATTACGATATGC+AGG + chr4_2:35393243-35393262 Msa0598560:intron 30.0%
! TTAGATTATGTGATGATGAG+CGG - chr4_2:35393707-35393726 None:intergenic 30.0%
!! CTGTTTTTCCATTTGCATAT+TGG - chr4_2:35393800-35393819 None:intergenic 30.0%
CTGAACCTATCAATTTAAGA+TGG - chr4_2:35393959-35393978 None:intergenic 30.0%
! ATTCATTTCCTTTGGTGATA+TGG + chr4_2:35394389-35394408 Msa0598560:CDS 30.0%
! TTCATTTCCTTTGGTGATAT+GGG + chr4_2:35394390-35394409 Msa0598560:CDS 30.0%
! ACATCTTCAATTTGAAGTGT+CGG + chr4_2:35394652-35394671 Msa0598560:intron 30.0%
CTGTTCAAATTCAATCAAGA+TGG - chr4_2:35394697-35394716 None:intergenic 30.0%
AAACACTGAGTTTACATTGT+TGG - chr4_2:35394766-35394785 None:intergenic 30.0%
! TTTTACCTGCTCAGAATTTT+CGG - chr4_2:35395187-35395206 None:intergenic 30.0%
TTAATAGACAACATACTCCT+TGG + chr4_2:35395325-35395344 Msa0598560:CDS 30.0%
AAAGACAAAGGAAAACTAGA+TGG - chr4_2:35395554-35395573 None:intergenic 30.0%
TTTAGATGATAATCCGTTGT+TGG - chr4_2:35395651-35395670 None:intergenic 30.0%
TCAGAAATTTATTAACGCTG+TGG + chr4_2:35395673-35395692 Msa0598560:CDS 30.0%
! ACTCCCTTTTGATCTTTTAT+AGG - chr4_2:35395884-35395903 None:intergenic 30.0%
! CAAACTCAGAAATCCTTTTT+AGG - chr4_2:35396534-35396553 None:intergenic 30.0%
CTAAAAAGGATTTCTGAGTT+TGG + chr4_2:35396532-35396551 Msa0598560:CDS 30.0%
ATCAGATACAAGAGAAGTTA+AGG + chr4_2:35396730-35396749 Msa0598560:CDS 30.0%
AGAAACAAATGCAGAATTGT+AGG + chr4_2:35396798-35396817 Msa0598560:three_prime_UTR 30.0%
CCGATTATGACAAGAAATAA+GGG - chr4_2:35397004-35397023 None:intergenic 30.0%
! CCCTTATTTCTTGTCATAAT+CGG + chr4_2:35397001-35397020 Msa0598560:three_prime_UTR 30.0%
! CCTTATTTCTTGTCATAATC+GGG + chr4_2:35397002-35397021 Msa0598560:three_prime_UTR 30.0%
GGTTTGAAAGGAAGAAAATG+TGG - chr4_2:35388917-35388936 None:intergenic 35.0%
CATTCATGGAATCCTCAAAT+TGG + chr4_2:35389001-35389020 Msa0598560:exon 35.0%
ATGTTTGAGAACCCAATTTG+AGG - chr4_2:35389016-35389035 None:intergenic 35.0%
TAGACATTGAAGGGCTAATA+AGG - chr4_2:35389062-35389081 None:intergenic 35.0%
GGAAAGTTGTAGACATTGAA+GGG - chr4_2:35389071-35389090 None:intergenic 35.0%
ACGAGGATTTGTGATATTGA+TGG + chr4_2:35389662-35389681 Msa0598560:intron 35.0%
!! GATGGTTTCTAGTAATAGCA+TGG + chr4_2:35389680-35389699 Msa0598560:intron 35.0%
GAAGATAAGGTGGTTGAAAA+TGG - chr4_2:35389760-35389779 None:intergenic 35.0%
AATTATCCTCGAAGATAAGG+TGG - chr4_2:35389770-35389789 None:intergenic 35.0%
CAATAAACATCCAAAGGTTG+TGG - chr4_2:35389797-35389816 None:intergenic 35.0%
AAAACAGACCATTCCATTTG+AGG - chr4_2:35389974-35389993 None:intergenic 35.0%
!! ATATTTTGGGGGGTTTTCAT+CGG - chr4_2:35390106-35390125 None:intergenic 35.0%
GTATATTGAAGGTGACAACT+TGG - chr4_2:35390241-35390260 None:intergenic 35.0%
AAGCAATACTCTCAATCACA+AGG - chr4_2:35390555-35390574 None:intergenic 35.0%
TTTAAACGTGGACCATTCAA+AGG + chr4_2:35390587-35390606 Msa0598560:intron 35.0%
CCACGTTTAAATCCTTTGAA+TGG - chr4_2:35390602-35390621 None:intergenic 35.0%
CCATTCAAAGGATTTAAACG+TGG + chr4_2:35390599-35390618 Msa0598560:intron 35.0%
TCAACCGATTAAGATTCACA+CGG + chr4_2:35390814-35390833 Msa0598560:intron 35.0%
ACATGTCTTTATCAATGCAG+TGG + chr4_2:35390992-35391011 Msa0598560:intron 35.0%
CATGTCTTTATCAATGCAGT+GGG + chr4_2:35390993-35391012 Msa0598560:intron 35.0%
ATGTCTTTATCAATGCAGTG+GGG + chr4_2:35390994-35391013 Msa0598560:intron 35.0%
!! CTGTATGATTTTGACGTGTT+GGG - chr4_2:35391136-35391155 None:intergenic 35.0%
!! TCTGTATGATTTTGACGTGT+TGG - chr4_2:35391137-35391156 None:intergenic 35.0%
GATATAGTACCTGTCATAGT+AGG + chr4_2:35391402-35391421 Msa0598560:intron 35.0%
GAGATCAAAACAATGTTTCG+TGG + chr4_2:35391508-35391527 Msa0598560:intron 35.0%
