Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401400 | XP_003607363.1 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1077 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401400 | sp|Q56YN3|NADK1_ARATH | 70.510 | 529 | 142 | 6 | 1 | 520 | 1 | 524 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401400 | G7JRM7 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1077 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1359080 | Msa1401400 | 0.807052 | 6.100613e-50 | -8.615850e-47 |
| Msa1391360 | Msa1401400 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
| Msa1396750 | Msa1401400 | 0.806277 | 8.895959e-50 | -8.615850e-47 |
| Msa0607600 | Msa1401400 | 0.832689 | 8.192125e-56 | -8.615850e-47 |
| Msa0687860 | Msa1401400 | 0.828229 | 1.009682e-54 | -8.615850e-47 |
| Msa0717920 | Msa1401400 | 0.863108 | 3.148671e-64 | -8.615850e-47 |
| Msa0766100 | Msa1401400 | 0.800488 | 1.407685e-48 | -8.615850e-47 |
| Msa0813320 | Msa1401400 | 0.834904 | 2.288278e-56 | -8.615850e-47 |
| Msa0227020 | Msa1401400 | 0.835434 | 1.681956e-56 | -8.615850e-47 |
| Msa0428510 | Msa1401400 | 0.823597 | 1.271642e-53 | -8.615850e-47 |
| Msa0259860 | Msa1401400 | 0.802180 | 6.341193e-49 | -8.615850e-47 |
| Msa0305340 | Msa1401400 | 0.841172 | 5.581231e-58 | -8.615850e-47 |
| Msa0341460 | Msa1401400 | 0.807656 | 4.544365e-50 | -8.615850e-47 |
| Msa0554580 | Msa1401400 | 0.930188 | 2.354246e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401400 | MtrunA17_Chr4g0039281 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1077 |
| Msa1401400 | MtrunA17_Chr3g0125211 | 45.706 | 326 | 166 | 5 | 197 | 517 | 660 | 979 | 7.52e-88 | 290 |
| Msa1401400 | MtrunA17_Chr1g0159621 | 45.260 | 327 | 166 | 6 | 197 | 517 | 689 | 1008 | 1.13e-81 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401400 | AT3G21070.2 | 70.510 | 529 | 142 | 6 | 1 | 520 | 1 | 524 | 0.0 | 748 |
| Msa1401400 | AT3G21070.3 | 70.510 | 529 | 142 | 6 | 1 | 520 | 79 | 602 | 0.0 | 746 |
| Msa1401400 | AT3G21070.1 | 72.521 | 484 | 121 | 3 | 44 | 520 | 1 | 479 | 0.0 | 723 |
| Msa1401400 | AT3G21070.4 | 61.468 | 327 | 112 | 6 | 1 | 318 | 79 | 400 | 1.62e-127 | 378 |
| Msa1401400 | AT1G21640.1 | 43.865 | 326 | 172 | 5 | 197 | 517 | 665 | 984 | 1.36e-81 | 274 |
| Msa1401400 | AT1G21640.2 | 42.773 | 339 | 171 | 6 | 197 | 517 | 665 | 998 | 6.17e-81 | 272 |
Find 160 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTGCTTTCTCAGAAAA+TGG | 0.204921 | tig0022515:+33224 | None:intergenic |
| ATCATCTTACCTCACAAATT+TGG | 0.209583 | tig0022515:-29297 | Msa1401400:CDS |
| TTTATTAATGTAAGAATGTA+TGG | 0.298850 | tig0022515:+28232 | None:intergenic |
| CGGCAGTACTGCATATTCTT+TGG | 0.311982 | tig0022515:-29207 | Msa1401400:CDS |
| GAGAGGAGAGAATAGGGAAT+AGG | 0.322323 | tig0022515:+34151 | None:intergenic |
| TACCAGAGCATGTGACTTTA+CGG | 0.322494 | tig0022515:-28710 | Msa1401400:CDS |
| AGAGGAGAGAATAGGGAATA+GGG | 0.324477 | tig0022515:+34152 | None:intergenic |
| CATATTGACCAAACCAAATT+CGG | 0.325935 | tig0022515:-31344 | Msa1401400:CDS |
| TTTATATAATGTGGTTTGTT+TGG | 0.329273 | tig0022515:+32261 | None:intergenic |
| GAGCATCTTGGAATCAGAAT+TGG | 0.335509 | tig0022515:+32159 | None:intergenic |
| GAAGAAGAGAGGAGAGAATA+GGG | 0.335725 | tig0022515:+34145 | None:intergenic |
| TATTCCAGATCTCTTTGAAA+TGG | 0.348895 | tig0022515:-31390 | Msa1401400:intron |
| ATATCAGTGGCCTAAAAGAT+AGG | 0.356411 | tig0022515:+28733 | None:intergenic |
| GCTTCTTCAATTACCAATCC+AGG | 0.364612 | tig0022515:-33198 | Msa1401400:CDS |
| GTGCCGTAATGTAATACTAA+TGG | 0.366497 | tig0022515:+29418 | None:intergenic |
| GATAGGGAATGTGGGCAAAT+TGG | 0.368637 | tig0022515:+28750 | None:intergenic |
| AGCATCTTGGAATCAGAATT+GGG | 0.369523 | tig0022515:+32160 | None:intergenic |
| ACGTGTCCAGGTCGATCTTC+TGG | 0.371257 | tig0022515:-30868 | Msa1401400:CDS |
| TGCCGTAATGTAATACTAAT+GGG | 0.375757 | tig0022515:+29419 | None:intergenic |
| TTCCTTCAGCAACTTTCCTA+AGG | 0.383595 | tig0022515:+33001 | None:intergenic |
| AACTGAATCCGAATTTGGTT+TGG | 0.384384 | tig0022515:+31336 | None:intergenic |
| TCCTCTCTTCTTCCATTCCA+TGG | 0.386585 | tig0022515:-34135 | Msa1401400:exon |
| AGAACGTAAGAGAGAGTAGT+AGG | 0.395392 | tig0022515:-34262 | Msa1401400:five_prime_UTR |
| TCTTCAAATCTGCAGGTTCC+GGG | 0.402559 | tig0022515:-28786 | Msa1401400:intron |
| CCCTCCCACACAGAAAGAAT+TGG | 0.405442 | tig0022515:-34212 | Msa1401400:five_prime_UTR |
| TTTGTTCCCATGACGTCCTT+AGG | 0.405594 | tig0022515:-32192 | Msa1401400:CDS |
| CCTAAAGAAAAGGGGACAAT+AGG | 0.406636 | tig0022515:+29607 | None:intergenic |
| GGAAGAAGAGAGGAGAGAAT+AGG | 0.414261 | tig0022515:+34144 | None:intergenic |
| GTTGACCTTGTGATAACTCT+TGG | 0.415690 | tig0022515:-30402 | Msa1401400:CDS |
| GCATTCATGAGGGTCTTCAT+TGG | 0.415841 | tig0022515:-28530 | Msa1401400:CDS |
| GAGGAGATGGCACTGTCCTA+TGG | 0.419569 | tig0022515:-30380 | Msa1401400:CDS |
| TCCAAGAGACCCTAAAGAAA+AGG | 0.423735 | tig0022515:+29597 | None:intergenic |
| AAATACCTTTCTGAGCATCT+TGG | 0.428311 | tig0022515:+32147 | None:intergenic |
| AAAATCATGCCTTGAGCATC+GGG | 0.428344 | tig0022515:-32317 | Msa1401400:CDS |
| ACCAGAGCATGTGACTTTAC+GGG | 0.430125 | tig0022515:-28709 | Msa1401400:CDS |
| CCAAGAGACCCTAAAGAAAA+GGG | 0.433750 | tig0022515:+29598 | None:intergenic |
| ATTCCAGATCTCTTTGAAAT+GGG | 0.437686 | tig0022515:-31389 | Msa1401400:intron |
| CCACACAGAAAGAATTGGTT+TGG | 0.440085 | tig0022515:-34207 | Msa1401400:five_prime_UTR |
| TATATAAAGTTGAAGCTAAC+GGG | 0.441430 | tig0022515:-32246 | Msa1401400:CDS |
| AGAGAATAGGGAATAGGGAA+TGG | 0.443889 | tig0022515:+34157 | None:intergenic |
| TCTGCATGGGCGTCATTTGA+TGG | 0.444185 | tig0022515:-28660 | Msa1401400:CDS |
| ATATAATGTGGTTTGTTTGG+CGG | 0.445641 | tig0022515:+32264 | None:intergenic |
| CTCATATTTACGTTTCCATT+CGG | 0.448735 | tig0022515:+32954 | None:intergenic |
| TTTGGCAGCTGGAGGATCAA+TGG | 0.451281 | tig0022515:-29189 | Msa1401400:CDS |
| CCATGACAAGCCGTAGGAAC+AGG | 0.452096 | tig0022515:+28579 | None:intergenic |
| GAATTGGTTTGGTATTTAGT+TGG | 0.454196 | tig0022515:-34196 | Msa1401400:five_prime_UTR |
| GAGAATAGGGAATAGGGAAT+GGG | 0.458573 | tig0022515:+34158 | None:intergenic |
| GGCCCTTTAAAATTGATTCA+AGG | 0.464517 | tig0022515:+29441 | None:intergenic |
| TTTGTGAAGATATACGAAAC+GGG | 0.469973 | tig0022515:-28404 | Msa1401400:three_prime_UTR |
| GCCCCATTAGTATTACATTA+CGG | 0.471359 | tig0022515:-29421 | Msa1401400:CDS |
| TAGCCGTCGCAAAGACCCTT+AGG | 0.472485 | tig0022515:-33017 | Msa1401400:CDS |