! GGCATTCCTATAAGATGTTT+TGG + chr4_2:35391529-35391548 Msa0598560:intron 35.0%
! TGTCCTCTTTTATCTCTTTG+CGG - chr4_2:35391963-35391982 None:intergenic 35.0%
CATGAAGAAAACTACGACTT+CGG + chr4_2:35392181-35392200 Msa0598560:intron 35.0%
! TACTTCTTTTCCTAACTCCT+GGG - chr4_2:35392501-35392520 None:intergenic 35.0%
GACATGCATTGTTATATGCT+GGG + chr4_2:35392817-35392836 Msa0598560:intron 35.0%
ACATGCATTGTTATATGCTG+GGG + chr4_2:35392818-35392837 Msa0598560:intron 35.0%
! TTTTTGCAGCTCATGTAATC+TGG - chr4_2:35392992-35393011 None:intergenic 35.0%
GAATGCAAGAAAGAACAGAA+TGG + chr4_2:35393016-35393035 Msa0598560:CDS 35.0%
ATAGAGTTTGTGTTCTTCAC+TGG + chr4_2:35393103-35393122 Msa0598560:CDS 35.0%
ATTAGCAAAACTCAAAGGAG+TGG - chr4_2:35393161-35393180 None:intergenic 35.0%
! AATCCTAAGAAGCCACTTTA+TGG + chr4_2:35393178-35393197 Msa0598560:CDS 35.0%
CTTGAGATATGTCCATAAAG+TGG - chr4_2:35393193-35393212 None:intergenic 35.0%
!!! GGGTTTTAAATAAAGGTTCG+CGG + chr4_2:35393264-35393283 Msa0598560:intron 35.0%
AGAGAATTACGGTCAAATGT+GGG - chr4_2:35393368-35393387 None:intergenic 35.0%
!!! AGGGTTTTAAATAGAGATCG+CGG - chr4_2:35393427-35393446 None:intergenic 35.0%
TAAACTCTTTCATGTTCGGT+TGG - chr4_2:35393487-35393506 None:intergenic 35.0%
GATTTGTGATTTCGAAACAG+TGG - chr4_2:35393540-35393559 None:intergenic 35.0%
!! TTTGCATATTGGATTTGCTG+AGG - chr4_2:35393789-35393808 None:intergenic 35.0%
CAGCAAATCCAATATGCAAA+TGG + chr4_2:35393789-35393808 Msa0598560:CDS 35.0%
TTCATACCTTCCATATCTGT+AGG - chr4_2:35394075-35394094 None:intergenic 35.0%
GAGCTCAAATTCATTTCCTT+TGG + chr4_2:35394381-35394400 Msa0598560:CDS 35.0%
TTCAGAAGAACACTACATTC+AGG + chr4_2:35394431-35394450 Msa0598560:CDS 35.0%
ACGCATTAAGAAATGACTAG+TGG + chr4_2:35394508-35394527 Msa0598560:intron 35.0%
TTGATTGAATTTGAACAGCC+TGG + chr4_2:35394699-35394718 Msa0598560:intron 35.0%
GTAAACTCAGTGTTTCACAT+TGG + chr4_2:35394771-35394790 Msa0598560:CDS 35.0%
!!! AACTGGTTTTCTAGCAGAAT+GGG + chr4_2:35394809-35394828 Msa0598560:CDS 35.0%
TTGAAGCTACTGGACTAATA+AGG - chr4_2:35394848-35394867 None:intergenic 35.0%
TATGAAACTCTTGAAGCTAC+TGG - chr4_2:35394858-35394877 None:intergenic 35.0%
GTTTCATACATGACAGCAAT+CGG + chr4_2:35394870-35394889 Msa0598560:CDS 35.0%
TTTCATACATGACAGCAATC+GGG + chr4_2:35394871-35394890 Msa0598560:CDS 35.0%
!! TTCAGAGATTATGTCGATTC+TGG + chr4_2:35395009-35395028 Msa0598560:intron 35.0%
TAATATCAACCGAACATGAC+TGG + chr4_2:35395160-35395179 Msa0598560:CDS 35.0%
GCAGTATAACTGGATGAAAA+AGG + chr4_2:35395290-35395309 Msa0598560:intron 35.0%
TAACTGGATGAAAAAGGACA+TGG + chr4_2:35395296-35395315 Msa0598560:CDS 35.0%
!!! CTACAATTCCGTTATTTTGG+CGG - chr4_2:35395495-35395514 None:intergenic 35.0%
GTACATTGTGAACATGAAAC+AGG + chr4_2:35395781-35395800 Msa0598560:intron 35.0%
TTCTCTCATAGTTATGCACA+TGG - chr4_2:35395826-35395845 None:intergenic 35.0%
! ATAGAAAAGAGTGTGACGAA+AGG - chr4_2:35396007-35396026 None:intergenic 35.0%
! AGAAAGTATAAGAAGAGGGA+AGG - chr4_2:35396406-35396425 None:intergenic 35.0%
GTATGAATGTTCTGTTGCAT+TGG + chr4_2:35396491-35396510 Msa0598560:intron 35.0%
CCCGATTATGACAAGAAATA+AGG - chr4_2:35397005-35397024 None:intergenic 35.0%
CTTTAAATAGGCTAGACCAT+AGG - chr4_2:35397101-35397120 None:intergenic 35.0%
ACAGACCAAAACCAAAACCA+AGG + chr4_2:35388891-35388910 Msa0598560:five_prime_UTR 40.0%
!! AGAAAATGTGGCCTTGGTTT+TGG - chr4_2:35388905-35388924 None:intergenic 40.0%
AAAGGAAGAAAATGTGGCCT+TGG - chr4_2:35388911-35388930 None:intergenic 40.0%
GGGAAAGTTGTAGACATTGA+AGG - chr4_2:35389072-35389091 None:intergenic 40.0%
AACTTTCCCTTCCTCAACTT+TGG + chr4_2:35389083-35389102 Msa0598560:CDS 40.0%
TAAGGTCCAAAGTTGAGGAA+GGG - chr4_2:35389092-35389111 None:intergenic 40.0%