| TCAATATGAGCACCGTCTGT+GGG | 0.476528 | tig0022515:+31359 | None:intergenic |
| GAAAATCATGCCTTGAGCAT+CGG | 0.477900 | tig0022515:-32318 | Msa1401400:CDS |
| GCGAGATTGTCATGCTTCAC+GGG | 0.478288 | tig0022515:+28476 | None:intergenic |
| GGCACCCTGGCCTGTTCCTA+CGG | 0.479828 | tig0022515:-28589 | Msa1401400:CDS |
| AGCTTCAACTTTATATAATG+TGG | 0.480008 | tig0022515:+32252 | None:intergenic |
| TTATTGGCAGAAACTATACT+TGG | 0.480248 | tig0022515:-28441 | Msa1401400:three_prime_UTR |
| ACTGCATATTCTTTGGCAGC+TGG | 0.480334 | tig0022515:-29200 | Msa1401400:CDS |
| ACCCGTAAAGTCACATGCTC+TGG | 0.486419 | tig0022515:+28708 | None:intergenic |
| TCCTTCAGCAACTTTCCTAA+GGG | 0.493250 | tig0022515:+33002 | None:intergenic |
| AGCGAGATTGTCATGCTTCA+CGG | 0.498575 | tig0022515:+28475 | None:intergenic |
| GTCACACGTGTGCAAGGGGA+TGG | 0.499730 | tig0022515:-29251 | Msa1401400:CDS |
| AATTGGGGTTTCCATTCCTA+AGG | 0.501829 | tig0022515:+32176 | None:intergenic |
| TCCTTTGTCACACGTGTGCA+AGG | 0.504294 | tig0022515:-29257 | Msa1401400:CDS |
| ATATGTGGAACCACGTGTCC+AGG | 0.505262 | tig0022515:-30880 | Msa1401400:CDS |
| TTCTGTGTGCTGAAATGATT+AGG | 0.505327 | tig0022515:-31309 | Msa1401400:intron |
| GTCAATATGAGCACCGTCTG+TGG | 0.508326 | tig0022515:+31358 | None:intergenic |
| CTGCAAACCAATGCATCTCC+TGG | 0.509619 | tig0022515:+28615 | None:intergenic |
| TCCCATGACGTCCTTAGGAA+TGG | 0.510150 | tig0022515:-32187 | Msa1401400:CDS |
| CTCAAGCTGAGGCTGCCGAA+TGG | 0.510339 | tig0022515:-32969 | Msa1401400:CDS |
| GTGACGTCGCAGGCTGAGAA+TGG | 0.510604 | tig0022515:-33266 | Msa1401400:CDS |
| CGTCATTTGATGGCAAAGAC+AGG | 0.513709 | tig0022515:-28650 | Msa1401400:CDS |
| TGGTTTGCAGCATGGCACCC+TGG | 0.513901 | tig0022515:-28602 | Msa1401400:CDS |
| ATTCAGAGAACTCTATAAGA+TGG | 0.515452 | tig0022515:+33165 | None:intergenic |
| AGCAGAGCGCAGTAGTAAGC+AGG | 0.517230 | tig0022515:-31574 | Msa1401400:intron |
| ATGGAAACGTAAATATGAGT+TGG | 0.518720 | tig0022515:-32950 | Msa1401400:CDS |
| AATATGAGTTGGAGCGGACA+CGG | 0.519631 | tig0022515:-32939 | Msa1401400:CDS |
| AGGATCAATGGTCCATCCTC+AGG | 0.522080 | tig0022515:-29177 | Msa1401400:intron |
| TAAGAAACTACAAGTATATG+TGG | 0.523520 | tig0022515:-30895 | Msa1401400:CDS |
| ATTTGTGAAGATATACGAAA+CGG | 0.525626 | tig0022515:-28405 | Msa1401400:three_prime_UTR |
| GCAGATCCTCTGCTATTGAA+TGG | 0.526265 | tig0022515:+28678 | None:intergenic |
| GTTAGCACCAGGAGATGCAT+TGG | 0.526664 | tig0022515:-28622 | Msa1401400:CDS |
| AAACTTCAATGGTGCTGCAA+AGG | 0.526729 | tig0022515:-31657 | Msa1401400:CDS |
| AAGGGGACAATAGGAGGCAC+TGG | 0.531100 | tig0022515:+29616 | None:intergenic |
| GTGATAACTCTTGGAGGAGA+TGG | 0.532119 | tig0022515:-30393 | Msa1401400:CDS |
| TTCCATTCCTAAGGACGTCA+TGG | 0.534502 | tig0022515:+32185 | None:intergenic |
| ACAAGCCGTAGGAACAGGCC+AGG | 0.537381 | tig0022515:+28584 | None:intergenic |
| CCTGTTCCTACGGCTTGTCA+TGG | 0.541901 | tig0022515:-28579 | Msa1401400:CDS |
| GACCTTGTGATAACTCTTGG+AGG | 0.543147 | tig0022515:-30399 | Msa1401400:CDS |
| AGGAGATGGCACTGTCCTAT+GGG | 0.543589 | tig0022515:-30379 | Msa1401400:intron |
| AGATGCATTGGTTTGCAGCA+TGG | 0.544167 | tig0022515:-28610 | Msa1401400:CDS |
| ATTCTTTCTGTGTGGGAGGG+AGG | 0.545795 | tig0022515:+34215 | None:intergenic |
| GGCCTAAAAGATAGGGAATG+TGG | 0.546385 | tig0022515:+28741 | None:intergenic |
| AGTCTGAAGAATGTTATTCA+AGG | 0.548385 | tig0022515:-32222 | Msa1401400:CDS |
| GAAGAATGTTATTCAAGGAA+TGG | 0.548576 | tig0022515:-32217 | Msa1401400:CDS |
| ACCAATTCTTTCTGTGTGGG+AGG | 0.552495 | tig0022515:+34211 | None:intergenic |
| TTATCATTCTCAGATGGTTG+AGG | 0.555430 | tig0022515:-30923 | Msa1401400:intron |
| TATCAGTGGCCTAAAAGATA+GGG | 0.556872 | tig0022515:+28734 | None:intergenic |
| TCCATTCCTAAGGACGTCAT+GGG | 0.556880 | tig0022515:+32186 | None:intergenic |
| AAAGAAAAGGGGACAATAGG+AGG | 0.560184 | tig0022515:+29610 | None:intergenic |
| ACTTTAACTTTGTAGAAACA+TGG | 0.561034 | tig0022515:-30833 | Msa1401400:CDS |
| CAAGATCAGCCCGATGCTCA+AGG | 0.561911 | tig0022515:+32308 | None:intergenic |
| CTTCTTCAATTACCAATCCA+GGG | 0.562191 | tig0022515:-33197 | Msa1401400:CDS |
| TGTGAGGAGGTGCCATGGAA+TGG | 0.566364 | tig0022515:+34123 | None:intergenic |
| GCCATGGAATGGAAGAAGAG+AGG | 0.566431 | tig0022515:+34134 | None:intergenic |
| CAAACCAATTCTTTCTGTGT+GGG | 0.567740 | tig0022515:+34208 | None:intergenic |
| TTCAAGAAAGTACCTGAGGA+TGG | 0.571238 | tig0022515:+29165 | None:intergenic |
| CCTTTGTCACACGTGTGCAA+GGG | 0.572743 | tig0022515:-29256 | Msa1401400:CDS |
| GCATATTCTTTGGCAGCTGG+AGG | 0.576402 | tig0022515:-29197 | Msa1401400:CDS |
| AAATTCGAGTGTGACGTCGC+AGG | 0.576930 | tig0022515:-33276 | Msa1401400:CDS |
| CCAATTCTTTCTGTGTGGGA+GGG | 0.577309 | tig0022515:+34212 | None:intergenic |
| CAAAGAATATGCAGTACTGC+CGG | 0.577407 | tig0022515:+29208 | None:intergenic |
| CCCTTGCACACGTGTGACAA+AGG | 0.578224 | tig0022515:+29256 | None:intergenic |
| GTATAACATGACATATCAAA+CGG | 0.579333 | tig0022515:+29396 | None:intergenic |
| TTATATAAAGTTGAAGCTAA+CGG | 0.582757 | tig0022515:-32247 | Msa1401400:CDS |
| TGATTCCAAGATGCTCAGAA+AGG | 0.584205 | tig0022515:-32152 | Msa1401400:intron |
| CTTCTTGCACAGCATTCATG+AGG | 0.584282 | tig0022515:-28541 | Msa1401400:CDS |
| CTTTGTCACACGTGTGCAAG+GGG | 0.585437 | tig0022515:-29255 | Msa1401400:CDS |
| GACAGGAAACAGTTAGCACC+AGG | 0.587740 | tig0022515:-28633 | Msa1401400:CDS |
| CCAAACCAATTCTTTCTGTG+TGG | 0.590655 | tig0022515:+34207 | None:intergenic |
| TAAGATGGTCATCAGAACCC+TGG | 0.595252 | tig0022515:+33180 | None:intergenic |
| TTTCCTAAGGGTCTTTGCGA+CGG | 0.596647 | tig0022515:+33014 | None:intergenic |
| TTTGTAGAAACATGGAGTGA+TGG | 0.596829 | tig0022515:-30825 | Msa1401400:intron |
| AAAAGCTGCTGCTCAAGCTG+AGG | 0.596980 | tig0022515:-32980 | Msa1401400:CDS |
| CAGACAGCATCTATGTTCAA+AGG | 0.597231 | tig0022515:-29640 | Msa1401400:CDS |
| TGGTCATCAGAACCCTGGAT+TGG | 0.600554 | tig0022515:+33185 | None:intergenic |
| ACTCCTCCAGAAGATCGACC+TGG | 0.600736 | tig0022515:+30862 | None:intergenic |
| GCCTAAAAGATAGGGAATGT+GGG | 0.606323 | tig0022515:+28742 | None:intergenic |
| CTTACTACTGCGCTCTGCTG+TGG | 0.613186 | tig0022515:+31578 | None:intergenic |
| ACCCTTAGGAAAGTTGCTGA+AGG | 0.613952 | tig0022515:-33003 | Msa1401400:CDS |
| CAAATACCATTCAATAGCAG+AGG | 0.614625 | tig0022515:-28684 | Msa1401400:CDS |
| AGTAGGAGTAGTATATTGCA+AGG | 0.618305 | tig0022515:-34245 | Msa1401400:five_prime_UTR |
| AACGTAAATATGAGTTGGAG+CGG | 0.620635 | tig0022515:-32945 | Msa1401400:CDS |
| CAAGCCGTAGGAACAGGCCA+GGG | 0.621041 | tig0022515:+28585 | None:intergenic |