TTCCTCAACTTTGGACCTTA+CGG + chr4_2:35389092-35389111 Msa0598560:CDS 40.0%
TTTCAACCACCTTATCTTCG+AGG + chr4_2:35389761-35389780 Msa0598560:intron 40.0%
GGGAATTATCCTCGAAGATA+AGG - chr4_2:35389773-35389792 None:intergenic 40.0%
ATAATTCCCACCACAACCTT+TGG + chr4_2:35389784-35389803 Msa0598560:intron 40.0%
AAACATCCAAAGGTTGTGGT+GGG - chr4_2:35389793-35389812 None:intergenic 40.0%
TAAACATCCAAAGGTTGTGG+TGG - chr4_2:35389794-35389813 None:intergenic 40.0%
! CATCGTGAATTTAGCTCAGT+TGG - chr4_2:35390048-35390067 None:intergenic 40.0%
TGCAAACCGTTCAATGAAAC+TGG - chr4_2:35390626-35390645 None:intergenic 40.0%
!! AATGGATTGGTTCAGATGGA+GGG - chr4_2:35390664-35390683 None:intergenic 40.0%
!! AAATGGATTGGTTCAGATGG+AGG - chr4_2:35390665-35390684 None:intergenic 40.0%
!! TCGAAATGGATTGGTTCAGA+TGG - chr4_2:35390668-35390687 None:intergenic 40.0%
!! AATGGATTGGTTCAGATGGA+GGG - chr4_2:35390664-35390683 None:intergenic 40.0%
!! TGACAATGGATTGGTTCAGA+TGG - chr4_2:35390695-35390714 None:intergenic 40.0%
AGATTCACACGGTATATGCA+TGG + chr4_2:35390825-35390844 Msa0598560:intron 40.0%
! CAGCTCTATGGATTTGAGAT+TGG - chr4_2:35390947-35390966 None:intergenic 40.0%
ACCAGATGTGTGGATATTGA+GGG - chr4_2:35391033-35391052 None:intergenic 40.0%
AACCAGATGTGTGGATATTG+AGG - chr4_2:35391034-35391053 None:intergenic 40.0%
! GTGCTATTGAGATCGTAATG+AGG - chr4_2:35391188-35391207 None:intergenic 40.0%
TACCTGTCATAGTAGGAACA+TGG + chr4_2:35391409-35391428 Msa0598560:intron 40.0%
GGTATATTCCTATTTGCCTG+TGG + chr4_2:35391567-35391586 Msa0598560:intron 40.0%
CTTTGCGGCACTTATGTTAT+GGG - chr4_2:35391948-35391967 None:intergenic 40.0%
TCTTTGCGGCACTTATGTTA+TGG - chr4_2:35391949-35391968 None:intergenic 40.0%
ATCAAGACAAACCAAAGGGT+TGG + chr4_2:35392043-35392062 Msa0598560:intron 40.0%
ACTCCTGGGTAGTGTTTATT+AGG - chr4_2:35392487-35392506 None:intergenic 40.0%
ATAAACACTACCCAGGAGTT+AGG + chr4_2:35392488-35392507 Msa0598560:intron 40.0%
! CTACTTCTTTTCCTAACTCC+TGG - chr4_2:35392502-35392521 None:intergenic 40.0%
GAAGGATTTGGGGAATCATA+AGG - chr4_2:35392702-35392721 None:intergenic 40.0%
TACCAACAGAGCTATACTCA+CGG - chr4_2:35392795-35392814 None:intergenic 40.0%
! TGAGTATAGCTCTGTTGGTA+GGG + chr4_2:35392795-35392814 Msa0598560:intron 40.0%
GGACATGCATTGTTATATGC+TGG + chr4_2:35392816-35392835 Msa0598560:intron 40.0%
TGTCCATAAAGTGGCTTCTT+AGG - chr4_2:35393184-35393203 None:intergenic 40.0%
ACTTGGGCCGCAATATATAA+TGG + chr4_2:35393293-35393312 Msa0598560:intron 40.0%
CAGAGAATTACGGTCAAATG+TGG - chr4_2:35393369-35393388 None:intergenic 40.0%
CCTTAGACTGCAGAGAATTA+CGG - chr4_2:35393379-35393398 None:intergenic 40.0%
CGTAATTCTCTGCAGTCTAA+GGG + chr4_2:35393377-35393396 Msa0598560:intron 40.0%
!! ATGATGAGCGGTTGTTTTGT+CGG - chr4_2:35393695-35393714 None:intergenic 40.0%
TGTTGCAGATGAGATTGACA+TGG + chr4_2:35393745-35393764 Msa0598560:intron 40.0%
GTTGCAGATGAGATTGACAT+GGG + chr4_2:35393746-35393765 Msa0598560:intron 40.0%
!! ATGAGATTGACATGGGTTAG+TGG + chr4_2:35393753-35393772 Msa0598560:CDS 40.0%
!! TGAGATTGACATGGGTTAGT+GGG + chr4_2:35393754-35393773 Msa0598560:CDS 40.0%
ATCATGCCATCCAAAATCCT+TGG - chr4_2:35393997-35394016 None:intergenic 40.0%
ATCCATTCAGCACTTATGAC+AGG + chr4_2:35394026-35394045 Msa0598560:CDS 40.0%
AGTGCTTACTCCTACAGATA+TGG + chr4_2:35394062-35394081 Msa0598560:CDS 40.0%
CTTACTCCTACAGATATGGA+AGG + chr4_2:35394066-35394085 Msa0598560:CDS 40.0%
TCTAAATTGCGGTCTCTAAC+TGG - chr4_2:35394166-35394185 None:intergenic 40.0%
! AGACCGCAATTTAGAACCAT+GGG + chr4_2:35394171-35394190 Msa0598560:intron 40.0%
CCAATGATGGTCTAGTAACT+CGG + chr4_2:35394305-35394324 Msa0598560:intron 40.0%
AGCTGGTGGAGTTGAAAATT+TGG - chr4_2:35394349-35394368 None:intergenic 40.0%