| TCAATAGCAGAGGATCTGCA+TGG | 0.622946 | tig0022515:-28674 | Msa1401400:CDS |
| GTGGGAGAATTGAGCTTGTG+AGG | 0.625456 | tig0022515:+34107 | None:intergenic |
| CTCCTCCAAGAGTTATCACA+AGG | 0.626125 | tig0022515:+30397 | None:intergenic |
| TTCTTGCACAGCATTCATGA+GGG | 0.628470 | tig0022515:-28540 | Msa1401400:CDS |
| GCATCTTGGAATCAGAATTG+GGG | 0.632152 | tig0022515:+32161 | None:intergenic |
| CAATAGCAGAGGATCTGCAT+GGG | 0.633440 | tig0022515:-28673 | Msa1401400:CDS |
| AGTAACATTCCAAATTTGTG+AGG | 0.633691 | tig0022515:+29288 | None:intergenic |
| GAGCTTGTGAGGAGGTGCCA+TGG | 0.634948 | tig0022515:+34118 | None:intergenic |
| CAATATGAGCACCGTCTGTG+GGG | 0.637061 | tig0022515:+31360 | None:intergenic |
| TCACAAGCTCAATTCTCCCA+CGG | 0.637477 | tig0022515:-34105 | Msa1401400:intron |
| ACATGCTCTGGTAATATCAG+TGG | 0.641766 | tig0022515:+28720 | None:intergenic |
| ATCTATACTTGTTCTAAACG+AGG | 0.643745 | tig0022515:-29339 | Msa1401400:CDS |
| TTCTCACAAGACAAAGACAA+AGG | 0.644586 | tig0022515:+34299 | None:intergenic |
| TGTCCAGGTCGATCTTCTGG+AGG | 0.648734 | tig0022515:-30865 | Msa1401400:CDS |
| AACGAGGTTACTATTGATCG+TGG | 0.656515 | tig0022515:-29323 | Msa1401400:CDS |
| AATATGAGCACCGTCTGTGG+GGG | 0.658209 | tig0022515:+31361 | None:intergenic |
| GAATCTCCATGACAAGCCGT+AGG | 0.661516 | tig0022515:+28573 | None:intergenic |
| GCCGTAATGTAATACTAATG+GGG | 0.664160 | tig0022515:+29420 | None:intergenic |
| AGAAGATCGACCTGGACACG+TGG | 0.664253 | tig0022515:+30870 | None:intergenic |
| CAAGAGACCCTAAAGAAAAG+GGG | 0.665932 | tig0022515:+29599 | None:intergenic |
| CGAGATTGTCATGCTTCACG+GGG | 0.669838 | tig0022515:+28477 | None:intergenic |
| TTGTGAAGATATACGAAACG+GGG | 0.673670 | tig0022515:-28403 | Msa1401400:three_prime_UTR |
| ATTGGCGTAAACAAAATACC+CGG | 0.685864 | tig0022515:+28768 | None:intergenic |
| GGAGAATTGAGCTTGTGAGG+AGG | 0.732507 | tig0022515:+34110 | None:intergenic |
| AATCTGCAGATTGAAAACAA+AGG | 0.735260 | tig0022515:-32916 | Msa1401400:intron |
| TGTGAAGATATACGAAACGG+GGG | 0.739692 | tig0022515:-28402 | Msa1401400:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTACAACAAAA+TGG | - | tig0022515:28633-28652 | Msa1401400:CDS | 10.0% |
| !!! | TTTTTTAATTACAACAAAAT+GGG | - | tig0022515:28634-28653 | Msa1401400:CDS | 10.0% |
| !!! | AAATTTTGAAAAATTGAATT+TGG | + | tig0022515:28782-28801 | None:intergenic | 10.0% |
| !!! | TTTTCAAAATTTGAAAATAA+TGG | - | tig0022515:28790-28809 | Msa1401400:intron | 10.0% |
| !! | TTTCAAAATTTGAAAATAAT+GGG | - | tig0022515:28791-28810 | Msa1401400:intron | 10.0% |
| !! | ATTACTATATAATATTGTAT+CGG | + | tig0022515:30676-30695 | None:intergenic | 10.0% |
| !! | AATCATCATAAAATTAAAAA+AGG | + | tig0022515:32709-32728 | None:intergenic | 10.0% |
| !! | AAATGATTGAAATGAATAAA+CGG | + | tig0022515:29784-29803 | None:intergenic | 15.0% |
| !! | ATTAAAGATAAATTGCTTAT+AGG | - | tig0022515:29846-29865 | Msa1401400:intron | 15.0% |
| !! | AAAATAAACAAAATAGTGAA+TGG | - | tig0022515:31938-31957 | Msa1401400:intron | 15.0% |
| !!! | TTTTAAAATATCCTATTGAA+TGG | - | tig0022515:32199-32218 | Msa1401400:CDS | 15.0% |
| !!! | TAATTTTGTCATCTAAAATA+TGG | - | tig0022515:32251-32270 | Msa1401400:CDS | 15.0% |
| !! | TAAAAAAAAATATACGTCTA+AGG | + | tig0022515:33605-33624 | None:intergenic | 15.0% |
| !!! | AATTTTAAGTTACAATATCA+CGG | + | tig0022515:34284-34303 | None:intergenic | 15.0% |
| !! | TTTATTAATGTAAGAATGTA+TGG | + | tig0022515:34314-34333 | None:intergenic | 15.0% |
| !!! | TTATACAACTATTTCTTGTT+AGG | - | tig0022515:28517-28536 | Msa1401400:CDS | 20.0% |
| !!! | TATACAACTATTTCTTGTTA+GGG | - | tig0022515:28518-28537 | Msa1401400:CDS | 20.0% |
| !! | TATGTTAGTATTAGTTCATT+AGG | - | tig0022515:29197-29216 | Msa1401400:CDS | 20.0% |
| !! | ATTAAAAAGAAAAAATCGAC+CGG | + | tig0022515:29756-29775 | None:intergenic | 20.0% |
| !! | AAGCAATTTATCTTTAATAC+AGG | + | tig0022515:29844-29863 | None:intergenic | 20.0% |
| !!! | GAAGAAATGAAAGATTTTAA+CGG | + | tig0022515:29989-30008 | None:intergenic | 20.0% |
| !! | TTGAAAAATTCAACAGAAAA+AGG | + | tig0022515:30057-30076 | None:intergenic | 20.0% |
| !!! | TTTATATAATGTGGTTTGTT+TGG | + | tig0022515:30285-30304 | None:intergenic | 20.0% |
| !! | TTATATAAAGTTGAAGCTAA+CGG | - | tig0022515:30296-30315 | Msa1401400:intron | 20.0% |
| !!! | AATATTTAAGAGTACCAATA+GGG | + | tig0022515:30481-30500 | None:intergenic | 20.0% |
| !!! | AAATATTTAAGAGTACCAAT+AGG | + | tig0022515:30482-30501 | None:intergenic | 20.0% |
| !! | TTATACTAAAGACAAATACT+TGG | + | tig0022515:31523-31542 | None:intergenic | 20.0% |
| !! | AAAAAATACCAATTAACCAA+GGG | + | tig0022515:31598-31617 | None:intergenic | 20.0% |
| !! | AAAAAAATACCAATTAACCA+AGG | + | tig0022515:31599-31618 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATCATTCTCAGA+TGG | - | tig0022515:31614-31633 | Msa1401400:CDS | 20.0% |
| !! | CAAATATTTGATGTCATAAA+AGG | - | tig0022515:31749-31768 | Msa1401400:intron | 20.0% |
| !! | CTAAAATATGGTTAAAAGAA+AGG | - | tig0022515:32263-32282 | Msa1401400:CDS | 20.0% |
| !! | TATGCATTGAGATAAATATA+TGG | - | tig0022515:32434-32453 | Msa1401400:intron | 20.0% |
| !! | AGATAAATATATGGTAGATT+AGG | - | tig0022515:32443-32462 | Msa1401400:intron | 20.0% |
| !! | AATTATGTATATGCATGATT+CGG | + | tig0022515:32487-32506 | None:intergenic | 20.0% |
| !!! | GAAGTAACATTTTTAATGTT+GGG | - | tig0022515:32676-32695 | Msa1401400:intron | 20.0% |
| !!! | TTTAATTTTATGATGATTGC+TGG | - | tig0022515:32711-32730 | Msa1401400:intron | 20.0% |
| !! | ATATCACAAAGCAATATATT+AGG | + | tig0022515:32853-32872 | None:intergenic | 20.0% |
| !! | ATATCTGTTTACATTTCTAT+TGG | - | tig0022515:33033-33052 | Msa1401400:intron | 20.0% |
| !!! | TTAATTTTATCTACAACATC+CGG | - | tig0022515:33316-33335 | Msa1401400:intron | 20.0% |
| !!! | TTACTCATAAGATTTTAACA+TGG | - | tig0022515:33622-33641 | Msa1401400:intron | 20.0% |
| !! | TCCATAACTTTGACTTTAAT+TGG | - | tig0022515:28966-28985 | Msa1401400:intron | 25.0% |
| !! | CCATAACTTTGACTTTAATT+GGG | - | tig0022515:28967-28986 | Msa1401400:intron | 25.0% |
| ! | AAAAAAATCAAGTGTTCTGT+GGG | - | tig0022515:29068-29087 | Msa1401400:intron | 25.0% |
| ! | AGCTTCAACTTTATATAATG+TGG | + | tig0022515:30294-30313 | None:intergenic | 25.0% |
| ! | TATATAAAGTTGAAGCTAAC+GGG | - | tig0022515:30297-30316 | Msa1401400:intron | 25.0% |
| !! | TAACATATTTTGCTTCGATA+AGG | + | tig0022515:30430-30449 | None:intergenic | 25.0% |
| !!! | CGATTGTTTTTAATGAGATA+AGG | + | tig0022515:30620-30639 | None:intergenic | 25.0% |
| ! | AATATAGCTAATTACCATGA+GGG | + | tig0022515:30787-30806 | None:intergenic | 25.0% |
| ! | AAATATAGCTAATTACCATG+AGG | + | tig0022515:30788-30807 | None:intergenic | 25.0% |
| !! | AGGTATCTCTTTTATTATTG+AGG | - | tig0022515:30989-31008 | Msa1401400:intron | 25.0% |
| !! | TATCTCTTTTATTATTGAGG+AGG | - | tig0022515:30992-31011 | Msa1401400:intron | 25.0% |
| !!! | ATTTTAACTGAATCCGAATT+TGG | + | tig0022515:31215-31234 | None:intergenic | 25.0% |
| ! | AAAGGAATAAAACTTGACTT+TGG | + | tig0022515:31301-31320 | None:intergenic | 25.0% |
| ! | AGCATCATAACATAAGTAAA+AGG | + | tig0022515:31319-31338 | None:intergenic | 25.0% |
| !! | AAATAATGGAAGATGTGTAA+TGG | - | tig0022515:31363-31382 | Msa1401400:CDS | 25.0% |
| ! | TAAGAAACTACAAGTATATG+TGG | - | tig0022515:31648-31667 | Msa1401400:CDS | 25.0% |
| !! | ACTTTAACTTTGTAGAAACA+TGG | - | tig0022515:31710-31729 | Msa1401400:intron | 25.0% |
| !!! | TTTTTCTAGTGCTATATTTG+TGG | - | tig0022515:31860-31879 | Msa1401400:intron | 25.0% |
| ! | AGTAAACAGTAAACTTTCTT+TGG | + | tig0022515:31964-31983 | None:intergenic | 25.0% |
| ! | TCATTATGTTAAAACAGACA+AGG | + | tig0022515:31987-32006 | None:intergenic | 25.0% |
| ! | AGTTAACTATCTGATTATAG+TGG | - | tig0022515:32049-32068 | Msa1401400:intron | 25.0% |
| ! | ATGCACATAAACAATTACAA+CGG | + | tig0022515:32075-32094 | None:intergenic | 25.0% |
| !!! | CAATTTTTTGCTTGTAGATA+AGG | - | tig0022515:32095-32114 | Msa1401400:intron | 25.0% |
| !! | TTGTAGATAAGGAAATTTTG+AGG | - | tig0022515:32106-32125 | Msa1401400:intron | 25.0% |
| ! | TAAAAAGAGTTAGTTACTTG+TGG | + | tig0022515:32301-32320 | None:intergenic | 25.0% |
| ! | GAAATGTACATAACCTTAAA+AGG | - | tig0022515:32633-32652 | Msa1401400:intron | 25.0% |
| !! | TCATATCAAATGTCCTTTTA+AGG | + | tig0022515:32649-32668 | None:intergenic | 25.0% |
| !! | GGAAGTAACATTTTTAATGT+TGG | - | tig0022515:32675-32694 | Msa1401400:intron | 25.0% |
| ! | GAGTATTCATTGTTAAACTT+TGG | - | tig0022515:32779-32798 | Msa1401400:intron | 25.0% |
| ! | TTTACTTTACATTACTCAAC+CGG | - | tig0022515:32823-32842 | Msa1401400:intron | 25.0% |
| ! | AAGCAATATATTAGGATAAC+CGG | + | tig0022515:32845-32864 | None:intergenic | 25.0% |
| !! | TTGTAATTTTCACTATCTGA+AGG | + | tig0022515:33076-33095 | None:intergenic | 25.0% |
| !! | TGCCTTGAATCAATTTTAAA+GGG | - | tig0022515:33100-33119 | Msa1401400:intron | 25.0% |
| ! | GTATAACATGACATATCAAA+CGG | + | tig0022515:33150-33169 | None:intergenic | 25.0% |
| !!! | GTATCATTACAAGTTTTTTC+TGG | - | tig0022515:33512-33531 | Msa1401400:intron | 25.0% |
| !!! | AGATTTTAACATGGAAATTC+TGG | - | tig0022515:33631-33650 | Msa1401400:intron | 25.0% |
| ! | ATTATGACACTAAAACTGTA+AGG | + | tig0022515:33684-33703 | None:intergenic | 25.0% |
| ! | ATTTGTGAAGATATACGAAA+CGG | - | tig0022515:34138-34157 | Msa1401400:exon | 25.0% |
| !! | GAATTGGTTTGGTATTTAGT+TGG | - | tig0022515:28347-28366 | Msa1401400:three_prime_UTR | 30.0% |
| GAATTAAGAAGAATTACCGT+GGG | + | tig0022515:28457-28476 | None:intergenic | 30.0% | |
| AGAATTAAGAAGAATTACCG+TGG | + | tig0022515:28458-28477 | None:intergenic | 30.0% | |
| ATTATGTTAATTACCCTGCT+AGG | - | tig0022515:28559-28578 | Msa1401400:CDS | 30.0% | |
| TTAATTACAACAAAATGGGC+AGG | - | tig0022515:28638-28657 | Msa1401400:CDS | 30.0% | |
| CAAAAGCTAATAAGCAGTTA+GGG | + | tig0022515:28701-28720 | None:intergenic | 30.0% | |
| ACAAAAGCTAATAAGCAGTT+AGG | + | tig0022515:28702-28721 | None:intergenic | 30.0% | |
| !! | TTAGCTTTTGTTAATTACCC+TGG | - | tig0022515:28711-28730 | Msa1401400:CDS | 30.0% |
| CCCAATTAAAGTCAAAGTTA+TGG | + | tig0022515:28970-28989 | None:intergenic | 30.0% | |
| CAAAAAAATCAAGTGTTCTG+TGG | - | tig0022515:29067-29086 | Msa1401400:intron | 30.0% | |
| TAGGTTACAAGTTTGTATCT+TGG | - | tig0022515:29216-29235 | Msa1401400:CDS | 30.0% | |
| ATTCAGAGAACTCTATAAGA+TGG | + | tig0022515:29381-29400 | None:intergenic | 30.0% | |
| AGGAGTTTCAAGACAAAATA+AGG | + | tig0022515:29501-29520 | None:intergenic | 30.0% | |
| CTCATATTTACGTTTCCATT+CGG | + | tig0022515:29592-29611 | None:intergenic | 30.0% | |
| ATGGAAACGTAAATATGAGT+TGG | - | tig0022515:29593-29612 | Msa1401400:CDS | 30.0% | |
| AATCTGCAGATTGAAAACAA+AGG | - | tig0022515:29627-29646 | Msa1401400:CDS | 30.0% | |
| TACAAAATCAATCATCGAAG+TGG | + | tig0022515:29673-29692 | None:intergenic | 30.0% | |
| !! | GCTATTAAATTGTCGATTTC+CGG | - | tig0022515:29734-29753 | Msa1401400:intron | 30.0% |
| ! | ATCGTCTGAAAACGATTTTA+TGG | - | tig0022515:29929-29948 | Msa1401400:intron | 30.0% |
| ! | TTGTCACGATCTTATCTTTT+AGG | - | tig0022515:30091-30110 | Msa1401400:intron | 30.0% |
| TAGATGGTAGATCAATATTC+AGG | + | tig0022515:30128-30147 | None:intergenic | 30.0% | |
| AAACACATTAGCAGTTTAGA+TGG | + | tig0022515:30144-30163 | None:intergenic | 30.0% | |
| AGTTTATAATTTCTACTCCC+TGG | - | tig0022515:30187-30206 | Msa1401400:intron | 30.0% | |
| !! | ATATAATGTGGTTTGTTTGG+CGG | + | tig0022515:30282-30301 | None:intergenic | 30.0% |
| AGTCTGAAGAATGTTATTCA+AGG | - | tig0022515:30321-30340 | Msa1401400:intron | 30.0% | |
| GAAGAATGTTATTCAAGGAA+TGG | - | tig0022515:30326-30345 | Msa1401400:intron | 30.0% | |
| TGCGACAAACATCAATAAAA+GGG | + | tig0022515:30541-30560 | None:intergenic | 30.0% | |
| ATGCGACAAACATCAATAAA+AGG | + | tig0022515:30542-30561 | None:intergenic | 30.0% | |
| AAACAATCGAGAGATATAAG+TGG | - | tig0022515:30631-30650 | Msa1401400:intron | 30.0% | |
| ! | AGGCTTCTTTTAAACTTCAA+TGG | - | tig0022515:30875-30894 | Msa1401400:CDS | 30.0% |
| GAAAATATAAAGATAGCACG+AGG | + | tig0022515:31086-31105 | None:intergenic | 30.0% | |
| ! | TATTCCAGATCTCTTTGAAA+TGG | - | tig0022515:31153-31172 | Msa1401400:intron | 30.0% |
| !! | ATTCCAGATCTCTTTGAAAT+GGG | - | tig0022515:31154-31173 | Msa1401400:intron | 30.0% |
| CATATTGACCAAACCAAATT+CGG | - | tig0022515:31199-31218 | Msa1401400:intron | 30.0% | |
| !! | ATTATTTTGCGAAGAGTCTA+AGG | + | tig0022515:31350-31369 | None:intergenic | 30.0% |
| TTAGACTCTTCGCAAAATAA+TGG | - | tig0022515:31349-31368 | Msa1401400:CDS | 30.0% | |
| AAATACTTGGAAGGATACAA+AGG | + | tig0022515:31510-31529 | None:intergenic | 30.0% | |
| ACTAAAGACAAATACTTGGA+AGG | + | tig0022515:31519-31538 | None:intergenic | 30.0% | |
| ! | ACTAGAAAAAAAAGCTCTAG+TGG | + | tig0022515:31850-31869 | None:intergenic | 30.0% |
| ATAGAGTATATATCGACACA+AGG | + | tig0022515:31904-31923 | None:intergenic | 30.0% | |
| AAACAATTTCACATACCCAT+AGG | + | tig0022515:32182-32201 | None:intergenic | 30.0% | |
| TTAGACTATTGCCATTCAAT+AGG | + | tig0022515:32213-32232 | None:intergenic | 30.0% | |