! AAATTTTCAACTCCACCAGC+TGG + chr4_2:35394348-35394367 Msa0598560:CDS 40.0%
! GGTTTTTCCCATATCACCAA+AGG - chr4_2:35394400-35394419 None:intergenic 40.0%
!! TTCTTCTGAAGCATCAAGAG+GGG - chr4_2:35394421-35394440 None:intergenic 40.0%
!! GTTCTTCTGAAGCATCAAGA+GGG - chr4_2:35394422-35394441 None:intergenic 40.0%
!! TGTTCTTCTGAAGCATCAAG+AGG - chr4_2:35394423-35394442 None:intergenic 40.0%
GGAGACATAAGTTATGCAAC+TGG + chr4_2:35394792-35394811 Msa0598560:CDS 40.0%
!!! CAACTGGTTTTCTAGCAGAA+TGG + chr4_2:35394808-35394827 Msa0598560:CDS 40.0%
GTTTATGTTACTCCTGACTC+TGG + chr4_2:35395036-35395055 Msa0598560:CDS 40.0%
! CCTTGTTCAATAGAGTACCA+AGG - chr4_2:35395123-35395142 None:intergenic 40.0%
CCTTGGTACTCTATTGAACA+AGG + chr4_2:35395120-35395139 Msa0598560:CDS 40.0%
! ATTTTCGGACCAGTCATGTT+CGG - chr4_2:35395172-35395191 None:intergenic 40.0%
!! TACTCCTTGGCTGATTTTCA+TGG + chr4_2:35395338-35395357 Msa0598560:CDS 40.0%
!! ACTCCTTGGCTGATTTTCAT+GGG + chr4_2:35395339-35395358 Msa0598560:CDS 40.0%
AACTAGACAACAAACTCGTG+AGG + chr4_2:35395409-35395428 Msa0598560:intron 40.0%
CTACCAAACCGCCAAAATAA+CGG + chr4_2:35395484-35395503 Msa0598560:intron 40.0%
!!! ATTCCGTTATTTTGGCGGTT+TGG - chr4_2:35395490-35395509 None:intergenic 40.0%
CCAATGTACACTTCCAACAA+CGG + chr4_2:35395635-35395654 Msa0598560:CDS 40.0%
! GCCATTGCTGTTACAGAATA+AGG + chr4_2:35395697-35395716 Msa0598560:CDS 40.0%
! GCCTTATTCTGTAACAGCAA+TGG - chr4_2:35395701-35395720 None:intergenic 40.0%
GAACATCACTCCTTAGAACT+CGG + chr4_2:35395723-35395742 Msa0598560:intron 40.0%
CTCTATGTAACCGAGTTCTA+AGG - chr4_2:35395736-35395755 None:intergenic 40.0%
! GAACATGAAACAGGTTGACT+TGG + chr4_2:35395790-35395809 Msa0598560:intron 40.0%
!!! CAGGTTGACTTGGTTCTTTT+TGG + chr4_2:35395800-35395819 Msa0598560:intron 40.0%
AAATTGTGGTTATAGCGCAG+TGG + chr4_2:35396039-35396058 Msa0598560:intron 40.0%
AGCGGCCGCAATATATATAA+AGG - chr4_2:35396339-35396358 None:intergenic 40.0%
GCGGTATGCATTTACAATAG+CGG - chr4_2:35396357-35396376 None:intergenic 40.0%
GATGTCACAAACTGCAATGA+AGG - chr4_2:35396713-35396732 None:intergenic 40.0%
TATTATACCCCTACCTACAG+TGG + chr4_2:35397049-35397068 Msa0598560:three_prime_UTR 40.0%
ATTATACCCCTACCTACAGT+GGG + chr4_2:35397050-35397069 Msa0598560:three_prime_UTR 40.0%
!!! TGTGGCCTTGGTTTTGGTTT+TGG - chr4_2:35388899-35388918 None:intergenic 45.0%
GTAAGGTCCAAAGTTGAGGA+AGG - chr4_2:35389093-35389112 None:intergenic 45.0%
AACCGTAAGGTCCAAAGTTG+AGG - chr4_2:35389097-35389116 None:intergenic 45.0%
GTTGGATGAGGAGTTTGTCA+CGG + chr4_2:35389248-35389267 Msa0598560:CDS 45.0%
GACATACCTTGACAGGGTAA+TGG - chr4_2:35389517-35389536 None:intergenic 45.0%
GTGCATGACATACCTTGACA+GGG - chr4_2:35389523-35389542 None:intergenic 45.0%
TGTGCATGACATACCTTGAC+AGG - chr4_2:35389524-35389543 None:intergenic 45.0%
AGTGTCACACCTACCTCAAA+TGG + chr4_2:35389958-35389977 Msa0598560:intron 45.0%
CACACCTACCTCAAATGGAA+TGG + chr4_2:35389963-35389982 Msa0598560:intron 45.0%
! CAGACCATTCCATTTGAGGT+AGG - chr4_2:35389970-35389989 None:intergenic 45.0%
CGTGGTCCAGTTTCATTGAA+CGG + chr4_2:35390617-35390636 Msa0598560:intron 45.0%
GGTTTGCACACCCTAAGATT+CGG + chr4_2:35390638-35390657 Msa0598560:intron 45.0%
!! CAATGGATTGGTTCAGATGG+AGG - chr4_2:35390692-35390711 None:intergenic 45.0%
CGTCGACATAAACAGCTCTA+TGG - chr4_2:35390959-35390978 None:intergenic 45.0%
TCCCTCAATATCCACACATC+TGG + chr4_2:35391029-35391048 Msa0598560:intron 45.0%
GTCCATGTTCCTACTATGAC+AGG - chr4_2:35391414-35391433 None:intergenic 45.0%
GTGCCGCAAAGAGATAAAAG+AGG + chr4_2:35391957-35391976 Msa0598560:intron 45.0%
GAGATAACTCTCATGTGTGG+TGG - chr4_2:35392070-35392089 None:intergenic 45.0%