| TAGATTAGGAACCATGTTAA+AGG | - | tig0022515:32457-32476 | Msa1401400:intron | 30.0% | |
| CTGAAAACTATTTGATTCCT+GGG | - | tig0022515:32550-32569 | Msa1401400:intron | 30.0% | |
| AAAGGACATTTGATATGAGA+TGG | - | tig0022515:32651-32670 | Msa1401400:intron | 30.0% | |
| !!! | AGATATATTTTGACCAGAGA+TGG | + | tig0022515:32752-32771 | None:intergenic | 30.0% |
| GGTCAAAATATATCTGTCTT+TGG | - | tig0022515:32757-32776 | Msa1401400:intron | 30.0% | |
| ATACAATTATGCGAAGTTGA+AGG | + | tig0022515:32992-33011 | None:intergenic | 30.0% | |
| ! | AATTTTCACTATCTGAAGGA+AGG | + | tig0022515:33072-33091 | None:intergenic | 30.0% |
| ! | GTGCCTTGAATCAATTTTAA+AGG | - | tig0022515:33099-33118 | Msa1401400:intron | 30.0% |
| TGCCGTAATGTAATACTAAT+GGG | + | tig0022515:33127-33146 | None:intergenic | 30.0% | |
| ! | ATCTATACTTGTTCTAAACG+AGG | - | tig0022515:33204-33223 | Msa1401400:CDS | 30.0% |
| ATCATCTTACCTCACAAATT+TGG | - | tig0022515:33246-33265 | Msa1401400:CDS | 30.0% | |
| AGTAACATTCCAAATTTGTG+AGG | + | tig0022515:33258-33277 | None:intergenic | 30.0% | |
| !!! | TCGCTGTCTTTCTTTTTTAT+TGG | - | tig0022515:34086-34105 | Msa1401400:intron | 30.0% |
| TTATTGGCAGAAACTATACT+TGG | - | tig0022515:34102-34121 | Msa1401400:intron | 30.0% | |
| TTTGTGAAGATATACGAAAC+GGG | - | tig0022515:34139-34158 | Msa1401400:five_prime_UTR | 30.0% | |
| ! | TACATTTTCATCATCATCGA+TGG | + | tig0022515:34252-34271 | None:intergenic | 30.0% |
| TTCTCACAAGACAAAGACAA+AGG | + | tig0022515:28247-28266 | None:intergenic | 35.0% | |
| AGTAGGAGTAGTATATTGCA+AGG | - | tig0022515:28298-28317 | Msa1401400:three_prime_UTR | 35.0% | |
| CAAACCAATTCTTTCTGTGT+GGG | + | tig0022515:28338-28357 | None:intergenic | 35.0% | |
| AACACAGATAAATCCTAGCA+GGG | + | tig0022515:28575-28594 | None:intergenic | 35.0% | |
| AAACACAGATAAATCCTAGC+AGG | + | tig0022515:28576-28595 | None:intergenic | 35.0% | |
| CTAGGATTTATCTGTGTTTC+TGG | - | tig0022515:28577-28596 | Msa1401400:CDS | 35.0% | |
| ! | CTTTTGTTAATTACCCTGGT+AGG | - | tig0022515:28715-28734 | Msa1401400:CDS | 35.0% |
| AACACAGATAAATCCTACCA+GGG | + | tig0022515:28731-28750 | None:intergenic | 35.0% | |
| AAACACAGATAAATCCTACC+AGG | + | tig0022515:28732-28751 | None:intergenic | 35.0% | |
| GTAGGATTTATCTGTGTTTC+TGG | - | tig0022515:28733-28752 | Msa1401400:CDS | 35.0% | |
| TCATACCCTATAAGCAGTTA+GGG | + | tig0022515:28859-28878 | None:intergenic | 35.0% | |
| ATCATACCCTATAAGCAGTT+AGG | + | tig0022515:28860-28879 | None:intergenic | 35.0% | |
| ! | GGTTTTTCTGATTTCCTTCA+TGG | - | tig0022515:29237-29256 | Msa1401400:CDS | 35.0% |
| CTTCTTCAATTACCAATCCA+GGG | - | tig0022515:29346-29365 | Msa1401400:CDS | 35.0% | |
| ! | AACGTAAATATGAGTTGGAG+CGG | - | tig0022515:29598-29617 | Msa1401400:CDS | 35.0% |
| ATCGACAATTTAATAGCGAG+CGG | + | tig0022515:29731-29750 | None:intergenic | 35.0% | |
| TCCTGTAGTAAAAACATCCA+GGG | + | tig0022515:30207-30226 | None:intergenic | 35.0% | |
| TTCCTGTAGTAAAAACATCC+AGG | + | tig0022515:30208-30227 | None:intergenic | 35.0% | |
| AGCATCTTGGAATCAGAATT+GGG | + | tig0022515:30386-30405 | None:intergenic | 35.0% | |
| AAATACCTTTCTGAGCATCT+TGG | + | tig0022515:30399-30418 | None:intergenic | 35.0% | |
| ! | ATGATCAATTTTGTTGCAGC+AGG | - | tig0022515:30452-30471 | Msa1401400:intron | 35.0% |
| ! | TTTTCTCTGATGTACATGTG+TGG | - | tig0022515:30500-30519 | Msa1401400:intron | 35.0% |
| !!! | TGGATTAGTTTTTGGTAGGA+CGG | + | tig0022515:30762-30781 | None:intergenic | 35.0% |
| !!! | GGTATGGATTAGTTTTTGGT+AGG | + | tig0022515:30766-30785 | None:intergenic | 35.0% |
| !!! | TGAGGGTATGGATTAGTTTT+TGG | + | tig0022515:30770-30789 | None:intergenic | 35.0% |
| AAAACTAATCCATACCCTCA+TGG | - | tig0022515:30770-30789 | Msa1401400:intron | 35.0% | |
| TCAGGTACAGTAATGTGAAT+TGG | + | tig0022515:30840-30859 | None:intergenic | 35.0% | |
| TGTACCTGACTTATTTACTG+AGG | - | tig0022515:30851-30870 | Msa1401400:CDS | 35.0% | |
| !! | GACATTGTCTCTTTTGAAAG+AGG | - | tig0022515:30934-30953 | Msa1401400:intron | 35.0% |
| ! | ACGAGGACAAACTTTAAGAA+GGG | + | tig0022515:31069-31088 | None:intergenic | 35.0% |
| ACACATGTGTGTACAATAGA+AGG | + | tig0022515:31108-31127 | None:intergenic | 35.0% | |
| AACTGAATCCGAATTTGGTT+TGG | + | tig0022515:31210-31229 | None:intergenic | 35.0% | |
| TTCTGTGTGCTGAAATGATT+AGG | - | tig0022515:31234-31253 | Msa1401400:intron | 35.0% | |
| TTATCATTCTCAGATGGTTG+AGG | - | tig0022515:31620-31639 | Msa1401400:CDS | 35.0% | |
| TTTGTAGAAACATGGAGTGA+TGG | - | tig0022515:31718-31737 | Msa1401400:intron | 35.0% | |
| TGGCAATAGTCTAACTTTCT+AGG | - | tig0022515:32219-32238 | Msa1401400:CDS | 35.0% | |
| ! | ACAGTGGTTTGGATAAGTAA+CGG | + | tig0022515:32329-32348 | None:intergenic | 35.0% |
| ! | AAAAGTGTAACCTTCAACAG+TGG | + | tig0022515:32345-32364 | None:intergenic | 35.0% |
| TTCACAGTAAAACAGATCTG+CGG | + | tig0022515:32373-32392 | None:intergenic | 35.0% | |
| GCTGAAAACTATTTGATTCC+TGG | - | tig0022515:32549-32568 | Msa1401400:intron | 35.0% | |
| GTAAACTACTGTAGTAGACT+TGG | + | tig0022515:32808-32827 | None:intergenic | 35.0% | |
| ! | CTATTGTCCCCTTTTCTTTA+GGG | - | tig0022515:32937-32956 | Msa1401400:CDS | 35.0% |
| !! | GGCCCTTTAAAATTGATTCA+AGG | + | tig0022515:33105-33124 | None:intergenic | 35.0% |
| GCCCCATTAGTATTACATTA+CGG | - | tig0022515:33122-33141 | Msa1401400:intron | 35.0% | |
| GCCGTAATGTAATACTAATG+GGG | + | tig0022515:33126-33145 | None:intergenic | 35.0% | |
| GTGCCGTAATGTAATACTAA+TGG | + | tig0022515:33128-33147 | None:intergenic | 35.0% | |
| ACATGTGAACAGCAAAACAA+CGG | + | tig0022515:33541-33560 | None:intergenic | 35.0% | |
| !!! | GTTTTGCTGTTCACATGTTA+TGG | - | tig0022515:33543-33562 | Msa1401400:intron | 35.0% |
| TCTTTATGACCTTGTGTTAC+TGG | - | tig0022515:33573-33592 | Msa1401400:intron | 35.0% | |
| ATTGGCGTAAACAAAATACC+CGG | + | tig0022515:33778-33797 | None:intergenic | 35.0% | |
| TATCAGTGGCCTAAAAGATA+GGG | + | tig0022515:33812-33831 | None:intergenic | 35.0% | |
| ATATCAGTGGCCTAAAAGAT+AGG | + | tig0022515:33813-33832 | None:intergenic | 35.0% | |
| CAAATACCATTCAATAGCAG+AGG | - | tig0022515:33859-33878 | Msa1401400:intron | 35.0% | |
| TTGTGAAGATATACGAAACG+GGG | - | tig0022515:34140-34159 | Msa1401400:five_prime_UTR | 35.0% | |
| AGAACGTAAGAGAGAGTAGT+AGG | - | tig0022515:28281-28300 | Msa1401400:three_prime_UTR | 40.0% | |
| CCAAACCAATTCTTTCTGTG+TGG | + | tig0022515:28339-28358 | None:intergenic | 40.0% | |
| CCACACAGAAAGAATTGGTT+TGG | - | tig0022515:28336-28355 | Msa1401400:three_prime_UTR | 40.0% | |