AGGGAGATAACTCTCATGTG+TGG - chr4_2:35392073-35392092 None:intergenic 45.0%
TCGCCTAATAAACACTACCC+AGG + chr4_2:35392481-35392500 Msa0598560:intron 45.0%
! GAAGCATCATCACTGCTTGT+AGG - chr4_2:35392535-35392554 None:intergenic 45.0%
ACCAACAGAGCTATACTCAC+GGG - chr4_2:35392794-35392813 None:intergenic 45.0%
! GTGAGTATAGCTCTGTTGGT+AGG + chr4_2:35392794-35392813 Msa0598560:intron 45.0%
! GTGAATAAGTGAGGTGTCCA+GGG - chr4_2:35392856-35392875 None:intergenic 45.0%
TGCAGTGTGACAACTTGTAG+TGG + chr4_2:35393043-35393062 Msa0598560:CDS 45.0%
GAGTTTGTGTTCTTCACTGG+TGG + chr4_2:35393106-35393125 Msa0598560:CDS 45.0%
CCGTAATTCTCTGCAGTCTA+AGG + chr4_2:35393376-35393395 Msa0598560:intron 45.0%
!! GGTTGTTTTGTCGGTATCTG+TGG - chr4_2:35393686-35393705 None:intergenic 45.0%
!! GAGATTGACATGGGTTAGTG+GGG + chr4_2:35393755-35393774 Msa0598560:CDS 45.0%
! GATTTTGGATGGCATGATCC+AGG + chr4_2:35393999-35394018 Msa0598560:CDS 45.0%
! AGTGCTGAATGGATGAATCC+TGG - chr4_2:35394020-35394039 None:intergenic 45.0%
!! GTCCTGTCATAAGTGCTGAA+TGG - chr4_2:35394031-35394050 None:intergenic 45.0%
CTGTAGGAGTAAGCACTTGA+TGG - chr4_2:35394059-35394078 None:intergenic 45.0%
! GAGACCGCAATTTAGAACCA+TGG + chr4_2:35394170-35394189 Msa0598560:intron 45.0%
!! CTGCCCATGGTTCTAAATTG+CGG - chr4_2:35394177-35394196 None:intergenic 45.0%
CGCATTAAATAGTCTGCCCA+TGG - chr4_2:35394190-35394209 None:intergenic 45.0%
CCGAGTTACTAGACCATCAT+TGG - chr4_2:35394308-35394327 None:intergenic 45.0%
GTCGATGTCAGACACAATAC+TGG - chr4_2:35394611-35394630 None:intergenic 45.0%
! TTGATAACCGATAGTGCTCC+AGG - chr4_2:35394720-35394739 None:intergenic 45.0%
TATGTTACTCCTGACTCTGG+TGG + chr4_2:35395039-35395058 Msa0598560:CDS 45.0%
!! CTCCTTGGCTGATTTTCATG+GGG + chr4_2:35395340-35395359 Msa0598560:CDS 45.0%
TACCCCATGAAAATCAGCCA+AGG - chr4_2:35395345-35395364 None:intergenic 45.0%
CAACAAACTCGTGAGGTCTA+TGG + chr4_2:35395416-35395435 Msa0598560:intron 45.0%
CCACCTTTAATCGCTTGAAC+CGG + chr4_2:35395451-35395470 Msa0598560:intron 45.0%
GTTCCGGTTCAAGCGATTAA+AGG - chr4_2:35395457-35395476 None:intergenic 45.0%
! GTTTGGTAGCCATTTGGTTC+CGG - chr4_2:35395473-35395492 None:intergenic 45.0%
! CCGTTGTTGGAAGTGTACAT+TGG - chr4_2:35395638-35395657 None:intergenic 45.0%
ATGCCAATGACAGCATGTAC+AGG - chr4_2:35395938-35395957 None:intergenic 45.0%
TGTACATGCTGTCATTGGCA+TGG + chr4_2:35395937-35395956 Msa0598560:CDS 45.0%
TACTACCGACCTATGAAGCA+CGG + chr4_2:35396096-35396115 Msa0598560:intron 45.0%
TGTATCCGTGCTTCATAGGT+CGG - chr4_2:35396104-35396123 None:intergenic 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - chr4_2:35396108-35396127 None:intergenic 45.0%
ATGAAGCACGGATACAGACA+TGG + chr4_2:35396108-35396127 Msa0598560:intron 45.0%
!! ATTATTAGCGGTGTCGTGTC+TGG - chr4_2:35396137-35396156 None:intergenic 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG + chr4_2:35396185-35396204 Msa0598560:intron 45.0%
! GAATGTTCTGTTGCATTGGC+AGG + chr4_2:35396495-35396514 Msa0598560:intron 45.0%
ACTATTCCCACTGTAGGTAG+GGG - chr4_2:35397059-35397078 None:intergenic 45.0%
GACTATTCCCACTGTAGGTA+GGG - chr4_2:35397060-35397079 None:intergenic 45.0%
!! AAAAATATGATAAAAAATTA+AGG - chr4_2:35391222-35391241 None:intergenic 5.0%
TTTGTCACGGTTACCGTCAC+CGG + chr4_2:35389261-35389280 Msa0598560:CDS 50.0%
ATCTCTCGGTTTCGAAACGC+CGG - chr4_2:35389283-35389302 None:intergenic 50.0%
CGAAACCGAGAGATGGAGAT+TGG + chr4_2:35389289-35389308 Msa0598560:CDS 50.0%
ACCGAGAGATGGAGATTGGT+TGG + chr4_2:35389293-35389312 Msa0598560:CDS 50.0%
GCCAACCAATCTCCATCTCT+CGG - chr4_2:35389297-35389316 None:intergenic 50.0%
! ACAGGGTAATGGCAAAGCAG+AGG - chr4_2:35389506-35389525 None:intergenic 50.0%
GCTTTGCCATTACCCTGTCA+AGG + chr4_2:35389508-35389527 Msa0598560:CDS 50.0%
AGATGGAGGGCCGAATCTTA+GGG - chr4_2:35390651-35390670 None:intergenic 50.0%
GATGGAGGGTCGAAATGGAT+TGG - chr4_2:35390677-35390696 None:intergenic 50.0%
GTTCAGATGGAGGGTCGAAA+TGG - chr4_2:35390682-35390701 None:intergenic 50.0%
TATCAATGCAGTGGGGACTC+TGG + chr4_2:35391001-35391020 Msa0598560:intron 50.0%
CCAACAGAGCTATACTCACG+GGG - chr4_2:35392793-35392812 None:intergenic 50.0%
GCATTGTTATATGCTGGGGC+CGG + chr4_2:35392822-35392841 Msa0598560:intron 50.0%
CATTGTTATATGCTGGGGCC+GGG + chr4_2:35392823-35392842 Msa0598560:intron 50.0%
! GGTGAATAAGTGAGGTGTCC+AGG - chr4_2:35392857-35392876 None:intergenic 50.0%
AAGGAGTGGACCTTCCAACA+AGG - chr4_2:35393147-35393166 None:intergenic 50.0%
AAGGTTCGCGGTTGCAAACT+TGG + chr4_2:35393276-35393295 Msa0598560:intron 50.0%
AGGTTCGCGGTTGCAAACTT+GGG + chr4_2:35393277-35393296 Msa0598560:intron 50.0%
CTGTGACGCACTTGCAAATG+AGG + chr4_2:35393334-35393353 Msa0598560:intron 50.0%
CCAAAATCCTTGGCAGGACT+AGG - chr4_2:35393987-35394006 None:intergenic 50.0%
! CCTAGTCCTGCCAAGGATTT+TGG + chr4_2:35393984-35394003 Msa0598560:CDS 50.0%
! GTCCTGCCAAGGATTTTGGA+TGG + chr4_2:35393988-35394007 Msa0598560:CDS 50.0%
TGCCATCCAAAATCCTTGGC+AGG - chr4_2:35393993-35394012 None:intergenic 50.0%
GGTCTAGTAACTCGGCTGAT+TGG + chr4_2:35394313-35394332 Msa0598560:intron 50.0%
! TTTTCAACTCCACCAGCTGG+AGG + chr4_2:35394351-35394370 Msa0598560:CDS 50.0%
! TGAACAGCCTGGAGCACTAT+CGG + chr4_2:35394710-35394729 Msa0598560:intron 50.0%
CAGCAATCGGGAATCATGAG+AGG + chr4_2:35394883-35394902 Msa0598560:CDS 50.0%
TCCAATGCCAACTGCAGCAA+AGG + chr4_2:35395092-35395111 Msa0598560:CDS 50.0%
TCCTTTGCTGCAGTTGGCAT+TGG - chr4_2:35395096-35395115 None:intergenic 50.0%
GGCTTATCCTTTGCTGCAGT+TGG - chr4_2:35395102-35395121 None:intergenic 50.0%
CTGCAGCAAAGGATAAGCCT+TGG + chr4_2:35395103-35395122 Msa0598560:CDS 50.0%
CTGGTCCGAAAATTCTGAGC+AGG + chr4_2:35395179-35395198 Msa0598560:CDS 50.0%
CTCGTGAGGTCTATGGATCA+TGG + chr4_2:35395423-35395442 Msa0598560:intron 50.0%
CCGGTTCAAGCGATTAAAGG+TGG - chr4_2:35395454-35395473 None:intergenic 50.0%
TCGCTTGAACCGGAACCAAA+TGG + chr4_2:35395461-35395480 Msa0598560:intron 50.0%
!! TTGGCGGTTTGGTAGCCATT+TGG - chr4_2:35395479-35395498 None:intergenic 50.0%
GCTCCTGTACATGCTGTCAT+TGG + chr4_2:35395932-35395951 Msa0598560:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG - chr4_2:35396262-35396281 None:intergenic 50.0%
TTGTCGGCAGCTATGAAGCA+CGG - chr4_2:35396273-35396292 None:intergenic 50.0%
CTGAGAGCTGGAGCCTAAAA+AGG + chr4_2:35396518-35396537 Msa0598560:CDS 50.0%
GGACTATTCCCACTGTAGGT+AGG - chr4_2:35397061-35397080 None:intergenic 50.0%
ACCTACAGTGGGAATAGTCC+TGG + chr4_2:35397061-35397080 Msa0598560:three_prime_UTR 50.0%
GACCATAGGTCCTTGTTGGA+CGG - chr4_2:35397087-35397106 None:intergenic 50.0%
GCTAGACCATAGGTCCTTGT+TGG - chr4_2:35397091-35397110 None:intergenic 50.0%
GGCGTTTCGAAACCGAGAGA+TGG + chr4_2:35389282-35389301 Msa0598560:CDS 55.0%
CTCGGGGAGGCTTCATTTAG+AGG + chr4_2:35390339-35390358 Msa0598560:intron 55.0%
CAGATGGAGGGCCGAATCTT+AGG - chr4_2:35390652-35390671 None:intergenic 55.0%
AATGCAGTGGGGACTCTGGA+TGG + chr4_2:35391005-35391024 Msa0598560:intron 55.0%
TGTGTGGTGGTCCAACCCTT+TGG - chr4_2:35392057-35392076 None:intergenic 55.0%
! CCCCGTGAGTATAGCTCTGT+TGG + chr4_2:35392790-35392809 Msa0598560:intron 55.0%
TTTCTCAGCCCCTGCCTTGT+TGG + chr4_2:35393130-35393149 Msa0598560:CDS 55.0%
TGGACCTTCCAACAAGGCAG+GGG - chr4_2:35393141-35393160 None:intergenic 55.0%
GTGGACCTTCCAACAAGGCA+GGG - chr4_2:35393142-35393161 None:intergenic 55.0%
AGTGGACCTTCCAACAAGGC+AGG - chr4_2:35393143-35393162 None:intergenic 55.0%