| GAGAATAGGGAATAGGGAAT+GGG | + | tig0022515:28388-28407 | None:intergenic | 40.0% | |
| AGAGAATAGGGAATAGGGAA+TGG | + | tig0022515:28389-28408 | None:intergenic | 40.0% | |
| AGAGGAGAGAATAGGGAATA+GGG | + | tig0022515:28394-28413 | None:intergenic | 40.0% | |
| GAAGAAGAGAGGAGAGAATA+GGG | + | tig0022515:28401-28420 | None:intergenic | 40.0% | |
| TTGACTCCCTAACTGCTTAT+AGG | - | tig0022515:28850-28869 | Msa1401400:intron | 40.0% | |
| TGACTCCCTAACTGCTTATA+GGG | - | tig0022515:28851-28870 | Msa1401400:intron | 40.0% | |
| ATAGGGTATGATCACTCTGA+TGG | - | tig0022515:28868-28887 | Msa1401400:intron | 40.0% | |
| AGACCTTAGAGCATAGTCAA+AGG | + | tig0022515:28907-28926 | None:intergenic | 40.0% | |
| ! | CTTTTAGTGCCAATTTCCGT+GGG | - | tig0022515:28939-28958 | Msa1401400:intron | 40.0% |
| ! | CAAAGTTATGGACTATCCCA+CGG | + | tig0022515:28958-28977 | None:intergenic | 40.0% |
| TCTGATTTCCTTCATGGAAC+AGG | - | tig0022515:29243-29262 | Msa1401400:CDS | 40.0% | |
| CTGATTTCCTTCATGGAACA+GGG | - | tig0022515:29244-29263 | Msa1401400:CDS | 40.0% | |
| TGCACTGCTTTCTCAGAAAA+TGG | + | tig0022515:29322-29341 | None:intergenic | 40.0% | |
| GCTTCTTCAATTACCAATCC+AGG | - | tig0022515:29345-29364 | Msa1401400:CDS | 40.0% | |
| TCCTTCAGCAACTTTCCTAA+GGG | + | tig0022515:29544-29563 | None:intergenic | 40.0% | |
| TTCCTTCAGCAACTTTCCTA+AGG | + | tig0022515:29545-29564 | None:intergenic | 40.0% | |
| GCGAGAAGGTCAGAAAAAAA+TGG | + | tig0022515:30035-30054 | None:intergenic | 40.0% | |
| TTCAACAGAAAAAGGCGAGA+AGG | + | tig0022515:30049-30068 | None:intergenic | 40.0% | |
| !! | TCCCTGGATGTTTTTACTAC+AGG | - | tig0022515:30203-30222 | Msa1401400:intron | 40.0% |
| GAAAATCATGCCTTGAGCAT+CGG | - | tig0022515:30225-30244 | Msa1401400:intron | 40.0% | |
| AAAATCATGCCTTGAGCATC+GGG | - | tig0022515:30226-30245 | Msa1401400:intron | 40.0% | |
| AATTGGGGTTTCCATTCCTA+AGG | + | tig0022515:30370-30389 | None:intergenic | 40.0% | |
| GCATCTTGGAATCAGAATTG+GGG | + | tig0022515:30385-30404 | None:intergenic | 40.0% | |
| GAGCATCTTGGAATCAGAAT+TGG | + | tig0022515:30387-30406 | None:intergenic | 40.0% | |
| TGATTCCAAGATGCTCAGAA+AGG | - | tig0022515:30391-30410 | Msa1401400:CDS | 40.0% | |
| GTCGCATTCAAACATCTGTA+AGG | - | tig0022515:30555-30574 | Msa1401400:intron | 40.0% | |
| GATAGTACTTGCACAGTCAT+CGG | + | tig0022515:30725-30744 | None:intergenic | 40.0% | |
| ! | GCAAGTACTATCGTGTTTTG+AGG | - | tig0022515:30733-30752 | Msa1401400:intron | 40.0% |
| AGCTAATTACCATGAGGGTA+TGG | + | tig0022515:30782-30801 | None:intergenic | 40.0% | |
| !! | AAACTTCAATGGTGCTGCAA+AGG | - | tig0022515:30886-30905 | Msa1401400:CDS | 40.0% |
| ! | CACGAGGACAAACTTTAAGA+AGG | + | tig0022515:31070-31089 | None:intergenic | 40.0% |
| CACATGTGTTGTGCTCTAAT+TGG | - | tig0022515:31119-31138 | Msa1401400:intron | 40.0% | |
| ACTCCCATTTCAAAGAGATC+TGG | + | tig0022515:31160-31179 | None:intergenic | 40.0% | |
| TTCGTTTCAACTTCCAACTG+CGG | - | tig0022515:31414-31433 | Msa1401400:intron | 40.0% | |
| ATACAAAGGCTGAGGATAGA+TGG | + | tig0022515:31496-31515 | None:intergenic | 40.0% | |
| AGGGTTGACATGAAGCAAAA+AGG | + | tig0022515:31579-31598 | None:intergenic | 40.0% | |
| ! | TTTTGCTTCATGTCAACCCT+TGG | - | tig0022515:31579-31598 | Msa1401400:CDS | 40.0% |
| CATGTCAACCCTTGGTTAAT+TGG | - | tig0022515:31587-31606 | Msa1401400:CDS | 40.0% | |
| TATATCGACACAAGGTTCTC+AGG | + | tig0022515:31896-31915 | None:intergenic | 40.0% | |
| GTTGACCTTGTGATAACTCT+TGG | - | tig0022515:32141-32160 | Msa1401400:intron | 40.0% | |
| GTTAGTTACTTGTGGTGAAC+TGG | + | tig0022515:32293-32312 | None:intergenic | 40.0% | |
| CTTATCCAAACCACTGTTGA+AGG | - | tig0022515:32332-32351 | Msa1401400:intron | 40.0% | |
| TGTAACCTTCAACAGTGGTT+TGG | + | tig0022515:32340-32359 | None:intergenic | 40.0% | |
| GATTCGGACTTCCTTTAACA+TGG | + | tig0022515:32471-32490 | None:intergenic | 40.0% | |
| CATCATTTACTTAAGTGCCC+AGG | + | tig0022515:32570-32589 | None:intergenic | 40.0% | |
| GGACATTTGATATGAGATGG+AGG | - | tig0022515:32654-32673 | Msa1401400:intron | 40.0% | |
| TTATGATGATTGCTGGACGA+AGG | - | tig0022515:32718-32737 | Msa1401400:intron | 40.0% | |
| ATAGATGCTGTCTGCACATT+TGG | + | tig0022515:32897-32916 | None:intergenic | 40.0% | |
| CAGACAGCATCTATGTTCAA+AGG | - | tig0022515:32903-32922 | Msa1401400:intron | 40.0% | |
| AAAGAAAAGGGGACAATAGG+AGG | + | tig0022515:32936-32955 | None:intergenic | 40.0% | |
| CCTAAAGAAAAGGGGACAAT+AGG | + | tig0022515:32939-32958 | None:intergenic | 40.0% | |
| ! | CCTATTGTCCCCTTTTCTTT+AGG | - | tig0022515:32936-32955 | Msa1401400:CDS | 40.0% |
| CAAGAGACCCTAAAGAAAAG+GGG | + | tig0022515:32947-32966 | None:intergenic | 40.0% | |
| CCAAGAGACCCTAAAGAAAA+GGG | + | tig0022515:32948-32967 | None:intergenic | 40.0% | |
| TCCAAGAGACCCTAAAGAAA+AGG | + | tig0022515:32949-32968 | None:intergenic | 40.0% | |
| CGAAGTTGAAGGATACAGAA+AGG | + | tig0022515:32981-33000 | None:intergenic | 40.0% | |
| CAAAGAATATGCAGTACTGC+CGG | + | tig0022515:33338-33357 | None:intergenic | 40.0% | |
| !! | TTCAAGAAAGTACCTGAGGA+TGG | + | tig0022515:33381-33400 | None:intergenic | 40.0% |
| CATGTGAACAGCAAAACAAC+GGG | + | tig0022515:33540-33559 | None:intergenic | 40.0% | |
| AGGTATCATCCAGTAACACA+AGG | + | tig0022515:33585-33604 | None:intergenic | 40.0% | |
| ! | AGGAGGATGTTGATAGAACA+TGG | + | tig0022515:33717-33736 | None:intergenic | 40.0% |
| !!! | TTTGAAGACGGGGTTTTAGA+TGG | + | tig0022515:33745-33764 | None:intergenic | 40.0% |
| GCCTAAAAGATAGGGAATGT+GGG | + | tig0022515:33804-33823 | None:intergenic | 40.0% | |
| ACATGCTCTGGTAATATCAG+TGG | + | tig0022515:33826-33845 | None:intergenic | 40.0% | |
| TACCAGAGCATGTGACTTTA+CGG | - | tig0022515:33833-33852 | Msa1401400:intron | 40.0% | |
| TTCTTGCACAGCATTCATGA+GGG | - | tig0022515:34003-34022 | Msa1401400:intron | 40.0% | |
| TGTGAAGATATACGAAACGG+GGG | - | tig0022515:34141-34160 | Msa1401400:five_prime_UTR | 40.0% | |
| CCAATTCTTTCTGTGTGGGA+GGG | + | tig0022515:28334-28353 | None:intergenic | 45.0% | |
| ACCAATTCTTTCTGTGTGGG+AGG | + | tig0022515:28335-28354 | None:intergenic | 45.0% | |
| GAGAGGAGAGAATAGGGAAT+AGG | + | tig0022515:28395-28414 | None:intergenic | 45.0% | |
| GGAAGAAGAGAGGAGAGAAT+AGG | + | tig0022515:28402-28421 | None:intergenic | 45.0% | |
| TCCTCTCTTCTTCCATTCCA+TGG | - | tig0022515:28408-28427 | Msa1401400:three_prime_UTR | 45.0% | |
| TCACAAGCTCAATTCTCCCA+CGG | - | tig0022515:28438-28457 | Msa1401400:three_prime_UTR | 45.0% | |
| ! | GTATGATCACTCTGATGGTG+CGG | - | tig0022515:28873-28892 | Msa1401400:intron | 45.0% |