!! GACATGGGTTAGTGGGGACA+AGG + chr4_2:35393761-35393780 Msa0598560:CDS 55.0%
AGTTGTGCCTAGTCCTGCCA+AGG + chr4_2:35393977-35393996 Msa0598560:CDS 55.0%
TCATCTGATCCTCCAGCTGG+TGG - chr4_2:35394363-35394382 None:intergenic 55.0%
AGCTCATCTGATCCTCCAGC+TGG - chr4_2:35394366-35394385 None:intergenic 55.0%
CCACATTCACCACCAGAGTC+AGG - chr4_2:35395051-35395070 None:intergenic 55.0%
! CCTGACTCTGGTGGTGAATG+TGG + chr4_2:35395048-35395067 Msa0598560:CDS 55.0%
CATGCTGTCATTGGCATGGC+TGG + chr4_2:35395941-35395960 Msa0598560:CDS 55.0%
CGTCGGACATGACACATGTC+CGG + chr4_2:35396208-35396227 Msa0598560:intron 55.0%
! GATTAGGCGTGTCTCGGTGT+CGG - chr4_2:35396240-35396259 None:intergenic 55.0%
! TCCTCGGATTAGGCGTGTCT+CGG - chr4_2:35396246-35396265 None:intergenic 55.0%
GCCAGGACTATTCCCACTGT+AGG - chr4_2:35397065-35397084 None:intergenic 55.0%
ATAGTCCTGGCCGTCCAACA+AGG + chr4_2:35397074-35397093 Msa0598560:three_prime_UTR 55.0%
CGGTTTCGAAACGCCGGTGA+CGG - chr4_2:35389277-35389296 None:intergenic 60.0%
GGTGTCCAGGGTTCGAATCC+CGG - chr4_2:35392844-35392863 None:intergenic 60.0%
! TCAGCCCCTGCCTTGTTGGA+AGG + chr4_2:35393134-35393153 Msa0598560:CDS 60.0%
!! GTCTCGGTGTCGGACATGAC+CGG - chr4_2:35396230-35396249 None:intergenic 60.0%
ACCGAGACACGCCTAATCCG+AGG + chr4_2:35396242-35396261 Msa0598560:intron 60.0%
GCACGGACACTCCTCGGATT+AGG - chr4_2:35396256-35396275 None:intergenic 60.0%
! TGCATTGGCAGGCTGAGAGC+TGG + chr4_2:35396506-35396525 Msa0598560:intron 60.0%
TAGGTCCTTGTTGGACGGCC+AGG - chr4_2:35397082-35397101 None:intergenic 60.0%
GGCCGTCCAACAAGGACCTA+TGG + chr4_2:35397082-35397101 Msa0598560:three_prime_UTR 60.0%
!! TGTCGGTGTCGTGTCGGCGT+CGG + chr4_2:35396191-35396210 Msa0598560:intron 65.0%
TGGGGCCGGGATTCGAACCC+TGG + chr4_2:35392836-35392855 Msa0598560:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 35388835 35397130 35388835 ID=Msa0598560;Name=Msa0598560
chr4_2 mRNA 35388835 35397130 35388835 ID=Msa0598560-mRNA-1;Parent=Msa0598560;Name=Msa0598560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=171|1|1|1|1|1|13|355|634
chr4_2 exon 35388835 35389340 35388835 ID=Msa0598560-mRNA-1:exon:8140;Parent=Msa0598560-mRNA-1
chr4_2 exon 35389442 35389529 35389442 ID=Msa0598560-mRNA-1:exon:8141;Parent=Msa0598560-mRNA-1
chr4_2 exon 35392968 35393234 35392968 ID=Msa0598560-mRNA-1:exon:8142;Parent=Msa0598560-mRNA-1
chr4_2 exon 35393753 35393861 35393753 ID=Msa0598560-mRNA-1:exon:8143;Parent=Msa0598560-mRNA-1
chr4_2 exon 35393973 35394087 35393973 ID=Msa0598560-mRNA-1:exon:8144;Parent=Msa0598560-mRNA-1
chr4_2 exon 35394320 35394452 35394320 ID=Msa0598560-mRNA-1:exon:8145;Parent=Msa0598560-mRNA-1
chr4_2 exon 35394717 35394904 35394717 ID=Msa0598560-mRNA-1:exon:8146;Parent=Msa0598560-mRNA-1
chr4_2 exon 35395014 35395200 35395014 ID=Msa0598560-mRNA-1:exon:8147;Parent=Msa0598560-mRNA-1
chr4_2 exon 35395294 35395361 35395294 ID=Msa0598560-mRNA-1:exon:8148;Parent=Msa0598560-mRNA-1
chr4_2 exon 35395628 35395718 35395628 ID=Msa0598560-mRNA-1:exon:8149;Parent=Msa0598560-mRNA-1
chr4_2 exon 35395803 35395991 35395803 ID=Msa0598560-mRNA-1:exon:8150;Parent=Msa0598560-mRNA-1
chr4_2 exon 35396517 35396597 35396517 ID=Msa0598560-mRNA-1:exon:8151;Parent=Msa0598560-mRNA-1
chr4_2 exon 35396722 35397130 35396722 ID=Msa0598560-mRNA-1:exon:8152;Parent=Msa0598560-mRNA-1