| GGACCTTTGACTATGCTCTA+AGG | - | tig0022515:28901-28920 | Msa1401400:intron | 45.0% | |
| !! | TGACTATGCTCTAAGGTCTC+AGG | - | tig0022515:28908-28927 | Msa1401400:intron | 45.0% |
| CCACGGAAATTGGCACTAAA+AGG | + | tig0022515:28941-28960 | None:intergenic | 45.0% | |
| ! | CCTTTTAGTGCCAATTTCCG+TGG | - | tig0022515:28938-28957 | Msa1401400:intron | 45.0% |
| ! | ATGGACTATCCCACGGAAAT+TGG | + | tig0022515:28951-28970 | None:intergenic | 45.0% |
| CAAGTGTTCTGTGGGAAGAA+TGG | - | tig0022515:29076-29095 | Msa1401400:intron | 45.0% | |
| CGAATTTCCCTGTTCCATGA+AGG | + | tig0022515:29254-29273 | None:intergenic | 45.0% | |
| TAAGATGGTCATCAGAACCC+TGG | + | tig0022515:29366-29385 | None:intergenic | 45.0% | |
| TTTCCTAAGGGTCTTTGCGA+CGG | + | tig0022515:29532-29551 | None:intergenic | 45.0% | |
| ACCCTTAGGAAAGTTGCTGA+AGG | - | tig0022515:29540-29559 | Msa1401400:intron | 45.0% | |
| ! | AATATGAGTTGGAGCGGACA+CGG | - | tig0022515:29604-29623 | Msa1401400:CDS | 45.0% |
| TTTGTTCCCATGACGTCCTT+AGG | - | tig0022515:30351-30370 | Msa1401400:intron | 45.0% | |
| TCCATTCCTAAGGACGTCAT+GGG | + | tig0022515:30360-30379 | None:intergenic | 45.0% | |
| TTCCATTCCTAAGGACGTCA+TGG | + | tig0022515:30361-30380 | None:intergenic | 45.0% | |
| CCTGCCTCAGTAAATAAGTC+AGG | + | tig0022515:30858-30877 | None:intergenic | 45.0% | |
| CCTGACTTATTTACTGAGGC+AGG | - | tig0022515:30855-30874 | Msa1401400:CDS | 45.0% | |
| AGAAGGGACATGCTTGCTTA+TGG | + | tig0022515:31053-31072 | None:intergenic | 45.0% | |
| ! | TCAATATGAGCACCGTCTGT+GGG | + | tig0022515:31187-31206 | None:intergenic | 45.0% |
| ATGAAACAATCTGCCGCAGT+TGG | + | tig0022515:31430-31449 | None:intergenic | 45.0% | |
| TTGGAAGGATACAAAGGCTG+AGG | + | tig0022515:31504-31523 | None:intergenic | 45.0% | |
| GACCTTGTGATAACTCTTGG+AGG | - | tig0022515:32144-32163 | Msa1401400:intron | 45.0% | |
| CTCCTCCAAGAGTTATCACA+AGG | + | tig0022515:32149-32168 | None:intergenic | 45.0% | |
| GTGATAACTCTTGGAGGAGA+TGG | - | tig0022515:32150-32169 | Msa1401400:intron | 45.0% | |
| !!! | CCCTTTTCTTTAGGGTCTCT+TGG | - | tig0022515:32945-32964 | Msa1401400:CDS | 45.0% |
| CGGCAGTACTGCATATTCTT+TGG | - | tig0022515:33336-33355 | Msa1401400:intron | 45.0% | |
| ACTGCATATTCTTTGGCAGC+TGG | - | tig0022515:33343-33362 | Msa1401400:intron | 45.0% | |
| !! | GCTCTTCAAGAAAGTACCTG+AGG | + | tig0022515:33385-33404 | None:intergenic | 45.0% |
| AACCTGCAGATTTGAAGACG+GGG | + | tig0022515:33755-33774 | None:intergenic | 45.0% | |
| GAACCTGCAGATTTGAAGAC+GGG | + | tig0022515:33756-33775 | None:intergenic | 45.0% | |
| GGAACCTGCAGATTTGAAGA+CGG | + | tig0022515:33757-33776 | None:intergenic | 45.0% | |
| GTCTTCAAATCTGCAGGTTC+CGG | - | tig0022515:33756-33775 | Msa1401400:intron | 45.0% | |
| TCTTCAAATCTGCAGGTTCC+GGG | - | tig0022515:33757-33776 | Msa1401400:intron | 45.0% | |
| GATAGGGAATGTGGGCAAAT+TGG | + | tig0022515:33796-33815 | None:intergenic | 45.0% | |
| ! | GCCCACATTCCCTATCTTTT+AGG | - | tig0022515:33800-33819 | Msa1401400:intron | 45.0% |
| GGCCTAAAAGATAGGGAATG+TGG | + | tig0022515:33805-33824 | None:intergenic | 45.0% | |
| ACCAGAGCATGTGACTTTAC+GGG | - | tig0022515:33834-33853 | Msa1401400:intron | 45.0% | |
| GCAGATCCTCTGCTATTGAA+TGG | + | tig0022515:33868-33887 | None:intergenic | 45.0% | |
| TCAATAGCAGAGGATCTGCA+TGG | - | tig0022515:33869-33888 | Msa1401400:intron | 45.0% | |
| CAATAGCAGAGGATCTGCAT+GGG | - | tig0022515:33870-33889 | Msa1401400:intron | 45.0% | |
| ! | CGTCATTTGATGGCAAAGAC+AGG | - | tig0022515:33893-33912 | Msa1401400:intron | 45.0% |
| !! | AGATGCATTGGTTTGCAGCA+TGG | - | tig0022515:33933-33952 | Msa1401400:intron | 45.0% |
| CTTCTTGCACAGCATTCATG+AGG | - | tig0022515:34002-34021 | Msa1401400:intron | 45.0% | |
| GCATTCATGAGGGTCTTCAT+TGG | - | tig0022515:34013-34032 | Msa1401400:intron | 45.0% | |
| AGCGAGATTGTCATGCTTCA+CGG | + | tig0022515:34071-34090 | None:intergenic | 45.0% | |
| ATTCTTTCTGTGTGGGAGGG+AGG | + | tig0022515:28331-28350 | None:intergenic | 50.0% | |
| CCCTCCCACACAGAAAGAAT+TGG | - | tig0022515:28331-28350 | Msa1401400:three_prime_UTR | 50.0% | |
| GCCATGGAATGGAAGAAGAG+AGG | + | tig0022515:28412-28431 | None:intergenic | 50.0% | |
| GGAGAATTGAGCTTGTGAGG+AGG | + | tig0022515:28436-28455 | None:intergenic | 50.0% | |
| GTGGGAGAATTGAGCTTGTG+AGG | + | tig0022515:28439-28458 | None:intergenic | 50.0% | |
| !! | GGGATTGGTCCTGGATTAGT+CGG | - | tig0022515:29009-29028 | Msa1401400:intron | 50.0% |
| AAATTCGAGTGTGACGTCGC+AGG | - | tig0022515:29267-29286 | Msa1401400:CDS | 50.0% | |
| TGGTCATCAGAACCCTGGAT+TGG | + | tig0022515:29361-29380 | None:intergenic | 50.0% | |
| TCTTTGCGACGGCTAGAAGA+AGG | + | tig0022515:29521-29540 | None:intergenic | 50.0% | |
| AAAAGCTGCTGCTCAAGCTG+AGG | - | tig0022515:29563-29582 | Msa1401400:intron | 50.0% | |
| TCCCATGACGTCCTTAGGAA+TGG | - | tig0022515:30356-30375 | Msa1401400:intron | 50.0% | |
| GTTGCAGCAGGATTCCCTAT+TGG | - | tig0022515:30464-30483 | Msa1401400:intron | 50.0% | |
| ! | AATATGAGCACCGTCTGTGG+GGG | + | tig0022515:31185-31204 | None:intergenic | 50.0% |
| ! | CAATATGAGCACCGTCTGTG+GGG | + | tig0022515:31186-31205 | None:intergenic | 50.0% |
| ! | GTCAATATGAGCACCGTCTG+TGG | + | tig0022515:31188-31207 | None:intergenic | 50.0% |
| ATATGTGGAACCACGTGTCC+AGG | - | tig0022515:31663-31682 | Msa1401400:CDS | 50.0% | |
| CACAAGGTTCTCAGGTGCAA+TGG | + | tig0022515:31888-31907 | None:intergenic | 50.0% | |
| AGGAGATGGCACTGTCCTAT+GGG | - | tig0022515:32164-32183 | Msa1401400:CDS | 50.0% | |
| GAAGGTTGAGCTACCATCTC+TGG | - | tig0022515:32736-32755 | Msa1401400:intron | 50.0% | |
| TCCTTTGTCACACGTGTGCA+AGG | - | tig0022515:33286-33305 | Msa1401400:intron | 50.0% | |
| CCTTTGTCACACGTGTGCAA+GGG | - | tig0022515:33287-33306 | Msa1401400:intron | 50.0% | |
| CTTTGTCACACGTGTGCAAG+GGG | - | tig0022515:33288-33307 | Msa1401400:intron | 50.0% | |
| GCATATTCTTTGGCAGCTGG+AGG | - | tig0022515:33346-33365 | Msa1401400:intron | 50.0% | |
| TTTGGCAGCTGGAGGATCAA+TGG | - | tig0022515:33354-33373 | Msa1401400:intron | 50.0% | |
| AGGATCAATGGTCCATCCTC+AGG | - | tig0022515:33366-33385 | Msa1401400:intron | 50.0% | |
| !!! | GGTTTTAGATGGAGGACAGG+AGG | + | tig0022515:33734-33753 | None:intergenic | 50.0% |
| !!! | GAAGACGGGGTTTTAGATGG+AGG | + | tig0022515:33742-33761 | None:intergenic | 50.0% |
| AACCCCGTCTTCAAATCTGC+AGG | - | tig0022515:33750-33769 | Msa1401400:intron | 50.0% | |
| ACCCGTAAAGTCACATGCTC+TGG | + | tig0022515:33838-33857 | None:intergenic | 50.0% | |
| TCTGCATGGGCGTCATTTGA+TGG | - | tig0022515:33883-33902 | Msa1401400:intron | 50.0% | |
| GACAGGAAACAGTTAGCACC+AGG | - | tig0022515:33910-33929 | Msa1401400:intron | 50.0% | |
| GTTAGCACCAGGAGATGCAT+TGG | - | tig0022515:33921-33940 | Msa1401400:intron | 50.0% | |
| CTGCAAACCAATGCATCTCC+TGG | + | tig0022515:33931-33950 | None:intergenic | 50.0% | |
| GAATCTCCATGACAAGCCGT+AGG | + | tig0022515:33973-33992 | None:intergenic | 50.0% | |
| CGAGATTGTCATGCTTCACG+GGG | + | tig0022515:34069-34088 | None:intergenic | 50.0% | |
| GCGAGATTGTCATGCTTCAC+GGG | + | tig0022515:34070-34089 | None:intergenic | 50.0% | |
| !! | TGTGAGGAGGTGCCATGGAA+TGG | + | tig0022515:28423-28442 | None:intergenic | 55.0% |
| ! | TCACTCTGATGGTGCGGACT+TGG | - | tig0022515:28879-28898 | Msa1401400:intron | 55.0% |
| ! | CACTCTGATGGTGCGGACTT+GGG | - | tig0022515:28880-28899 | Msa1401400:intron | 55.0% |
| TTGGGTTCCCCGCTAGTAGA+CGG | - | tig0022515:28985-29004 | Msa1401400:intron | 55.0% | |
| AATCCCACCGTCTACTAGCG+GGG | + | tig0022515:28995-29014 | None:intergenic | 55.0% | |
| CAATCCCACCGTCTACTAGC+GGG | + | tig0022515:28996-29015 | None:intergenic | 55.0% | |
| CCAATCCCACCGTCTACTAG+CGG | + | tig0022515:28997-29016 | None:intergenic | 55.0% | |
| !! | GTCCTGGATTAGTCGGTCGT+CGG | - | tig0022515:29016-29035 | Msa1401400:intron | 55.0% |
| TAGCCGTCGCAAAGACCCTT+AGG | - | tig0022515:29526-29545 | Msa1401400:intron | 55.0% | |
| CAAGATCAGCCCGATGCTCA+AGG | + | tig0022515:30238-30257 | None:intergenic | 55.0% | |
| CTTACTACTGCGCTCTGCTG+TGG | + | tig0022515:30968-30987 | None:intergenic | 55.0% | |
| AGCAGAGCGCAGTAGTAAGC+AGG | - | tig0022515:30969-30988 | Msa1401400:intron | 55.0% | |
| AGAAGATCGACCTGGACACG+TGG | + | tig0022515:31676-31695 | None:intergenic | 55.0% | |
| ACGTGTCCAGGTCGATCTTC+TGG | - | tig0022515:31675-31694 | Msa1401400:intron | 55.0% | |
| TGTCCAGGTCGATCTTCTGG+AGG | - | tig0022515:31678-31697 | Msa1401400:intron | 55.0% | |
| ACTCCTCCAGAAGATCGACC+TGG | + | tig0022515:31684-31703 | None:intergenic | 55.0% | |
| GAGGAGATGGCACTGTCCTA+TGG | - | tig0022515:32163-32182 | Msa1401400:CDS | 55.0% | |
| ! | AAGGGGACAATAGGAGGCAC+TGG | + | tig0022515:32930-32949 | None:intergenic | 55.0% |
| CCCTTGCACACGTGTGACAA+AGG | + | tig0022515:33290-33309 | None:intergenic | 55.0% | |
| !!! | CGGGGTTTTAGATGGAGGAC+AGG | + | tig0022515:33737-33756 | None:intergenic | 55.0% |
| CCATGACAAGCCGTAGGAAC+AGG | + | tig0022515:33967-33986 | None:intergenic | 55.0% | |
| CCTGTTCCTACGGCTTGTCA+TGG | - | tig0022515:33964-33983 | Msa1401400:intron | 55.0% | |
| !! | GAGCTTGTGAGGAGGTGCCA+TGG | + | tig0022515:28428-28447 | None:intergenic | 60.0% |
| GTTCCCCGCTAGTAGACGGT+GGG | - | tig0022515:28989-29008 | Msa1401400:intron | 60.0% | |
| CCGCTAGTAGACGGTGGGAT+TGG | - | tig0022515:28994-29013 | Msa1401400:intron | 60.0% | |
| !! | GTAGACGGTGGGATTGGTCC+TGG | - | tig0022515:29000-29019 | Msa1401400:intron | 60.0% |
| GTCCGACGACCGACTAATCC+AGG | + | tig0022515:29021-29040 | None:intergenic | 60.0% | |
| !! | GGATTAGTCGGTCGTCGGAC+TGG | - | tig0022515:29021-29040 | Msa1401400:intron | 60.0% |
| GTGACGTCGCAGGCTGAGAA+TGG | - | tig0022515:29277-29296 | Msa1401400:CDS | 60.0% | |
| CTCAAGCTGAGGCTGCCGAA+TGG | - | tig0022515:29574-29593 | Msa1401400:intron | 60.0% | |
| ATGGGAGTCACCCCCACAGA+CGG | - | tig0022515:31172-31191 | Msa1401400:intron | 60.0% | |
| GTCACACGTGTGCAAGGGGA+TGG | - | tig0022515:33292-33311 | Msa1401400:intron | 60.0% | |
| ! | TGGTTTGCAGCATGGCACCC+TGG | - | tig0022515:33941-33960 | Msa1401400:intron | 60.0% |
| CAAGCCGTAGGAACAGGCCA+GGG | + | tig0022515:33961-33980 | None:intergenic | 60.0% | |
| ACAAGCCGTAGGAACAGGCC+AGG | + | tig0022515:33962-33981 | None:intergenic | 60.0% | |
| GGTTCCCCGCTAGTAGACGG+TGG | - | tig0022515:28988-29007 | Msa1401400:intron | 65.0% | |
| GGCACCCTGGCCTGTTCCTA+CGG | - | tig0022515:33954-33973 | Msa1401400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022515 | gene | 28228 | 34337 | 28228 | ID=Msa1401400;Name=Msa1401400 |
| tig0022515 | mRNA | 28228 | 34337 | 28228 | ID=Msa1401400-mRNA-1;Parent=Msa1401400;Name=Msa1401400-mRNA-1;_AED=0.12;_eAED=0.12;_QI=199|1|1|1|1|1|11|257|523 |
| tig0022515 | exon | 28228 | 28793 | 28228 | ID=Msa1401400-mRNA-1:exon:18347;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 29178 | 29485 | 29178 | ID=Msa1401400-mRNA-1:exon:18346;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 29581 | 29659 | 29581 | ID=Msa1401400-mRNA-1:exon:18345;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 30380 | 30453 | 30380 | ID=Msa1401400-mRNA-1:exon:18344;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 30826 | 30932 | 30826 | ID=Msa1401400-mRNA-1:exon:18343;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 31310 | 31404 | 31310 | ID=Msa1401400-mRNA-1:exon:18342;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 31575 | 31688 | 31575 | ID=Msa1401400-mRNA-1:exon:18341;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 32153 | 32340 | 32153 | ID=Msa1401400-mRNA-1:exon:18340;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 32917 | 33036 | 32917 | ID=Msa1401400-mRNA-1:exon:18339;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 33156 | 33300 | 33156 | ID=Msa1401400-mRNA-1:exon:18338;Parent=Msa1401400-mRNA-1 |
| tig0022515 | exon | 34106 | 34337 | 34106 | ID=Msa1401400-mRNA-1:exon:18337;Parent=Msa1401400-mRNA-1 |
| tig0022515 | five_prime_UTR | 34139 | 34337 | 34139 | ID=Msa1401400-mRNA-1:five_prime_utr;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 34106 | 34138 | 34106 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 33156 | 33300 | 33156 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 32917 | 33036 | 32917 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 32153 | 32340 | 32153 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 31575 | 31688 | 31575 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 31310 | 31404 | 31310 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 30826 | 30932 | 30826 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 30380 | 30453 | 30380 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 29581 | 29659 | 29581 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 29178 | 29485 | 29178 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | CDS | 28485 | 28793 | 28485 | ID=Msa1401400-mRNA-1:cds;Parent=Msa1401400-mRNA-1 |
| tig0022515 | three_prime_UTR | 28228 | 28484 | 28228 | ID=Msa1401400-mRNA-1:three_prime_utr;Parent=Msa1401400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