chr4_2 five_prime_UTR 35388835 35389005 35388835 ID=Msa0598560-mRNA-1:five_prime_utr;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35389006 35389340 35389006 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35389442 35389529 35389442 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35392968 35393234 35392968 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35393753 35393861 35393753 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35393973 35394087 35393973 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35394320 35394452 35394320 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35394717 35394904 35394717 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35395014 35395200 35395014 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35395294 35395361 35395294 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35395628 35395718 35395628 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35395803 35395991 35395803 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35396517 35396597 35396517 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 CDS 35396722 35396775 35396722 ID=Msa0598560-mRNA-1:cds;Parent=Msa0598560-mRNA-1
chr4_2 three_prime_UTR 35396776 35397130 35396776 ID=Msa0598560-mRNA-1:three_prime_utr;Parent=Msa0598560-mRNA-1
Gene Sequence

>Msa0598560

ATGGAATCCTCAAATTGGGTTCTCAAACATGTATTCATTTTACTCTTTTTCTTCCTTATTAGCCCTTCAATGTCTACAACTTTCCCTTCCTCAACTTTGGACCTTACGGTTAAACACACTAAATCCTTACACCAAAATTTTACTGCATTATCAGATTTTAGGTTGATAAATAGAAGAATTTTGAATGATTGTTCTCATTTAAGTCCTTATCTTAAACTGAATATCAGCTCAAATTCTAAATTGTTGGATGAGGAGTTTGTCACGGTTACCGTCACCGGCGTTTCGAAACCGAGAGATGGAGATTGGTTGGCTATGATCTCACCTTCAAATTCCAATGTTAAAGCTTGTCTTCTCAATGAGTTCTATTATTTACAAACTGGTGATACTGCAAAACTTCCTCTGCTTTGCCATTACCCTGTCAAGGCACAATACTTGAAAAACGATCCAGATTACATGAGCTGCAAAAAGAAAGAATGCAAGAAAGAACAGAATGGGAAATGCAGTGTGACAACTTGTAGTGGTTCAATAAAGTTTCATGTTATCAACATTAGAAGTGATATAGAGTTTGTGTTCTTCACTGGTGGCTTTCTCAGCCCCTGCCTTGTTGGAAGGTCCACTCCTTTGAGTTTTGCTAATCCTAAGAAGCCACTTTATGGACATATCTCAAGTATAGATTCAACTGCAACATCAATGAGATTGACATGGGTTAGTGGGGACAAGGAACCTCAGCAAATCCAATATGCAAATGGAAAAACAGTTACTTCTGCAGTCACTACTTTTTCACAGGAAGATATGTGCAGTTCAGTTGTGCCTAGTCCTGCCAAGGATTTTGGATGGCATGATCCAGGATTCATCCATTCAGCACTTATGACAGGACTTAAGCCATCAAGTGCTTACTCCTACAGATATGGAAGTAACTCGGCTGATTGGAGCGAACAAACCAAATTTTCAACTCCACCAGCTGGAGGATCAGATGAGCTCAAATTCATTTCCTTTGGTGATATGGGAAAAACCCCTCTTGATGCTTCAGAAGAACACTACATTCAGCCTGGAGCACTATCGGTTATCAAAGCTATAGCTAATGAAGTGAACTCCAACAATGTAAACTCAGTGTTTCACATTGGAGACATAAGTTATGCAACTGGTTTTCTAGCAGAATGGGATTTCTTCTTGAACCTTATTAGTCCAGTAGCTTCAAGAGTTTCATACATGACAGCAATCGGGAATCATGAGAGAGATTATGTCGATTCTGGTTCAGTTTATGTTACTCCTGACTCTGGTGGTGAATGTGGAGTACCGTATGAAACATACTTTCCAATGCCAACTGCAGCAAAGGATAAGCCTTGGTACTCTATTGAACAAGGAAGTGTTCATTTCATTGTAATATCAACCGAACATGACTGGTCCGAAAATTCTGAGCAGTATAACTGGATGAAAAAGGACATGGCATCTGTTAATAGACAACATACTCCTTGGCTGATTTTCATGGGACATAGACCAATGTACACTTCCAACAACGGATTATCATCTAAAGATCAGAAATTTATTAACGCTGTGGAGCCATTGCTGTTACAGAATAAGGTTGACTTGGTTCTTTTTGGCCATGTGCATAACTATGAGAGAACTTGTTCTGTCTATCAGAATAAGTGCAAAGCCATTCCTATAAAAGATCAAAAGGGAGTAGACACATATGATAACAGAAATTATACTGCTCCTGTACATGCTGTCATTGGCATGGCTGGTTTCGCCTTAGACAAATTCTCAAACAATGCTGAGAGCTGGAGCCTAAAAAGGATTTCTGAGTTTGGTTATTTAAGAGCACATGCTACTAGAAATGATTTAAACTTAGAGTTTGTGACATCAGATACAAGAGAAGTTAAGGACAGTTTTCGCATAACAAAGTGA

Protein sequence

>Msa0598560

MESSNWVLKHVFILLFFFLISPSMSTTFPSSTLDLTVKHTKSLHQNFTALSDFRLINRRILNDCSHLSPYLKLNISSNSKLLDEEFVTVTVTGVSKPRDGDWLAMISPSNSNVKACLLNEFYYLQTGDTAKLPLLCHYPVKAQYLKNDPDYMSCKKKECKKEQNGKCSVTTCSGSIKFHVINIRSDIEFVFFTGGFLSPCLVGRSTPLSFANPKKPLYGHISSIDSTATSMRLTWVSGDKEPQQIQYANGKTVTSAVTTFSQEDMCSSVVPSPAKDFGWHDPGFIHSALMTGLKPSSAYSYRYGSNSADWSEQTKFSTPPAGGSDELKFISFGDMGKTPLDASEEHYIQPGALSVIKAIANEVNSNNVNSVFHIGDISYATGFLAEWDFFLNLISPVASRVSYMTAIGNHERDYVDSGSVYVTPDSGGECGVPYETYFPMPTAAKDKPWYSIEQGSVHFIVISTEHDWSENSEQYNWMKKDMASVNRQHTPWLIFMGHRPMYTSNNGLSSKDQKFINAVEPLLLQNKVDLVLFGHVHNYERTCSVYQNKCKAIPIKDQKGVDTYDNRNYTAPVHAVIGMAGFALDKFSNNAESWSLKRISEFGYLRAHATRNDLNLEFVTSDTREVKDSFRITK*